AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0540020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540020 MtrunA17_Chr4g0017211 95.677 694 5 2 1 669 1352 2045 0.0 1352
Msa0540020 MtrunA17_Chr1g0205891 32.613 509 278 13 99 589 376 837 6.82e-72 252
Msa0540020 MtrunA17_Chr8g0384531 33.083 532 290 13 89 579 374 880 9.60e-72 252
Msa0540020 MtrunA17_Chr5g0394201 33.002 503 283 12 99 589 363 823 2.30e-68 242
Msa0540020 MtrunA17_Chr4g0066651 33.006 509 285 15 99 589 989 1459 1.14e-67 241
Msa0540020 MtrunA17_Chr1g0183681 31.955 532 274 11 102 587 394 883 1.98e-67 240
Msa0540020 MtrunA17_Chr4g0066741 30.460 522 296 13 99 605 188 657 4.47e-63 226
Msa0540020 MtrunA17_Chr4g0052341 30.469 512 267 11 102 580 748 1203 4.78e-61 222
Msa0540020 MtrunA17_Chr2g0286291 29.885 522 299 12 99 605 191 660 8.50e-61 220
Msa0540020 MtrunA17_Chr3g0137091 31.690 568 297 16 98 627 288 802 1.00e-60 221
Msa0540020 MtrunA17_Chr7g0232121 31.218 583 284 21 95 614 35 563 1.33e-60 218
Msa0540020 MtrunA17_Chr3g0095091 30.725 524 286 16 99 595 571 1044 3.72e-59 216
Msa0540020 MtrunA17_Chr5g0403921 29.320 515 295 11 99 587 184 655 2.25e-58 210
Msa0540020 MtrunA17_Chr5g0442141 30.326 521 286 14 99 592 617 1087 1.66e-57 211
Msa0540020 MtrunA17_Chr1g0163011 29.123 570 293 19 93 589 189 720 1.13e-54 199
Msa0540020 MtrunA17_Chr5g0393461 27.621 601 364 17 99 648 184 764 8.62e-52 193
Msa0540020 MtrunA17_Chr7g0248031 30.053 569 297 18 98 605 993 1521 1.63e-50 190
Msa0540020 MtrunA17_Chr8g0348721 29.610 564 305 17 98 605 986 1513 1.36e-48 184
Msa0540020 MtrunA17_Chr1g0175191 36.201 279 153 5 95 361 517 782 2.91e-42 165
Msa0540020 MtrunA17_Chr1g0175191 33.796 216 129 4 453 657 1079 1291 6.71e-29 124
Msa0540020 MtrunA17_Chr7g0257101 32.847 274 149 6 99 352 578 836 9.22e-37 148
Msa0540020 MtrunA17_Chr7g0257101 49.635 137 66 1 451 587 1207 1340 6.62e-32 133
Msa0540020 MtrunA17_Chr4g0069451 25.752 532 299 12 90 595 165 626 3.71e-36 144
Msa0540020 MtrunA17_Chr7g0231521 37.559 213 102 7 95 284 35 239 1.61e-31 131
Msa0540020 MtrunA17_Chr7g0231521 35.135 185 94 5 453 614 303 484 3.14e-23 105
Msa0540020 MtrunA17_Chr3g0086111 25.997 577 351 20 90 625 178 719 8.39e-27 117
Msa0540020 MtrunA17_Chr4g0040301 43.796 137 74 1 454 590 398 531 9.62e-26 112
Msa0540020 MtrunA17_Chr4g0040301 30.328 244 148 6 127 353 18 256 5.07e-25 110
Msa0540020 MtrunA17_Chr1g0212331 35.443 158 97 2 451 606 884 1038 1.87e-23 106
Msa0540020 MtrunA17_Chr1g0212331 29.891 184 104 4 212 390 522 685 1.38e-12 71.2
Msa0540020 MtrunA17_Chr7g0255821 28.622 283 165 4 120 382 251 516 1.11e-22 103
Msa0540020 MtrunA17_Chr7g0255821 35.385 130 75 3 454 579 668 792 9.85e-17 84.3
Msa0540020 MtrunA17_Chr1g0190381 32.579 221 121 7 454 649 206 423 2.74e-22 101
Msa0540020 MtrunA17_Chr1g0168031 34.815 135 85 1 445 579 996 1127 1.50e-21 100
Msa0540020 MtrunA17_Chr1g0168031 27.570 214 122 4 89 269 504 717 8.48e-15 78.6
Msa0540020 MtrunA17_Chr7g0233001 26.154 390 234 11 221 593 129 481 2.42e-21 98.2
Msa0540020 MtrunA17_Chr2g0320751 27.778 342 166 10 87 360 364 692 9.37e-21 97.4
Msa0540020 MtrunA17_Chr2g0320751 30.114 176 115 4 432 606 847 1015 1.37e-20 97.1
Msa0540020 MtrunA17_Chr2g0281601 29.121 182 123 3 427 606 1124 1301 1.37e-20 97.1
Msa0540020 MtrunA17_Chr2g0281601 34.194 155 84 5 212 360 778 920 2.02e-12 70.9
Msa0540020 MtrunA17_Chr4g0024921 31.013 158 106 1 451 608 781 935 7.34e-20 94.7
Msa0540020 MtrunA17_Chr4g0024921 31.667 180 96 7 56 208 190 369 6.35e-12 68.9
Msa0540020 MtrunA17_Chr7g0233021 25.661 378 247 8 221 592 842 1191 5.62e-19 92.0
Msa0540020 MtrunA17_Chr7g0232971 25.594 379 249 8 221 592 905 1257 6.88e-19 91.7
Msa0540020 MtrunA17_Chr1g0190391 31.606 193 98 6 121 285 614 800 1.96e-17 86.7
Msa0540020 MtrunA17_Chr7g0224051 23.858 394 249 12 221 590 709 1075 4.08e-15 79.7
Msa0540020 MtrunA17_Chr5g0428401 29.341 167 106 4 454 611 1495 1658 7.10e-12 69.3
Msa0540020 MtrunA17_Chr4g0047081 31.507 146 95 3 452 593 1052 1196 3.18e-11 67.0
Msa0540020 MtrunA17_Chr7g0232991 29.586 169 111 3 454 614 479 647 5.08e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540020 AT3G54280.1 77.618 697 124 5 1 669 1353 2045 0.0 1090
Msa0540020 AT3G54280.2 77.618 697 124 5 1 669 1384 2076 0.0 1088
Msa0540020 AT3G06010.1 33.006 509 276 16 99 589 403 864 4.90e-70 247
Msa0540020 AT5G19310.2 32.359 513 273 14 99 589 122 582 8.66e-70 243
Msa0540020 AT5G63950.1 31.150 565 322 14 89 614 367 903 1.49e-68 243
Msa0540020 AT5G19310.1 32.359 513 273 14 99 589 386 846 2.32e-68 242
Msa0540020 AT5G63950.2 31.387 548 326 12 89 614 367 886 1.12e-66 238
Msa0540020 AT2G25170.3 32.937 589 280 18 95 632 295 819 2.65e-66 238
Msa0540020 AT2G25170.1 32.937 589 280 18 95 632 269 793 2.69e-66 238
Msa0540020 AT2G25170.4 32.937 589 280 18 95 632 269 793 2.69e-66 238
Msa0540020 AT2G25170.2 32.937 589 280 18 95 632 286 810 3.56e-66 237
Msa0540020 AT2G18760.4 31.767 532 273 10 102 587 388 875 2.41e-65 234
Msa0540020 AT2G18760.1 31.767 532 273 10 102 587 388 875 2.41e-65 234
Msa0540020 AT2G18760.2 31.767 532 273 10 102 587 388 875 2.41e-65 234
Msa0540020 AT2G18760.7 31.767 532 273 10 102 587 388 875 2.41e-65 234
Msa0540020 AT2G18760.5 31.767 532 273 10 102 587 388 875 2.41e-65 234
Msa0540020 AT2G18760.6 31.767 532 273 10 102 587 388 875 2.41e-65 234
Msa0540020 AT2G18760.3 31.767 532 273 10 102 587 447 934 3.00e-65 234
Msa0540020 AT2G28290.5 32.613 509 287 15 99 589 755 1225 1.56e-64 233
Msa0540020 AT2G28290.3 32.613 509 287 15 99 589 754 1224 1.61e-64 233
Msa0540020 AT2G28290.4 32.613 509 287 15 99 589 754 1224 1.61e-64 233
Msa0540020 AT2G28290.1 32.613 509 287 15 99 589 754 1224 1.62e-64 233
Msa0540020 AT2G28290.6 32.613 509 287 15 99 589 755 1225 1.69e-64 233
Msa0540020 AT2G28290.2 32.613 509 287 15 99 589 754 1224 1.79e-64 233
Msa0540020 AT5G66750.1 31.115 511 291 12 99 587 202 673 7.01e-64 226
Msa0540020 AT3G06400.3 29.174 545 314 14 99 628 189 676 1.33e-60 220
Msa0540020 AT3G06400.2 29.174 545 314 14 99 628 189 676 1.38e-60 219
Msa0540020 AT3G06400.1 29.174 545 314 14 99 628 189 676 1.46e-60 219
Msa0540020 AT5G18620.2 29.412 527 295 12 99 605 194 663 4.58e-60 218
Msa0540020 AT5G18620.1 29.412 527 295 12 99 605 194 663 4.84e-60 218
Msa0540020 AT2G44980.3 31.376 545 274 18 92 587 42 535 2.43e-59 214
Msa0540020 AT2G44980.1 32.270 533 267 19 92 587 42 517 5.15e-59 213
Msa0540020 AT5G44800.1 30.192 520 274 11 102 588 692 1155 9.15e-58 213
Msa0540020 AT2G13370.1 31.740 523 276 17 98 592 624 1093 9.56e-58 212
Msa0540020 AT2G13370.2 31.740 523 276 17 98 592 624 1093 9.56e-58 212
Msa0540020 AT2G13370.3 31.740 523 276 17 98 592 624 1093 9.56e-58 212
Msa0540020 AT2G44980.2 31.319 546 274 19 92 587 42 536 1.23e-57 210
Msa0540020 AT4G31900.2 29.815 540 284 18 76 587 160 632 2.28e-56 207
Msa0540020 AT4G31900.3 29.259 540 287 17 76 587 201 673 2.39e-56 207
Msa0540020 AT4G31900.1 29.259 540 287 17 76 587 201 673 2.88e-56 207
Msa0540020 AT2G02090.1 30.496 564 293 21 93 589 207 738 2.91e-54 199
Msa0540020 AT3G19210.3 29.965 574 333 18 99 625 180 731 1.45e-53 197
Msa0540020 AT3G19210.1 29.965 574 333 18 99 625 180 731 6.62e-53 196
Msa0540020 AT3G19210.2 29.340 576 332 19 99 625 180 729 4.07e-50 188
