AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0142390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142390 MtrunA17_Chr4g0076731 93.946 446 9 6 1 440 1 434 0.0 855
Msa0142390 MtrunA17_Chr5g0417001 48.276 203 90 4 48 239 5 203 1.05e-60 202
Msa0142390 MtrunA17_Chr6g0453131 52.695 167 68 2 50 205 8 174 2.80e-60 201
Msa0142390 MtrunA17_Chr5g0442771 43.796 274 119 9 45 288 6 274 1.55e-59 197
Msa0142390 MtrunA17_Chr8g0361731 53.049 164 65 3 54 205 11 174 2.13e-59 199
Msa0142390 MtrunA17_Chr4g0038751 53.947 152 65 2 56 205 14 162 2.07e-56 188
Msa0142390 MtrunA17_Chr8g0359921 58.000 150 58 2 59 204 16 164 2.20e-55 186
Msa0142390 MtrunA17_Chr2g0318081 56.051 157 62 3 59 211 18 171 2.51e-55 187
Msa0142390 MtrunA17_Chr3g0124761 55.000 160 64 3 59 212 9 166 4.60e-54 182
Msa0142390 MtrunA17_Chr2g0318101 50.299 167 69 2 59 211 17 183 1.12e-53 183
Msa0142390 MtrunA17_Chr4g0047841 47.283 184 71 3 54 211 12 195 1.28e-52 180
Msa0142390 MtrunA17_Chr3g0130731 53.595 153 64 2 59 206 9 159 1.48e-52 178
Msa0142390 MtrunA17_Chr8g0384721 53.247 154 64 2 59 206 9 160 3.53e-52 177
Msa0142390 MtrunA17_Chr6g0481091 52.288 153 68 3 59 207 8 159 1.53e-51 174
Msa0142390 MtrunA17_Chr7g0252971 43.564 202 87 4 59 244 10 200 3.19e-51 176
Msa0142390 MtrunA17_Chr2g0311651 50.562 178 66 5 44 204 14 186 5.72e-51 174
Msa0142390 MtrunA17_Chr2g0311661 50.562 178 65 5 44 204 14 185 5.79e-51 174
Msa0142390 MtrunA17_Chr3g0109821 52.597 154 67 3 59 207 8 160 1.59e-50 181
Msa0142390 MtrunA17_Chr2g0326361 45.745 188 87 5 59 232 16 202 2.02e-50 173
Msa0142390 MtrunA17_Chr2g0309891 51.316 152 68 3 59 205 8 158 4.52e-50 173
Msa0142390 MtrunA17_Chr5g0400461 51.299 154 66 3 59 204 8 160 2.36e-49 171
Msa0142390 MtrunA17_Chr5g0417791 48.810 168 70 5 59 212 5 170 5.38e-49 167
Msa0142390 MtrunA17_Chr5g0433781 52.288 153 68 3 59 207 8 159 1.25e-48 176
Msa0142390 MtrunA17_Chr4g0042561 50.658 152 68 3 59 204 11 161 1.44e-48 167
Msa0142390 MtrunA17_Chr7g0263931 48.795 166 78 2 48 206 2 167 2.78e-48 168
Msa0142390 MtrunA17_Chr3g0139331 49.032 155 78 1 53 206 7 161 7.51e-48 167
Msa0142390 MtrunA17_Chr6g0484441 48.077 156 74 2 59 211 7 158 2.33e-47 165
Msa0142390 MtrunA17_Chr4g0054791 52.632 152 66 3 59 204 8 159 3.78e-47 164
Msa0142390 MtrunA17_Chr4g0056541 48.344 151 74 2 57 204 7 156 6.21e-47 165
Msa0142390 MtrunA17_Chr5g0398971 47.712 153 74 3 57 204 7 158 1.62e-46 164
Msa0142390 MtrunA17_Chr2g0316971 51.316 152 69 2 59 205 25 176 3.47e-46 164
Msa0142390 MtrunA17_Chr4g0060931 46.927 179 81 5 43 212 4 177 3.84e-46 163
Msa0142390 MtrunA17_Chr4g0018391 47.682 151 75 2 57 204 7 156 3.89e-46 162
Msa0142390 MtrunA17_Chr8g0364791 46.154 156 75 4 57 206 6 158 6.05e-46 164
Msa0142390 MtrunA17_Chr2g0309331 48.026 152 76 1 56 204 9 160 6.32e-46 162
Msa0142390 MtrunA17_Chr3g0091921 48.701 154 74 2 56 205 15 167 2.18e-45 159
Msa0142390 MtrunA17_Chr8g0384201 44.872 156 77 4 57 206 6 158 3.33e-45 164
Msa0142390 MtrunA17_Chr5g0428991 52.349 149 66 3 60 204 28 175 4.87e-45 166
Msa0142390 MtrunA17_Chr6g0453451 50.649 154 69 3 59 207 22 173 6.03e-45 159
Msa0142390 MtrunA17_Chr1g0147421 46.012 163 85 3 53 212 23 185 1.23e-44 159
Msa0142390 MtrunA17_Chr1g0201021 50.327 153 71 3 58 206 20 171 1.42e-44 163
Msa0142390 MtrunA17_Chr4g0017921 46.753 154 77 3 57 207 8 159 2.24e-44 158
Msa0142390 MtrunA17_Chr3g0130101 45.570 158 81 3 53 206 3 159 7.82e-44 157
Msa0142390 MtrunA17_Chr5g0405211 45.223 157 82 2 51 204 2 157 8.06e-44 157
Msa0142390 MtrunA17_Chr3g0128151 49.664 149 70 3 60 204 25 172 1.61e-43 160
Msa0142390 MtrunA17_Chr3g0128111 40.513 195 100 5 15 204 9 192 3.25e-43 152
Msa0142390 MtrunA17_Chr1g0200561 44.654 159 84 2 56 211 18 175 4.32e-43 155
Msa0142390 MtrunA17_Chr3g0144271 45.087 173 89 4 39 205 4 176 9.90e-43 155
Msa0142390 MtrunA17_Chr8g0372121 46.711 152 77 2 56 204 5 155 2.18e-42 152
Msa0142390 MtrunA17_Chr7g0253011 47.059 153 74 3 59 204 19 171 1.15e-41 152
Msa0142390 MtrunA17_Chr1g0197351 48.447 161 72 3 57 207 42 201 2.46e-41 153
Msa0142390 MtrunA17_Chr6g0461661 48.252 143 64 2 60 201 21 154 4.10e-41 150
Msa0142390 MtrunA17_Chr3g0092671 44.737 152 79 4 59 206 7 157 1.39e-40 152
Msa0142390 MtrunA17_Chr1g0183741 41.176 204 99 6 59 244 12 212 1.76e-40 145
Msa0142390 MtrunA17_Chr8g0346001 42.593 162 78 3 57 204 15 175 1.84e-40 149
Msa0142390 MtrunA17_Chr2g0312321 37.903 248 128 8 59 290 13 250 2.02e-40 146
Msa0142390 MtrunA17_Chr7g0217721 42.593 162 75 2 60 204 22 182 2.23e-39 145
Msa0142390 MtrunA17_Chr7g0214071 45.614 171 85 4 59 226 17 182 6.74e-39 140
Msa0142390 MtrunA17_Chr7g0261411 47.945 146 71 3 59 202 12 154 9.39e-39 141
Msa0142390 MtrunA17_Chr7g0217711 50.806 124 60 1 60 183 22 144 1.57e-38 137
Msa0142390 MtrunA17_Chr1g0197361 42.105 152 83 4 59 206 10 160 1.60e-38 147
Msa0142390 MtrunA17_Chr4g0026141 39.196 199 104 5 54 235 2 200 2.50e-38 139
Msa0142390 MtrunA17_Chr7g0266701 40.854 164 84 4 55 205 2 165 6.77e-38 138
Msa0142390 MtrunA17_Chr2g0321631 43.478 161 76 4 59 206 6 164 1.87e-37 137
Msa0142390 MtrunA17_Chr8g0385991 46.250 160 74 5 59 208 16 173 2.80e-37 135
