AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0533390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533390 MtrunA17_Chr4g0006981 95.960 297 12 0 1 297 17 313 0.0 590
Msa0533390 MtrunA17_Chr4g0047431 47.368 114 53 2 183 296 147 253 1.93e-25 105
Msa0533390 MtrunA17_Chr4g0047431 36.364 165 86 7 133 291 334 485 4.42e-22 95.9
Msa0533390 MtrunA17_Chr4g0047431 40.385 104 59 1 188 291 277 377 3.93e-19 87.4
Msa0533390 MtrunA17_Chr2g0332591 37.500 96 57 1 196 291 55 147 2.10e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533390 AT2G38270.1 66.058 274 85 3 24 295 25 292 5.57e-131 374
Msa0533390 AT3G54900.1 46.552 116 55 2 180 291 51 163 3.05e-28 107
Msa0533390 AT4G04950.1 41.935 124 56 2 173 296 143 250 2.24e-22 97.1
Msa0533390 AT4G04950.1 31.677 161 98 3 133 291 332 482 2.80e-20 90.9
Msa0533390 AT4G04950.1 40.000 100 57 1 192 291 279 375 1.40e-16 80.1
Msa0533390 AT3G15660.2 39.423 104 60 1 193 296 62 162 1.91e-20 86.7
Msa0533390 AT3G15660.1 39.423 104 60 1 193 296 62 162 1.91e-20 86.7

Find 111 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAAGGGTAGGGGTATTT+TGG 0.140233 4_1:+8284864 None:intergenic
TGGTAGGGTTTGAGGGAAAT+TGG 0.201721 4_1:+8284806 None:intergenic
GAGCCATGACTGAGGCTTTC+GGG 0.227361 4_1:+8284781 None:intergenic
CGTAGGTTTGTGGAGGAGTT+GGG 0.231517 4_1:+8284830 None:intergenic
CGAAGATCAGCCTTCTTCTT+AGG 0.240169 4_1:+8280965 None:intergenic
TGTTAAAACAAGACATTATT+AGG 0.248227 4_1:+8280444 None:intergenic
CAAGGTAGTTGCATTCATTA+AGG 0.254217 4_1:-8280870 Msa0533390:CDS
TTGGATGAAGATTATAACTA+TGG 0.276665 4_1:-8280758 Msa0533390:CDS
TCTTACCCAAGTGGCGTTTC+CGG 0.280532 4_1:+8280994 None:intergenic
GTAGAATGTGTGGAACATTA+AGG 0.286516 4_1:-8280561 Msa0533390:three_prime_UTR
TTCGGGGATGGTAGGGTTTG+AGG 0.288346 4_1:+8284798 None:intergenic
GCGTTTCCGGATTCATTTCC+AGG 0.302092 4_1:+8281007 None:intergenic
AAAGCTCCGGCACCGATTTC+CGG 0.329481 4_1:+8284579 None:intergenic
CGAGCCATGACTGAGGCTTT+CGG 0.330303 4_1:+8284780 None:intergenic
GGTAGGGTTTGAGGGAAATT+GGG 0.361426 4_1:+8284807 None:intergenic
GCGTAGGTTTGTGGAGGAGT+TGG 0.369921 4_1:+8284829 None:intergenic
AACTGAGAATCTTACCTTAA+CGG 0.380493 4_1:+8284550 None:intergenic
GGAAATTGGGCGTAGGTTTG+TGG 0.385996 4_1:+8284820 None:intergenic
GTAGGTTTGTGGAGGAGTTG+GGG 0.395804 4_1:+8284831 None:intergenic
TTTCTTTCAATGAAAGCTAA+AGG 0.415735 4_1:+8280360 None:intergenic
GAAGAACTTCCGTCGGGTGC+TGG 0.420679 4_1:-8284683 Msa0533390:CDS
TCAGCCTTCTTCTTAGGTTG+TGG 0.421663 4_1:+8280971 None:intergenic
TACGAACAATCCACCACAAT+AGG 0.423150 4_1:+8280259 None:intergenic
CTGAGGCTTTCGGGGATGGT+AGG 0.424682 4_1:+8284790 None:intergenic
AAGGTAGTTGCATTCATTAA+GGG 0.425277 4_1:-8280869 Msa0533390:CDS
AAATCGGTGCCGGAGCTTTG+TGG 0.430690 4_1:-8284575 Msa0533390:CDS
CCATCCAAGACTTCCACGCT+TGG 0.443810 4_1:+8281062 None:intergenic
TGGGTCAAAGATTCTCTGTC+AGG 0.451977 4_1:+8281082 None:intergenic
GGAGCTTTGTGGCTCCGTTA+AGG 0.452752 4_1:-8284564 Msa0533390:intron
CATCCAAGACTTCCACGCTT+GGG 0.462772 4_1:+8281063 None:intergenic
TCTGTTATAGGTTGGGGTAG+TGG 0.466178 4_1:-8281110 Msa0533390:intron
TGACCCAAGCGTGGAAGTCT+TGG 0.466669 4_1:-8281066 Msa0533390:CDS
TGAGGCTTTCGGGGATGGTA+GGG 0.470260 4_1:+8284791 None:intergenic
AGAGGAGTTGTGTAGAAGAA+AGG 0.473284 4_1:+8284915 None:intergenic
TAGAATGTGTGGAACATTAA+GGG 0.473402 4_1:-8280560 Msa0533390:three_prime_UTR
TCGGGGATGGTAGGGTTTGA+GGG 0.479500 4_1:+8284799 None:intergenic
TTACAATATTGTTCCTATTG+TGG 0.483884 4_1:-8280272 Msa0533390:three_prime_UTR
GGTAGTAGGCATTCTTGAAA+AGG 0.484387 4_1:-8280810 Msa0533390:CDS
TTGACCTCCATGTTTGAGAA+AGG 0.485069 4_1:-8280647 Msa0533390:CDS
TGTCTCGGCTCACCGGAAAT+CGG 0.487605 4_1:-8284591 Msa0533390:CDS
AAGATTATAACTATGGATTG+AGG 0.490227 4_1:-8280751 Msa0533390:CDS
GTTCCACCTGGAAATGAATC+CGG 0.492241 4_1:-8281013 Msa0533390:CDS
CACTTCACCTTTCTCAAACA+TGG 0.492756 4_1:+8280640 None:intergenic
GGCTCACCGGAAATCGGTGC+CGG 0.493679 4_1:-8284585 Msa0533390:CDS
GGATTCTCTCAGAGGGTAGT+AGG 0.496454 4_1:-8280824 Msa0533390:CDS
AACGGTGAGCTTCAGTTCAT+CGG 0.500069 4_1:-8284638 Msa0533390:CDS
CAATATTGTTCCTATTGTGG+TGG 0.504703 4_1:-8280269 Msa0533390:three_prime_UTR
TTCAATGAAAGCTAAAGGAC+AGG 0.506475 4_1:+8280365 None:intergenic
AGATTATAACTATGGATTGA+GGG 0.506926 4_1:-8280750 Msa0533390:CDS
CTGCTACTGTCTCGGCTCAC+CGG 0.511437 4_1:-8284598 Msa0533390:CDS
TTGAATGGTGAACTTGTTGG+TGG 0.513486 4_1:-8280680 Msa0533390:CDS
TTATGAGAGTGTAAATGTAT+TGG 0.517307 4_1:-8280777 Msa0533390:CDS
CTCAACTGACCATTCATCAA+TGG 0.519014 4_1:-8284951 Msa0533390:exon
TGGGGTGGAAATTGAATGAA+AGG 0.522766 4_1:+8284849 None:intergenic
ATGAATCCGGAAACGCCACT+TGG 0.525120 4_1:-8281000 Msa0533390:CDS
ATGACTGAGGCTTTCGGGGA+TGG 0.525196 4_1:+8284786 None:intergenic
TAATATTGCTGCTACTGTCT+CGG 0.530231 4_1:-8284606 Msa0533390:CDS
GTTCCACACATTCTACTCCT+AGG 0.530393 4_1:+8280568 None:intergenic
AAATCTCGCCGATACGTCAC+CGG 0.541828 4_1:-8284741 Msa0533390:CDS
TCAGTCATGGCTCGTCGCCA+TGG 0.543419 4_1:-8284771 Msa0533390:CDS
TGAAGAGCTTGTCGACAAGT+TGG 0.546033 4_1:-8280903 Msa0533390:CDS