Msa0540020 AT2G46020.5 29.918 488 277 14 98 559 980 1428 8.11e-50 189
Msa0540020 AT2G46020.1 29.918 488 277 14 98 559 980 1428 8.11e-50 189
Msa0540020 AT2G46020.6 29.918 488 277 14 98 559 980 1428 8.11e-50 189
Msa0540020 AT2G46020.2 29.857 489 277 15 98 559 980 1429 1.43e-49 188
Msa0540020 AT2G46020.3 29.857 489 277 15 98 559 980 1429 1.43e-49 188
Msa0540020 AT2G46020.4 29.857 489 277 15 98 559 980 1429 1.43e-49 188
Msa0540020 AT3G12810.1 35.842 279 154 5 95 361 532 797 7.93e-42 164
Msa0540020 AT3G12810.1 42.029 138 77 1 450 587 1089 1223 2.41e-28 122
Msa0540020 AT3G12810.2 35.842 279 154 5 95 361 528 793 8.91e-42 164
Msa0540020 AT3G12810.2 42.029 138 77 1 450 587 1085 1219 2.50e-28 122
Msa0540020 AT1G02670.6 27.045 599 326 19 94 607 91 663 4.32e-39 154
Msa0540020 AT1G02670.3 27.045 599 326 19 94 607 118 690 6.73e-39 153
Msa0540020 AT3G57300.3 33.453 278 150 6 95 352 582 844 1.22e-37 151
Msa0540020 AT3G57300.1 33.453 278 150 6 95 352 582 844 1.74e-37 150
Msa0540020 AT3G57300.1 49.635 137 66 1 451 587 1221 1354 7.33e-31 130
Msa0540020 AT3G57300.4 33.453 278 150 6 95 352 582 844 1.74e-37 150
Msa0540020 AT3G57300.4 49.635 137 66 1 451 587 1221 1354 7.33e-31 130
Msa0540020 AT1G48310.1 25.405 555 320 14 90 621 163 646 2.09e-35 142
Msa0540020 AT1G48310.2 25.405 555 320 14 90 621 168 651 2.63e-35 142
Msa0540020 AT1G48310.3 26.654 514 287 13 90 580 163 609 3.08e-35 142
Msa0540020 AT3G57300.2 30.547 311 148 7 95 352 582 877 2.99e-34 140
Msa0540020 AT3G57300.2 49.635 137 66 1 451 587 1254 1387 7.53e-31 130
Msa0540020 AT1G03750.1 30.909 275 170 5 95 353 135 405 8.47e-32 132
Msa0540020 AT1G03750.1 43.284 134 73 1 454 587 546 676 7.02e-25 110
Msa0540020 AT1G02670.5 26.221 553 294 19 94 560 91 615 1.57e-30 127
Msa0540020 AT1G02670.2 26.221 553 294 19 94 560 118 642 2.45e-30 127
Msa0540020 AT5G07810.1 27.215 474 294 13 121 570 223 669 2.92e-29 125
Msa0540020 AT1G11100.5 29.283 321 152 11 95 354 395 701 1.04e-23 107
Msa0540020 AT1G11100.5 32.000 150 98 2 448 596 924 1070 2.12e-19 93.6
Msa0540020 AT1G11100.1 29.283 321 152 11 95 354 538 844 1.13e-23 107
Msa0540020 AT1G11100.1 32.000 150 98 2 448 596 1067 1213 2.10e-19 94.0
Msa0540020 AT1G08600.1 29.098 244 160 4 118 354 748 985 8.88e-23 104
Msa0540020 AT1G08600.1 32.984 191 115 4 454 632 1112 1301 4.48e-21 99.4
Msa0540020 AT5G22750.1 32.620 187 106 5 421 606 861 1028 4.79e-22 102
Msa0540020 AT5G22750.1 31.858 226 120 6 157 360 492 705 2.56e-20 96.7
Msa0540020 AT1G50410.2 32.278 158 102 2 451 606 825 979 3.50e-21 99.4
Msa0540020 AT1G50410.1 32.278 158 102 2 451 606 825 979 3.50e-21 99.4
Msa0540020 AT1G50410.3 32.278 158 102 2 451 606 825 979 3.50e-21 99.4
Msa0540020 AT1G08600.4 32.984 191 115 4 454 632 1133 1322 4.62e-21 99.4
Msa0540020 AT1G08600.4 29.811 265 152 6 118 354 748 1006 4.78e-21 99.4
Msa0540020 AT1G08600.3 32.984 191 115 4 454 632 1133 1322 4.62e-21 99.4
Msa0540020 AT1G08600.3 29.811 265 152 6 118 354 748 1006 4.78e-21 99.4
Msa0540020 AT1G08600.2 32.984 191 115 4 454 632 1133 1322 4.62e-21 99.4
Msa0540020 AT1G08600.2 29.811 265 152 6 118 354 748 1006 4.78e-21 99.4
Msa0540020 AT1G61140.3 28.505 214 137 4 396 596 897 1107 6.12e-21 98.6
Msa0540020 AT1G61140.3 34.839 155 84 4 212 361 624 766 2.26e-13 74.3
Msa0540020 AT3G20010.3 31.646 158 103 2 451 606 625 779 6.90e-21 98.2
Msa0540020 AT3G20010.3 30.189 159 94 3 208 361 267 413 1.00e-13 75.1
Msa0540020 AT1G61140.1 28.505 214 137 4 396 596 1055 1265 7.31e-21 98.6
Msa0540020 AT1G61140.1 34.839 155 84 4 212 361 782 924 3.15e-13 73.9
Msa0540020 AT3G20010.2 31.646 158 103 2 451 606 600 754 7.34e-21 98.2
Msa0540020 AT3G20010.2 30.189 159 94 3 208 361 242 388 9.92e-14 75.1
Msa0540020 AT3G20010.1 31.646 158 103 2 451 606 891 1045 1.06e-20 97.8
Msa0540020 AT3G20010.1 30.189 159 94 3 208 361 533 679 1.37e-13 75.1
Msa0540020 AT3G20010.5 31.646 158 103 2 451 606 891 1045 1.06e-20 97.8
Msa0540020 AT3G20010.5 30.189 159 94 3 208 361 533 679 1.37e-13 75.1
Msa0540020 AT3G20010.7 31.646 158 103 2 451 606 891 1045 1.06e-20 97.8
Msa0540020 AT3G20010.7 30.189 159 94 3 208 361 533 679 1.37e-13 75.1
Msa0540020 AT1G02670.1 34.839 155 97 2 454 607 527 678 1.09e-20 97.4
Msa0540020 AT1G02670.1 31.944 216 110 9 94 285 129 331 7.76e-20 94.7
Msa0540020 AT1G02670.7 34.839 155 97 2 454 607 516 667 1.13e-20 97.1
Msa0540020 AT1G02670.7 31.944 216 110 9 94 285 118 320 8.43e-20 94.4
Msa0540020 AT1G02670.4 29.431 299 164 11 94 352 118 409 3.85e-20 95.1
Msa0540020 AT5G05130.1 25.430 291 150 6 120 356 281 558 7.16e-20 95.1
Msa0540020 AT5G05130.1 37.594 133 78 3 454 584 727 856 2.97e-18 89.7
Msa0540020 AT5G43530.1 34.459 148 92 3 449 595 1125 1268 1.04e-19 94.7
Msa0540020 AT5G43530.1 25.893 336 177 11 64 351 633 944 1.26e-16 84.7
Msa0540020 AT1G11100.4 32.000 150 98 2 448 596 1111 1257 2.23e-19 93.6
Msa0540020 AT1G11100.4 25.753 365 152 11 95 354 538 888 2.42e-18 90.5
Msa0540020 AT1G11100.3 32.000 150 98 2 448 596 968 1114 2.28e-19 93.6
Msa0540020 AT1G11100.3 25.753 365 152 11 95 354 395 745 2.38e-18 90.5
Msa0540020 AT1G11100.2 32.000 150 98 2 448 596 1110 1256 2.28e-19 93.6
Msa0540020 AT1G11100.2 25.753 365 152 11 95 354 537 887 2.26e-18 90.5
Msa0540020 AT1G05120.1 31.013 158 106 1 451 608 679 833 3.21e-19 92.8
Msa0540020 AT1G05120.2 31.013 158 106 1 451 608 722 876 3.77e-19 92.8
Msa0540020 AT1G05490.1 25.620 363 220 11 221 569 1009 1335 8.02e-19 92.0
Msa0540020 AT1G48310.4 28.369 282 158 7 90 349 163 422 3.82e-17 85.5
Msa0540020 AT3G42670.2 23.691 401 241 11 221 590 847 1213 1.68e-15 81.3
Msa0540020 AT3G42670.3 23.691 401 241 11 221 590 847 1213 1.68e-15 81.3
Msa0540020 AT3G42670.1 23.691 401 241 11 221 590 847 1213 1.68e-15 81.3
Msa0540020 AT3G42670.4 23.691 401 241 11 221 590 849 1215 1.71e-15 81.3
Msa0540020 AT3G20010.4 30.189 159 94 3 208 361 533 679 1.61e-13 74.7
Msa0540020 AT3G20010.6 30.189 159 94 3 208 361 533 679 1.61e-13 74.7
Msa0540020 AT3G20010.8 30.189 159 94 3 208 361 533 679 1.61e-13 74.7
Msa0540020 AT1G61140.2 34.839 155 84 4 212 361 789 931 3.09e-13 73.9
Msa0540020 AT2G40770.2 31.765 170 100 4 452 608 1449 1615 8.20e-13 72.8
Msa0540020 AT2G40770.1 31.765 170 100 4 452 608 1449 1615 8.20e-13 72.8
Msa0540020 AT2G40770.3 31.765 170 100 4 452 608 1449 1615 8.20e-13 72.8
Msa0540020 AT3G16600.1 29.630 135 87 4 486 613 483 616 2.50e-12 70.5

Find 165 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCACTGCCTAATAATTT+AGG 0.070680 4_1:+21562820 None:intergenic
CCGGAAAGATATTGATTATT+TGG 0.102354 4_1:-21566202 Msa0540020:CDS
CTGAAACGTTTCAAACTTCA+TGG 0.224274 4_1:-21566507 Msa0540020:CDS
GTTGATTAGCTTTCTTGTTC+AGG 0.239414 4_1:-21567308 Msa0540020:CDS
CCAAATAATCAATATCTTTC+CGG 0.249392 4_1:+21566202 None:intergenic
TTCCACTGCCTAATAATTTA+GGG 0.262311 4_1:+21562821 None:intergenic
AGCTTTCTTGTTCAGGGGCT+TGG 0.271180 4_1:-21567301 Msa0540020:CDS
TCATGAAGAGCAACTAGTTT+TGG 0.292076 4_1:+21564091 None:intergenic
TTGGAGGATTGGAGGATCTA+TGG 0.293572 4_1:-21562780 Msa0540020:CDS
CACTGATTTACTTGCCTGTA+TGG 0.302358 4_1:+21562529 None:intergenic
GATGGAGACCCTAAATTATT+AGG 0.313276 4_1:-21562829 Msa0540020:CDS
CGGAAAGATATTGATTATTT+GGG 0.315503 4_1:-21566201 Msa0540020:CDS
GTTCCACAACCAATTGGATT+AGG 0.316184 4_1:-21567142 Msa0540020:CDS
