Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757090 | KEH27532.1 | 97.143 | 245 | 7 | 0 | 1 | 245 | 45 | 289 | 5.87e-176 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757090 | sp|Q9FV50|MAP1D_ARATH | 80.972 | 247 | 45 | 1 | 1 | 245 | 42 | 288 | 1.70e-144 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757090 | A0A072UD34 | 97.143 | 245 | 7 | 0 | 1 | 245 | 45 | 289 | 2.80e-176 | 496 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001040 | Msa0757090 | 0.804141 | 2.490240e-49 | -8.615850e-47 |
| Msa0022230 | Msa0757090 | 0.824173 | 9.318892e-54 | -8.615850e-47 |
| Msa0028900 | Msa0757090 | 0.820807 | 5.644104e-53 | -8.615850e-47 |
| Msa0032990 | Msa0757090 | 0.814987 | 1.164190e-51 | -8.615850e-47 |
| Msa0088670 | Msa0757090 | 0.824120 | 9.586022e-54 | -8.615850e-47 |
| Msa0094990 | Msa0757090 | 0.809756 | 1.616444e-50 | -8.615850e-47 |
| Msa0115950 | Msa0757090 | 0.811938 | 5.449627e-51 | -8.615850e-47 |
| Msa0116200 | Msa0757090 | 0.824177 | 9.296702e-54 | -8.615850e-47 |
| Msa0618260 | Msa0757090 | 0.837674 | 4.521364e-57 | -8.615850e-47 |
| Msa0625310 | Msa0757090 | 0.827573 | 1.451973e-54 | -8.615850e-47 |
| Msa0632040 | Msa0757090 | 0.812334 | 4.468031e-51 | -8.615850e-47 |
| Msa0653090 | Msa0757090 | 0.831809 | 1.352661e-55 | -8.615850e-47 |
| Msa0655150 | Msa0757090 | 0.814043 | 1.883682e-51 | -8.615850e-47 |
| Msa0668160 | Msa0757090 | 0.823547 | 1.306446e-53 | -8.615850e-47 |
| Msa0669160 | Msa0757090 | 0.840675 | 7.537039e-58 | -8.615850e-47 |
| Msa0687540 | Msa0757090 | 0.814076 | 1.852211e-51 | -8.615850e-47 |
| Msa0687620 | Msa0757090 | 0.818789 | 1.632033e-52 | -8.615850e-47 |
| Msa0692910 | Msa0757090 | 0.802735 | 4.871392e-49 | -8.615850e-47 |
| Msa0695800 | Msa0757090 | 0.811774 | 5.917701e-51 | -8.615850e-47 |
| Msa0703150 | Msa0757090 | 0.829471 | 5.054787e-55 | -8.615850e-47 |
| Msa0705710 | Msa0757090 | 0.850700 | 1.432816e-60 | -8.615850e-47 |
| Msa0708450 | Msa0757090 | 0.807218 | 5.627275e-50 | -8.615850e-47 |
| Msa0712100 | Msa0757090 | 0.805280 | 1.440612e-49 | -8.615850e-47 |
| Msa0715180 | Msa0757090 | 0.837955 | 3.828536e-57 | -8.615850e-47 |
| Msa0716430 | Msa0757090 | 0.800874 | 1.174462e-48 | -8.615850e-47 |
| Msa0716780 | Msa0757090 | 0.818569 | 1.831005e-52 | -8.615850e-47 |
| Msa0720850 | Msa0757090 | 0.819844 | 9.383125e-53 | -8.615850e-47 |
| Msa0749160 | Msa0757090 | 0.815961 | 7.068548e-52 | -8.615850e-47 |