GGTGAACCTGCTAGGAGCCT+AGG 0.550934 4_1:-8280585 Msa0533390:three_prime_UTR
GGAAATTGAATGAAAGGGTA+GGG 0.551379 4_1:+8284855 None:intergenic
ACCCGACGGAAGTTCTTCTC+CGG 0.557545 4_1:+8284688 None:intergenic
CATTAAGGGAAGAGAAATGC+AGG 0.558299 4_1:-8280546 Msa0533390:three_prime_UTR
TTAACGGAGCCACAAAGCTC+CGG 0.559023 4_1:+8284566 None:intergenic
CACAGTCACCGGTGACGTAT+CGG 0.561109 4_1:+8284733 None:intergenic
CTCTGAGAGAATCCGCATAA+CGG 0.561874 4_1:+8280833 None:intergenic
GTTAGTTGCACGTGACGACC+AGG 0.564065 4_1:+8280935 None:intergenic
TGATGTTAGCCATTGATGAA+TGG 0.566582 4_1:+8284942 None:intergenic
AAGGGAAATGATGATAAGAG+AGG 0.567484 4_1:+8284897 None:intergenic
AAGAATACATAAAGATCAGT+GGG 0.568467 4_1:-8281039 Msa0533390:CDS
GTTTGAGGGAAATTGGGCGT+AGG 0.569238 4_1:+8284813 None:intergenic
TTTGAGAAAGGTGAAGTGGC+TGG 0.570458 4_1:-8280635 Msa0533390:CDS
ATTGTGCCGGTGAACCTGCT+AGG 0.573342 4_1:-8280593 Msa0533390:three_prime_UTR
GTCACCGGTGACTGTGTCGC+CGG 0.576738 4_1:-8284726 Msa0533390:CDS
AAGACCACAACCTAAGAAGA+AGG 0.576809 4_1:-8280975 Msa0533390:CDS
CAAGTTGGTAAAAGAGAACA+AGG 0.578440 4_1:-8280888 Msa0533390:CDS
ACCGGAGAAGAACTTCCGTC+GGG 0.581537 4_1:-8284689 Msa0533390:CDS
CCAAGCGTGGAAGTCTTGGA+TGG 0.586323 4_1:-8281062 Msa0533390:CDS
TCTACTCCTAGGCTCCTAGC+AGG 0.588296 4_1:+8280579 None:intergenic
TGGAAATTGAATGAAAGGGT+AGG 0.592963 4_1:+8284854 None:intergenic
GAAGAATACATAAAGATCAG+TGG 0.595358 4_1:-8281040 Msa0533390:CDS
GGTTTGTGGAGGAGTTGGGG+TGG 0.598414 4_1:+8284834 None:intergenic
TCTAGAAGTGCTCCGTTATG+CGG 0.598952 4_1:-8280845 Msa0533390:CDS
ATCAGTGGGAAAGTTCCACC+TGG 0.600855 4_1:-8281025 Msa0533390:CDS
CGTTATGCGGATTCTCTCAG+AGG 0.601405 4_1:-8280832 Msa0533390:CDS
AATTGGGCGTAGGTTTGTGG+AGG 0.611873 4_1:+8284823 None:intergenic
TGAATCCGGAAACGCCACTT+GGG 0.613599 4_1:-8280999 Msa0533390:CDS
GTAGGCATTCTTGAAAAGGA+AGG 0.616996 4_1:-8280806 Msa0533390:CDS
TTGTCGACAAGCTCTTCAAG+AGG 0.621202 4_1:+8280908 None:intergenic
TACGCGGTTTATGATAAGAA+CGG 0.622445 4_1:-8284656 Msa0533390:CDS
CACCGGAGAAGAACTTCCGT+CGG 0.625091 4_1:-8284690 Msa0533390:CDS
CCGGAAAACGATGAAATCAC+CGG 0.625545 4_1:-8284707 Msa0533390:CDS
ATCCCCGAAAGCCTCAGTCA+TGG 0.626823 4_1:-8284784 Msa0533390:CDS
TAGGCTCCTAGCAGGTTCAC+CGG 0.627651 4_1:+8280587 None:intergenic
GAAATTGAATGAAAGGGTAG+GGG 0.632064 4_1:+8284856 None:intergenic
AGCCATGACTGAGGCTTTCG+GGG 0.634989 4_1:+8284782 None:intergenic
GAGAATCTTTGACCCAAGCG+TGG 0.636080 4_1:-8281075 Msa0533390:CDS
GTCGGGTGCTGGAGTTTACG+CGG 0.642001 4_1:-8284672 Msa0533390:CDS
GGGGTGGAAATTGAATGAAA+GGG 0.644100 4_1:+8284850 None:intergenic
GCTGATCTTCGATTAACACC+TGG 0.649446 4_1:-8280953 Msa0533390:CDS
ATGGCGACGAGCCATGACTG+AGG 0.652471 4_1:+8284773 None:intergenic
TGTCGACAAGCTCTTCAAGA+GGG 0.653430 4_1:+8280909 None:intergenic
GAGCCTAGGAGTAGAATGTG+TGG 0.655640 4_1:-8280571 Msa0533390:three_prime_UTR
AGGTTGTGGTCTTACCCAAG+TGG 0.659960 4_1:+8280985 None:intergenic
CATGTTTGAGAAAGGTGAAG+TGG 0.660920 4_1:-8280639 Msa0533390:CDS
GTTATGCGGATTCTCTCAGA+GGG 0.661112 4_1:-8280831 Msa0533390:CDS
TTTCCGGATTCATTTCCAGG+TGG 0.667945 4_1:+8281010 None:intergenic
GCGTAAACTCCAGCACCCGA+CGG 0.684687 4_1:+8284674 None:intergenic
TTCACCTTTCTCAAACATGG+AGG 0.696862 4_1:+8280643 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACACTTTATTTAATAAATTT+AGG - chr4_1:8282610-8282629 Msa0533390:intron 10.0%
!!! ACACTTTATTTAATAAATTT+AGG - chr4_1:8282610-8282629 Msa0533390:intron 10.0%
!!! ATTCTTTTAAATTAAATTCA+AGG - chr4_1:8284698-8284717 Msa0533390:CDS 10.0%
!!! TTCTTTTAAATTAAATTCAA+GGG - chr4_1:8284699-8284718 Msa0533390:CDS 10.0%
!!! CATATTTAATAGTTTTGAAT+TGG - chr4_1:8280960-8280979 Msa0533390:CDS 15.0%
!!! TCATTTTCTCAAATTATAAT+CGG + chr4_1:8281483-8281502 None:intergenic 15.0%
!! TCTTCTTATTATAAGAAAAT+GGG - chr4_1:8281946-8281965 Msa0533390:intron 15.0%
!!! TATTCCTGTTTTTTTTTTTT+TGG + chr4_1:8282295-8282314 None:intergenic 15.0%
!!! AACACAGTATTTTTTATATA+AGG - chr4_1:8284882-8284901 Msa0533390:CDS 15.0%
!!! TAATTGTTTAGAACAATTTG+TGG - chr4_1:8280755-8280774 Msa0533390:CDS 20.0%
!! TATAATCACATTCTTAATTC+CGG - chr4_1:8281135-8281154 Msa0533390:intron 20.0%
!! TCTGCTTATTATAAGAAAAT+GGG - chr4_1:8281623-8281642 Msa0533390:intron 20.0%
!!! AAGTTCATTTTCTATGATAA+AGG - chr4_1:8281655-8281674 Msa0533390:intron 20.0%
!!! TTCTTTTATAGTATTCTTGT+TGG - chr4_1:8281833-8281852 Msa0533390:intron 20.0%
!!! CATTTTCTTATAATAAGAAG+AGG + chr4_1:8281947-8281966 None:intergenic 20.0%
!! CTCTTCTTATTATAAGAAAA+TGG - chr4_1:8281945-8281964 Msa0533390:intron 20.0%
!! TTATAGTATTTCATATCGAA+AGG - chr4_1:8282134-8282153 Msa0533390:intron 20.0%
!!! TCTTAAAAGTTATTTCAAAC+AGG - chr4_1:8282255-8282274 Msa0533390:intron 20.0%
!!! TGTTTTTTTTTTTTTGGTAG+TGG + chr4_1:8282289-8282308 None:intergenic 20.0%
!! ACTACCAAAAAAAAAAAAAC+AGG - chr4_1:8282288-8282307 Msa0533390:intron 20.0%
!! ATGTTTGTTTGTTTAGAAAT+AGG - chr4_1:8282372-8282391 Msa0533390:intron 20.0%
!! TGTTTGTTTGTTTAGAAATA+GGG - chr4_1:8282373-8282392 Msa0533390:intron 20.0%
!! TTTATGATATAACATTGGAT+AGG - chr4_1:8282677-8282696 Msa0533390:intron 20.0%