Msa0142390 MtrunA17_Chr8g0345671 45.223 157 71 8 52 201 7 155 5.92e-34 131
Msa0142390 MtrunA17_Chr3g0131911 41.463 164 81 4 59 209 16 177 1.36e-32 123
Msa0142390 MtrunA17_Chr8g0345691 42.384 151 79 5 55 201 10 156 2.37e-31 124
Msa0142390 MtrunA17_Chr8g0345711 42.424 132 71 4 54 181 9 139 5.02e-29 112
Msa0142390 MtrunA17_Chr2g0321741 48.113 106 53 2 77 181 12 116 1.55e-28 115
Msa0142390 MtrunA17_Chr3g0113001 38.342 193 78 7 102 268 10 187 3.65e-26 107
Msa0142390 MtrunA17_Chr4g0050701 38.065 155 79 3 59 204 13 159 5.72e-26 104
Msa0142390 MtrunA17_Chr8g0345731 40.602 133 73 4 55 181 22 154 9.04e-24 97.4
Msa0142390 MtrunA17_Chr7g0243371 57.333 75 31 1 110 183 17 91 9.65e-23 92.8
Msa0142390 MtrunA17_Chr8g0345721 36.774 155 64 5 60 181 38 191 1.96e-22 95.1
Msa0142390 MtrunA17_Chr8g0345741 35.948 153 82 6 68 212 2 146 8.65e-21 88.6
Msa0142390 MtrunA17_Chr8g0345701 39.474 152 69 8 58 189 7 155 2.14e-20 88.2
Msa0142390 MtrunA17_Chr8g0384351 36.986 146 73 5 59 204 12 138 4.43e-19 84.7
Msa0142390 MtrunA17_Chr3g0113031 35.795 176 71 7 120 268 3 163 1.30e-17 82.4
Msa0142390 MtrunA17_Chr7g0251661 31.538 130 83 4 55 181 7 133 1.87e-13 68.2
Msa0142390 MtrunA17_Chr7g0251651 31.081 148 93 5 60 203 21 163 2.86e-13 68.6
Msa0142390 MtrunA17_Chr1g0194791 54.167 48 21 1 59 105 48 95 1.05e-12 64.3
Msa0142390 MtrunA17_Chr3g0130321 29.114 158 93 4 59 203 9 160 1.06e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0142390 AT2G02450.1 91.358 162 14 0 56 217 50 211 2.95e-110 330
Msa0142390 AT2G02450.2 91.358 162 14 0 56 217 50 211 4.28e-110 331
Msa0142390 AT5G39820.1 49.010 202 75 5 42 215 2 203 1.62e-61 203
Msa0142390 AT2G17040.1 57.516 153 60 2 55 205 4 153 2.91e-60 198
Msa0142390 AT1G26870.1 47.059 204 96 3 46 237 5 208 1.09e-59 201
Msa0142390 AT2G43000.1 46.875 192 96 3 49 235 10 200 6.69e-58 192
Msa0142390 AT4G27410.2 58.108 148 59 2 59 204 16 162 1.49e-56 189
Msa0142390 AT3G15500.1 58.784 148 58 2 59 204 16 162 4.76e-56 188
Msa0142390 AT1G52890.1 58.784 148 58 2 59 204 16 162 5.38e-55 186
Msa0142390 AT1G61110.1 51.124 178 72 3 54 217 13 189 2.43e-54 184
Msa0142390 AT1G01720.1 55.696 158 62 3 59 210 9 164 8.79e-54 181
Msa0142390 AT1G77450.1 55.844 154 61 2 59 207 12 163 4.62e-53 178
Msa0142390 AT3G04070.2 40.996 261 122 9 59 305 12 254 4.72e-53 181
Msa0142390 AT5G08790.1 52.258 155 65 2 60 207 10 162 4.94e-53 179
Msa0142390 AT4G27410.3 52.121 165 59 3 59 204 16 179 3.96e-52 178
Msa0142390 AT5G63790.1 53.247 154 63 2 60 206 53 204 4.25e-52 177
Msa0142390 AT5G63790.2 53.247 154 63 2 60 206 63 214 5.62e-52 177
Msa0142390 AT3G15510.1 50.000 164 68 2 61 210 21 184 1.36e-51 178
Msa0142390 AT5G17260.1 52.532 158 69 3 59 211 8 164 2.32e-51 180
Msa0142390 AT3G03200.1 52.532 158 69 3 59 211 8 164 5.24e-51 179
Msa0142390 AT3G04070.1 38.628 277 122 9 59 305 12 270 9.13e-51 176
Msa0142390 AT5G46590.1 54.730 148 62 2 59 201 8 155 8.03e-50 171
Msa0142390 AT1G69490.1 50.641 156 66 3 59 206 11 163 1.14e-49 170
Msa0142390 AT3G17730.1 49.673 153 72 3 59 207 8 159 1.71e-49 169
Msa0142390 AT4G17980.1 51.634 153 67 3 59 204 8 160 2.03e-49 169
Msa0142390 AT4G17980.2 51.634 153 67 3 59 204 8 160 2.56e-49 170
Msa0142390 AT3G15170.1 51.948 154 69 2 59 207 22 175 3.08e-48 167
Msa0142390 AT1G65910.1 50.980 153 70 3 59 207 8 159 3.64e-48 174
Msa0142390 AT5G07680.1 50.000 178 76 5 42 211 3 175 1.46e-47 166
Msa0142390 AT5G46590.2 56.818 132 55 1 59 188 8 139 1.56e-47 165
Msa0142390 AT1G76420.1 51.333 150 71 2 59 206 24 173 5.23e-47 165
Msa0142390 AT5G61430.1 50.980 153 68 3 59 206 18 168 5.62e-47 165
Msa0142390 AT1G32510.1 48.555 173 74 4 59 220 8 176 6.27e-47 163
Msa0142390 AT3G10490.1 48.718 156 74 3 57 207 27 181 7.43e-47 162
Msa0142390 AT1G52880.1 52.866 157 61 3 61 204 21 177 9.66e-47 164
Msa0142390 AT1G34180.3 50.980 153 70 3 59 207 18 169 9.95e-47 167
Msa0142390 AT3G10480.1 48.718 156 74 3 57 207 27 181 1.31e-46 167
Msa0142390 AT1G12260.1 49.669 151 72 2 57 204 7 156 1.36e-46 166
Msa0142390 AT5G07680.2 52.174 161 65 4 59 211 5 161 1.39e-46 163
Msa0142390 AT1G12260.2 49.669 151 72 2 57 204 7 156 1.85e-46 164
Msa0142390 AT3G10480.2 49.045 157 71 4 57 207 27 180 2.30e-46 166
Msa0142390 AT3G04060.1 47.879 165 82 1 44 204 7 171 3.31e-46 163
Msa0142390 AT3G10490.2 48.718 156 74 3 57 207 27 181 6.01e-46 165
Msa0142390 AT1G34180.1 51.316 152 69 3 59 206 18 168 7.73e-46 167
Msa0142390 AT2G24430.2 47.205 161 83 2 46 204 5 165 8.37e-46 161
Msa0142390 AT2G24430.1 47.205 161 83 2 46 204 5 165 8.37e-46 161
Msa0142390 AT3G29035.1 44.898 196 92 6 44 228 11 201 8.71e-46 161
Msa0142390 AT5G39610.1 49.686 159 75 3 50 204 13 170 1.46e-45 160
Msa0142390 AT3G18400.1 50.331 151 67 3 59 205 7 153 2.46e-45 160
Msa0142390 AT1G33280.1 47.403 154 76 3 57 207 8 159 3.01e-45 159
Msa0142390 AT1G62700.1 49.007 151 73 2 57 204 7 156 8.25e-45 160
Msa0142390 AT1G62700.2 49.007 151 73 2 57 204 7 156 8.25e-45 160
Msa0142390 AT1G34190.1 50.000 152 71 3 59 206 18 168 9.11e-45 164
Msa0142390 AT1G79580.3 49.007 151 73 2 57 204 17 166 1.86e-44 159
Msa0142390 AT1G79580.5 49.007 151 73 2 57 204 17 166 1.86e-44 159