GAATCCTATGCGTGATCTTC+AGG 0.320214 4_1:-21563464 Msa0540020:intron
TTCCACAACCAATTGGATTA+GGG 0.326173 4_1:-21567141 Msa0540020:CDS
TACAATTTCAAATCGCTTCT+CGG 0.327858 4_1:+21563714 None:intergenic
TGTTTGTGTGTAGGCGTTCT+TGG 0.329942 4_1:-21563895 Msa0540020:intron
AATGTCAAAATTTGTAGTCT+TGG 0.340836 4_1:+21562649 None:intergenic
CTATTTGTAGTGGGCGGGCT+TGG 0.349857 4_1:-21563535 Msa0540020:intron
ATCAACAGGAAGGCATAAAT+TGG 0.352793 4_1:-21566539 Msa0540020:CDS
CTCTGACTCTGAAATGAATC+TGG 0.365489 4_1:+21562690 None:intergenic
TACCAGTTCCAAAGCACATA+TGG 0.366815 4_1:-21564743 Msa0540020:intron
AATCACTCATGCATCGTAGA+AGG 0.367516 4_1:+21567239 None:intergenic
AGAATAACATAATGGACTTA+TGG 0.367668 4_1:-21565963 Msa0540020:CDS
CTCTTGGAACTGTTTCCTGC+TGG 0.368751 4_1:-21564154 Msa0540020:CDS
TTGATTAGCTTTCTTGTTCA+GGG 0.374771 4_1:-21567307 Msa0540020:CDS
AGTCATCCGTTGCTTGTACT+TGG 0.376776 4_1:-21564208 Msa0540020:CDS
ATGTCAAAATTTGTAGTCTT+GGG 0.379480 4_1:+21562650 None:intergenic
ATTCTCGAAGAGTGTGGAAT+TGG 0.382685 4_1:-21564067 Msa0540020:CDS
CTTGTGTCCTGTTTCCATAC+AGG 0.384851 4_1:-21562543 Msa0540020:three_prime_UTR
AACGACAAAATATGAGGAAA+AGG 0.398927 4_1:+21562597 None:intergenic
AGGTCATGCCTTTCCTCCTT+CGG 0.405931 4_1:-21564556 Msa0540020:CDS
TTACTTGCCTGTATGGAAAC+AGG 0.410215 4_1:+21562536 None:intergenic
CTTGATATTTGCTCAACATA+AGG 0.414769 4_1:-21563993 Msa0540020:intron
AGGATGGTAGAGAGTGAATC+TGG 0.421965 4_1:+21564175 None:intergenic
GGAATTGGAGTTGATGCTTC+AGG 0.422261 4_1:-21564052 Msa0540020:CDS
TATCTAGTCTTCAGTATGTT+GGG 0.428031 4_1:-21566299 Msa0540020:intron
CGTGGTGTTCCACAACCAAT+TGG 0.431974 4_1:-21567148 Msa0540020:CDS
TGATCATTCTAGGTATCAAC+AGG 0.433358 4_1:-21566553 Msa0540020:intron
CACAAGCAAATGCCACCATT+GGG 0.436129 4_1:+21562560 None:intergenic
TCTCTTGCAGAATAACATAA+TGG 0.437606 4_1:-21565971 Msa0540020:intron
CACTCAATATCAAGCGGTGT+TGG 0.440234 4_1:+21566085 None:intergenic
TTTGTATAGGGGTCTTCTGT+TGG 0.443076 4_1:-21562874 Msa0540020:intron
CATCCGTTGCTTGTACTTGG+TGG 0.443427 4_1:-21564205 Msa0540020:CDS
CAGTCATCACCTACCTGTAT+TGG 0.447037 4_1:+21566057 None:intergenic
TGTTTCAGACTCACATGAAA+AGG 0.450927 4_1:-21563854 Msa0540020:intron
AAAATATGAGGAAAAGGGTA+TGG 0.454880 4_1:+21562603 None:intergenic
GAAAGCAATACTTGGAGGAT+TGG 0.456646 4_1:-21562791 Msa0540020:CDS
TCAGGGGCTTGGTGTAGAGT+TGG 0.457942 4_1:-21567290 Msa0540020:CDS
ACTCAATATCAAGCGGTGTT+GGG 0.463042 4_1:+21566086 None:intergenic
TCAGTATGTTGGGTCTGCTC+AGG 0.464588 4_1:-21566289 Msa0540020:CDS
TCTGATAATGCGTGGTACTC+TGG 0.465125 4_1:-21563202 Msa0540020:CDS
ACACCTTCCCCTAATCCAAT+TGG 0.466949 4_1:+21567133 None:intergenic
ACTCCTCTGTATACTGTGAT+TGG 0.467149 4_1:+21562755 None:intergenic
GGTCCCATACGCTCCTCTGC+TGG 0.469388 4_1:-21567269 Msa0540020:CDS
TTGTATAGGGGTCTTCTGTT+GGG 0.470153 4_1:-21562873 Msa0540020:intron
ATTTGCCCGTCAACACTAGT+TGG 0.470937 4_1:-21566366 Msa0540020:CDS
TCCCCTAATCCAATTGGTTG+TGG 0.471750 4_1:+21567139 None:intergenic
ATGGATAGAGCGCACAGGTT+AGG 0.471760 4_1:-21563252 Msa0540020:CDS
CTGTTGGCATTGGGCAGCAT+AGG 0.471829 4_1:-21564018 Msa0540020:CDS
GCATCCTTAGCAGAGCACTT+TGG 0.476226 4_1:+21564695 None:intergenic
TTCACTCTCTACCATCCTCT+TGG 0.478637 4_1:-21564170 Msa0540020:CDS
TTATGTGATGACATGGGGCT+TGG 0.485059 4_1:-21566480 Msa0540020:CDS
CTGAGAATGCTGTTGGCATT+GGG 0.490296 4_1:-21564027 Msa0540020:CDS
CAAGGGTATCTGCAGATGTC+AGG 0.491138 4_1:+21563506 None:intergenic
CTATCTGTTCCGAGAAATCC+AGG 0.493559 4_1:+21565919 None:intergenic
GTCTTATTGCTTACGACTCA+TGG 0.496062 4_1:-21563661 Msa0540020:intron
ATATCTAGTCTTCAGTATGT+TGG 0.497159 4_1:-21566300 Msa0540020:intron
TAACATCATATGATGTTGTC+CGG 0.500421 4_1:-21566221 Msa0540020:CDS
AATAGTAACGACAAAATATG+AGG 0.501342 4_1:+21562591 None:intergenic
GTTCTCTATTTGTAGTGGGC+GGG 0.504873 4_1:-21563540 Msa0540020:intron
GTACAAGAGCAGCAAAGCTA+TGG 0.505822 4_1:+21567188 None:intergenic
ACTGAGAATGCTGTTGGCAT+TGG 0.508395 4_1:-21564028 Msa0540020:CDS
AGCAAGAGTAACTTTAGACT+TGG 0.514316 4_1:+21566125 None:intergenic
ACACAAGCAAATGCCACCAT+TGG 0.514861 4_1:+21562559 None:intergenic
ATTGAGTGGGACACCAATAC+AGG 0.515838 4_1:-21566070 Msa0540020:intron
TCTGCTAAGGATGCTGAAGC+TGG 0.516237 4_1:-21564686 Msa0540020:CDS
GGATCTCTTGAAGCTAAAAG+TGG 0.516945 4_1:+21564716 None:intergenic
GACCCTAAATTATTAGGCAG+TGG 0.519771 4_1:-21562823 Msa0540020:CDS
GTTCATGCTCGGCAAGGAGC+AGG 0.521658 4_1:-21567334 Msa0540020:five_prime_UTR
TCTCTATATATTACCACGAA+GGG 0.522776 4_1:+21562453 None:intergenic
ACCACCAGCAGAGGAGCGTA+TGG 0.523822 4_1:+21567265 None:intergenic
ATCCGTTGCTTGTACTTGGT+GGG 0.525407 4_1:-21564204 Msa0540020:CDS
GTTGAGCGTCGAACTCAAAT+CGG 0.526507 4_1:-21566417 Msa0540020:CDS
TGTGGAACACCACGTGCTAA+AGG 0.528805 4_1:+21567157 None:intergenic
GTCACATATTTGCGGCTGGA+TGG 0.531480 4_1:-21563748 Msa0540020:CDS
CAGTGTCCAACTAGTGTTGA+CGG 0.533205 4_1:+21566360 None:intergenic
TGTTGGCATTGGGCAGCATA+GGG 0.534686 4_1:-21564017 Msa0540020:CDS
TAAATTATTAGGCAGTGGAA+AGG 0.536947 4_1:-21562818 Msa0540020:CDS
AAGGGAATGAAAGCAATACT+TGG 0.540464 4_1:-21562799 Msa0540020:CDS
ACGACAAAATATGAGGAAAA+GGG 0.540884 4_1:+21562598 None:intergenic
AAATTATTAGGCAGTGGAAA+GGG 0.541885 4_1:-21562817 Msa0540020:CDS
GACGGGCAAATAATTAAAGA+TGG 0.542787 4_1:+21566378 None:intergenic
TGGAGGATTGGAGGATCTAT+GGG 0.544268 4_1:-21562779 Msa0540020:CDS
CGTAAGCAATAAGACATCAA+TGG 0.544455 4_1:+21563669 None:intergenic
AATGAGTCAGCTGCAGCAGA+AGG 0.545930 4_1:-21564389 Msa0540020:CDS
ACTTCAAGCATCAGCAATTG+TGG 0.546560 4_1:-21566451 Msa0540020:CDS
CAGTGTCACATATTTGCGGC+TGG 0.546594 4_1:-21563752 Msa0540020:CDS
GAGAGTGAGGTTTGAGTGAC+CGG 0.548980 4_1:-21562482 Msa0540020:three_prime_UTR
CCACGTGCTAAAGGAAGTAA+TGG 0.549547 4_1:+21567166 None:intergenic
ATCACTCATGCATCGTAGAA+GGG 0.551663 4_1:+21567240 None:intergenic
AGCAATACTTGGAGGATTGG+AGG 0.552748 4_1:-21562788 Msa0540020:CDS
AGCTAGTGAAGGCTTGAGGA+TGG 0.553815 4_1:-21562426 Msa0540020:three_prime_UTR
AGATCCAAAGTGCTCTGCTA+AGG 0.554048 4_1:-21564699 Msa0540020:CDS
AGTTCAGAGGACAACAGTGA+TGG 0.555753 4_1:-21562847 Msa0540020:CDS
ATTATTTGGGACAGCTGCCG+TGG 0.561654 4_1:-21566188 Msa0540020:CDS
ATTTCTCGGAACAGATAGAC+AGG 0.564468 4_1:-21565914 Msa0540020:intron
CGTCAACACTAGTTGGACAC+TGG 0.565781 4_1:-21566359 Msa0540020:CDS
CCATTACTTCCTTTAGCACG+TGG 0.565886 4_1:-21567166 Msa0540020:CDS
CATCCTTCGTCCTCCGAAGG+AGG 0.566798 4_1:+21564543 None:intergenic
TGAAGCTGGAGCACTTGCTA+TGG 0.567304 4_1:-21564672 Msa0540020:CDS
TGACCGGTGGAAGCCCTTCG+TGG 0.567752 4_1:-21562466 Msa0540020:three_prime_UTR
TCGAACTCAAATCGGAAATG+AGG 0.569527 4_1:-21566409 Msa0540020:CDS
CCCATACGCTCCTCTGCTGG+TGG 0.570276 4_1:-21567266 Msa0540020:CDS
CTTCATCCTTCGTCCTCCGA+AGG 0.570592 4_1:+21564540 None:intergenic
AGGAAACAGTTCCAAGAGGA+TGG 0.571876 4_1:+21564159 None:intergenic
TTCGTCCTCCGAAGGAGGAA+AGG 0.571920 4_1:+21564548 None:intergenic
AAATATGAGGAAAAGGGTAT+GGG 0.577174 4_1:+21562604 None:intergenic
AGAAGGGGAACCACCAGCAG+AGG 0.577462 4_1:+21567256 None:intergenic
TATGGAAGCATTGCATAAGC+AGG 0.578504 4_1:-21564654 Msa0540020:intron
TTCTCTATATATTACCACGA+AGG 0.578985 4_1:+21562452 None:intergenic
TGATTAGCTTTCTTGTTCAG+GGG 0.580342 4_1:-21567306 Msa0540020:CDS
GGAATGAAAGCAATACTTGG+AGG 0.582187 4_1:-21562796 Msa0540020:CDS
TCAGGTACTGAGAATGCTGT+TGG 0.583882 4_1:-21564034 Msa0540020:CDS