!! TTATGATATAACATTGGATA+GGG - chr4_1:8282678-8282697 Msa0533390:intron 20.0%
!!! TGTAACCTCTAAATTTTTTT+GGG - chr4_1:8283679-8283698 Msa0533390:intron 20.0%
!! AAAATCCCAAAAAAATTTAG+AGG + chr4_1:8283687-8283706 None:intergenic 20.0%
!! TGTTAAAACAAGACATTATT+AGG + chr4_1:8284763-8284782 None:intergenic 20.0%
!!! TAGTTTTGAATTGGTGTAAA+CGG - chr4_1:8280969-8280988 Msa0533390:CDS 25.0%
! TAAACGGATATATGTATCAT+GGG - chr4_1:8280985-8281004 Msa0533390:CDS 25.0%
! ATTTCAAAATTCAGGATTCA+AGG + chr4_1:8281022-8281041 None:intergenic 25.0%
! CTAGTTGTATTTCAAAATTC+AGG + chr4_1:8281030-8281049 None:intergenic 25.0%
!!! AATTTTGAAATACAACTAGC+TGG - chr4_1:8281031-8281050 Msa0533390:CDS 25.0%
!! AACTAGCTGGTAAAATTTTA+TGG - chr4_1:8281044-8281063 Msa0533390:CDS 25.0%
!! CTGGTAAAATTTTATGGAAT+AGG - chr4_1:8281050-8281069 Msa0533390:CDS 25.0%
!!! TTGAATTGTTTTGAAGCTTT+GGG - chr4_1:8281308-8281327 Msa0533390:intron 25.0%
! TTCAGTTTAATCATATGTGT+CGG - chr4_1:8281508-8281527 Msa0533390:intron 25.0%
!! CATTTTCTTATAATAAGCAG+AGG + chr4_1:8281624-8281643 None:intergenic 25.0%
! CTCTGCTTATTATAAGAAAA+TGG - chr4_1:8281622-8281641 Msa0533390:intron 25.0%
! AGGCTAAGAAATAGTATTTA+AGG - chr4_1:8281710-8281729 Msa0533390:intron 25.0%
!!! TAAGGTGCATTTTAGTAATA+AGG - chr4_1:8281728-8281747 Msa0533390:intron 25.0%
!!! AAGGTGCATTTTAGTAATAA+GGG - chr4_1:8281729-8281748 Msa0533390:intron 25.0%
! TAATGGAAAGGATACTTATT+AGG - chr4_1:8281804-8281823 Msa0533390:intron 25.0%
!! AAGTTCATTTTCTATGATGA+AGG - chr4_1:8281978-8281997 Msa0533390:intron 25.0%
!!! AGTATTTAAGGTGCTTTTTT+AGG - chr4_1:8282024-8282043 Msa0533390:intron 25.0%
!!! GTATTTAAGGTGCTTTTTTA+GGG - chr4_1:8282025-8282044 Msa0533390:intron 25.0%
!! TCTTTTACTGTTATTCTTGA+TGG - chr4_1:8282218-8282237 Msa0533390:intron 25.0%
! AAAAGACAAATGCCAAATTT+CGG - chr4_1:8282398-8282417 Msa0533390:intron 25.0%
! TATTAGTTAGAACCGAAATT+TGG + chr4_1:8282413-8282432 None:intergenic 25.0%
! AATTTAGGAGACTTTATGAT+TGG - chr4_1:8282625-8282644 Msa0533390:intron 25.0%
! GAGACTTTATGATATAACAT+TGG - chr4_1:8282672-8282691 Msa0533390:intron 25.0%
! TATGATATAACATTGGATAG+GGG - chr4_1:8282679-8282698 Msa0533390:intron 25.0%
! TGTGAAGATTAATCCAAAAT+AGG - chr4_1:8282994-8283013 Msa0533390:intron 25.0%
!!! TAGGCATGAAAGTTTTAATT+TGG - chr4_1:8283126-8283145 Msa0533390:intron 25.0%
!!! TGAAAGTTTTAATTTGGAGA+AGG - chr4_1:8283132-8283151 Msa0533390:intron 25.0%
! TTTCAACACTCTATTTCATT+GGG + chr4_1:8283648-8283667 None:intergenic 25.0%
!!! CTGTAACCTCTAAATTTTTT+TGG - chr4_1:8283678-8283697 Msa0533390:intron 25.0%
! TGCAATATACAAACAGTATT+TGG - chr4_1:8283933-8283952 Msa0533390:intron 25.0%
! ACAATGAAAAATTCATCATC+AGG + chr4_1:8284067-8284086 None:intergenic 25.0%
! ATTGTGAAATCATCTGTTAT+AGG - chr4_1:8284082-8284101 Msa0533390:intron 25.0%
! AAGAATACATAAAGATCAGT+GGG - chr4_1:8284165-8284184 Msa0533390:intron 25.0%
!! TTATGAGAGTGTAAATGTAT+TGG - chr4_1:8284427-8284446 Msa0533390:intron 25.0%
! TTGGATGAAGATTATAACTA+TGG - chr4_1:8284446-8284465 Msa0533390:intron 25.0%
!! AAGATTATAACTATGGATTG+AGG - chr4_1:8284453-8284472 Msa0533390:intron 25.0%
!! AGATTATAACTATGGATTGA+GGG - chr4_1:8284454-8284473 Msa0533390:intron 25.0%
! CAAAAAGTAATTAATTGTGC+CGG - chr4_1:8284598-8284617 Msa0533390:CDS 25.0%
!!! CTACTCGGTAATATTTTTAA+TGG - chr4_1:8284786-8284805 Msa0533390:CDS 25.0%
! TTTCTTTCAATGAAAGCTAA+AGG + chr4_1:8284847-8284866 None:intergenic 25.0%
! TTACAATATTGTTCCTATTG+TGG - chr4_1:8284932-8284951 Msa0533390:CDS 25.0%
!! TATTTTGGGGAGAAAAAGAA+GGG + chr4_1:8280328-8280347 None:intergenic 30.0%
AACTGAGAATCTTACCTTAA+CGG + chr4_1:8280657-8280676 None:intergenic 30.0%
GTAAACGGATATATGTATCA+TGG - chr4_1:8280984-8281003 Msa0533390:CDS 30.0%
AGAGTTACTCAAGTGTAAAT+TGG - chr4_1:8281085-8281104 Msa0533390:CDS 30.0%
AATTTGATCCAATTTCGTTG+TGG - chr4_1:8281182-8281201 Msa0533390:intron 30.0%
ATTTGATCCAATTTCGTTGT+GGG - chr4_1:8281183-8281202 Msa0533390:intron 30.0%
GTAACTAAGTTCGTAGAAAT+GGG + chr4_1:8281251-8281270 None:intergenic 30.0%
AGTAACTAAGTTCGTAGAAA+TGG + chr4_1:8281252-8281271 None:intergenic 30.0%
CAAAGCTTCAAAACAATTCA+AGG + chr4_1:8281309-8281328 None:intergenic 30.0%
!!! CTTGAATTGTTTTGAAGCTT+TGG - chr4_1:8281307-8281326 Msa0533390:intron 30.0%
! TTAGAATAGATGTTGATGGA+AGG - chr4_1:8281410-8281429 Msa0533390:intron 30.0%
TTATAGTATTCTTGTTGGTG+TGG - chr4_1:8281838-8281857 Msa0533390:intron 30.0%
TATAGTATTCTTGTTGGTGT+GGG - chr4_1:8281839-8281858 Msa0533390:intron 30.0%
!! AGGCTAAGAAAGAGTATTTA+AGG - chr4_1:8282012-8282031 Msa0533390:intron 30.0%
TTACCCTTGTAGAGAATTAA+AGG + chr4_1:8282083-8282102 None:intergenic 30.0%
TTAATTCTCTACAAGGGTAA+CGG - chr4_1:8282083-8282102 Msa0533390:intron 30.0%
TAACGGAAAGGATACTTATT+AGG - chr4_1:8282100-8282119 Msa0533390:intron 30.0%
TCATATCGAAAGGAAAGAAT+TGG - chr4_1:8282144-8282163 Msa0533390:intron 30.0%
CAGGAATAGTAATTGAAACA+TGG - chr4_1:8282307-8282326 Msa0533390:intron 30.0%
! TCGGTTCTAACTAATAGATA+CGG - chr4_1:8282417-8282436 Msa0533390:intron 30.0%
TAATAGATACGGTGATAGTT+TGG - chr4_1:8282428-8282447 Msa0533390:intron 30.0%