Msa0142390 AT1G79580.4 49.007 151 73 2 57 204 17 166 1.86e-44 159
Msa0142390 AT1G79580.2 49.007 151 73 2 57 204 17 166 1.86e-44 159
Msa0142390 AT1G79580.1 49.007 151 73 2 57 204 17 166 1.86e-44 159
Msa0142390 AT1G54330.1 52.027 148 67 3 59 204 8 153 2.27e-44 157
Msa0142390 AT4G35580.1 51.678 149 67 3 60 204 12 159 2.91e-44 162
Msa0142390 AT4G35580.2 51.678 149 67 3 60 204 12 159 3.54e-44 162
Msa0142390 AT4G35580.3 51.678 149 67 3 60 204 12 159 3.74e-44 162
Msa0142390 AT5G24590.2 44.025 159 85 2 60 214 16 174 4.73e-44 160
Msa0142390 AT1G34180.4 46.667 165 71 3 59 207 18 181 5.95e-44 160
Msa0142390 AT5G53950.1 49.689 161 74 3 51 204 9 169 6.55e-44 158
Msa0142390 AT5G18270.2 48.667 150 73 1 59 204 23 172 1.32e-43 156
Msa0142390 AT4G36160.2 32.168 286 171 5 57 335 14 283 1.64e-43 157
Msa0142390 AT4G36160.1 32.168 286 171 5 57 335 10 279 1.72e-43 157
Msa0142390 AT4G36160.3 32.168 286 171 5 57 335 10 279 1.72e-43 157
Msa0142390 AT4G10350.1 45.513 156 79 3 57 207 9 163 2.36e-43 155
Msa0142390 AT1G71930.2 45.638 149 77 2 59 204 11 158 2.82e-43 155
Msa0142390 AT1G71930.1 45.638 149 77 2 59 204 11 158 2.82e-43 155
Msa0142390 AT5G18270.1 48.667 150 73 1 59 204 23 172 2.95e-43 155
Msa0142390 AT1G34180.2 46.951 164 70 3 59 206 18 180 2.96e-43 160
Msa0142390 AT1G33060.2 48.993 149 71 3 60 204 27 174 3.40e-43 161
Msa0142390 AT5G04410.1 46.452 155 76 4 57 206 9 161 3.82e-43 160
Msa0142390 AT1G33060.1 48.993 149 71 3 60 204 27 174 4.03e-43 160
Msa0142390 AT2G18060.3 46.358 151 77 2 57 204 9 158 5.86e-43 155
Msa0142390 AT2G18060.1 46.358 151 77 2 57 204 9 158 5.86e-43 155
Msa0142390 AT3G10500.1 44.805 154 80 3 57 206 9 161 5.97e-43 159
Msa0142390 AT3G49530.2 44.295 149 79 2 60 204 16 164 1.14e-41 152
Msa0142390 AT5G62380.2 43.210 162 88 2 59 217 9 169 1.58e-41 150
Msa0142390 AT5G62380.1 43.210 162 88 2 59 217 9 169 1.58e-41 150
Msa0142390 AT2G46770.1 43.195 169 77 5 57 207 16 183 1.72e-41 151
Msa0142390 AT3G49530.1 43.478 161 83 3 60 212 16 176 2.38e-41 153
Msa0142390 AT3G61910.1 50.000 132 62 2 57 185 11 141 2.88e-41 150
Msa0142390 AT5G66300.1 44.737 152 79 3 57 204 12 162 1.03e-40 147
Msa0142390 AT3G12977.1 46.309 149 76 2 59 204 20 167 1.20e-40 146
Msa0142390 AT3G10480.3 41.270 189 72 4 57 207 27 214 1.41e-40 152
Msa0142390 AT3G12910.1 44.571 175 78 4 49 205 13 186 2.44e-40 146
Msa0142390 AT1G32770.1 40.571 175 85 4 57 213 16 189 2.54e-40 148
Msa0142390 AT1G56010.2 44.079 152 78 3 59 204 21 171 5.13e-40 146
Msa0142390 AT2G33480.2 50.000 144 68 2 59 202 17 156 4.68e-39 142
Msa0142390 AT5G13180.1 51.316 152 67 4 59 206 16 164 9.10e-39 140
Msa0142390 AT2G33480.1 50.685 146 66 3 59 202 17 158 1.35e-38 140
Msa0142390 AT4G28530.1 44.242 165 71 4 59 205 12 173 3.80e-38 142
Msa0142390 AT5G64060.1 34.855 241 135 6 57 293 6 228 6.55e-38 141
Msa0142390 AT5G09330.5 42.208 154 84 3 57 206 6 158 1.59e-37 143
Msa0142390 AT5G09330.2 42.208 154 84 3 57 206 6 158 1.59e-37 143
Msa0142390 AT5G09330.4 42.208 154 84 3 57 206 6 158 1.59e-37 143
Msa0142390 AT5G09330.3 42.208 154 84 3 57 206 6 158 1.59e-37 143
Msa0142390 AT5G09330.1 42.208 154 84 3 57 206 6 158 1.59e-37 143
Msa0142390 AT5G22380.1 45.679 162 78 4 55 206 3 164 1.59e-36 134
Msa0142390 AT2G27300.1 41.830 153 76 4 57 205 14 157 2.16e-36 137
Msa0142390 AT3G44350.2 40.099 202 96 7 60 238 8 207 6.43e-36 133
Msa0142390 AT5G22290.1 44.366 142 77 2 41 181 5 145 1.27e-35 135
Msa0142390 AT1G32870.1 46.875 160 76 4 53 206 6 162 2.35e-35 137
Msa0142390 AT1G32870.2 46.875 160 76 4 53 206 6 162 2.60e-35 137
Msa0142390 AT1G32870.3 46.875 160 76 4 53 206 42 198 6.38e-35 137
Msa0142390 AT3G44290.2 44.800 125 67 2 58 181 15 138 4.34e-34 127
Msa0142390 AT3G44290.1 44.800 125 67 2 58 181 15 138 2.97e-33 128
Msa0142390 AT3G44350.1 47.692 130 59 3 60 182 8 135 2.94e-32 120
Msa0142390 AT5G04395.1 39.583 144 72 2 59 187 30 173 1.15e-31 119
Msa0142390 AT4G01550.1 41.104 163 82 6 58 212 5 161 5.68e-30 121
Msa0142390 AT5G61430.2 50.467 107 46 3 105 206 1 105 1.06e-28 114
Msa0142390 AT3G12977.2 50.000 102 47 2 106 204 14 114 5.01e-27 108
Msa0142390 AT1G56010.1 47.619 105 49 2 105 204 1 104 5.07e-27 109
Msa0142390 AT4G01520.1 40.881 159 78 7 60 208 7 159 8.05e-26 107
Msa0142390 AT4G01540.3 41.509 159 77 7 60 208 7 159 2.30e-25 107
Msa0142390 AT4G01540.4 41.509 159 77 7 60 208 7 159 3.72e-25 106
Msa0142390 AT5G64530.2 44.531 128 56 5 59 184 5 119 4.49e-25 100
Msa0142390 AT4G01540.1 41.509 159 77 7 60 208 7 159 5.24e-25 107
Msa0142390 AT4G01540.2 41.509 159 77 7 60 208 7 159 5.50e-25 106
Msa0142390 AT5G64530.1 44.531 128 56 5 59 184 5 119 5.67e-25 101
Msa0142390 AT4G10350.2 43.119 109 59 2 101 207 9 116 4.60e-24 102
Msa0142390 AT4G28530.2 42.636 129 51 4 59 167 12 137 1.49e-23 100
Msa0142390 AT2G43000.2 41.803 122 65 3 119 235 2 122 2.87e-23 97.4
Msa0142390 AT2G33480.3 50.526 95 44 2 110 202 8 101 1.38e-22 95.9
Msa0142390 AT1G02250.1 41.406 128 66 5 60 181 6 130 9.38e-22 96.7
Msa0142390 AT1G02230.1 36.667 150 80 7 60 201 6 148 1.85e-21 95.9
Msa0142390 AT3G04420.2 40.476 126 70 3 60 181 6 130 3.47e-21 93.6