ATGCATCATCAGTTCATGCT+CGG 0.586601 4_1:-21567345 Msa0540020:five_prime_UTR
CAACACCGCTTGATATTGAG+TGG 0.586970 4_1:-21566084 Msa0540020:CDS
AGTGTCCAACTAGTGTTGAC+GGG 0.587818 4_1:+21566361 None:intergenic
TCTAAAATGCAGTAATTCCA+CGG 0.590490 4_1:+21566171 None:intergenic
TTTCCTCCTTCGGAGGACGA+AGG 0.594535 4_1:-21564546 Msa0540020:CDS
TGGTTCTCGTGCAAAACAAG+AGG 0.599235 4_1:-21564432 Msa0540020:CDS
CAACCAATTGGATTAGGGGA+AGG 0.602651 4_1:-21567136 Msa0540020:CDS
ACAGGACATTGAGGAGAGTG+AGG 0.604794 4_1:-21562495 Msa0540020:three_prime_UTR
GTCAACACTAGTTGGACACT+GGG 0.605362 4_1:-21566358 Msa0540020:CDS
TCATGCCTTTCCTCCTTCGG+AGG 0.606723 4_1:-21564553 Msa0540020:CDS
TACAAGAGCAGCAAAGCTAT+GGG 0.609508 4_1:+21567189 None:intergenic
GGTACAGTGTCACATATTTG+CGG 0.611152 4_1:-21563756 Msa0540020:intron
TCGACGCTCAACTATTTCAG+AGG 0.611679 4_1:+21566428 None:intergenic
TCACTCATGCATCGTAGAAG+GGG 0.611816 4_1:+21567241 None:intergenic
TCATCAGTTCATGCTCGGCA+AGG 0.619121 4_1:-21567340 Msa0540020:five_prime_UTR
TCCACAACCAATTGGATTAG+GGG 0.619566 4_1:-21567140 Msa0540020:CDS
CATTCTAGGTATCAACAGGA+AGG 0.621419 4_1:-21566549 Msa0540020:intron
AATTGAAAGTAACATTGAGA+AGG 0.624329 4_1:-21567030 Msa0540020:intron
TTCCCACCAAGTACAAGCAA+CGG 0.625127 4_1:+21564202 None:intergenic
CATGAGATTCTCGAAGAGTG+TGG 0.626123 4_1:-21564073 Msa0540020:CDS
AATGAGCTAGTGAAGGCTTG+AGG 0.628529 4_1:-21562430 Msa0540020:three_prime_UTR
CCACCAGCAGAGGAGCGTAT+GGG 0.630154 4_1:+21567266 None:intergenic
ATAGAGAAATGAGCTAGTGA+AGG 0.638069 4_1:-21562437 Msa0540020:three_prime_UTR
GGCTAATGCTGTCATTAATG+CGG 0.638263 4_1:-21563139 Msa0540020:CDS
TTCTGTTGGGAAGAGTTCAG+AGG 0.641262 4_1:-21562860 Msa0540020:CDS
AGCAATAAGACATCAATGGT+AGG 0.642470 4_1:+21563673 None:intergenic
TTACCACGAAGGGCTTCCAC+CGG 0.642622 4_1:+21562463 None:intergenic
AGTGAGGTTTGAGTGACCGG+TGG 0.655804 4_1:-21562479 Msa0540020:three_prime_UTR
ATTACCTGAAGATCACGCAT+AGG 0.658828 4_1:+21563460 None:intergenic
ACAACGGTTTAAAGTGTCAG+TGG 0.659618 4_1:-21563160 Msa0540020:CDS
GAAATGACATCAGAACCAGC+AGG 0.663031 4_1:+21564139 None:intergenic
AGGCTATGGATAGAGCGCAC+AGG 0.668610 4_1:-21563257 Msa0540020:CDS
ACAAGCAAATGCCACCATTG+GGG 0.670757 4_1:+21562561 None:intergenic
GTGTCCCACTCAATATCAAG+CGG 0.676888 4_1:+21566079 None:intergenic
AACACCGCTTGATATTGAGT+GGG 0.678229 4_1:-21566083 Msa0540020:CDS
GAGTACCACGCATTATCAGA+CGG 0.679630 4_1:+21563205 None:intergenic
AGAAAGTTATGAGTCTACAA+CGG 0.684558 4_1:-21563176 Msa0540020:CDS
GTTCACCGTCTGATAATGCG+TGG 0.688954 4_1:-21563210 Msa0540020:CDS
TGCATCAGCAGAAATCCCCA+AGG 0.701752 4_1:-21563067 Msa0540020:intron
CAGCAGGAAACAGTTCCAAG+AGG 0.710835 4_1:+21564155 None:intergenic
GGACCAATCACAGTATACAG+AGG 0.726944 4_1:-21562758 Msa0540020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG - chr4_1:21562637-21562656 Msa0540020:three_prime_UTR 0.0%
!!! TTTTTTTTTTTTTTTTTTGG+AGG - chr4_1:21562640-21562659 Msa0540020:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTTTTTGGA+GGG - chr4_1:21562641-21562660 Msa0540020:three_prime_UTR 10.0%
!! TACACTTATAAATATCAAAA+TGG + chr4_1:21562678-21562697 None:intergenic 15.0%
!! TGATCAAAATAAAATACAAA+AGG + chr4_1:21563040-21563059 None:intergenic 15.0%
!!! TATTTTATTTTGATCATTCT+AGG - chr4_1:21563044-21563063 Msa0540020:intron 15.0%
!! TTAAACAATTTGACAAAATT+CGG - chr4_1:21564319-21564338 Msa0540020:intron 15.0%
!! TTAATAAAATGCCAAAATAT+TGG + chr4_1:21564807-21564826 None:intergenic 15.0%
!!! ATATTTTGGCATTTTATTAA+TGG - chr4_1:21564807-21564826 Msa0540020:intron 15.0%
!! AACTAATTTAGTAAAACTAT+CGG + chr4_1:21565793-21565812 None:intergenic 15.0%
!! ATTACATGAATAAATATGAT+TGG - chr4_1:21566611-21566630 Msa0540020:intron 15.0%
!! TTACATGAATAAATATGATT+GGG - chr4_1:21566612-21566631 Msa0540020:intron 15.0%
!!! TTTTTCTTTTCTAATGTTTT+TGG - chr4_1:21566702-21566721 Msa0540020:intron 15.0%
!!! AACATTTATTCTTTGTTTTT+TGG - chr4_1:21567207-21567226 Msa0540020:CDS 15.0%
!! ATAGAAGAAAAACAAAAGAA+GGG + chr4_1:21562948-21562967 None:intergenic 20.0%
!! AATAGAAGAAAAACAAAAGA+AGG + chr4_1:21562949-21562968 None:intergenic 20.0%
!!! AATAAACTTTTCTATCTCAA+AGG + chr4_1:21563275-21563294 None:intergenic 20.0%
!! TATAGATTTGACATGTTATT+AGG - chr4_1:21563804-21563823 Msa0540020:intron 20.0%
!!! AATGAGTTGTTATTGAATAT+TGG + chr4_1:21564405-21564424 None:intergenic 20.0%
!!! AATGATTAGATTTTTTGCAA+CGG - chr4_1:21564568-21564587 Msa0540020:intron 20.0%
!! AAAATATAAATAACATTGCC+TGG + chr4_1:21565280-21565299 None:intergenic 20.0%
!!! ATTTAAAATTGTTTGTGTGT+AGG - chr4_1:21565703-21565722 Msa0540020:intron 20.0%
!! ACTAATTTAGTAAAACTATC+GGG + chr4_1:21565792-21565811 None:intergenic 20.0%
!! GAATTTGTCAATAAATAAAC+AGG + chr4_1:21566004-21566023 None:intergenic 20.0%
!! TGTTTATATTAATAACATGC+AGG - chr4_1:21566330-21566349 Msa0540020:intron 20.0%
!! AATAATATCTGCATATAAAG+TGG + chr4_1:21566594-21566613 None:intergenic 20.0%
!! TACATGAATAAATATGATTG+GGG - chr4_1:21566613-21566632 Msa0540020:intron 20.0%
! AATTGAAAGTAACATTGAGA+AGG - chr4_1:21562577-21562596 Msa0540020:three_prime_UTR 25.0%
! AATTCAAGAATTTAGCATCA+TGG + chr4_1:21562861-21562880 None:intergenic 25.0%
! TAGAAGAAAAACAAAAGAAG+GGG + chr4_1:21562947-21562966 None:intergenic 25.0%
! TCTTCTATTTACTTGATATG+TGG - chr4_1:21562960-21562979 Msa0540020:intron 25.0%
! CCAAATAATCAATATCTTTC+CGG + chr4_1:21563408-21563427 None:intergenic 25.0%
!! CGGAAAGATATTGATTATTT+GGG - chr4_1:21563406-21563425 Msa0540020:intron 25.0%
!! AATTACTGCATTTTAGATGA+AGG - chr4_1:21563442-21563461 Msa0540020:intron 25.0%
!!! AGAATAACATAATGGACTTA+TGG - chr4_1:21563644-21563663 Msa0540020:intron 25.0%
! AGGCATCAAAAAATCAAAAA+GGG + chr4_1:21563671-21563690 None:intergenic 25.0%
! ACAATGTCTATTACAATGAT+GGG + chr4_1:21563732-21563751 None:intergenic 25.0%
! AACAATGTCTATTACAATGA+TGG + chr4_1:21563733-21563752 None:intergenic 25.0%
! TATCAGTTGCAGTTAAATTA+TGG + chr4_1:21563757-21563776 None:intergenic 25.0%
! AATTTAACTGCAACTGATAT+TGG - chr4_1:21563758-21563777 Msa0540020:intron 25.0%
!!! TATTGGTATTTGCTATGATT+TGG - chr4_1:21563775-21563794 Msa0540020:intron 25.0%
!! TTTTGCTCAAGAAATTGAAA+TGG - chr4_1:21563858-21563877 Msa0540020:CDS 25.0%
! GAATCTTCACAAACTTTATT+TGG + chr4_1:21563888-21563907 None:intergenic 25.0%
!! TGAAAACATTTTTCTGCTTA+AGG - chr4_1:21563926-21563945 Msa0540020:intron 25.0%
! AAAAGTTCCATAGGAAAAAA+AGG + chr4_1:21564538-21564557 None:intergenic 25.0%
!!! TTTTTTTCCTATGGAACTTT+TGG - chr4_1:21564537-21564556 Msa0540020:CDS 25.0%
! AATTGGCATTAATTCTTTGT+GGG - chr4_1:21564837-21564856 Msa0540020:intron 25.0%
! TAAAAAACGAGTCAAAAAAC+AGG + chr4_1:21565328-21565347 None:intergenic 25.0%
!!! GTGAACTATTTATTAGTCTT+CGG + chr4_1:21565674-21565693 None:intergenic 25.0%
!! TGTTCATATTTTCCTTTTCA+TGG - chr4_1:21565830-21565849 Msa0540020:intron 25.0%
!!! TTTTTTTTTTTTTTCCAGCC+TGG - chr4_1:21566195-21566214 Msa0540020:CDS 25.0%
! ACATGAATAAATATGATTGG+GGG - chr4_1:21566614-21566633 Msa0540020:intron 25.0%
! TAGAAAAGAAAAACAAACCA+GGG + chr4_1:21566695-21566714 None:intergenic 25.0%
! TTAGAAAAGAAAAACAAACC+AGG + chr4_1:21566696-21566715 None:intergenic 25.0%
!! TTTGGCATGATAATTTGTAT+AGG - chr4_1:21566720-21566739 Msa0540020:intron 25.0%
!! TTGGCATGATAATTTGTATA+GGG - chr4_1:21566721-21566740 Msa0540020:intron 25.0%