GGAAATTTAAGAAAGGTCAT+AGG - chr4_1:8282540-8282559 Msa0533390:intron 30.0%
ATGATATAACATTGGATAGG+GGG - chr4_1:8282680-8282699 Msa0533390:intron 30.0%
TAGTTGTAGGTGATAAAAAG+CGG - chr4_1:8282815-8282834 Msa0533390:intron 30.0%
CTCGATTATTCCACTAAAAA+TGG - chr4_1:8282962-8282981 Msa0533390:intron 30.0%
TTTCCAAATAGTTGTGACAT+TGG + chr4_1:8283086-8283105 None:intergenic 30.0%
TCACAACTATTTGGAAAACT+AGG - chr4_1:8283089-8283108 Msa0533390:intron 30.0%
!!! AAGTTTTAATTTGGAGAAGG+TGG - chr4_1:8283135-8283154 Msa0533390:intron 30.0%
ATTCTCAAGAGCAAGTTTAA+AGG - chr4_1:8283187-8283206 Msa0533390:intron 30.0%
!!! TTTTAGCTTTTCTCTTAACC+AGG - chr4_1:8283210-8283229 Msa0533390:intron 30.0%
CTACAACAGAATTGGAAATA+CGG + chr4_1:8283443-8283462 None:intergenic 30.0%
ACTTCTTCAATGCAATAAGT+TGG - chr4_1:8283601-8283620 Msa0533390:intron 30.0%
CTTTCAACACTCTATTTCAT+TGG + chr4_1:8283649-8283668 None:intergenic 30.0%
!! ATGAAATAGAGTGTTGAAAG+AGG - chr4_1:8283649-8283668 Msa0533390:intron 30.0%
!! TGAAATAGAGTGTTGAAAGA+GGG - chr4_1:8283650-8283669 Msa0533390:intron 30.0%
! TTGGGATTTTCTCTTTTAGT+TGG - chr4_1:8283697-8283716 Msa0533390:intron 30.0%
! TGTTTGGAATTTCCAAACAA+TGG - chr4_1:8283765-8283784 Msa0533390:intron 30.0%
! TTTTGCTCAAACCATTGTTT+GGG + chr4_1:8283820-8283839 None:intergenic 30.0%
GAATGTTGAAAAAAGACATG+TGG + chr4_1:8283888-8283907 None:intergenic 30.0%
TGAAATCATCTGTTATAGGT+TGG - chr4_1:8284086-8284105 Msa0533390:intron 30.0%
GAAATCATCTGTTATAGGTT+GGG - chr4_1:8284087-8284106 Msa0533390:intron 30.0%
AAATCATCTGTTATAGGTTG+GGG - chr4_1:8284088-8284107 Msa0533390:intron 30.0%
GAAGAATACATAAAGATCAG+TGG - chr4_1:8284164-8284183 Msa0533390:intron 30.0%
AAGGTAGTTGCATTCATTAA+GGG - chr4_1:8284335-8284354 Msa0533390:intron 30.0%
! CACTGAAAAAGTATAGCAAT+TGG - chr4_1:8284480-8284499 Msa0533390:intron 30.0%
AAAAATATCTGAGGGAATGT+AGG + chr4_1:8284506-8284525 None:intergenic 30.0%
!! TTCCCTCAGATATTTTTGAA+TGG - chr4_1:8284509-8284528 Msa0533390:intron 30.0%
CACCATTCAAAAATATCTGA+GGG + chr4_1:8284514-8284533 None:intergenic 30.0%
TCACCATTCAAAAATATCTG+AGG + chr4_1:8284515-8284534 None:intergenic 30.0%
! TTTTTGAATGGTGAACTTGT+TGG - chr4_1:8284521-8284540 Msa0533390:intron 30.0%
TAGAATGTGTGGAACATTAA+GGG - chr4_1:8284644-8284663 Msa0533390:CDS 30.0%
!!! CTTGTTTTAACACTTCTACT+CGG - chr4_1:8284771-8284790 Msa0533390:CDS 30.0%
TGATGTTAGCCATTGATGAA+TGG + chr4_1:8280265-8280284 None:intergenic 35.0%
AAGGGAAATGATGATAAGAG+AGG + chr4_1:8280310-8280329 None:intergenic 35.0%
!! GTATTTTGGGGAGAAAAAGA+AGG + chr4_1:8280329-8280348 None:intergenic 35.0%
GAAATTGAATGAAAGGGTAG+GGG + chr4_1:8280351-8280370 None:intergenic 35.0%
GGAAATTGAATGAAAGGGTA+GGG + chr4_1:8280352-8280371 None:intergenic 35.0%
TGGAAATTGAATGAAAGGGT+AGG + chr4_1:8280353-8280372 None:intergenic 35.0%
TACGCGGTTTATGATAAGAA+CGG - chr4_1:8280548-8280567 Msa0533390:three_prime_UTR 35.0%
TAATATTGCTGCTACTGTCT+CGG - chr4_1:8280598-8280617 Msa0533390:three_prime_UTR 35.0%
ACATTCTTAATTCCGGAGAT+AGG - chr4_1:8281142-8281161 Msa0533390:intron 35.0%
! TGATGTCTTGTTGAGTTTCA+AGG - chr4_1:8281216-8281235 Msa0533390:intron 35.0%
CCATCAACATCTATTCTAAG+AGG + chr4_1:8281409-8281428 None:intergenic 35.0%
CCTCTTAGAATAGATGTTGA+TGG - chr4_1:8281406-8281425 Msa0533390:intron 35.0%
TATGAAGCACAAACTCAGAT+AGG - chr4_1:8281434-8281453 Msa0533390:intron 35.0%
! TTTAATCATATGTGTCGGTG+TGG - chr4_1:8281513-8281532 Msa0533390:intron 35.0%
! TTAATCATATGTGTCGGTGT+GGG - chr4_1:8281514-8281533 Msa0533390:intron 35.0%
AAACGATACATGTCCATCAT+TGG - chr4_1:8281537-8281556 Msa0533390:intron 35.0%
AACGATACATGTCCATCATT+GGG - chr4_1:8281538-8281557 Msa0533390:intron 35.0%
TATGAAGCACAGATACTTCT+CGG + chr4_1:8281577-8281596 None:intergenic 35.0%
ATCTGTGCTTCATAGATGAA+AGG - chr4_1:8281583-8281602 Msa0533390:intron 35.0%
TTACACTGGGAATCATAATG+TGG + chr4_1:8281688-8281707 None:intergenic 35.0%
TTATGATTCCCAGTGTAACT+AGG - chr4_1:8281690-8281709 Msa0533390:intron 35.0%
TTTCTTAGCCTAGTTACACT+GGG + chr4_1:8281701-8281720 None:intergenic 35.0%
ATTTCTTAGCCTAGTTACAC+TGG + chr4_1:8281702-8281721 None:intergenic 35.0%
GAGTATCTGTGCTTTATAGA+TGG - chr4_1:8281902-8281921 Msa0533390:intron 35.0%
ATCTGTGCTTTATAGATGGA+AGG - chr4_1:8281906-8281925 Msa0533390:intron 35.0%
GATGGAAGGAAAAGAAAAAC+AGG - chr4_1:8281920-8281939 Msa0533390:intron 35.0%
TCTGCCTTTAATTCTCTACA+AGG - chr4_1:8282076-8282095 Msa0533390:intron 35.0%
CTGCCTTTAATTCTCTACAA+GGG - chr4_1:8282077-8282096 Msa0533390:intron 35.0%
!! GAAACATGGCTTTAAGTACT+AGG - chr4_1:8282321-8282340 Msa0533390:intron 35.0%
! TAAGAAACACTGGTTGAGTT+TGG - chr4_1:8282457-8282476 Msa0533390:intron 35.0%
GTTCGAGGGAAATTTAAGAA+AGG - chr4_1:8282533-8282552 Msa0533390:intron 35.0%
TTAAGAAAGGTCATAGGAGA+TGG - chr4_1:8282546-8282565 Msa0533390:intron 35.0%
TAAGAAAGGTCATAGGAGAT+GGG - chr4_1:8282547-8282566 Msa0533390:intron 35.0%
!! AGAGAAGAATGGATTAAGAG+TGG - chr4_1:8282726-8282745 Msa0533390:intron 35.0%
! ATGGATTAAGAGTGGTGAAT+TGG - chr4_1:8282734-8282753 Msa0533390:intron 35.0%
TAAGAGTGGTGAATTGGAAT+TGG - chr4_1:8282740-8282759 Msa0533390:intron 35.0%