Msa0142390 AT3G04420.1 40.476 126 70 3 60 181 6 130 3.54e-21 94.7
Msa0142390 AT3G10490.4 50.617 81 36 2 130 207 2 81 2.01e-19 89.7
Msa0142390 AT3G10490.3 50.617 81 36 2 130 207 2 81 2.01e-19 89.7
Msa0142390 AT1G02220.1 36.076 158 82 6 60 209 6 152 3.45e-18 86.7
Msa0142390 AT1G01010.1 36.620 142 74 7 60 187 6 145 3.83e-18 86.7
Msa0142390 AT5G50820.1 35.000 160 74 7 59 203 19 163 1.29e-14 72.8
Msa0142390 AT3G56530.1 30.405 148 97 4 59 202 54 199 1.93e-14 74.3
Msa0142390 AT3G04430.1 39.252 107 62 3 63 167 6 111 3.15e-14 71.6
Msa0142390 AT2G18060.2 44.286 70 38 1 135 204 2 70 1.81e-13 70.9
Msa0142390 AT5G14000.1 31.544 149 96 4 60 206 18 162 7.31e-13 67.8
Msa0142390 AT5G14000.2 32.540 126 80 3 60 183 18 140 1.02e-11 63.2

Find 128 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTAACAACTTCTGGTTAT+TGG 0.211019 1_4:-1281944 Msa0142390:CDS
GATGATGATGGTCGTGTAAT+TGG 0.239615 1_4:+1280889 None:intergenic
TTCTAATTGCTCTGATTATT+CGG 0.257989 1_4:-1280087 Msa0142390:three_prime_UTR
TAAGCAGCAAAATGAAATAT+TGG 0.264868 1_4:-1280830 Msa0142390:CDS
ACTGAAAACTTTCGTTCAAT+TGG 0.296485 1_4:-1281891 Msa0142390:CDS
CCTAATCGTGTAACAACTTC+TGG 0.308486 1_4:-1281951 Msa0142390:CDS
CCAGAAGTTGTTACACGATT+AGG 0.317297 1_4:+1281951 None:intergenic
ATATCGTTCGGTTTCATGTT+GGG 0.335622 1_4:+1281785 None:intergenic
AAGGAGGTTGGAAATTGATT+TGG 0.344511 1_4:+1280322 None:intergenic
TGAAGCTGAGACTGGGAAAA+TGG 0.347823 1_4:+1280519 None:intergenic
GCTGCCGCTGAAGCTGAGAC+TGG 0.355613 1_4:+1280511 None:intergenic
TGCATTATATAGTAGGTAGT+AGG 0.357995 1_4:+1280170 None:intergenic
TATGACCCTTGGGAACTTCC+TGG 0.368869 1_4:-1282386 Msa0142390:intron
GTAGACAAATGATTGGGATT+TGG 0.373594 1_4:+1280367 None:intergenic
CAACTGGTTCGGATGCCTTT+GGG 0.374805 1_4:+1281831 None:intergenic
CCAACTGGTTCGGATGCCTT+TGG 0.377419 1_4:+1281830 None:intergenic
AAGCAGCAAAATGAAATATT+GGG 0.379687 1_4:-1280829 Msa0142390:CDS
TATATATGTTATTGAAATCA+TGG 0.380572 1_4:+1280056 None:intergenic
ATCTTTATCGCTATGACCCT+TGG 0.382909 1_4:-1282397 Msa0142390:CDS
ATGTATTTGCATTATATAGT+AGG 0.386019 1_4:+1280163 None:intergenic
TGATCACATAGTTAACAAAA+TGG 0.392091 1_4:-1280767 Msa0142390:CDS
GTATAAAAGAGGAGAGAAAA+GGG 0.392745 1_4:-1282726 None:intergenic
TGTTAGTTAGTTAGAGAGAG+TGG 0.399180 1_4:-1282697 Msa0142390:five_prime_UTR
AAGCTCATGCTGCTCATGTT+AGG 0.402422 1_4:+1282635 None:intergenic
TCTTCTGAACGGTAATTAGT+AGG 0.410368 1_4:+1280667 None:intergenic
GATCATGTCACAACCACTCT+TGG 0.411521 1_4:-1280718 Msa0142390:CDS
ATGTGATCATCAATTGTCTT+TGG 0.414276 1_4:+1280781 None:intergenic
ATGATGATGGTCGTGTAATT+GGG 0.415001 1_4:+1280890 None:intergenic
GAGGTGTTGTTACTACTGTT+GGG 0.428986 1_4:+1280250 None:intergenic
TGCAGCACTGGTAGCAGTAT+TGG 0.434071 1_4:+1280474 None:intergenic
TTGGGGTGATTATGATCCTC+AGG 0.436862 1_4:+1280268 None:intergenic
CAGCAATGTAGACAAATGAT+TGG 0.439526 1_4:+1280360 None:intergenic
TCTGGTTATTGGAAAGCAAC+AGG 0.440994 1_4:-1281933 Msa0142390:CDS
GATATCGTTCGGTTTCATGT+TGG 0.441960 1_4:+1281784 None:intergenic
AGTTGATAACTGAAATCAAC+TGG 0.445321 1_4:+1280125 None:intergenic
TTGGGAATGGGATTTGTTGT+TGG 0.446359 1_4:-1280811 Msa0142390:CDS
TGATGATGGATGATCTCAAT+AGG 0.454191 1_4:-1280450 Msa0142390:CDS
GCAAAATGAAATATTGGGAA+TGG 0.458597 1_4:-1280824 Msa0142390:CDS
GGAGGTGTTGTTACTACTGT+TGG 0.465590 1_4:+1280249 None:intergenic
CTACCTTCGCCGTAAGGTCG+AGG 0.466198 1_4:-1282456 Msa0142390:CDS
GCATTATATAGTAGGTAGTA+GGG 0.467242 1_4:+1280171 None:intergenic
CAAAATGAAATATTGGGAAT+GGG 0.469377 1_4:-1280823 Msa0142390:CDS
GAGCATGACGTGGTTATGCC+AGG 0.470442 1_4:-1282518 Msa0142390:CDS
TCTCTGACCGACTGTGGGAC+TGG 0.472209 1_4:-1280300 Msa0142390:CDS
TGATTATGATCCTCAGGGAT+TGG 0.472665 1_4:+1280274 None:intergenic
ATACTCATTCATAATCCAAC+TGG 0.474720 1_4:+1281815 None:intergenic
TTATTGAAATCATGGGATAC+AGG 0.479933 1_4:+1280064 None:intergenic
CATTCATAATCCAACTGGTT+CGG 0.480582 1_4:+1281820 None:intergenic
TCTTTATCGCTATGACCCTT+GGG 0.483331 1_4:-1282396 Msa0142390:CDS
TTCAGTTATCAACTTTATGT+AGG 0.484690 1_4:-1280116 Msa0142390:three_prime_UTR
AGGAGGAGTATTGCTGTACT+TGG 0.484755 1_4:+1280690 None:intergenic
CAAGCTCTTCTTCAGTTGGA+TGG 0.486659 1_4:+1282486 None:intergenic
AGTAATTAGTGATTACTTGA+AGG 0.490931 1_4:+1280228 None:intergenic
ATCATGTCACAACCACTCTT+GGG 0.491534 1_4:-1280717 Msa0142390:CDS
GGCGCTGCCGCCACCACAAG+CGG 0.493139 1_4:+1280540 None:intergenic
AGAGTTCTACCTTCGCCGTA+AGG 0.493247 1_4:-1282462 Msa0142390:CDS
GATTTGGATGATTGAGATGT+GGG 0.497103 1_4:+1280383 None:intergenic
TTCCCTCGACCTTACGGCGA+AGG 0.497938 1_4:+1282453 None:intergenic
CTGCCGCTGAAGCTGAGACT+GGG 0.499254 1_4:+1280512 None:intergenic
GGAAATTGATTTGGTAACAT+TGG 0.503521 1_4:+1280331 None:intergenic
TATCGTTCGGTTTCATGTTG+GGG 0.505358 1_4:+1281786 None:intergenic
TTAGTCTCCGCTTGTGGTGG+CGG 0.506486 1_4:-1280547 Msa0142390:CDS
TCTACAAGCTCTTCTTCAGT+TGG 0.506937 1_4:+1282482 None:intergenic
AGTTAGTTAGAGAGAGTGGA+TGG 0.509005 1_4:-1282693 Msa0142390:exon
TGAAACCGAACGATATCAAA+AGG 0.509230 1_4:-1281778 Msa0142390:intron
ATCCATCATCATTGCAGCAC+TGG 0.512112 1_4:+1280462 None:intergenic
TTTGGCAGCAATCGGAGAGA+AGG 0.516877 1_4:-1282024 Msa0142390:CDS