!! GTACAATTTGAGTCAATTTT+TGG - chr4_1:21566873-21566892 Msa0540020:intron 25.0%
! ATGTCAAAATTTGTAGTCTT+GGG + chr4_1:21566960-21566979 None:intergenic 25.0%
! AATGTCAAAATTTGTAGTCT+TGG + chr4_1:21566961-21566980 None:intergenic 25.0%
! AATAGTAACGACAAAATATG+AGG + chr4_1:21567019-21567038 None:intergenic 25.0%
!!! TACTATTTTTATTACCCCAA+TGG - chr4_1:21567032-21567051 Msa0540020:CDS 25.0%
! AACATAGCAAACAAAAAGTA+AGG + chr4_1:21567296-21567315 None:intergenic 25.0%
!! TTGATTAGCTTTCTTGTTCA+GGG - chr4_1:21562300-21562319 Msa0540020:three_prime_UTR 30.0%
! TGCAGAAGATTTACATTTTC+TGG - chr4_1:21562506-21562525 Msa0540020:three_prime_UTR 30.0%
AAAAAAAAAAACTCACACGC+TGG + chr4_1:21562628-21562647 None:intergenic 30.0%
TACTAGGTTTAATGGAATGT+TGG - chr4_1:21562713-21562732 Msa0540020:exon 30.0%
ACTAGGTTTAATGGAATGTT+GGG - chr4_1:21562714-21562733 Msa0540020:exon 30.0%
TTTAAATCTTCTCACAGTTC+CGG - chr4_1:21562780-21562799 Msa0540020:CDS 30.0%
CACTTCACAAAGAAATTTGA+TGG + chr4_1:21562815-21562834 None:intergenic 30.0%
!! AATTCTTGAATTTTCGAGCT+TGG - chr4_1:21562869-21562888 Msa0540020:intron 30.0%
! TGTGTTGTTAGTGATGTTTA+TGG - chr4_1:21562985-21563004 Msa0540020:intron 30.0%
! GTGTTGTTAGTGATGTTTAT+GGG - chr4_1:21562986-21563005 Msa0540020:intron 30.0%
! TGGAATTTTATGTGATGACA+TGG - chr4_1:21563120-21563139 Msa0540020:CDS 30.0%
! GGAATTTTATGTGATGACAT+GGG - chr4_1:21563121-21563140 Msa0540020:CDS 30.0%
! GAATTTTATGTGATGACATG+GGG - chr4_1:21563122-21563141 Msa0540020:CDS 30.0%
! ATATCTAGTCTTCAGTATGT+TGG - chr4_1:21563307-21563326 Msa0540020:intron 30.0%
! TATCTAGTCTTCAGTATGTT+GGG - chr4_1:21563308-21563327 Msa0540020:intron 30.0%
TAACATCATATGATGTTGTC+CGG - chr4_1:21563386-21563405 Msa0540020:intron 30.0%
! CCGGAAAGATATTGATTATT+TGG - chr4_1:21563405-21563424 Msa0540020:intron 30.0%
! TCTAAAATGCAGTAATTCCA+CGG + chr4_1:21563439-21563458 None:intergenic 30.0%
TTATGTTATTCTGCAAGAGA+TGG + chr4_1:21563636-21563655 None:intergenic 30.0%
TCTCTTGCAGAATAACATAA+TGG - chr4_1:21563636-21563655 Msa0540020:intron 30.0%
CAGGCATCAAAAAATCAAAA+AGG + chr4_1:21563672-21563691 None:intergenic 30.0%
!!! CTTTTTGATTTTTTGATGCC+TGG - chr4_1:21563670-21563689 Msa0540020:CDS 30.0%
! AATCTCTGTTTTGTATATCG+AGG - chr4_1:21563960-21563979 Msa0540020:intron 30.0%
TTATCACAAATGTGATGTAG+TGG - chr4_1:21564025-21564044 Msa0540020:CDS 30.0%
! CAAGAGAAACTATACTTTTG+AGG + chr4_1:21564070-21564089 None:intergenic 30.0%
AATGGAATGATTACATCAGT+TGG - chr4_1:21564119-21564138 Msa0540020:CDS 30.0%
! CACATGTAATAACTAGTTCT+AGG - chr4_1:21564208-21564227 Msa0540020:CDS 30.0%
AATTATGCTGCTACATTGTA+TGG - chr4_1:21564294-21564313 Msa0540020:intron 30.0%
TGACAAAATTCGGATAGAAT+TGG - chr4_1:21564329-21564348 Msa0540020:intron 30.0%
! ATAGAATTGGCCAAGATTTT+TGG - chr4_1:21564342-21564361 Msa0540020:intron 30.0%
! TAGAATTGGCCAAGATTTTT+GGG - chr4_1:21564343-21564362 Msa0540020:intron 30.0%
AACTCATTCACACAAAAGTA+TGG - chr4_1:21564417-21564436 Msa0540020:CDS 30.0%
!!! AAGCTTTCCTTTTTTTCCTA+TGG - chr4_1:21564528-21564547 Msa0540020:CDS 30.0%
! ATATGTGCTAATTTTCCTCA+TGG - chr4_1:21564693-21564712 Msa0540020:CDS 30.0%
TTAGCGAAGTATAACATAGA+TGG + chr4_1:21564761-21564780 None:intergenic 30.0%
AATGCCAAAATATTGGCAAT+TGG + chr4_1:21564800-21564819 None:intergenic 30.0%
TTATTAATGGCTGTTCCAAT+TGG - chr4_1:21564820-21564839 Msa0540020:intron 30.0%
CACAAAGAATTAATGCCAAT+TGG + chr4_1:21564838-21564857 None:intergenic 30.0%
CAATTGGCATTAATTCTTTG+TGG - chr4_1:21564836-21564855 Msa0540020:intron 30.0%
! AATTATTTTCTCTGGCAGAT+CGG + chr4_1:21565099-21565118 None:intergenic 30.0%
! CTGTCTTGAATTATTTTCTC+TGG + chr4_1:21565107-21565126 None:intergenic 30.0%
! AAACTTTACGAACAGTTTTC+TGG - chr4_1:21565155-21565174 Msa0540020:intron 30.0%
!! CTGAAAAATGAATGGGTTTT+AGG + chr4_1:21565353-21565372 None:intergenic 30.0%
!! CTAAAACCCATTCATTTTTC+AGG - chr4_1:21565351-21565370 Msa0540020:intron 30.0%
CTTGATATTTGCTCAACATA+AGG - chr4_1:21565614-21565633 Msa0540020:intron 30.0%
TAATATTTACCCCTTTCCTT+GGG - chr4_1:21565637-21565656 Msa0540020:intron 30.0%
TACAATTTCAAATCGCTTCT+CGG + chr4_1:21565896-21565915 None:intergenic 30.0%
TAAATAAACAGGTAGATCGA+AGG + chr4_1:21565993-21566012 None:intergenic 30.0%
ATGAAGTTCTCTATTTGTAG+TGG - chr4_1:21566062-21566081 Msa0540020:intron 30.0%
TGAAGTTCTCTATTTGTAGT+GGG - chr4_1:21566063-21566082 Msa0540020:intron 30.0%
!!! TTTTGACTTTTGATGGTGAA+TGG - chr4_1:21566218-21566237 Msa0540020:CDS 30.0%
TAAGACACTTATTCCCTAAA+AGG + chr4_1:21566302-21566321 None:intergenic 30.0%
TATTAATAACATGCAGGCTA+TGG - chr4_1:21566336-21566355 Msa0540020:intron 30.0%
AGAAAGTTATGAGTCTACAA+CGG - chr4_1:21566431-21566450 Msa0540020:CDS 30.0%
TAAACAAGTAGTAGTACCTT+GGG + chr4_1:21566559-21566578 None:intergenic 30.0%
ATAAACAAGTAGTAGTACCT+TGG + chr4_1:21566560-21566579 None:intergenic 30.0%
ATCTCAGTTAAACTTCATTC+AGG + chr4_1:21566648-21566667 None:intergenic 30.0%
! TGGCATGATAATTTGTATAG+GGG - chr4_1:21566722-21566741 Msa0540020:intron 30.0%
TTCCACTGCCTAATAATTTA+GGG + chr4_1:21566789-21566808 None:intergenic 30.0%
TTTCCACTGCCTAATAATTT+AGG + chr4_1:21566790-21566809 None:intergenic 30.0%
TAAATTATTAGGCAGTGGAA+AGG - chr4_1:21566789-21566808 Msa0540020:intron 30.0%
AAATTATTAGGCAGTGGAAA+GGG - chr4_1:21566790-21566809 Msa0540020:intron 30.0%
! AAATATGAGGAAAAGGGTAT+GGG + chr4_1:21567006-21567025 None:intergenic 30.0%
AAAATATGAGGAAAAGGGTA+TGG + chr4_1:21567007-21567026 None:intergenic 30.0%
ACGACAAAATATGAGGAAAA+GGG + chr4_1:21567012-21567031 None:intergenic 30.0%
AACGACAAAATATGAGGAAA+AGG + chr4_1:21567013-21567032 None:intergenic 30.0%
!! TATTTTTATTACCCCAATGG+TGG - chr4_1:21567035-21567054 Msa0540020:CDS 30.0%
!! ATCAGTGTCTGTATTTTTAC+AGG - chr4_1:21567094-21567113 Msa0540020:CDS 30.0%
!! TGTATTTTTACAGGACATTG+AGG - chr4_1:21567103-21567122 Msa0540020:CDS 30.0%
TCTCTATATATTACCACGAA+GGG + chr4_1:21567157-21567176 None:intergenic 30.0%
TTCTCTATATATTACCACGA+AGG + chr4_1:21567158-21567177 None:intergenic 30.0%
!! GTTGATTAGCTTTCTTGTTC+AGG - chr4_1:21562299-21562318 Msa0540020:three_prime_UTR 35.0%
!! TGATTAGCTTTCTTGTTCAG+GGG - chr4_1:21562301-21562320 Msa0540020:three_prime_UTR 35.0%
TTCCACAACCAATTGGATTA+GGG - chr4_1:21562466-21562485 Msa0540020:three_prime_UTR 35.0%
TGAGAAGGTAAATTAGACTG+TGG - chr4_1:21562592-21562611 Msa0540020:three_prime_UTR 35.0%
GGTAAATTAGACTGTGGTTT+AGG - chr4_1:21562598-21562617 Msa0540020:three_prime_UTR 35.0%
ATTAAACCTAGTACTAGCAG+AGG + chr4_1:21562706-21562725 None:intergenic 35.0%
TCTGCTAGTACTAGGTTTAA+TGG - chr4_1:21562705-21562724 Msa0540020:exon 35.0%
TTTAATGGAATGTTGGGTGT+TGG - chr4_1:21562720-21562739 Msa0540020:CDS 35.0%
AAGAAAAACAAAAGAAGGGG+TGG + chr4_1:21562944-21562963 None:intergenic 35.0%
TGATCATTCTAGGTATCAAC+AGG - chr4_1:21563054-21563073 Msa0540020:intron 35.0%
! ATCAACAGGAAGGCATAAAT+TGG - chr4_1:21563068-21563087 Msa0540020:CDS 35.0%
CTGAAACGTTTCAAACTTCA+TGG - chr4_1:21563100-21563119 Msa0540020:CDS 35.0%
GACGGGCAAATAATTAAAGA+TGG + chr4_1:21563232-21563251 None:intergenic 35.0%
AGCAAGAGTAACTTTAGACT+TGG + chr4_1:21563485-21563504 None:intergenic 35.0%
TGACACGTTAATCAGATTAG+TGG + chr4_1:21563613-21563632 None:intergenic 35.0%
! TTTTTGATGCCTGGATTTCT+CGG - chr4_1:21563679-21563698 Msa0540020:CDS 35.0%