ATTTCATTGGGAAGAAGAGT+TGG - chr4_1:8282774-8282793 Msa0533390:intron 35.0%
CATCTTCATTGCTCAGAAAA+AGG + chr4_1:8282908-8282927 None:intergenic 35.0%
!!! ACTAACACTGCCATTTTTAG+TGG + chr4_1:8282975-8282994 None:intergenic 35.0%
! CCTTAATTGGAAGCCTATTT+TGG + chr4_1:8283010-8283029 None:intergenic 35.0%
CCAAAATAGGCTTCCAATTA+AGG - chr4_1:8283007-8283026 Msa0533390:intron 35.0%
GCACTAATACTGTCCTTAAT+TGG + chr4_1:8283023-8283042 None:intergenic 35.0%
!! GTGAAAAGTTGGCTTTAGTT+TGG - chr4_1:8283056-8283075 Msa0533390:intron 35.0%
TCTCCAATGTCACAACTATT+TGG - chr4_1:8283080-8283099 Msa0533390:intron 35.0%
!!! TTTTAATTTGGAGAAGGTGG+TGG - chr4_1:8283138-8283157 Msa0533390:intron 35.0%
!!! AGGCAGAAATTTTAGCTTTG+AGG - chr4_1:8283164-8283183 Msa0533390:intron 35.0%
! TTTGCTTAAGGTGTCTGAAT+CGG - chr4_1:8283283-8283302 Msa0533390:intron 35.0%
TTGTCAGCACAATTTGCAAT+TGG - chr4_1:8283396-8283415 Msa0533390:intron 35.0%
ACAATTTGCAATTGGTGTGT+TGG - chr4_1:8283404-8283423 Msa0533390:intron 35.0%
CAATTTGCAATTGGTGTGTT+GGG - chr4_1:8283405-8283424 Msa0533390:intron 35.0%
TGAAACTGCTACAACAGAAT+TGG + chr4_1:8283451-8283470 None:intergenic 35.0%
! TTGTAGCAGTTTCATTTTCC+AGG - chr4_1:8283457-8283476 Msa0533390:intron 35.0%
! TGTAGCAGTTTCATTTTCCA+GGG - chr4_1:8283458-8283477 Msa0533390:intron 35.0%
TTTCCAAGAGTTATCGTGTT+TGG - chr4_1:8283737-8283756 Msa0533390:intron 35.0%
! TGTTTGGAATTCCCAAACAA+TGG - chr4_1:8283806-8283825 Msa0533390:intron 35.0%
! CTTTTGCTCAAACCATTGTT+TGG + chr4_1:8283821-8283840 None:intergenic 35.0%
!! CAAGTTGGTAAAAGAGAACA+AGG - chr4_1:8284316-8284335 Msa0533390:intron 35.0%
CAAGGTAGTTGCATTCATTA+AGG - chr4_1:8284334-8284353 Msa0533390:intron 35.0%
GTAGAATGTGTGGAACATTA+AGG - chr4_1:8284643-8284662 Msa0533390:CDS 35.0%
TTCAATGAAAGCTAAAGGAC+AGG + chr4_1:8284842-8284861 None:intergenic 35.0%
CAATATTGTTCCTATTGTGG+TGG - chr4_1:8284935-8284954 Msa0533390:CDS 35.0%
CTCAACTGACCATTCATCAA+TGG - chr4_1:8280253-8280272 Msa0533390:three_prime_UTR 40.0%
AGAGGAGTTGTGTAGAAGAA+AGG + chr4_1:8280292-8280311 None:intergenic 40.0%
!!! TGAAAGGGTAGGGGTATTTT+GGG + chr4_1:8280342-8280361 None:intergenic 40.0%
!!! ATGAAAGGGTAGGGGTATTT+TGG + chr4_1:8280343-8280362 None:intergenic 40.0%
GGGGTGGAAATTGAATGAAA+GGG + chr4_1:8280357-8280376 None:intergenic 40.0%
TGGGGTGGAAATTGAATGAA+AGG + chr4_1:8280358-8280377 None:intergenic 40.0%
TGTGGCATTAATGTAGCTTG+AGG - chr4_1:8280773-8280792 Msa0533390:CDS 40.0%
TTAATTCCGGAGATAGGTCA+TGG - chr4_1:8281148-8281167 Msa0533390:intron 40.0%
!! AAGCTTTGGGATAGAGTTGA+GGG - chr4_1:8281321-8281340 Msa0533390:intron 40.0%
ACACTCTCAGGGTTAAAGAA+AGG - chr4_1:8281349-8281368 Msa0533390:intron 40.0%
CACTCTCAGGGTTAAAGAAA+GGG - chr4_1:8281350-8281369 Msa0533390:intron 40.0%
TCTTCCTTTACTTCTCTGCA+AGG - chr4_1:8281780-8281799 Msa0533390:intron 40.0%
CTTCCTTTACTTCTCTGCAA+GGG - chr4_1:8281781-8281800 Msa0533390:intron 40.0%
TTACCCTTGCAGAGAAGTAA+AGG + chr4_1:8281787-8281806 None:intergenic 40.0%
TTACTTCTCTGCAAGGGTAA+TGG - chr4_1:8281787-8281806 Msa0533390:intron 40.0%
TGATGAAGGCTATCAGACTT+AGG - chr4_1:8281992-8282011 Msa0533390:intron 40.0%
GCAACATGCTAAAGTGGAAT+AGG - chr4_1:8282051-8282070 Msa0533390:intron 40.0%
ATCGAAAGGAAAGAATTGGC+CGG - chr4_1:8282148-8282167 Msa0533390:intron 40.0%
TACTATGCTCCTAAAACCAC+CGG + chr4_1:8282170-8282189 None:intergenic 40.0%
!! CATGGCTTTAAGTACTAGGA+AGG - chr4_1:8282325-8282344 Msa0533390:intron 40.0%
ATACGGTGATAGTTTGGAAG+TGG - chr4_1:8282434-8282453 Msa0533390:intron 40.0%
TTGGAAGTGGTAAGAAACAC+TGG - chr4_1:8282447-8282466 Msa0533390:intron 40.0%
! GAGTTTGGTGGAGAGATTTA+AGG - chr4_1:8282472-8282491 Msa0533390:intron 40.0%
AAGGTCTATATCGTCGATAC+CGG - chr4_1:8282491-8282510 Msa0533390:intron 40.0%
! GAGGAGGAAGCTATTTCATT+GGG - chr4_1:8282762-8282781 Msa0533390:intron 40.0%
TTGTAGGTGATAAAAAGCGG+AGG - chr4_1:8282818-8282837 Msa0533390:intron 40.0%
TGTAGGTGATAAAAAGCGGA+GGG - chr4_1:8282819-8282838 Msa0533390:intron 40.0%
GGAGAATGATAGATGAGAGT+GGG - chr4_1:8282842-8282861 Msa0533390:intron 40.0%
GAGAATGATAGATGAGAGTG+GGG - chr4_1:8282843-8282862 Msa0533390:intron 40.0%
CCTCTTTAACTGTGTATCTC+AGG + chr4_1:8282881-8282900 None:intergenic 40.0%
CCTGAGATACACAGTTAAAG+AGG - chr4_1:8282878-8282897 Msa0533390:intron 40.0%
TCTGAGCAATGAAGATGAAG+TGG - chr4_1:8282911-8282930 Msa0533390:intron 40.0%
CAATGAAGATGAAGTGGTTG+TGG - chr4_1:8282917-8282936 Msa0533390:intron 40.0%
AGTATTAGTGCGAGATCAGA+TGG - chr4_1:8283032-8283051 Msa0533390:intron 40.0%
GATCAGATGGTGTGAAAAGT+TGG - chr4_1:8283045-8283064 Msa0533390:intron 40.0%
TTGGAAAACTAGGAATGCGA+TGG - chr4_1:8283099-8283118 Msa0533390:intron 40.0%
! CTAGGAATGCGATGGTTTTT+AGG - chr4_1:8283107-8283126 Msa0533390:intron 40.0%
TTTCCCTGCTTGTTTGCTTA+AGG - chr4_1:8283271-8283290 Msa0533390:intron 40.0%
ACACCTTAAGCAAACAAGCA+GGG + chr4_1:8283277-8283296 None:intergenic 40.0%
! TTTCTGGTGTAGCGATTCTA+GGG - chr4_1:8283488-8283507 Msa0533390:intron 40.0%
! TTTGTGCTGTTATACTGCTG+TGG - chr4_1:8283525-8283544 Msa0533390:intron 40.0%