| Msa0749900 | Msa0757090 | 0.831004 | 2.133486e-55 | -8.615850e-47 |
| Msa0757090 | Msa0762390 | 0.814163 | 1.772209e-51 | -8.615850e-47 |
| Msa0757090 | Msa0762470 | 0.820341 | 7.220044e-53 | -8.615850e-47 |
| Msa0757090 | Msa0772400 | 0.819645 | 1.041853e-52 | -8.615850e-47 |
| Msa0757090 | Msa0774560 | 0.882174 | 1.300006e-70 | -8.615850e-47 |
| Msa0757090 | Msa0793590 | 0.817801 | 2.730500e-52 | -8.615850e-47 |
| Msa0757090 | Msa0795850 | 0.815512 | 8.898370e-52 | -8.615850e-47 |
| Msa0757090 | Msa0795930 | 0.829231 | 5.778684e-55 | -8.615850e-47 |
| Msa0757090 | Msa0803220 | 0.824253 | 8.921287e-54 | -8.615850e-47 |
| Msa0757090 | Msa0803930 | 0.843759 | 1.149984e-58 | -8.615850e-47 |
| Msa0757090 | Msa0822800 | 0.807104 | 5.947938e-50 | -8.615850e-47 |
| Msa0757090 | Msa0829110 | 0.811188 | 7.931986e-51 | -8.615850e-47 |
| Msa0757090 | Msa0829430 | 0.823683 | 1.213694e-53 | -8.615850e-47 |
| Msa0757090 | Msa0830120 | 0.829420 | 5.199544e-55 | -8.615850e-47 |
| Msa0757090 | Msa0830450 | 0.827346 | 1.646211e-54 | -8.615850e-47 |
| Msa0757090 | Msa0836200 | 0.815463 | 9.128134e-52 | -8.615850e-47 |
| Msa0757090 | Msa0837590 | 0.816669 | 4.909048e-52 | -8.615850e-47 |
| Msa0757090 | Msa0840630 | 0.855560 | 5.813466e-62 | -8.615850e-47 |
| Msa0757090 | Msa0841980 | 0.856025 | 4.251885e-62 | -8.615850e-47 |
| Msa0757090 | Msa0844200 | 0.807792 | 4.250463e-50 | -8.615850e-47 |
| Msa0757090 | Msa0848780 | 0.802087 | 6.626777e-49 | -8.615850e-47 |
| Msa0757090 | Msa0849290 | 0.828953 | 6.750333e-55 | -8.615850e-47 |
| Msa0757090 | Msa0891670 | 0.809400 | 1.928309e-50 | -8.615850e-47 |
| Msa0757090 | Msa0928340 | 0.803686 | 3.097320e-49 | -8.615850e-47 |
| Msa0757090 | Msa0975280 | 0.830217 | 3.325790e-55 | -8.615850e-47 |
| Msa0757090 | Msa1008960 | 0.806999 | 6.260755e-50 | -8.615850e-47 |
| Msa0757090 | Msa1015020 | 0.805156 | 1.529121e-49 | -8.615850e-47 |
| Msa0757090 | Msa1081700 | 0.800035 | 1.740912e-48 | -8.615850e-47 |
| Msa0757090 | Msa1166020 | 0.801247 | 9.851307e-49 | -8.615850e-47 |
| Msa0757090 | Msa1182480 | 0.813794 | 2.136776e-51 | -8.615850e-47 |
| Msa0757090 | Msa1185030 | 0.839851 | 1.237484e-57 | -8.615850e-47 |
| Msa0757090 | Msa1186010 | 0.817553 | 3.106926e-52 | -8.615850e-47 |
| Msa0757090 | Msa1208250 | 0.844981 | 5.399388e-59 | -8.615850e-47 |
| Msa0757090 | Msa1212740 | 0.808741 | 2.668426e-50 | -8.615850e-47 |