CAAACAAAATGATGTCTGCA+TGG + chr4_1:21563997-21564016 None:intergenic 35.0%
!! ACAAATGTGATGTAGTGGAT+GGG - chr4_1:21564030-21564049 Msa0540020:CDS 35.0%
! AGAATTGGCCAAGATTTTTG+GGG - chr4_1:21564344-21564363 Msa0540020:intron 35.0%
!! AGTGGTTGGCTTATTCAAAA+TGG - chr4_1:21564368-21564387 Msa0540020:CDS 35.0%
GGAAAAAAAGGAAAGCTTGT+TGG + chr4_1:21564526-21564545 None:intergenic 35.0%
CATACAACCAAAAGTTCCAT+AGG + chr4_1:21564547-21564566 None:intergenic 35.0%
! CATAAAAGCACATTACCATG+AGG + chr4_1:21564711-21564730 None:intergenic 35.0%
!! CTCATGGTAATGTGCTTTTA+TGG - chr4_1:21564709-21564728 Msa0540020:CDS 35.0%
ATGGCTAAGACTAGAAGAAA+CGG + chr4_1:21564742-21564761 None:intergenic 35.0%
! CATGCCAATTGCCAATATTT+TGG - chr4_1:21564793-21564812 Msa0540020:intron 35.0%
! CAATTTTGCAGTGCAGTAAT+GGG + chr4_1:21564992-21565011 None:intergenic 35.0%
! AGAACAAAAGTACATCCAGT+TGG + chr4_1:21565029-21565048 None:intergenic 35.0%
! TGGATGTACTTTTGTTCTCT+AGG - chr4_1:21565031-21565050 Msa0540020:intron 35.0%
GAGTCAAAAAACAGGTTTGA+TGG + chr4_1:21565320-21565339 None:intergenic 35.0%
TGAGTGCCTGAAAAATGAAT+GGG + chr4_1:21565360-21565379 None:intergenic 35.0%
TTGAGTGCCTGAAAAATGAA+TGG + chr4_1:21565361-21565380 None:intergenic 35.0%
!! TCATGAAGAGCAACTAGTTT+TGG + chr4_1:21565519-21565538 None:intergenic 35.0%
GTAATATTTACCCCTTTCCT+TGG - chr4_1:21565636-21565655 Msa0540020:intron 35.0%
AATATTTACCCCTTTCCTTG+GGG - chr4_1:21565638-21565657 Msa0540020:intron 35.0%
TGTTTCAGACTCACATGAAA+AGG - chr4_1:21565753-21565772 Msa0540020:intron 35.0%
AGCAATAAGACATCAATGGT+AGG + chr4_1:21565937-21565956 None:intergenic 35.0%
CGTAAGCAATAAGACATCAA+TGG + chr4_1:21565941-21565960 None:intergenic 35.0%
AAACAAGTAGTAGTACCTTG+GGG + chr4_1:21566558-21566577 None:intergenic 35.0%
AAAAGAAAAACAAACCAGGG+TGG + chr4_1:21566692-21566711 None:intergenic 35.0%
GATGGAGACCCTAAATTATT+AGG - chr4_1:21566778-21566797 Msa0540020:intron 35.0%
AAGGGAATGAAAGCAATACT+TGG - chr4_1:21566808-21566827 Msa0540020:intron 35.0%
!!! CAATTTTTGGCGAAGCTTAA+TGG - chr4_1:21566886-21566905 Msa0540020:intron 35.0%
ATAGAGAAATGAGCTAGTGA+AGG - chr4_1:21567170-21567189 Msa0540020:CDS 35.0%
ATCACTCATGCATCGTAGAA+GGG + chr4_1:21562370-21562389 None:intergenic 40.0%
AATCACTCATGCATCGTAGA+AGG + chr4_1:21562371-21562390 None:intergenic 40.0%
TACAAGAGCAGCAAAGCTAT+GGG + chr4_1:21562421-21562440 None:intergenic 40.0%
GTTCCACAACCAATTGGATT+AGG - chr4_1:21562465-21562484 Msa0540020:three_prime_UTR 40.0%
! TCCACAACCAATTGGATTAG+GGG - chr4_1:21562467-21562486 Msa0540020:three_prime_UTR 40.0%
AATTTGATGGAAACACCAGC+CGG + chr4_1:21562802-21562821 None:intergenic 40.0%
CATTCTAGGTATCAACAGGA+AGG - chr4_1:21563058-21563077 Msa0540020:intron 40.0%
ACTTCAAGCATCAGCAATTG+TGG - chr4_1:21563156-21563175 Msa0540020:CDS 40.0%
TCGAACTCAAATCGGAAATG+AGG - chr4_1:21563198-21563217 Msa0540020:CDS 40.0%
ACTCAATATCAAGCGGTGTT+GGG + chr4_1:21563524-21563543 None:intergenic 40.0%
AACACCGCTTGATATTGAGT+GGG - chr4_1:21563524-21563543 Msa0540020:CDS 40.0%
ATTTCTCGGAACAGATAGAC+AGG - chr4_1:21563693-21563712 Msa0540020:CDS 40.0%
! CTCTGTTTTGTATATCGAGG+AGG - chr4_1:21563963-21563982 Msa0540020:intron 40.0%
! TTTTGTATATCGAGGAGGCA+GGG - chr4_1:21563968-21563987 Msa0540020:intron 40.0%
! CACAAATGTGATGTAGTGGA+TGG - chr4_1:21564029-21564048 Msa0540020:CDS 40.0%
AACCACTACCCCAAAAATCT+TGG + chr4_1:21564355-21564374 None:intergenic 40.0%
!!! AAGATTTTTGGGGTAGTGGT+TGG - chr4_1:21564354-21564373 Msa0540020:intron 40.0%
! TATGCACAACTCTGTTTTGC+TGG + chr4_1:21564635-21564654 None:intergenic 40.0%
TACCAGTTCCAAAGCACATA+TGG - chr4_1:21564864-21564883 Msa0540020:intron 40.0%
!! TTCCATATGTGCTTTGGAAC+TGG + chr4_1:21564869-21564888 None:intergenic 40.0%
! GTGGTTTTCCATATGTGCTT+TGG + chr4_1:21564875-21564894 None:intergenic 40.0%
GGATCTCTTGAAGCTAAAAG+TGG + chr4_1:21564894-21564913 None:intergenic 40.0%
!! TATGGAAGCATTGCATAAGC+AGG - chr4_1:21564953-21564972 Msa0540020:intron 40.0%
! CCAATTTTGCAGTGCAGTAA+TGG + chr4_1:21564993-21565012 None:intergenic 40.0%
CCATTACTGCACTGCAAAAT+TGG - chr4_1:21564990-21565009 Msa0540020:intron 40.0%
!!! CAACTAGTTTTGGAGAGTGA+TGG + chr4_1:21565509-21565528 None:intergenic 40.0%
! ATTCTCGAAGAGTGTGGAAT+TGG - chr4_1:21565540-21565559 Msa0540020:intron 40.0%
TAGTAAAACTATCGGGATCC+AGG + chr4_1:21565785-21565804 None:intergenic 40.0%
TGTGACACTGTACCATGAAA+AGG + chr4_1:21565845-21565864 None:intergenic 40.0%
GGTACAGTGTCACATATTTG+CGG - chr4_1:21565851-21565870 Msa0540020:intron 40.0%
! GTCTTATTGCTTACGACTCA+TGG - chr4_1:21565946-21565965 Msa0540020:CDS 40.0%
ATAAACAGGTAGATCGAAGG+AGG + chr4_1:21565990-21566009 None:intergenic 40.0%
! AGTTCTCTATTTGTAGTGGG+CGG - chr4_1:21566066-21566085 Msa0540020:intron 40.0%
!!! TGCAGATACCCTTGTTTTTG+TGG - chr4_1:21566110-21566129 Msa0540020:CDS 40.0%
GTCATGCTCCACAAAAACAA+GGG + chr4_1:21566121-21566140 None:intergenic 40.0%
AGTCATGCTCCACAAAAACA+AGG + chr4_1:21566122-21566141 None:intergenic 40.0%
!!! TTGTTTTTGTGGAGCATGAC+TGG - chr4_1:21566121-21566140 Msa0540020:CDS 40.0%
ATTACCTGAAGATCACGCAT+AGG + chr4_1:21566150-21566169 None:intergenic 40.0%
ATCAAAAGTCAAAACCAGGC+TGG + chr4_1:21566212-21566231 None:intergenic 40.0%
!!! AGCCTGGTTTTGACTTTTGA+TGG - chr4_1:21566211-21566230 Msa0540020:CDS 40.0%
CACCATCAAAAGTCAAAACC+AGG + chr4_1:21566216-21566235 None:intergenic 40.0%
! ACAACGGTTTAAAGTGTCAG+TGG - chr4_1:21566447-21566466 Msa0540020:CDS 40.0%
GGCTAATGCTGTCATTAATG+CGG - chr4_1:21566468-21566487 Msa0540020:CDS 40.0%
TTTGTATAGGGGTCTTCTGT+TGG - chr4_1:21566733-21566752 Msa0540020:intron 40.0%
TTGTATAGGGGTCTTCTGTT+GGG - chr4_1:21566734-21566753 Msa0540020:intron 40.0%
GACCCTAAATTATTAGGCAG+TGG - chr4_1:21566784-21566803 Msa0540020:intron 40.0%
GGAATGAAAGCAATACTTGG+AGG - chr4_1:21566811-21566830 Msa0540020:intron 40.0%
GAAAGCAATACTTGGAGGAT+TGG - chr4_1:21566816-21566835 Msa0540020:intron 40.0%
ACTCCTCTGTATACTGTGAT+TGG + chr4_1:21566855-21566874 None:intergenic 40.0%
!! CTCTGACTCTGAAATGAATC+TGG + chr4_1:21566920-21566939 None:intergenic 40.0%
TTACTTGCCTGTATGGAAAC+AGG + chr4_1:21567074-21567093 None:intergenic 40.0%
!! CACTGATTTACTTGCCTGTA+TGG + chr4_1:21567081-21567100 None:intergenic 40.0%
TCACTCATGCATCGTAGAAG+GGG + chr4_1:21562369-21562388 None:intergenic 45.0%
GTACAAGAGCAGCAAAGCTA+TGG + chr4_1:21562422-21562441 None:intergenic 45.0%
CCACGTGCTAAAGGAAGTAA+TGG + chr4_1:21562444-21562463 None:intergenic 45.0%
CCATTACTTCCTTTAGCACG+TGG - chr4_1:21562441-21562460 Msa0540020:three_prime_UTR 45.0%
TCCCCTAATCCAATTGGTTG+TGG + chr4_1:21562471-21562490 None:intergenic 45.0%
! CAACCAATTGGATTAGGGGA+AGG - chr4_1:21562471-21562490 Msa0540020:three_prime_UTR 45.0%
ACACCTTCCCCTAATCCAAT+TGG + chr4_1:21562477-21562496 None:intergenic 45.0%
ATGACACCTCTGCTAGTACT+AGG - chr4_1:21562697-21562716 Msa0540020:three_prime_UTR 45.0%
TTATGTGATGACATGGGGCT+TGG - chr4_1:21563127-21563146 Msa0540020:CDS 45.0%
TCGACGCTCAACTATTTCAG+AGG + chr4_1:21563182-21563201 None:intergenic 45.0%
!! GTTGAGCGTCGAACTCAAAT+CGG - chr4_1:21563190-21563209 Msa0540020:CDS 45.0%
ATTTGCCCGTCAACACTAGT+TGG - chr4_1:21563241-21563260 Msa0540020:CDS 45.0%
!! AGTGTCCAACTAGTGTTGAC+GGG + chr4_1:21563249-21563268 None:intergenic 45.0%
! CAGTGTCCAACTAGTGTTGA+CGG + chr4_1:21563250-21563269 None:intergenic 45.0%