!! TGCTGTGGTTGATTTTTCTG+TGG - chr4_1:8283540-8283559 Msa0533390:intron 40.0%
!! TGGTTGATTTTTCTGTGGAG+TGG - chr4_1:8283545-8283564 Msa0533390:intron 40.0%
!! TGTGGAGTGGCTTTTTAGTA+TGG - chr4_1:8283558-8283577 Msa0533390:intron 40.0%
TGCATTGAAGAAGTCTCATC+TGG + chr4_1:8283595-8283614 None:intergenic 40.0%
GAACCAAACACGATAACTCT+TGG + chr4_1:8283743-8283762 None:intergenic 40.0%
!! ATCGTGTTTGGTTCTGTGTT+TGG - chr4_1:8283749-8283768 Msa0533390:intron 40.0%
CAAACACGGTAACCATTGTT+TGG + chr4_1:8283780-8283799 None:intergenic 40.0%
CAAACAATGGTTACCGTGTT+TGG - chr4_1:8283778-8283797 Msa0533390:intron 40.0%
TCCAAACACAGAACCAAACA+CGG + chr4_1:8283753-8283772 None:intergenic 40.0%
AAGACCACAACCTAAGAAGA+AGG - chr4_1:8284229-8284248 Msa0533390:intron 40.0%
GGTAGTAGGCATTCTTGAAA+AGG - chr4_1:8284394-8284413 Msa0533390:intron 40.0%
GTAGGCATTCTTGAAAAGGA+AGG - chr4_1:8284398-8284417 Msa0533390:intron 40.0%
!! TTGAATGGTGAACTTGTTGG+TGG - chr4_1:8284524-8284543 Msa0533390:intron 40.0%
TTGACCTCCATGTTTGAGAA+AGG - chr4_1:8284557-8284576 Msa0533390:intron 40.0%
TTCACCTTTCTCAAACATGG+AGG + chr4_1:8284564-8284583 None:intergenic 40.0%
CACTTCACCTTTCTCAAACA+TGG + chr4_1:8284567-8284586 None:intergenic 40.0%
CATGTTTGAGAAAGGTGAAG+TGG - chr4_1:8284565-8284584 Msa0533390:CDS 40.0%
CATTAAGGGAAGAGAAATGC+AGG - chr4_1:8284658-8284677 Msa0533390:CDS 40.0%
TACGAACAATCCACCACAAT+AGG + chr4_1:8284948-8284967 None:intergenic 40.0%
!!! GAAAGGGTAGGGGTATTTTG+GGG + chr4_1:8280341-8280360 None:intergenic 45.0%
GGTAGGGTTTGAGGGAAATT+GGG + chr4_1:8280400-8280419 None:intergenic 45.0%
TGGTAGGGTTTGAGGGAAAT+TGG + chr4_1:8280401-8280420 None:intergenic 45.0%
! CCGGTGATTTCATCGTTTTC+CGG + chr4_1:8280500-8280519 None:intergenic 45.0%
CCGGAAAACGATGAAATCAC+CGG - chr4_1:8280497-8280516 Msa0533390:three_prime_UTR 45.0%
AACGGTGAGCTTCAGTTCAT+CGG - chr4_1:8280566-8280585 Msa0533390:three_prime_UTR 45.0%
CAATCTCCATGACCTATCTC+CGG + chr4_1:8281157-8281176 None:intergenic 45.0%
AGTTGCTCCCACAACGAAAT+TGG + chr4_1:8281193-8281212 None:intergenic 45.0%
!! GAAGCTTTGGGATAGAGTTG+AGG - chr4_1:8281320-8281339 Msa0533390:intron 45.0%
!! AGCTTTGGGATAGAGTTGAG+GGG - chr4_1:8281322-8281341 Msa0533390:intron 45.0%
TTGAGGGGATATACACTCTC+AGG - chr4_1:8281337-8281356 Msa0533390:intron 45.0%
TGAGGGGATATACACTCTCA+GGG - chr4_1:8281338-8281357 Msa0533390:intron 45.0%
GCACAAACTCAGATAGGAAC+AGG - chr4_1:8281440-8281459 Msa0533390:intron 45.0%
ACTCAGATAGGAACAGGACA+CGG - chr4_1:8281446-8281465 Msa0533390:intron 45.0%
TTAGGCGTTTGTCCCAATGA+TGG + chr4_1:8281553-8281572 None:intergenic 45.0%
GCACAGATACTTCTCGGATT+AGG + chr4_1:8281571-8281590 None:intergenic 45.0%
GCAACATGCTGAAGTGGAAT+TGG - chr4_1:8281755-8281774 Msa0533390:intron 45.0%
!! TCTCTGCAAGGGTAATGGAA+AGG - chr4_1:8281792-8281811 Msa0533390:intron 45.0%
GCACAGATACTCCTCAGATT+AGG + chr4_1:8281894-8281913 None:intergenic 45.0%
GGGAAAGCAACATGCTAAAG+TGG - chr4_1:8282045-8282064 Msa0533390:intron 45.0%
!! TCTCTACAAGGGTAACGGAA+AGG - chr4_1:8282088-8282107 Msa0533390:intron 45.0%
! AAGAATTGGCCGGTGGTTTT+AGG - chr4_1:8282158-8282177 Msa0533390:intron 45.0%
! GAAACACTGGTTGAGTTTGG+TGG - chr4_1:8282460-8282479 Msa0533390:intron 45.0%
AGGTCTATATCGTCGATACC+GGG - chr4_1:8282492-8282511 Msa0533390:intron 45.0%
GACATGGTCGTAGAGAAGAA+TGG - chr4_1:8282715-8282734 Msa0533390:intron 45.0%
GAGTGGTGAATTGGAATTGG+AGG - chr4_1:8282743-8282762 Msa0533390:intron 45.0%
TGGTGAATTGGAATTGGAGG+AGG - chr4_1:8282746-8282765 Msa0533390:intron 45.0%
! GGAGGAGGAAGCTATTTCAT+TGG - chr4_1:8282761-8282780 Msa0533390:intron 45.0%
TCATTGGGAAGAAGAGTTGG+TGG - chr4_1:8282777-8282796 Msa0533390:intron 45.0%
! GTTGGTGGAAGTATGTCAAG+CGG - chr4_1:8282792-8282811 Msa0533390:intron 45.0%
GTATGTCAAGCGGTAGTTGT+AGG - chr4_1:8282802-8282821 Msa0533390:intron 45.0%
GTAGGTGATAAAAAGCGGAG+GGG - chr4_1:8282820-8282839 Msa0533390:intron 45.0%
TAGGTGATAAAAAGCGGAGG+GGG - chr4_1:8282821-8282840 Msa0533390:intron 45.0%
GGGAGAATGATAGATGAGAG+TGG - chr4_1:8282841-8282860 Msa0533390:intron 45.0%
AATGATAGATGAGAGTGGGG+AGG - chr4_1:8282846-8282865 Msa0533390:intron 45.0%
! TAATTTGGAGAAGGTGGTGG+AGG - chr4_1:8283141-8283160 Msa0533390:intron 45.0%
TTGCGTGTTCTGGTATTGCT+TGG - chr4_1:8283234-8283253 Msa0533390:intron 45.0%
TGTTCTGGTATTGCTTGGTC+AGG - chr4_1:8283239-8283258 Msa0533390:intron 45.0%
GACACCTTAAGCAAACAAGC+AGG + chr4_1:8283278-8283297 None:intergenic 45.0%
TGAGATGGTGCAATGTTAGC+AGG - chr4_1:8283309-8283328 Msa0533390:intron 45.0%
GAGATGGTGCAATGTTAGCA+GGG - chr4_1:8283310-8283329 Msa0533390:intron 45.0%
AGATGGTGCAATGTTAGCAG+GGG - chr4_1:8283311-8283330 Msa0533390:intron 45.0%
GATGCAACTGCAAGCAAACA+AGG + chr4_1:8283356-8283375 None:intergenic 45.0%
TTGCATCTTCGTCTGTGCAT+TGG - chr4_1:8283369-8283388 Msa0533390:intron 45.0%
TTTCCAGGGTCGAATGTTTC+TGG - chr4_1:8283472-8283491 Msa0533390:intron 45.0%
!! GTTTCTGGTGTAGCGATTCT+AGG - chr4_1:8283487-8283506 Msa0533390:intron 45.0%
!! ACCGTGTTTGGTTCTGTGTT+TGG - chr4_1:8283790-8283809 Msa0533390:intron 45.0%
! TCTGTTATAGGTTGGGGTAG+TGG - chr4_1:8284094-8284113 Msa0533390:intron 45.0%