| Msa0757090 | Msa1212960 | 0.829908 | 3.954786e-55 | -8.615850e-47 |
| Msa0757090 | Msa1213550 | 0.801294 | 9.636866e-49 | -8.615850e-47 |
| Msa0757090 | Msa1221540 | 0.808452 | 3.076459e-50 | -8.615850e-47 |
| Msa0757090 | Msa1258200 | 0.830652 | 2.603045e-55 | -8.615850e-47 |
| Msa0757090 | Msa1297720 | 0.814419 | 1.555908e-51 | -8.615850e-47 |
| Msa0757090 | Msa1303130 | 0.805239 | 1.469411e-49 | -8.615850e-47 |
| Msa0757090 | Msa1319720 | 0.803197 | 3.910025e-49 | -8.615850e-47 |
| Msa0757090 | Msa1331400 | 0.800978 | 1.118056e-48 | -8.615850e-47 |
| Msa0757090 | Msa1331610 | 0.815123 | 1.086301e-51 | -8.615850e-47 |
| Msa0757090 | Msa1336350 | 0.808045 | 3.756687e-50 | -8.615850e-47 |
| Msa0757090 | Msa1349490 | 0.822917 | 1.832203e-53 | -8.615850e-47 |
| Msa0757090 | Msa1356680 | 0.804167 | 2.459991e-49 | -8.615850e-47 |
| Msa0757090 | Msa1357380 | 0.842469 | 2.537969e-58 | -8.615850e-47 |
| Msa0757090 | Msa1366700 | 0.853577 | 2.179623e-61 | -8.615850e-47 |
| Msa0757090 | Msa1369220 | 0.808660 | 2.777164e-50 | -8.615850e-47 |
| Msa0757090 | Msa1379360 | 0.805477 | 1.309899e-49 | -8.615850e-47 |
| Msa0757090 | Msa1384980 | 0.817927 | 2.558177e-52 | -8.615850e-47 |
| Msa0757090 | Msa1396310 | 0.804039 | 2.614946e-49 | -8.615850e-47 |
| Msa0757090 | Msa1408190 | 0.826923 | 2.077801e-54 | -8.615850e-47 |
| Msa0757090 | Msa1412830 | 0.826539 | 2.566437e-54 | -8.615850e-47 |
| Msa0757090 | Msa1435990 | 0.802819 | 4.682493e-49 | -8.615850e-47 |
| Msa0757090 | Msa1437650 | 0.836085 | 1.150697e-56 | -8.615850e-47 |
| Msa0757090 | Msa1448990 | 0.823810 | 1.133555e-53 | -8.615850e-47 |
| Msa0757090 | Msa1450850 | 0.806966 | 6.363655e-50 | -8.615850e-47 |
| Msa0121080 | Msa0757090 | 0.808281 | 3.345175e-50 | -8.615850e-47 |
| Msa0127210 | Msa0757090 | 0.807039 | 6.141177e-50 | -8.615850e-47 |
| Msa0164630 | Msa0757090 | 0.839596 | 1.441515e-57 | -8.615850e-47 |
| Msa0173850 | Msa0757090 | 0.802844 | 4.626976e-49 | -8.615850e-47 |
| Msa0180540 | Msa0757090 | 0.836563 | 8.698057e-57 | -8.615850e-47 |
| Msa0206600 | Msa0757090 | 0.827086 | 1.900071e-54 | -8.615850e-47 |
| Msa0219550 | Msa0757090 | 0.821854 | 3.234753e-53 | -8.615850e-47 |
| Msa0367310 | Msa0757090 | 0.812543 | 4.022213e-51 | -8.615850e-47 |
| Msa0398850 | Msa0757090 | 0.835194 | 1.934325e-56 | -8.615850e-47 |
| Msa0404330 | Msa0757090 | 0.822995 | 1.757602e-53 | -8.615850e-47 |