GTCAACACTAGTTGGACACT+GGG - chr4_1:21563249-21563268 Msa0540020:CDS 45.0%
CACTCAATATCAAGCGGTGT+TGG + chr4_1:21563525-21563544 None:intergenic 45.0%
CAACACCGCTTGATATTGAG+TGG - chr4_1:21563523-21563542 Msa0540020:CDS 45.0%
GTGTCCCACTCAATATCAAG+CGG + chr4_1:21563531-21563550 None:intergenic 45.0%
ATTGAGTGGGACACCAATAC+AGG - chr4_1:21563537-21563556 Msa0540020:intron 45.0%
CAGTCATCACCTACCTGTAT+TGG + chr4_1:21563553-21563572 None:intergenic 45.0%
CTATCTGTTCCGAGAAATCC+AGG + chr4_1:21563691-21563710 None:intergenic 45.0%
! GTTTTGTATATCGAGGAGGC+AGG - chr4_1:21563967-21563986 Msa0540020:intron 45.0%
TGCTGTCCAATTGTCTCTGA+TGG - chr4_1:21564090-21564109 Msa0540020:CDS 45.0%
GCTGTCCAATTGTCTCTGAT+GGG - chr4_1:21564091-21564110 Msa0540020:CDS 45.0%
CTGTCCAATTGTCTCTGATG+GGG - chr4_1:21564092-21564111 Msa0540020:CDS 45.0%
! CACACAAAAGTATGGCTGTC+TGG - chr4_1:21564425-21564444 Msa0540020:CDS 45.0%
!! GGCACTAATTTGGCTTTGGT+AGG + chr4_1:21564476-21564495 None:intergenic 45.0%
! CAGTGGCACTAATTTGGCTT+TGG + chr4_1:21564480-21564499 None:intergenic 45.0%
AGCAAGCAGTGGCACTAATT+TGG + chr4_1:21564486-21564505 None:intergenic 45.0%
! CACAACTCTGTTTTGCTGGT+GGG + chr4_1:21564631-21564650 None:intergenic 45.0%
! AGATCCAAAGTGCTCTGCTA+AGG - chr4_1:21564908-21564927 Msa0540020:intron 45.0%
! GGTGTGTTTTCTCTTCCAAC+TGG - chr4_1:21565011-21565030 Msa0540020:intron 45.0%
TGGTTCTCGTGCAAAACAAG+AGG - chr4_1:21565175-21565194 Msa0540020:intron 45.0%
! AGCGTCTTCACATGTTTTCC+AGG - chr4_1:21565259-21565278 Msa0540020:intron 45.0%
AGTCATCCGTTGCTTGTACT+TGG - chr4_1:21565399-21565418 Msa0540020:intron 45.0%
ATCCGTTGCTTGTACTTGGT+GGG - chr4_1:21565403-21565422 Msa0540020:intron 45.0%
TTCCCACCAAGTACAAGCAA+CGG + chr4_1:21565408-21565427 None:intergenic 45.0%
AGGATGGTAGAGAGTGAATC+TGG + chr4_1:21565435-21565454 None:intergenic 45.0%
TTCACTCTCTACCATCCTCT+TGG - chr4_1:21565437-21565456 Msa0540020:intron 45.0%
AGGAAACAGTTCCAAGAGGA+TGG + chr4_1:21565451-21565470 None:intergenic 45.0%
GAAATGACATCAGAACCAGC+AGG + chr4_1:21565471-21565490 None:intergenic 45.0%
CATGAGATTCTCGAAGAGTG+TGG - chr4_1:21565534-21565553 Msa0540020:intron 45.0%
!! GGAATTGGAGTTGATGCTTC+AGG - chr4_1:21565555-21565574 Msa0540020:intron 45.0%
!! TCAGGTACTGAGAATGCTGT+TGG - chr4_1:21565573-21565592 Msa0540020:intron 45.0%
ACTGAGAATGCTGTTGGCAT+TGG - chr4_1:21565579-21565598 Msa0540020:intron 45.0%
CTGAGAATGCTGTTGGCATT+GGG - chr4_1:21565580-21565599 Msa0540020:intron 45.0%
GAAATTAGCCCCAAGGAAAG+GGG + chr4_1:21565649-21565668 None:intergenic 45.0%
CGAAATTAGCCCCAAGGAAA+GGG + chr4_1:21565650-21565669 None:intergenic 45.0%
ACGAAATTAGCCCCAAGGAA+AGG + chr4_1:21565651-21565670 None:intergenic 45.0%
TGTTTGTGTGTAGGCGTTCT+TGG - chr4_1:21565712-21565731 Msa0540020:intron 45.0%
! CACATGAAAAGGTACGATCC+TGG - chr4_1:21565764-21565783 Msa0540020:intron 45.0%
!! GTTCTCTATTTGTAGTGGGC+GGG - chr4_1:21566067-21566086 Msa0540020:intron 45.0%
GAATCCTATGCGTGATCTTC+AGG - chr4_1:21566143-21566162 Msa0540020:CDS 45.0%
!! TGGGCATTGAAGATGGTAAG+AGG + chr4_1:21566265-21566284 None:intergenic 45.0%
! CACTCTCGTCTTGCCTTTTA+GGG - chr4_1:21566286-21566305 Msa0540020:CDS 45.0%
GAGTACCACGCATTATCAGA+CGG + chr4_1:21566405-21566424 None:intergenic 45.0%
! TCTGATAATGCGTGGTACTC+TGG - chr4_1:21566405-21566424 Msa0540020:CDS 45.0%
AGCAATACTTGGAGGATTGG+AGG - chr4_1:21566819-21566838 Msa0540020:intron 45.0%
TTGGAGGATTGGAGGATCTA+TGG - chr4_1:21566827-21566846 Msa0540020:intron 45.0%
TGGAGGATTGGAGGATCTAT+GGG - chr4_1:21566828-21566847 Msa0540020:intron 45.0%
GGACCAATCACAGTATACAG+AGG - chr4_1:21566849-21566868 Msa0540020:intron 45.0%
ACAAGCAAATGCCACCATTG+GGG + chr4_1:21567049-21567068 None:intergenic 45.0%
CACAAGCAAATGCCACCATT+GGG + chr4_1:21567050-21567069 None:intergenic 45.0%
ACACAAGCAAATGCCACCAT+TGG + chr4_1:21567051-21567070 None:intergenic 45.0%
CTTGTGTCCTGTTTCCATAC+AGG - chr4_1:21567064-21567083 Msa0540020:CDS 45.0%
AATGAGCTAGTGAAGGCTTG+AGG - chr4_1:21567177-21567196 Msa0540020:CDS 45.0%
TCATCAGTTCATGCTCGGCA+AGG - chr4_1:21562267-21562286 Msa0540020:three_prime_UTR 50.0%
AGCTTTCTTGTTCAGGGGCT+TGG - chr4_1:21562306-21562325 Msa0540020:three_prime_UTR 50.0%
TGTGGAACACCACGTGCTAA+AGG + chr4_1:21562453-21562472 None:intergenic 50.0%
CGTGGTGTTCCACAACCAAT+TGG - chr4_1:21562459-21562478 Msa0540020:three_prime_UTR 50.0%
AATCTTCTCACAGTTCCGGC+TGG - chr4_1:21562784-21562803 Msa0540020:CDS 50.0%
CGTCAACACTAGTTGGACAC+TGG - chr4_1:21563248-21563267 Msa0540020:CDS 50.0%
TCAGTATGTTGGGTCTGCTC+AGG - chr4_1:21563318-21563337 Msa0540020:intron 50.0%
! ATTATTTGGGACAGCTGCCG+TGG - chr4_1:21563419-21563438 Msa0540020:intron 50.0%
AGTGGGACACCAATACAGGT+AGG - chr4_1:21563541-21563560 Msa0540020:intron 50.0%
CCATCCCCATCAGAGACAAT+TGG + chr4_1:21564099-21564118 None:intergenic 50.0%
CCAATTGTCTCTGATGGGGA+TGG - chr4_1:21564096-21564115 Msa0540020:CDS 50.0%
TGTCTCTGATGGGGATGGAA+TGG - chr4_1:21564101-21564120 Msa0540020:CDS 50.0%
!!! GGCCAAGATTTTTGGGGTAG+TGG - chr4_1:21564350-21564369 Msa0540020:intron 50.0%
! TGCCACTGCTTGCTGAAGTA+CGG - chr4_1:21564492-21564511 Msa0540020:CDS 50.0%
TTCCGTACTTCAGCAAGCAG+TGG + chr4_1:21564497-21564516 None:intergenic 50.0%
!! TGGTGGGAAGGTGTTTCTGT+GGG + chr4_1:21564615-21564634 None:intergenic 50.0%
! ACTCTGTTTTGCTGGTGGGA+AGG + chr4_1:21564627-21564646 None:intergenic 50.0%
! GCACAACTCTGTTTTGCTGG+TGG + chr4_1:21564632-21564651 None:intergenic 50.0%
! GCATCCTTAGCAGAGCACTT+TGG + chr4_1:21564915-21564934 None:intergenic 50.0%
TCTGCTAAGGATGCTGAAGC+TGG - chr4_1:21564921-21564940 Msa0540020:intron 50.0%
! TGAAGCTGGAGCACTTGCTA+TGG - chr4_1:21564935-21564954 Msa0540020:intron 50.0%
AGGTCATGCCTTTCCTCCTT+CGG - chr4_1:21565051-21565070 Msa0540020:intron 50.0%
AATGAGTCAGCTGCAGCAGA+AGG - chr4_1:21565218-21565237 Msa0540020:intron 50.0%
CATCCGTTGCTTGTACTTGG+TGG - chr4_1:21565402-21565421 Msa0540020:intron 50.0%
CAGCAGGAAACAGTTCCAAG+AGG + chr4_1:21565455-21565474 None:intergenic 50.0%
CTCTTGGAACTGTTTCCTGC+TGG - chr4_1:21565453-21565472 Msa0540020:intron 50.0%
! TGTTGGCATTGGGCAGCATA+GGG - chr4_1:21565590-21565609 Msa0540020:intron 50.0%
TTCGGACGAAATTAGCCCCA+AGG + chr4_1:21565656-21565675 None:intergenic 50.0%
CAGTGTCACATATTTGCGGC+TGG - chr4_1:21565855-21565874 Msa0540020:intron 50.0%
GTCACATATTTGCGGCTGGA+TGG - chr4_1:21565859-21565878 Msa0540020:intron 50.0%
!! CAAGGGTATCTGCAGATGTC+AGG + chr4_1:21566104-21566123 None:intergenic 50.0%
GGAAATGCTGCCTTCTTGCA+TGG - chr4_1:21566239-21566258 Msa0540020:CDS 50.0%
TGGTAAGAGGCCATGCAAGA+AGG + chr4_1:21566252-21566271 None:intergenic 50.0%
!! AGAGTGCTGGGCATTGAAGA+TGG + chr4_1:21566272-21566291 None:intergenic 50.0%
!! AAAGGCAAGACGAGAGTGCT+GGG + chr4_1:21566284-21566303 None:intergenic 50.0%
! AAAAGGCAAGACGAGAGTGC+TGG + chr4_1:21566285-21566304 None:intergenic 50.0%
! GCACTCTCGTCTTGCCTTTT+AGG - chr4_1:21566285-21566304 Msa0540020:CDS 50.0%
ATGGATAGAGCGCACAGGTT+AGG - chr4_1:21566355-21566374 Msa0540020:CDS 50.0%
! GTTCACCGTCTGATAATGCG+TGG - chr4_1:21566397-21566416 Msa0540020:CDS 50.0%
TGCATCAGCAGAAATCCCCA+AGG - chr4_1:21566540-21566559 Msa0540020:CDS 50.0%
TGCGTGAATGTTAACCACCC+TGG - chr4_1:21566675-21566694 Msa0540020:intron 50.0%