TGGGTCAAAGATTCTCTGTC+AGG + chr4_1:8284125-8284144 None:intergenic 45.0%
GTTCCACCTGGAAATGAATC+CGG - chr4_1:8284191-8284210 Msa0533390:intron 45.0%
TTTCCGGATTCATTTCCAGG+TGG + chr4_1:8284197-8284216 None:intergenic 45.0%
! TCAGCCTTCTTCTTAGGTTG+TGG + chr4_1:8284236-8284255 None:intergenic 45.0%
CGAAGATCAGCCTTCTTCTT+AGG + chr4_1:8284242-8284261 None:intergenic 45.0%
GCTGATCTTCGATTAACACC+TGG - chr4_1:8284251-8284270 Msa0533390:intron 45.0%
TGTCGACAAGCTCTTCAAGA+GGG + chr4_1:8284298-8284317 None:intergenic 45.0%
TTGTCGACAAGCTCTTCAAG+AGG + chr4_1:8284299-8284318 None:intergenic 45.0%
TGAAGAGCTTGTCGACAAGT+TGG - chr4_1:8284301-8284320 Msa0533390:intron 45.0%
!! TCTAGAAGTGCTCCGTTATG+CGG - chr4_1:8284359-8284378 Msa0533390:intron 45.0%
! CTCTGAGAGAATCCGCATAA+CGG + chr4_1:8284374-8284393 None:intergenic 45.0%
GTTATGCGGATTCTCTCAGA+GGG - chr4_1:8284373-8284392 Msa0533390:intron 45.0%
TTTGAGAAAGGTGAAGTGGC+TGG - chr4_1:8284569-8284588 Msa0533390:CDS 45.0%
GTTCCACACATTCTACTCCT+AGG + chr4_1:8284639-8284658 None:intergenic 45.0%
GTAGGTTTGTGGAGGAGTTG+GGG + chr4_1:8280376-8280395 None:intergenic 50.0%
CGTAGGTTTGTGGAGGAGTT+GGG + chr4_1:8280377-8280396 None:intergenic 50.0%
AATTGGGCGTAGGTTTGTGG+AGG + chr4_1:8280384-8280403 None:intergenic 50.0%
GGAAATTGGGCGTAGGTTTG+TGG + chr4_1:8280387-8280406 None:intergenic 50.0%
GTTTGAGGGAAATTGGGCGT+AGG + chr4_1:8280394-8280413 None:intergenic 50.0%
! GGCGAGATTTTTCACTGCCA+TGG + chr4_1:8280453-8280472 None:intergenic 50.0%
AAATCTCGCCGATACGTCAC+CGG - chr4_1:8280463-8280482 Msa0533390:three_prime_UTR 50.0%
TTAACGGAGCCACAAAGCTC+CGG + chr4_1:8280641-8280660 None:intergenic 50.0%
GGGAAAGCAACATGCTGAAG+TGG - chr4_1:8281749-8281768 Msa0533390:intron 50.0%
GACACGATACGTATCCGACA+CGG - chr4_1:8281861-8281880 Msa0533390:intron 50.0%
ACACGATACGTATCCGACAC+GGG - chr4_1:8281862-8281881 Msa0533390:intron 50.0%
GAAAGGAAAGAATTGGCCGG+TGG - chr4_1:8282151-8282170 Msa0533390:intron 50.0%
AAGGTCATAGGAGATGGGAG+AGG - chr4_1:8282552-8282571 Msa0533390:intron 50.0%
!! ATGGGAGAGGTACCAAGTTC+TGG - chr4_1:8282565-8282584 Msa0533390:intron 50.0%
!! GAGAGGTACCAAGTTCTGGA+CGG - chr4_1:8282569-8282588 Msa0533390:intron 50.0%
!! CAAGTTCTGGACGGATCTGT+GGG - chr4_1:8282578-8282597 Msa0533390:intron 50.0%
! GGGGATCTCTTTTGCAGACA+TGG - chr4_1:8282699-8282718 Msa0533390:intron 50.0%
ATAGATGAGAGTGGGGAGGA+GGG - chr4_1:8282850-8282869 Msa0533390:intron 50.0%
TTAACCAGGCTTGCGTGTTC+TGG - chr4_1:8283224-8283243 Msa0533390:intron 50.0%
AATACCAGAACACGCAAGCC+TGG + chr4_1:8283231-8283250 None:intergenic 50.0%
GGTATTGCTTGGTCAGGTGT+TGG - chr4_1:8283245-8283264 Msa0533390:intron 50.0%
! GCTTAAGGTGTCTGAATCGG+AGG - chr4_1:8283286-8283305 Msa0533390:intron 50.0%
TGTCTGAATCGGAGGTGAGA+TGG - chr4_1:8283294-8283313 Msa0533390:intron 50.0%
CATCTTCGTCTGTGCATTGG+AGG - chr4_1:8283372-8283391 Msa0533390:intron 50.0%
ACACCAGAAACATTCGACCC+TGG + chr4_1:8283478-8283497 None:intergenic 50.0%
! GGTGTAGCGATTCTAGGGAT+CGG - chr4_1:8283493-8283512 Msa0533390:intron 50.0%
GAGAATCTTTGACCCAAGCG+TGG - chr4_1:8284129-8284148 Msa0533390:intron 50.0%
CATCCAAGACTTCCACGCTT+GGG + chr4_1:8284144-8284163 None:intergenic 50.0%
ATCAGTGGGAAAGTTCCACC+TGG - chr4_1:8284179-8284198 Msa0533390:intron 50.0%
GCGTTTCCGGATTCATTTCC+AGG + chr4_1:8284200-8284219 None:intergenic 50.0%
ATGAATCCGGAAACGCCACT+TGG - chr4_1:8284204-8284223 Msa0533390:intron 50.0%
TGAATCCGGAAACGCCACTT+GGG - chr4_1:8284205-8284224 Msa0533390:intron 50.0%
TCTTACCCAAGTGGCGTTTC+CGG + chr4_1:8284213-8284232 None:intergenic 50.0%
! AGGTTGTGGTCTTACCCAAG+TGG + chr4_1:8284222-8284241 None:intergenic 50.0%
CGTTATGCGGATTCTCTCAG+AGG - chr4_1:8284372-8284391 Msa0533390:intron 50.0%
GGATTCTCTCAGAGGGTAGT+AGG - chr4_1:8284380-8284399 Msa0533390:intron 50.0%
GAGCCTAGGAGTAGAATGTG+TGG - chr4_1:8284633-8284652 Msa0533390:CDS 50.0%
GCGTAGGTTTGTGGAGGAGT+TGG + chr4_1:8280378-8280397 None:intergenic 55.0%
TCGGGGATGGTAGGGTTTGA+GGG + chr4_1:8280408-8280427 None:intergenic 55.0%
TTCGGGGATGGTAGGGTTTG+AGG + chr4_1:8280409-8280428 None:intergenic 55.0%
TGAGGCTTTCGGGGATGGTA+GGG + chr4_1:8280416-8280435 None:intergenic 55.0%
ATGACTGAGGCTTTCGGGGA+TGG + chr4_1:8280421-8280440 None:intergenic 55.0%
ATCCCCGAAAGCCTCAGTCA+TGG - chr4_1:8280420-8280439 Msa0533390:three_prime_UTR 55.0%
AGCCATGACTGAGGCTTTCG+GGG + chr4_1:8280425-8280444 None:intergenic 55.0%
GAGCCATGACTGAGGCTTTC+GGG + chr4_1:8280426-8280445 None:intergenic 55.0%
CGAGCCATGACTGAGGCTTT+CGG + chr4_1:8280427-8280446 None:intergenic 55.0%
CACAGTCACCGGTGACGTAT+CGG + chr4_1:8280474-8280493 None:intergenic 55.0%
! TTTTCCGGCGACACAGTCAC+CGG + chr4_1:8280485-8280504 None:intergenic 55.0%
CACCGGAGAAGAACTTCCGT+CGG - chr4_1:8280514-8280533 Msa0533390:three_prime_UTR 55.0%
ACCGGAGAAGAACTTCCGTC+GGG - chr4_1:8280515-8280534 Msa0533390:three_prime_UTR 55.0%
ACCCGACGGAAGTTCTTCTC+CGG + chr4_1:8280519-8280538 None:intergenic 55.0%
TGTCTCGGCTCACCGGAAAT+CGG - chr4_1:8280613-8280632 Msa0533390:exon 55.0%
!! AAAGCTCCGGCACCGATTTC+CGG + chr4_1:8280628-8280647 None:intergenic 55.0%