| Msa0404360 | Msa0757090 | 0.807683 | 4.484023e-50 | -8.615850e-47 |
| Msa0404440 | Msa0757090 | 0.808099 | 3.657134e-50 | -8.615850e-47 |
| Msa0423590 | Msa0757090 | 0.809844 | 1.547747e-50 | -8.615850e-47 |
| Msa0438440 | Msa0757090 | 0.821467 | 3.975354e-53 | -8.615850e-47 |
| Msa0459920 | Msa0757090 | 0.823280 | 1.507912e-53 | -8.615850e-47 |
| Msa0463580 | Msa0757090 | 0.807237 | 5.576777e-50 | -8.615850e-47 |
| Msa0471890 | Msa0757090 | 0.800774 | 1.231056e-48 | -8.615850e-47 |
| Msa0476820 | Msa0757090 | 0.816138 | 6.452356e-52 | -8.615850e-47 |
| Msa0246470 | Msa0757090 | 0.801385 | 9.231847e-49 | -8.615850e-47 |
| Msa0251140 | Msa0757090 | 0.815918 | 7.227414e-52 | -8.615850e-47 |
| Msa0274890 | Msa0757090 | 0.806841 | 6.763089e-50 | -8.615850e-47 |
| Msa0281310 | Msa0757090 | 0.839216 | 1.808936e-57 | -8.615850e-47 |
| Msa0304020 | Msa0757090 | 0.802189 | 6.313403e-49 | -8.615850e-47 |
| Msa0315010 | Msa0757090 | 0.804588 | 2.009956e-49 | -8.615850e-47 |
| Msa0321100 | Msa0757090 | 0.825917 | 3.609000e-54 | -8.615850e-47 |
| Msa0347600 | Msa0757090 | 0.825942 | 3.560532e-54 | -8.615850e-47 |
| Msa0353900 | Msa0757090 | 0.823737 | 1.179304e-53 | -8.615850e-47 |
| Msa0361500 | Msa0757090 | 0.815376 | 9.542192e-52 | -8.615850e-47 |
| Msa0510410 | Msa0757090 | 0.819705 | 1.009574e-52 | -8.615850e-47 |
| Msa0512430 | Msa0757090 | 0.805070 | 1.594056e-49 | -8.615850e-47 |
| Msa0530250 | Msa0757090 | 0.812108 | 5.005452e-51 | -8.615850e-47 |
| Msa0539400 | Msa0757090 | 0.843382 | 1.450339e-58 | -8.615850e-47 |
| Msa0544710 | Msa0757090 | 0.834663 | 2.631123e-56 | -8.615850e-47 |
| Msa0557770 | Msa0757090 | 0.826892 | 2.114218e-54 | -8.615850e-47 |
| Msa0559280 | Msa0757090 | 0.820134 | 8.050858e-53 | -8.615850e-47 |
| Msa0561750 | Msa0757090 | 0.801858 | 7.383539e-49 | -8.615850e-47 |
| Msa0561760 | Msa0757090 | 0.810703 | 1.010151e-50 | -8.615850e-47 |
| Msa0562680 | Msa0757090 | 0.829147 | 6.057923e-55 | -8.615850e-47 |
| Msa0565530 | Msa0757090 | 0.866316 | 3.117638e-65 | -8.615850e-47 |
| Msa0568120 | Msa0757090 | 0.807071 | 6.046974e-50 | -8.615850e-47 |
| Msa0573970 | Msa0757090 | 0.826125 | 3.221072e-54 | -8.615850e-47 |
| Msa0580360 | Msa0757090 | 0.801601 | 8.336664e-49 | -8.615850e-47 |
| Msa0580430 | Msa0757090 | 0.812890 | 3.376737e-51 | -8.615850e-47 |
| Msa0581190 | Msa0757090 | 0.800802 | 1.214769e-48 | -8.615850e-47 |