ACAGGACATTGAGGAGAGTG+AGG - chr4_1:21567112-21567131 Msa0540020:CDS 50.0%
GAGAGTGAGGTTTGAGTGAC+CGG - chr4_1:21567125-21567144 Msa0540020:CDS 50.0%
AGCTAGTGAAGGCTTGAGGA+TGG - chr4_1:21567181-21567200 Msa0540020:CDS 50.0%
!! TCAGGGGCTTGGTGTAGAGT+TGG - chr4_1:21562317-21562336 Msa0540020:three_prime_UTR 55.0%
GGGGTGGTTTATCGCAGATG+AGG + chr4_1:21562928-21562947 None:intergenic 55.0%
!! CTGGTGGGAAGGTGTTTCTG+TGG + chr4_1:21564616-21564635 None:intergenic 55.0%
TCATGCCTTTCCTCCTTCGG+AGG - chr4_1:21565054-21565073 Msa0540020:intron 55.0%
TTCGTCCTCCGAAGGAGGAA+AGG + chr4_1:21565062-21565081 None:intergenic 55.0%
TTTCCTCCTTCGGAGGACGA+AGG - chr4_1:21565061-21565080 Msa0540020:intron 55.0%
CTTCATCCTTCGTCCTCCGA+AGG + chr4_1:21565070-21565089 None:intergenic 55.0%
! CTGTTGGCATTGGGCAGCAT+AGG - chr4_1:21565589-21565608 Msa0540020:intron 55.0%
!! CTATTTGTAGTGGGCGGGCT+TGG - chr4_1:21566072-21566091 Msa0540020:CDS 55.0%
AGGCTATGGATAGAGCGCAC+AGG - chr4_1:21566350-21566369 Msa0540020:CDS 55.0%
AGTGAGGTTTGAGTGACCGG+TGG - chr4_1:21567128-21567147 Msa0540020:CDS 55.0%
TTACCACGAAGGGCTTCCAC+CGG + chr4_1:21567147-21567166 None:intergenic 55.0%
GTTCATGCTCGGCAAGGAGC+AGG - chr4_1:21562273-21562292 Msa0540020:three_prime_UTR 60.0%
! CCACCAGCAGAGGAGCGTAT+GGG + chr4_1:21562344-21562363 None:intergenic 60.0%
! ACCACCAGCAGAGGAGCGTA+TGG + chr4_1:21562345-21562364 None:intergenic 60.0%
AGAAGGGGAACCACCAGCAG+AGG + chr4_1:21562354-21562373 None:intergenic 60.0%
CATCCTTCGTCCTCCGAAGG+AGG + chr4_1:21565067-21565086 None:intergenic 60.0%
GGTCCCATACGCTCCTCTGC+TGG - chr4_1:21562338-21562357 Msa0540020:three_prime_UTR 65.0%
CCCATACGCTCCTCTGCTGG+TGG - chr4_1:21562341-21562360 Msa0540020:three_prime_UTR 65.0%
TGACCGGTGGAAGCCCTTCG+TGG - chr4_1:21567141-21567160 Msa0540020:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 21562263 21567366 21562263 ID=Msa0540020;Name=Msa0540020
chr4_1 mRNA 21562263 21567366 21562263 ID=Msa0540020-mRNA-1;Parent=Msa0540020;Name=Msa0540020-mRNA-1;_AED=0.02;_eAED=0.02;_QI=34|0.81|0.66|1|0.81|0.75|12|454|669
chr4_1 exon 21562263 21562887 21562263 ID=Msa0540020-mRNA-1:exon:6136;Parent=Msa0540020-mRNA-1
chr4_1 exon 21563068 21563277 21563068 ID=Msa0540020-mRNA-1:exon:6135;Parent=Msa0540020-mRNA-1
chr4_1 exon 21563465 21563547 21563465 ID=Msa0540020-mRNA-1:exon:6134;Parent=Msa0540020-mRNA-1
chr4_1 exon 21563662 21563771 21563662 ID=Msa0540020-mRNA-1:exon:6133;Parent=Msa0540020-mRNA-1
chr4_1 exon 21563855 21563904 21563855 ID=Msa0540020-mRNA-1:exon:6132;Parent=Msa0540020-mRNA-1
chr4_1 exon 21563994 21564228 21563994 ID=Msa0540020-mRNA-1:exon:6131;Parent=Msa0540020-mRNA-1
chr4_1 exon 21564368 21564576 21564368 ID=Msa0540020-mRNA-1:exon:6130;Parent=Msa0540020-mRNA-1
chr4_1 exon 21564655 21564759 21564655 ID=Msa0540020-mRNA-1:exon:6129;Parent=Msa0540020-mRNA-1
chr4_1 exon 21565915 21565983 21565915 ID=Msa0540020-mRNA-1:exon:6128;Parent=Msa0540020-mRNA-1
chr4_1 exon 21566071 21566314 21566071 ID=Msa0540020-mRNA-1:exon:6127;Parent=Msa0540020-mRNA-1
chr4_1 exon 21566342 21566563 21566342 ID=Msa0540020-mRNA-1:exon:6126;Parent=Msa0540020-mRNA-1
chr4_1 exon 21567031 21567366 21567031 ID=Msa0540020-mRNA-1:exon:6125;Parent=Msa0540020-mRNA-1
chr4_1 five_prime_UTR 21567333 21567366 21567333 ID=Msa0540020-mRNA-1:five_prime_utr;Parent=Msa0540020-mRNA-1
chr4_1 CDS 21567031 21567332 21567031 ID=Msa0540020-mRNA-1:cds;Parent=Msa0540020-mRNA-1
chr4_1 CDS 21566342 21566563 21566342 ID=Msa0540020-mRNA-1:cds;Parent=Msa0540020-mRNA-1
chr4_1 CDS 21566071 21566314 21566071 ID=Msa0540020-mRNA-1:cds;Parent=Msa0540020-mRNA-1
chr4_1 CDS 21565915 21565983 21565915 ID=Msa0540020-mRNA-1:cds;Parent=Msa0540020-mRNA-1
chr4_1 CDS 21564655 21564759 21564655 ID=Msa0540020-mRNA-1:cds;Parent=Msa0540020-mRNA-1
chr4_1 CDS 21564368 21564576 21564368 ID=Msa0540020-mRNA-1:cds;Parent=Msa0540020-mRNA-1
chr4_1 CDS 21563994 21564228 21563994 ID=Msa0540020-mRNA-1:cds;Parent=Msa0540020-mRNA-1
chr4_1 CDS 21563855 21563904 21563855 ID=Msa0540020-mRNA-1:cds;Parent=Msa0540020-mRNA-1
chr4_1 CDS 21563662 21563771 21563662 ID=Msa0540020-mRNA-1:cds;Parent=Msa0540020-mRNA-1
chr4_1 CDS 21563465 21563547 21563465 ID=Msa0540020-mRNA-1:cds;Parent=Msa0540020-mRNA-1
chr4_1 CDS 21563068 21563277 21563068 ID=Msa0540020-mRNA-1:cds;Parent=Msa0540020-mRNA-1
chr4_1 CDS 21562717 21562887 21562717 ID=Msa0540020-mRNA-1:cds;Parent=Msa0540020-mRNA-1
chr4_1 three_prime_UTR 21562263 21562716 21562263 ID=Msa0540020-mRNA-1:three_prime_utr;Parent=Msa0540020-mRNA-1
Gene Sequence

>Msa0540020

ATGTTGATTAGCTTTCTTGTTCAGGGGCTTGGTGTAGAGTTGGTCCCATACGCTCCTCTGCTGGTGGTTCCCCTTCTACGATGCATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTTACCCATAGCTTTGCTGCTCTTGTACCATTACTTCCTTTAGCACGTGGTGTTCCACAACCAATTGGATTAGGGGAAGGTGTATCTAGAAATGCAGAAGATTTACATTTTCTGGAGCAGCTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTATCAACAGGAAGGCATAAATTGGTTAGCTTTTCTGAAACGTTTCAAACTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGAAATAGTTGAGCGTCGAACTCAAATCGGAAATGAGGATCTTCTGCCATCTTTAATTATTTGCCCGTCAACACTAGTTGGACACTGGGCCTTTGAGATAGAAAATCTTCAGTATGTTGGGTCTGCTCAGGATCGAATGCTTCTTCGAGATAGTTTTTGCAAGCATAATGTAATTATAACATCATATGATGTTGTCCGGAAAGATATTGATTATTTGGGACAGCTGCCGTGGAATTACTGCATTTTAGATGAAGGACATATAATAAAAAATGCCAAGTCTAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCAATACAGAATAACATAATGGACTTATGGTCCCTTTTTGATTTTTTGATGCCTGGATTTCTCGGAACAGATAGACAGTTCCAAAGCACATATGGAAAACCACTTTTAGCTTCAAGAGATCCAAAGTGCTCTGCTAAGGATGCTGAAGCTGGAGCACTTGCTATGGAAGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGGAGGACGAAGGATGAAGTCTTGTCCGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCACTGTACAACTTAAACTTTACGAACAGTTTTCTGGTTCTCGTGCAAAACAAGAGGTGTCATCTATTGTAACAACGAATGAGTCAGCTGCAGCAGAAGGAAGTAGCAGTTCTACTAAAGCTCATCCGTTGCTTGTACTTGGTGGGAAGATTCCAGATTCACTCTCTACCATCCTCTTGGAACTGTTTCCTGCTGGTTCTGATGTCATTTCAGAACTTCACAAACTCCATCACTCTCCAAAACTAGTTGCTCTTCATGAGATTCTCGAAGAGTGTGGAATTGGAGTTGATGCTTCAGGTACTGAGAATGCTGTTGGCATTGGGCAGCATAGGGTCTTGATATTTGCTCAACATAAGGCGTTCTTGGATATAATTGAAAAAGATTTGTTTCAGACTCACATGAAAAGTGTCACATATTTGCGGCTGGATGGATCAGTTGAGACCGAGAAGCGATTTGAAATTGTAAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTATTGCTTACGACTCATGTGGGCGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCTATGCGTGATCTTCAGGCTATGGATAGAGCGCACAGGTTAGGTCAGAAAAAAGTAGTTAATGTTCACCGTCTGATAATGCGTGGTACTCTGGAAGAGAAAGTTATGAGTCTACAACGGTTTAAAGTGTCAGTGGCTAATGCTGTCATTAATGCGGAAAATGCTAGTTTGAAAACAATGAATACAGATCAATTGCTTGATTTATTTGCATCAGCAGAAATCCCCAAGGGGTCTTCTGTTGGGAAGAGTTCAGAGGACAACAGTGATGGAGACCCTAAATTATTAGGCAGTGGAAAGGGAATGAAAGCAATACTTGGAGGATTGGAGGATCTATGGGACCAATCACAGTATACAGAGGAGTACAATTTGAGTCAATTTTTGGCGAAGCTTAATGGTTAA
Protein sequence

>Msa0540020

MLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGVPQPIGLGEGVSRNAEDLHFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEIVERRTQIGNEDLLPSLIICPSTLVGHWAFEIENLQYVGSAQDRMLLRDSFCKHNVIITSYDVVRKDIDYLGQLPWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQSTYGKPLLASRDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSTVQLKLYEQFSGSRAKQEVSSIVTTNESAAAEGSSSSTKAHPLLVLGGKIPDSLSTILLELFPAGSDVISELHKLHHSPKLVALHEILEECGIGVDASGTENAVGIGQHRVLIFAQHKAFLDIIEKDLFQTHMKSVTYLRLDGSVETEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLDLFASAEIPKGSSVGKSSEDNSDGDPKLLGSGKGMKAILGGLEDLWDQSQYTEEYNLSQFLAKLNG*