GGAAAGCAACAGGAGCAGAT+AGG 0.517048 1_4:-1281923 Msa0142390:CDS
AGCAATGTAGACAAATGATT+GGG 0.519527 1_4:+1280361 None:intergenic
TGAGCAGCTTTGGCAGCAAT+CGG 0.520334 1_4:-1282032 Msa0142390:intron
GGGTGAGATATCCCTATGTC+GGG 0.523444 1_4:-1280962 Msa0142390:CDS
TACCGTTCAGAAGATGAAGA+AGG 0.528026 1_4:-1280658 Msa0142390:CDS
CCTCCTTCTCTGACCGACTG+TGG 0.530397 1_4:-1280306 Msa0142390:CDS
AGCTACAGCTACAGTAGTAG+TGG 0.543646 1_4:-1282561 Msa0142390:CDS
CCACAGTCGGTCAGAGAAGG+AGG 0.546229 1_4:+1280306 None:intergenic
TGGGAGACAACGAGGGAGGG+AGG 0.546963 1_4:+1280909 None:intergenic
GCATATTGTACTAGTTGCCT+AGG 0.547334 1_4:+1280589 None:intergenic
TGGATGGCAATAGCAGCAGC+AGG 0.551609 1_4:-1282677 Msa0142390:CDS
GTCCCACAGTCGGTCAGAGA+AGG 0.552251 1_4:+1280303 None:intergenic
TACCTTCGCCGTAAGGTCGA+GGG 0.555355 1_4:-1282455 Msa0142390:CDS
ATATATGTTATTGAAATCAT+GGG 0.557506 1_4:+1280057 None:intergenic
GGGAGACAACGAGGGAGGGA+GGG 0.560158 1_4:+1280910 None:intergenic
AGTCGGTCAGAGAAGGAGGT+TGG 0.561135 1_4:+1280310 None:intergenic
TACCAGTGCTGCAATGATGA+TGG 0.562350 1_4:-1280464 Msa0142390:CDS
CTCCTTCTCTGACCGACTGT+GGG 0.564074 1_4:-1280305 Msa0142390:CDS
CTAGTACAATATGCAGCTGC+GGG 0.565924 1_4:-1280580 Msa0142390:CDS
ATCCTTCTTCATCTTCTGAA+CGG 0.566170 1_4:+1280656 None:intergenic
TGGGGTGATTATGATCCTCA+GGG 0.566445 1_4:+1280269 None:intergenic
CACATAGTTAACAAAATGGA+AGG 0.567229 1_4:-1280763 Msa0142390:CDS
GAACGGTAATTAGTAGGAGG+AGG 0.572179 1_4:+1280673 None:intergenic
AGGGTGAGATATCCCTATGT+CGG 0.573960 1_4:-1280963 Msa0142390:CDS
TATATACCAGGAAGTTCCCA+AGG 0.575847 1_4:+1282380 None:intergenic
GGATTTGGATGATTGAGATG+TGG 0.580035 1_4:+1280382 None:intergenic
AATTAGTGATTACTTGAAGG+AGG 0.582479 1_4:+1280231 None:intergenic
ATGAGCTTGAGTCACGAAGA+TGG 0.587554 1_4:-1282620 Msa0142390:CDS
CTGTTAGTCTCCGCTTGTGG+TGG 0.588546 1_4:-1280550 Msa0142390:CDS
TCTCTTGTATACCCGACATA+GGG 0.588580 1_4:+1280951 None:intergenic
CTCTCTTGTATACCCGACAT+AGG 0.590093 1_4:+1280950 None:intergenic
CCAAAGGCATCCGAACCAGT+TGG 0.592737 1_4:-1281830 Msa0142390:CDS
CGAGATAGAAAGTATCGAAA+CGG 0.593685 1_4:-1281981 Msa0142390:CDS
AGCATGACGTGGTTATGCCA+GGG 0.596795 1_4:-1282517 Msa0142390:CDS
TATAAAAGAGGAGAGAAAAG+GGG 0.597062 1_4:-1282725 None:intergenic
TGTCGGGTATACAAGAGAGC+AGG 0.602519 1_4:-1280946 Msa0142390:CDS
AATTGGGAGACAACGAGGGA+GGG 0.605068 1_4:+1280906 None:intergenic
TTTCGATACTTTCTATCTCG+AGG 0.612931 1_4:+1281984 None:intergenic
CGACCATCATCATCATCAAG+AGG 0.614625 1_4:-1280880 Msa0142390:CDS
TCTAACGATAATAGTAACAA+AGG 0.615780 1_4:-1282584 Msa0142390:CDS
TCTCTGTTAGTCTCCGCTTG+TGG 0.618457 1_4:-1280553 Msa0142390:CDS
TTTCCCAGTCTCAGCTTCAG+CGG 0.622682 1_4:-1280515 Msa0142390:CDS
TCTGAACGGTAATTAGTAGG+AGG 0.623921 1_4:+1280670 None:intergenic
ACTAGTACAATATGCAGCTG+CGG 0.627166 1_4:-1280581 Msa0142390:CDS
GTACCTCTTGATGATGATGA+TGG 0.633918 1_4:+1280877 None:intergenic
AGGTGTTGTTACTACTGTTG+GGG 0.635388 1_4:+1280251 None:intergenic
CAGCAATCGGAGAGAAGGAG+TGG 0.646393 1_4:-1282019 Msa0142390:CDS
AGCAGCAGCAACATCAACCT+AGG 0.647554 1_4:-1280606 Msa0142390:CDS
TATTCTGGAAAAGCTCCCAA+AGG 0.650827 1_4:-1281846 Msa0142390:CDS
AAAATGGAAGGAAGCAGTAG+CGG 0.650928 1_4:-1280751 Msa0142390:CDS
ATGGCAATAGCAGCAGCAGG+AGG 0.651608 1_4:-1282674 Msa0142390:CDS
GTTGGATGGAAACGAAACCC+TGG 0.652572 1_4:+1282500 None:intergenic
TAATTGGGAGACAACGAGGG+AGG 0.654012 1_4:+1280905 None:intergenic
CGTGTAATTGGGAGACAACG+AGG 0.654137 1_4:+1280901 None:intergenic
TTGGATTCCAGTCCCACAGT+CGG 0.664258 1_4:+1280293 None:intergenic
ATGGAAGGAAGCAGTAGCGG+CGG 0.686399 1_4:-1280748 Msa0142390:CDS
GTACTTGGAAAGCCCAAGAG+TGG 0.699274 1_4:+1280705 None:intergenic
GTGTAATTGGGAGACAACGA+GGG 0.701719 1_4:+1280902 None:intergenic
ATATACCAGGAAGTTCCCAA+GGG 0.721658 1_4:+1282381 None:intergenic
TGATGATCACGAGCATGACG+TGG 0.732266 1_4:-1282528 Msa0142390:CDS
GGACTGGAATCCAATCCCTG+AGG 0.753349 1_4:-1280284 Msa0142390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAATAAATATATACC+AGG + chr1_4:1280344-1280363 None:intergenic 10.0%
!! ATATATTATTAAATCAAAGA+GGG + chr1_4:1280475-1280494 None:intergenic 10.0%
!! TATATATTATTAAATCAAAG+AGG + chr1_4:1280476-1280495 None:intergenic 10.0%
!!! TTTTTGATAAATAAATATCT+TGG - chr1_4:1280506-1280525 Msa0142390:CDS 10.0%
!! ATATATATATATATGCTATA+TGG + chr1_4:1281301-1281320 None:intergenic 10.0%
!!! GTTGTATATGAATATATTTT+AGG + chr1_4:1281424-1281443 None:intergenic 15.0%
!! TCAAATTCAAAATTATTGTA+AGG + chr1_4:1281717-1281736 None:intergenic 15.0%
!! TTTGAATTTGAATTTGAATT+AGG - chr1_4:1281726-1281745 Msa0142390:intron 15.0%
!! TTGAATTTGAATTTGAATTA+GGG - chr1_4:1281727-1281746 Msa0142390:intron 15.0%
!! ATATATGTTATTGAAATCAT+GGG + chr1_4:1282655-1282674 None:intergenic 15.0%
!! TATATATGTTATTGAAATCA+TGG + chr1_4:1282656-1282675 None:intergenic 15.0%
!! AATATGAAGCAAATAAGTAA+GGG + chr1_4:1280534-1280553 None:intergenic 20.0%
!! AAATATGAAGCAAATAAGTA+AGG + chr1_4:1280535-1280554 None:intergenic 20.0%
!!! AATATAGCTCTTTAAAACTA+GGG + chr1_4:1281126-1281145 None:intergenic 20.0%
!!! TAATATAGCTCTTTAAAACT+AGG + chr1_4:1281127-1281146 None:intergenic 20.0%