| Msa0587070 | Msa0757090 | 0.829908 | 3.955567e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757090 | MtrunA17_Chr5g0402401 | 97.143 | 245 | 7 | 0 | 1 | 245 | 45 | 289 | 7.57e-180 | 497 |
| Msa0757090 | MtrunA17_Chr5g0422531 | 69.124 | 217 | 67 | 0 | 29 | 245 | 78 | 294 | 1.26e-109 | 320 |
| Msa0757090 | MtrunA17_Chr4g0011731 | 49.545 | 220 | 106 | 1 | 29 | 243 | 100 | 319 | 4.18e-71 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757090 | AT4G37040.1 | 80.972 | 247 | 45 | 1 | 1 | 245 | 42 | 288 | 1.73e-145 | 410 |
| Msa0757090 | AT1G13270.1 | 62.771 | 231 | 83 | 1 | 18 | 245 | 77 | 307 | 6.13e-103 | 303 |
| Msa0757090 | AT3G25740.1 | 58.159 | 239 | 95 | 2 | 11 | 245 | 42 | 279 | 6.99e-94 | 279 |
| Msa0757090 | AT1G13270.2 | 62.944 | 197 | 70 | 1 | 18 | 211 | 77 | 273 | 3.18e-84 | 253 |
| Msa0757090 | AT2G45240.2 | 46.544 | 217 | 111 | 1 | 34 | 245 | 106 | 322 | 4.24e-66 | 208 |
| Msa0757090 | AT2G45240.1 | 46.759 | 216 | 110 | 1 | 34 | 244 | 106 | 321 | 2.39e-65 | 208 |
| Msa0757090 | AT3G25740.2 | 55.102 | 147 | 62 | 1 | 11 | 153 | 42 | 188 | 4.08e-45 | 152 |
Find 56 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTATCTAGGCATTCTT+TGG | 0.262562 | 5_2:+11805441 | None:intergenic |
| ACAGATGTGCATACACTCTT+TGG | 0.287821 | 5_2:+11806965 | None:intergenic |
| AGTGATCATGCAGATAAATA+TGG | 0.316494 | 5_2:-11805253 | Msa0757090:CDS |
| CCAATCTCTTATTCAATAGA+AGG | 0.322925 | 5_2:-11807994 | Msa0757090:CDS |
| ATTGAATGTATGAGAGCTTC+TGG | 0.324353 | 5_2:-11807818 | Msa0757090:CDS |
| CACCATTATCAATTATCATT+TGG | 0.331640 | 5_2:+11807020 | None:intergenic |
| TTACTGAAGTGCAGAATAAC+TGG | 0.332632 | 5_2:+11805172 | None:intergenic |
| TTCTGGAAGGCTTGCTGCGC+AGG | 0.333681 | 5_2:-11807801 | Msa0757090:CDS |
| CGACGTGGAGAAACAATTCC+AGG | 0.340529 | 5_2:+11807935 | None:intergenic |
| GGAGTGGAATACAAGAAAAT+TGG | 0.358013 | 5_2:-11805400 | Msa0757090:CDS |
| TGGAGGCTTTGTTATGTCCT+TGG | 0.383263 | 5_2:+11807904 | None:intergenic |
| TACCCGTCTCCTCTTGGTTA+TGG | 0.385751 | 5_2:-11806995 | Msa0757090:CDS |
| CACCAAATGATAATTGATAA+TGG | 0.386505 | 5_2:-11807022 | Msa0757090:CDS |
| CCTTCTATTGAATAAGAGAT+TGG | 0.388798 | 5_2:+11807994 | None:intergenic |
| ACAACTTACATTTAGATAAA+CGG | 0.389802 | 5_2:+11806791 | None:intergenic |
| GGAGGCTTTGTTATGTCCTT+GGG | 0.396406 | 5_2:+11807905 | None:intergenic |
| GTGCAACAGTTTGTTGGCCA+TGG | 0.402876 | 5_2:-11805220 | Msa0757090:CDS |
| ATATCGATATTGCTTTATCT+AGG | 0.407550 | 5_2:+11805431 | None:intergenic |