!! AAATCGGTGCCGGAGCTTTG+TGG - chr4_1:8280629-8280648 Msa0533390:CDS 55.0%
! GGAGCTTTGTGGCTCCGTTA+AGG - chr4_1:8280640-8280659 Msa0533390:CDS 55.0%
GATTAGGCGTGTACCCGTGT+CGG + chr4_1:8281878-8281897 None:intergenic 55.0%
ACGGGTACACGCCTAATCTG+AGG - chr4_1:8281880-8281899 Msa0533390:intron 55.0%
ATATCGTCGATACCGGGACC+TGG - chr4_1:8282498-8282517 Msa0533390:intron 55.0%
CCACAGATCCGTCCAGAACT+TGG + chr4_1:8282580-8282599 None:intergenic 55.0%
!! CCAAGTTCTGGACGGATCTG+TGG - chr4_1:8282577-8282596 Msa0533390:intron 55.0%
! TGGACGGATCTGTGGGTTGA+TGG - chr4_1:8282585-8282604 Msa0533390:intron 55.0%
GATAGATGAGAGTGGGGAGG+AGG - chr4_1:8282849-8282868 Msa0533390:intron 55.0%
!! TTTGGAGAAGGTGGTGGAGG+AGG - chr4_1:8283144-8283163 Msa0533390:intron 55.0%
GTGCAATGTTAGCAGGGGCT+TGG - chr4_1:8283316-8283335 Msa0533390:intron 55.0%
TGACCCAAGCGTGGAAGTCT+TGG - chr4_1:8284138-8284157 Msa0533390:intron 55.0%
CCATCCAAGACTTCCACGCT+TGG + chr4_1:8284145-8284164 None:intergenic 55.0%
CCAAGCGTGGAAGTCTTGGA+TGG - chr4_1:8284142-8284161 Msa0533390:intron 55.0%
GTTAGTTGCACGTGACGACC+AGG + chr4_1:8284272-8284291 None:intergenic 55.0%
! ATTGTGCCGGTGAACCTGCT+AGG - chr4_1:8284611-8284630 Msa0533390:CDS 55.0%
TAGGCTCCTAGCAGGTTCAC+CGG + chr4_1:8284620-8284639 None:intergenic 55.0%
TCTACTCCTAGGCTCCTAGC+AGG + chr4_1:8284628-8284647 None:intergenic 55.0%
GGTTTGTGGAGGAGTTGGGG+TGG + chr4_1:8280373-8280392 None:intergenic 60.0%
CTGAGGCTTTCGGGGATGGT+AGG + chr4_1:8280417-8280436 None:intergenic 60.0%
ATGGCGACGAGCCATGACTG+AGG + chr4_1:8280434-8280453 None:intergenic 60.0%
TCAGTCATGGCTCGTCGCCA+TGG - chr4_1:8280433-8280452 Msa0533390:three_prime_UTR 60.0%
GAAGAACTTCCGTCGGGTGC+TGG - chr4_1:8280521-8280540 Msa0533390:three_prime_UTR 60.0%
GCGTAAACTCCAGCACCCGA+CGG + chr4_1:8280533-8280552 None:intergenic 60.0%
!! GTCGGGTGCTGGAGTTTACG+CGG - chr4_1:8280532-8280551 Msa0533390:three_prime_UTR 60.0%
CTGCTACTGTCTCGGCTCAC+CGG - chr4_1:8280606-8280625 Msa0533390:exon 60.0%
ATACCGGGACCTGGTGGTAC+AGG - chr4_1:8282507-8282526 Msa0533390:intron 60.0%
TACCGGGACCTGGTGGTACA+GGG - chr4_1:8282508-8282527 Msa0533390:intron 60.0%
TCGAACCACCCTGTACCACC+AGG + chr4_1:8282519-8282538 None:intergenic 60.0%
TGGTGGTACAGGGTGGTTCG+AGG - chr4_1:8282518-8282537 Msa0533390:intron 60.0%
GGTGGTACAGGGTGGTTCGA+GGG - chr4_1:8282519-8282538 Msa0533390:intron 60.0%
ATGAGAGTGGGGAGGAGGGA+GGG - chr4_1:8282854-8282873 Msa0533390:intron 60.0%
GGTGAACCTGCTAGGAGCCT+AGG - chr4_1:8284619-8284638 Msa0533390:CDS 60.0%
GTCACCGGTGACTGTGTCGC+CGG - chr4_1:8280478-8280497 Msa0533390:three_prime_UTR 65.0%
GGCTCACCGGAAATCGGTGC+CGG - chr4_1:8280619-8280638 Msa0533390:CDS 65.0%
TCGTCGATACCGGGACCTGG+TGG - chr4_1:8282501-8282520 Msa0533390:intron 65.0%
CACCCTGTACCACCAGGTCC+CGG + chr4_1:8282513-8282532 None:intergenic 65.0%
GATGAGAGTGGGGAGGAGGG+AGG - chr4_1:8282853-8282872 Msa0533390:intron 65.0%
CGGGACCTGGTGGTACAGGG+TGG - chr4_1:8282511-8282530 Msa0533390:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 8280226 8285000 8280226 ID=Msa0533390;Name=Msa0533390
chr4_1 mRNA 8280226 8285000 8280226 ID=Msa0533390-mRNA-1;Parent=Msa0533390;Name=Msa0533390-mRNA-1;_AED=0.35;_eAED=0.35;_QI=46|1|1|1|0|1|2|393|297
chr4_1 exon 8280226 8281122 8280226 ID=Msa0533390-mRNA-1:exon:2818;Parent=Msa0533390-mRNA-1
chr4_1 exon 8284565 8285000 8284565 ID=Msa0533390-mRNA-1:exon:2817;Parent=Msa0533390-mRNA-1
chr4_1 five_prime_UTR 8284955 8285000 8284955 ID=Msa0533390-mRNA-1:five_prime_utr;Parent=Msa0533390-mRNA-1
chr4_1 CDS 8284565 8284954 8284565 ID=Msa0533390-mRNA-1:cds;Parent=Msa0533390-mRNA-1
chr4_1 CDS 8280619 8281122 8280619 ID=Msa0533390-mRNA-1:cds;Parent=Msa0533390-mRNA-1
chr4_1 three_prime_UTR 8280226 8280618 8280226 ID=Msa0533390-mRNA-1:three_prime_utr;Parent=Msa0533390-mRNA-1
Gene Sequence

>Msa0533390

ATGGCTAACATCATCAACCTTTCTTCTACACAACTCCTCTCTTATCATCATTTCCCTTCTTTTTCTCCCCAAAATACCCCTACCCTTTCATTCAATTTCCACCCCAACTCCTCCACAAACCTACGCCCAATTTCCCTCAAACCCTACCATCCCCGAAAGCCTCAGTCATGGCTCGTCGCCATGGCAGTGAAAAATCTCGCCGATACGTCACCGGTGACTGTGTCGCCGGAAAACGATGAAATCACCGGAGAAGAACTTCCGTCGGGTGCTGGAGTTTACGCGGTTTATGATAAGAACGGTGAGCTTCAGTTCATCGGTTTGTCGCGTAATATTGCTGCTACTGTCTCGGCTCACCGGAAATCGGTGCCGGAGCTTTGTGGCTCCGTTAAGGTTGGGGTAGTGGATGAACCTGACAGAGAATCTTTGACCCAAGCGTGGAAGTCTTGGATGGAAGAATACATAAAGATCAGTGGGAAAGTTCCACCTGGAAATGAATCCGGAAACGCCACTTGGGTAAGACCACAACCTAAGAAGAAGGCTGATCTTCGATTAACACCTGGTCGTCACGTGCAACTAACTGTCCCTCTTGAAGAGCTTGTCGACAAGTTGGTAAAAGAGAACAAGGTAGTTGCATTCATTAAGGGATCTAGAAGTGCTCCGTTATGCGGATTCTCTCAGAGGGTAGTAGGCATTCTTGAAAAGGAAGGAGTAGATTATGAGAGTGTAAATGTATTGGATGAAGATTATAACTATGGATTGAGGGAGACACTGAAAAAGTATAGCAATTGGCCTACATTCCCTCAGATATTTTTGAATGGTGAACTTGTTGGTGGTTGTGATATATTGACCTCCATGTTTGAGAAAGGTGAAGTGGCTGGTTTGTTCAAAAAGTAA
Protein sequence

>Msa0533390

MANIINLSSTQLLSYHHFPSFSPQNTPTLSFNFHPNSSTNLRPISLKPYHPRKPQSWLVAMAVKNLADTSPVTVSPENDEITGEELPSGAGVYAVYDKNGELQFIGLSRNIAATVSAHRKSVPELCGSVKVGVVDEPDRESLTQAWKSWMEEYIKISGKVPPGNESGNATWVRPQPKKKADLRLTPGRHVQLTVPLEELVDKLVKENKVVAFIKGSRSAPLCGFSQRVVGILEKEGVDYESVNVLDEDYNYGLRETLKKYSNWPTFPQIFLNGELVGGCDILTSMFEKGEVAGLFKK*