!!! TATATTATGCATCTTGATTT+TGG - chr1_4:1281147-1281166 Msa0142390:intron 20.0%
!!! ATATTATGCATCTTGATTTT+GGG - chr1_4:1281148-1281167 Msa0142390:intron 20.0%
!! GTGTGTATACTATATATTTA+TGG + chr1_4:1281190-1281209 None:intergenic 20.0%
!!! GAAAGGAATTAATTAATTTG+TGG + chr1_4:1281567-1281586 None:intergenic 20.0%
!! ATGTATTTGCATTATATAGT+AGG + chr1_4:1282549-1282568 None:intergenic 20.0%
! TCTAACGATAATAGTAACAA+AGG - chr1_4:1280125-1280144 Msa0142390:three_prime_UTR 25.0%
! TTATTAAATCAAAGAGGGAT+GGG + chr1_4:1280470-1280489 None:intergenic 25.0%
! ATTATTAAATCAAAGAGGGA+TGG + chr1_4:1280471-1280490 None:intergenic 25.0%
!!! TATGTGATTGAATTTTGATG+TGG - chr1_4:1280626-1280645 Msa0142390:CDS 25.0%
!! TTTTCCAGAATAGAAAACTA+GGG + chr1_4:1280855-1280874 None:intergenic 25.0%
!! ATATACCTTTTGATATCGTT+CGG + chr1_4:1280939-1280958 None:intergenic 25.0%
!! GCAGTTATATTTGGTAATTA+AGG + chr1_4:1281009-1281028 None:intergenic 25.0%
!!! CATTACTGATTTTTCTTTCA+TGG - chr1_4:1281046-1281065 Msa0142390:intron 25.0%
!!! TTTTAAAACCAACAAAGACA+CGG + chr1_4:1281096-1281115 None:intergenic 25.0%
! ATATATATATGCTATATGGC+TGG + chr1_4:1281297-1281316 None:intergenic 25.0%
!! ATGAAATGTATGCCAAATTT+TGG - chr1_4:1281689-1281708 Msa0142390:intron 25.0%
! TATTGTAAGGATCCAAAATT+TGG + chr1_4:1281704-1281723 None:intergenic 25.0%
! TAAGCAGCAAAATGAAATAT+TGG - chr1_4:1281879-1281898 Msa0142390:CDS 25.0%
! AAGCAGCAAAATGAAATATT+GGG - chr1_4:1281880-1281899 Msa0142390:CDS 25.0%
! CAAAATGAAATATTGGGAAT+GGG - chr1_4:1281886-1281905 Msa0142390:CDS 25.0%
! TGATCACATAGTTAACAAAA+TGG - chr1_4:1281942-1281961 Msa0142390:CDS 25.0%
! AGTAATTAGTGATTACTTGA+AGG + chr1_4:1282484-1282503 None:intergenic 25.0%
! TTCAGTTATCAACTTTATGT+AGG - chr1_4:1282593-1282612 Msa0142390:CDS 25.0%
! TTCTAATTGCTCTGATTATT+CGG - chr1_4:1282622-1282641 Msa0142390:CDS 25.0%
ACTGAAAACTTTCGTTCAAT+TGG - chr1_4:1280818-1280837 Msa0142390:CDS 30.0%
!! AAAACCCTAGTTTTCTATTC+TGG - chr1_4:1280848-1280867 Msa0142390:CDS 30.0%
! CTTTTCCAGAATAGAAAACT+AGG + chr1_4:1280856-1280875 None:intergenic 30.0%
ATACTCATTCATAATCCAAC+TGG + chr1_4:1280897-1280916 None:intergenic 30.0%
GCAAAATGAAATATTGGGAA+TGG - chr1_4:1281885-1281904 Msa0142390:CDS 30.0%
ATGTGATCATCAATTGTCTT+TGG + chr1_4:1281931-1281950 None:intergenic 30.0%
CACATAGTTAACAAAATGGA+AGG - chr1_4:1281946-1281965 Msa0142390:CDS 30.0%
AGCAATGTAGACAAATGATT+GGG + chr1_4:1282351-1282370 None:intergenic 30.0%
!! GGAAATTGATTTGGTAACAT+TGG + chr1_4:1282381-1282400 None:intergenic 30.0%
AATTAGTGATTACTTGAAGG+AGG + chr1_4:1282481-1282500 None:intergenic 30.0%
GCATTATATAGTAGGTAGTA+GGG + chr1_4:1282541-1282560 None:intergenic 30.0%
TGCATTATATAGTAGGTAGT+AGG + chr1_4:1282542-1282561 None:intergenic 30.0%
!! AGTTGATAACTGAAATCAAC+TGG + chr1_4:1282587-1282606 None:intergenic 30.0%
TTATTGAAATCATGGGATAC+AGG + chr1_4:1282648-1282667 None:intergenic 30.0%
TGTTAGTTAGTTAGAGAGAG+TGG - chr1_4:1280012-1280031 Msa0142390:three_prime_UTR 35.0%
!! TCCAGAATTGCTTTAGGAAA+GGG + chr1_4:1280431-1280450 None:intergenic 35.0%
!! TTCCAGAATTGCTTTAGGAA+AGG + chr1_4:1280432-1280451 None:intergenic 35.0%
AGGGATGGGAACAAAAAAAA+GGG + chr1_4:1280456-1280475 None:intergenic 35.0%
! TATATGATGATGAGCAGCTT+TGG - chr1_4:1280667-1280686 Msa0142390:CDS 35.0%
TTTCGATACTTTCTATCTCG+AGG + chr1_4:1280728-1280747 None:intergenic 35.0%
!! CGAGATAGAAAGTATCGAAA+CGG - chr1_4:1280728-1280747 Msa0142390:CDS 35.0%
! GTGTAACAACTTCTGGTTAT+TGG - chr1_4:1280765-1280784 Msa0142390:CDS 35.0%
CATTCATAATCCAACTGGTT+CGG + chr1_4:1280892-1280911 None:intergenic 35.0%
ATATCGTTCGGTTTCATGTT+GGG + chr1_4:1280927-1280946 None:intergenic 35.0%
TGAAACCGAACGATATCAAA+AGG - chr1_4:1280931-1280950 Msa0142390:CDS 35.0%
CCATCAAGAGCAGTTATATT+TGG + chr1_4:1281018-1281037 None:intergenic 35.0%
CCAAATATAACTGCTCTTGA+TGG - chr1_4:1281015-1281034 Msa0142390:intron 35.0%
TATTGAAACCGTGTCTTTGT+TGG - chr1_4:1281085-1281104 Msa0142390:intron 35.0%
! CTAGCTAGCTACTATTGTTT+TGG + chr1_4:1281254-1281273 None:intergenic 35.0%
TATATATGCTATATGGCTGG+TGG + chr1_4:1281294-1281313 None:intergenic 35.0%
GAGGGGTAATTAATCACAAA+CGG + chr1_4:1281455-1281474 None:intergenic 35.0%
AAATGATCACGAGAGATGAA+AGG + chr1_4:1281584-1281603 None:intergenic 35.0%
!! ATGATGATGGTCGTGTAATT+GGG + chr1_4:1281822-1281841 None:intergenic 35.0%
TCTTCTGAACGGTAATTAGT+AGG + chr1_4:1282045-1282064 None:intergenic 35.0%
ATCCTTCTTCATCTTCTGAA+CGG + chr1_4:1282056-1282075 None:intergenic 35.0%
!! TGATGATGGATGATCTCAAT+AGG - chr1_4:1282259-1282278 Msa0142390:intron 35.0%
GATTTGGATGATTGAGATGT+GGG + chr1_4:1282329-1282348 None:intergenic 35.0%
GTAGACAAATGATTGGGATT+TGG + chr1_4:1282345-1282364 None:intergenic 35.0%
CAGCAATGTAGACAAATGAT+TGG + chr1_4:1282352-1282371 None:intergenic 35.0%
AAGGAGGTTGGAAATTGATT+TGG + chr1_4:1282390-1282409 None:intergenic 35.0%
AGTTAGTTAGAGAGAGTGGA+TGG - chr1_4:1280016-1280035 Msa0142390:three_prime_UTR 40.0%
TCTACAAGCTCTTCTTCAGT+TGG + chr1_4:1280230-1280249 None:intergenic 40.0%
ATCTTTATCGCTATGACCCT+TGG - chr1_4:1280312-1280331 Msa0142390:CDS 40.0%
TCTTTATCGCTATGACCCTT+GGG - chr1_4:1280313-1280332 Msa0142390:CDS 40.0%
ATATACCAGGAAGTTCCCAA+GGG + chr1_4:1280331-1280350 None:intergenic 40.0%
TATATACCAGGAAGTTCCCA+AGG + chr1_4:1280332-1280351 None:intergenic 40.0%
!! CCAGAATTGCTTTAGGAAAG+GGG + chr1_4:1280430-1280449 None:intergenic 40.0%
AGGGTTTCCAGAATTGCTTT+AGG + chr1_4:1280437-1280456 None:intergenic 40.0%
GAGGGATGGGAACAAAAAAA+AGG + chr1_4:1280457-1280476 None:intergenic 40.0%
CCAGAAGTTGTTACACGATT+AGG + chr1_4:1280761-1280780 None:intergenic 40.0%
CCTAATCGTGTAACAACTTC+TGG - chr1_4:1280758-1280777 Msa0142390:CDS 40.0%
TCTGGTTATTGGAAAGCAAC+AGG - chr1_4:1280776-1280795 Msa0142390:CDS 40.0%
! TATTCTGGAAAAGCTCCCAA+AGG - chr1_4:1280863-1280882 Msa0142390:CDS 40.0%
TATCGTTCGGTTTCATGTTG+GGG + chr1_4:1280926-1280945 None:intergenic 40.0%
GATATCGTTCGGTTTCATGT+TGG + chr1_4:1280928-1280947 None:intergenic 40.0%
!! GTTTTGGTGTGCTATAGCTT+TGG + chr1_4:1281238-1281257 None:intergenic 40.0%
TTAGAAGCCAAGAATGCAAG+AGG - chr1_4:1281334-1281353 Msa0142390:intron 40.0%
TAGAAGCCAAGAATGCAAGA+GGG - chr1_4:1281335-1281354 Msa0142390:intron 40.0%
!! TCATTTTGATAGTCCAGTGC+AGG - chr1_4:1281598-1281617 Msa0142390:intron 40.0%
TCTCTTGTATACCCGACATA+GGG + chr1_4:1281761-1281780 None:intergenic 40.0%
!! GATGATGATGGTCGTGTAAT+TGG + chr1_4:1281823-1281842 None:intergenic 40.0%
!! GTACCTCTTGATGATGATGA+TGG + chr1_4:1281835-1281854 None:intergenic 40.0%
!! TTGGGAATGGGATTTGTTGT+TGG - chr1_4:1281898-1281917 Msa0142390:CDS 40.0%
AAAATGGAAGGAAGCAGTAG+CGG - chr1_4:1281958-1281977 Msa0142390:CDS 40.0%
ATCATGTCACAACCACTCTT+GGG - chr1_4:1281992-1282011 Msa0142390:CDS 40.0%
TCTGAACGGTAATTAGTAGG+AGG + chr1_4:1282042-1282061 None:intergenic 40.0%
TACCGTTCAGAAGATGAAGA+AGG - chr1_4:1282051-1282070 Msa0142390:intron 40.0%
GCATATTGTACTAGTTGCCT+AGG + chr1_4:1282123-1282142 None:intergenic 40.0%
ACTAGTACAATATGCAGCTG+CGG - chr1_4:1282128-1282147 Msa0142390:intron 40.0%
GGATTTGGATGATTGAGATG+TGG + chr1_4:1282330-1282349 None:intergenic 40.0%
TGATTATGATCCTCAGGGAT+TGG + chr1_4:1282438-1282457 None:intergenic 40.0%
!! AGGTGTTGTTACTACTGTTG+GGG + chr1_4:1282461-1282480 None:intergenic 40.0%
!! GAGGTGTTGTTACTACTGTT+GGG + chr1_4:1282462-1282481 None:intergenic 40.0%
AAGCTCATGCTGCTCATGTT+AGG + chr1_4:1280077-1280096 None:intergenic 45.0%
ATGAGCTTGAGTCACGAAGA+TGG - chr1_4:1280089-1280108 Msa0142390:three_prime_UTR 45.0%
AGCTACAGCTACAGTAGTAG+TGG - chr1_4:1280148-1280167 Msa0142390:three_prime_UTR 45.0%
CAAGCTCTTCTTCAGTTGGA+TGG + chr1_4:1280226-1280245 None:intergenic 45.0%
! AACGTTTTCCCTCGACCTTA+CGG + chr1_4:1280265-1280284 None:intergenic 45.0%
CCCCTTTCCTAAAGCAATTC+TGG - chr1_4:1280427-1280446 Msa0142390:CDS 45.0%
AGGGTGAGATATCCCTATGT+CGG - chr1_4:1281746-1281765 Msa0142390:intron 45.0%
CTCTCTTGTATACCCGACAT+AGG + chr1_4:1281762-1281781 None:intergenic 45.0%
GTGTAATTGGGAGACAACGA+GGG + chr1_4:1281810-1281829 None:intergenic 45.0%
CGACCATCATCATCATCAAG+AGG - chr1_4:1281829-1281848 Msa0142390:CDS 45.0%
GATCATGTCACAACCACTCT+TGG - chr1_4:1281991-1282010 Msa0142390:CDS 45.0%
!! AGGAGGAGTATTGCTGTACT+TGG + chr1_4:1282022-1282041 None:intergenic 45.0%
GAACGGTAATTAGTAGGAGG+AGG + chr1_4:1282039-1282058 None:intergenic 45.0%
CTAGTACAATATGCAGCTGC+GGG - chr1_4:1282129-1282148 Msa0142390:intron 45.0%
TGAAGCTGAGACTGGGAAAA+TGG + chr1_4:1282193-1282212 None:intergenic 45.0%
TACCAGTGCTGCAATGATGA+TGG - chr1_4:1282245-1282264 Msa0142390:intron 45.0%
ATCCATCATCATTGCAGCAC+TGG + chr1_4:1282250-1282269 None:intergenic 45.0%
TGGGGTGATTATGATCCTCA+GGG + chr1_4:1282443-1282462 None:intergenic 45.0%
TTGGGGTGATTATGATCCTC+AGG + chr1_4:1282444-1282463 None:intergenic 45.0%
!! GGAGGTGTTGTTACTACTGT+TGG + chr1_4:1282463-1282482 None:intergenic 45.0%
TGATGATCACGAGCATGACG+TGG - chr1_4:1280181-1280200 Msa0142390:three_prime_UTR 50.0%
AGCATGACGTGGTTATGCCA+GGG - chr1_4:1280192-1280211 Msa0142390:three_prime_UTR 50.0%
GTTGGATGGAAACGAAACCC+TGG + chr1_4:1280212-1280231 None:intergenic 50.0%
AGAGTTCTACCTTCGCCGTA+AGG - chr1_4:1280247-1280266 Msa0142390:CDS 50.0%
TATGACCCTTGGGAACTTCC+TGG - chr1_4:1280323-1280342 Msa0142390:CDS 50.0%
! TGAGCAGCTTTGGCAGCAAT+CGG - chr1_4:1280677-1280696 Msa0142390:CDS 50.0%
TTTGGCAGCAATCGGAGAGA+AGG - chr1_4:1280685-1280704 Msa0142390:CDS 50.0%
GGAAAGCAACAGGAGCAGAT+AGG - chr1_4:1280786-1280805 Msa0142390:CDS 50.0%
!! CAACTGGTTCGGATGCCTTT+GGG + chr1_4:1280881-1280900 None:intergenic 50.0%
AGCTAGCTGCGTGAAACTTG+CGG - chr1_4:1281268-1281287 Msa0142390:intron 50.0%
CTCTCTCCCTCTTGCATTCT+TGG + chr1_4:1281344-1281363 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+GGG + chr1_4:1281472-1281491 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr1_4:1281473-1281492 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_4:1281472-1281491 None:intergenic 50.0%
GTACAGTAGTCTACCTGCAC+TGG + chr1_4:1281614-1281633 None:intergenic 50.0%
GGGTGAGATATCCCTATGTC+GGG - chr1_4:1281747-1281766 Msa0142390:intron 50.0%
TGTCGGGTATACAAGAGAGC+AGG - chr1_4:1281763-1281782 Msa0142390:intron 50.0%
AATTGGGAGACAACGAGGGA+GGG + chr1_4:1281806-1281825 None:intergenic 50.0%
TAATTGGGAGACAACGAGGG+AGG + chr1_4:1281807-1281826 None:intergenic 50.0%
CGTGTAATTGGGAGACAACG+AGG + chr1_4:1281811-1281830 None:intergenic 50.0%
GTACTTGGAAAGCCCAAGAG+TGG + chr1_4:1282007-1282026 None:intergenic 50.0%
AGCAGCAGCAACATCAACCT+AGG - chr1_4:1282103-1282122 Msa0142390:intron 50.0%
! TCTCTGTTAGTCTCCGCTTG+TGG - chr1_4:1282156-1282175 Msa0142390:intron 50.0%
TTTCCCAGTCTCAGCTTCAG+CGG - chr1_4:1282194-1282213 Msa0142390:intron 50.0%
!! TGCAGCACTGGTAGCAGTAT+TGG + chr1_4:1282238-1282257 None:intergenic 50.0%
TTGGATTCCAGTCCCACAGT+CGG + chr1_4:1282419-1282438 None:intergenic 50.0%
TGGATGGCAATAGCAGCAGC+AGG - chr1_4:1280032-1280051 Msa0142390:three_prime_UTR 55.0%
ATGGCAATAGCAGCAGCAGG+AGG - chr1_4:1280035-1280054 Msa0142390:three_prime_UTR 55.0%
GAGCATGACGTGGTTATGCC+AGG - chr1_4:1280191-1280210 Msa0142390:three_prime_UTR 55.0%
TACCTTCGCCGTAAGGTCGA+GGG - chr1_4:1280254-1280273 Msa0142390:CDS 55.0%
CAGCAATCGGAGAGAAGGAG+TGG - chr1_4:1280690-1280709 Msa0142390:CDS 55.0%
!! CCAACTGGTTCGGATGCCTT+TGG + chr1_4:1280882-1280901 None:intergenic 55.0%
!! CCAAAGGCATCCGAACCAGT+TGG - chr1_4:1280879-1280898 Msa0142390:CDS 55.0%
ATGGAAGGAAGCAGTAGCGG+CGG - chr1_4:1281961-1281980 Msa0142390:CDS 55.0%
! CTGTTAGTCTCCGCTTGTGG+TGG - chr1_4:1282159-1282178 Msa0142390:intron 55.0%
TTAGTCTCCGCTTGTGGTGG+CGG - chr1_4:1282162-1282181 Msa0142390:intron 55.0%
AGTCGGTCAGAGAAGGAGGT+TGG + chr1_4:1282402-1282421 None:intergenic 55.0%
CTCCTTCTCTGACCGACTGT+GGG - chr1_4:1282404-1282423 Msa0142390:CDS 55.0%
GGACTGGAATCCAATCCCTG+AGG - chr1_4:1282425-1282444 Msa0142390:CDS 55.0%
CTACCTTCGCCGTAAGGTCG+AGG - chr1_4:1280253-1280272 Msa0142390:CDS 60.0%
TTCCCTCGACCTTACGGCGA+AGG + chr1_4:1280259-1280278 None:intergenic 60.0%
CTGCCGCTGAAGCTGAGACT+GGG + chr1_4:1282200-1282219 None:intergenic 60.0%
CCACAGTCGGTCAGAGAAGG+AGG + chr1_4:1282406-1282425 None:intergenic 60.0%
CCTCCTTCTCTGACCGACTG+TGG - chr1_4:1282403-1282422 Msa0142390:CDS 60.0%
GTCCCACAGTCGGTCAGAGA+AGG + chr1_4:1282409-1282428 None:intergenic 60.0%
TCTCTGACCGACTGTGGGAC+TGG - chr1_4:1282409-1282428 Msa0142390:CDS 60.0%
GGGAGACAACGAGGGAGGGA+GGG + chr1_4:1281802-1281821 None:intergenic 65.0%
TGGGAGACAACGAGGGAGGG+AGG + chr1_4:1281803-1281822 None:intergenic 65.0%
GCTGCCGCTGAAGCTGAGAC+TGG + chr1_4:1282201-1282220 None:intergenic 65.0%
GGCGCTGCCGCCACCACAAG+CGG + chr1_4:1282172-1282191 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 1279998 1282733 1279998 ID=Msa0142390;Name=Msa0142390
chr1_4 mRNA 1279998 1282733 1279998 ID=Msa0142390-mRNA-1;Parent=Msa0142390;Name=Msa0142390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=37|1|1|1|1|1|3|242|440
chr1_4 exon 1279998 1280983 1279998 ID=Msa0142390-mRNA-1:exon:408;Parent=Msa0142390-mRNA-1
chr1_4 exon 1281779 1282047 1281779 ID=Msa0142390-mRNA-1:exon:407;Parent=Msa0142390-mRNA-1
chr1_4 exon 1282387 1282733 1282387 ID=Msa0142390-mRNA-1:exon:406;Parent=Msa0142390-mRNA-1
chr1_4 five_prime_UTR 1282697 1282733 1282697 ID=Msa0142390-mRNA-1:five_prime_utr;Parent=Msa0142390-mRNA-1
chr1_4 CDS 1282387 1282696 1282387 ID=Msa0142390-mRNA-1:cds;Parent=Msa0142390-mRNA-1
chr1_4 CDS 1281779 1282047 1281779 ID=Msa0142390-mRNA-1:cds;Parent=Msa0142390-mRNA-1
chr1_4 CDS 1280240 1280983 1280240 ID=Msa0142390-mRNA-1:cds;Parent=Msa0142390-mRNA-1
chr1_4 three_prime_UTR 1279998 1280239 1279998 ID=Msa0142390-mRNA-1:three_prime_utr;Parent=Msa0142390-mRNA-1
Gene Sequence

>Msa0142390

ATGGCAATAGCAGCAGCAGGAGGAGCAGCAACATCATCACCTAACATGAGCAGCATGAGCTTGAGTCACGAAGATGGAACTGCTACTACTTCTAACGATAATAGTAACAAAGGAGCTACAGCTACAGTAGTAGTGGATGATGATGATGATGATCACGAGCATGACGTGGTTATGCCAGGGTTTCGTTTCCATCCAACTGAAGAAGAGCTTGTAGAGTTCTACCTTCGCCGTAAGGTCGAGGGAAAACGTTTCAACGTTGAGCTTATTACTTTTCTCGATCTTTATCGCTATGACCCTTGGGAACTTCCTGCTTTGGCAGCAATCGGAGAGAAGGAGTGGTACTTTTATGTGCCTCGAGATAGAAAGTATCGAAACGGTGATCGTCCTAATCGTGTAACAACTTCTGGTTATTGGAAAGCAACAGGAGCAGATAGGATGATTCGAACTGAAAACTTTCGTTCAATTGGACTCAAGAAAACCCTAGTTTTCTATTCTGGAAAAGCTCCCAAAGGCATCCGAACCAGTTGGATTATGAATGAGTATAGATTACCCCAACATGAAACCGAACGATATCAAAAGGGTGAGATATCCCTATGTCGGGTATACAAGAGAGCAGGAGTAGAAGATCATCCCTCCCTCCCTCGTTGTCTCCCAATTACACGACCATCATCATCATCAAGAGGTACTACTGCTTCACATTCAGACAAGAATAAGCAGCAAAATGAAATATTGGGAATGGGATTTGTTGTTGGACAATCACCAAAGACAATTGATGATCACATAGTTAACAAAATGGAAGGAAGCAGTAGCGGCGGTAATTCAGATCATGTCACAACCACTCTTGGGCTTTCCAAGTACAGCAATACTCCTCCTCCTACTAATTACCGTTCAGAAGATGAAGAAGGATTGATGATGATGCAGCAGCAGCAGCAGCAGCAGCAGCAACATCAACCTAGGCAACTAGTACAATATGCAGCTGCGGGAAACTCTCTGTTAGTCTCCGCTTGTGGTGGCGGCAGCGCCATTTTCCCAGTCTCAGCTTCAGCGGCAGCAGCAGTGAGCTGTTCCAATACTGCTACCAGTGCTGCAATGATGATGGATGATCTCAATAGGCTTGTAAGTTATCAACAACAGCAATATTGTTACAATGTTCAAAACCCACATCTCAATCATCCAAATCCCAATCATTTGTCTACATTGCTGATGCAACCAATGTTACCAAATCAATTTCCAACCTCCTTCTCTGACCGACTGTGGGACTGGAATCCAATCCCTGAGGATCATAATCACCCCAACAGTAGTAACAACACCTCCTTCAAGTAA
Protein sequence

>Msa0142390

MAIAAAGGAATSSPNMSSMSLSHEDGTATTSNDNSNKGATATVVVDDDDDDHEHDVVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKGEISLCRVYKRAGVEDHPSLPRCLPITRPSSSSRGTTASHSDKNKQQNEILGMGFVVGQSPKTIDDHIVNKMEGSSSGGNSDHVTTTLGLSKYSNTPPPTNYRSEDEEGLMMMQQQQQQQQQHQPRQLVQYAAAGNSLLVSACGGGSAIFPVSASAAAAVSCSNTATSAAMMMDDLNRLVSYQQQQYCYNVQNPHLNHPNPNHLSTLLMQPMLPNQFPTSFSDRLWDWNPIPEDHNHPNSSNNTSFK*