| ACCTCAAGCGAACGTGAATC+TGG | 0.417194 | 5_2:+11806917 | None:intergenic |
| CATGCAGATAAATATGGATA+TGG | 0.420071 | 5_2:-11805247 | Msa0757090:CDS |
| TGCAACAGTTTGTTGGCCAT+GGG | 0.424319 | 5_2:-11805219 | Msa0757090:CDS |
| ACCTGAAGTACATGATGAAA+AGG | 0.457990 | 5_2:-11807843 | Msa0757090:CDS |
| GAACATCTTACTGAATTGTT+CGG | 0.461558 | 5_2:+11805377 | None:intergenic |
| CAGTTTGTTGGCCATGGGGT+TGG | 0.478716 | 5_2:-11805214 | Msa0757090:CDS |
| CCTGAAGTACATGATGAAAA+GGG | 0.481951 | 5_2:-11807842 | Msa0757090:CDS |
| CGCAATCCCTGGCGGAACCA+TGG | 0.485545 | 5_2:+11807871 | None:intergenic |
| GGTGCGTACCCGTCTCCTCT+TGG | 0.492621 | 5_2:-11807001 | Msa0757090:CDS |
| GCGCAGGTTCTTCAGTATGC+TGG | 0.495204 | 5_2:-11807785 | Msa0757090:CDS |
| GTAAAATCCATGGTTCCGCC+AGG | 0.509922 | 5_2:-11807878 | Msa0757090:CDS |
| CCGTCTCCTCTTGGTTATGG+TGG | 0.510232 | 5_2:-11806992 | Msa0757090:CDS |
| GGTGTTGTGCAACAGTTTGT+TGG | 0.514303 | 5_2:-11805226 | Msa0757090:CDS |
| ATTTCATCAGTCGTTATGCC+TGG | 0.524254 | 5_2:+11807058 | None:intergenic |
| ATCGATATGTGCACCTGGAG+TGG | 0.530627 | 5_2:-11805416 | Msa0757090:CDS |
| TCAGGTCCACTCGCAATCCC+TGG | 0.530751 | 5_2:+11807860 | None:intergenic |
| AATCGTAAACGCTTGAGACC+TGG | 0.531063 | 5_2:-11807953 | Msa0757090:CDS |
| ATAGAAACGCACCTTGACTA+AGG | 0.539069 | 5_2:+11807760 | None:intergenic |
| TATGAATTGTAGGGTTATCA+TGG | 0.548429 | 5_2:-11806373 | Msa0757090:intron |
| AGGTCTCAAGCGTTTACGAT+TGG | 0.553505 | 5_2:+11807955 | None:intergenic |
| GCCTCCATATGTAAAATCCA+TGG | 0.558800 | 5_2:-11807888 | Msa0757090:CDS |
| CCACCATAACCAAGAGGAGA+CGG | 0.567121 | 5_2:+11806992 | None:intergenic |
| ACCAGATTCACGTTCGCTTG+AGG | 0.570704 | 5_2:-11806918 | Msa0757090:intron |
| CACCATAACCAAGAGGAGAC+GGG | 0.579998 | 5_2:+11806993 | None:intergenic |
| TTGCGGGGATGTTGATGATG+AGG | 0.585529 | 5_2:-11806329 | Msa0757090:CDS |
| AACGTGAATCTGGTATTCCA+TGG | 0.591774 | 5_2:+11806927 | None:intergenic |
| GTTCCGCCAGGGATTGCGAG+TGG | 0.597034 | 5_2:-11807866 | Msa0757090:CDS |
| GTATGCTGGCACCTTAGTCA+AGG | 0.603231 | 5_2:-11807771 | Msa0757090:intron |
| GTGAATGAATGCATTTGCCA+TGG | 0.609251 | 5_2:-11806944 | Msa0757090:CDS |
| AATGTATGAGAGCTTCTGGA+AGG | 0.615258 | 5_2:-11807814 | Msa0757090:CDS |
| TAAAATCCATGGTTCCGCCA+GGG | 0.622525 | 5_2:-11807877 | Msa0757090:CDS |
| GCAATATCGATATGTGCACC+TGG | 0.626501 | 5_2:-11805421 | Msa0757090:CDS |
| TCCACGTCGAAAAGTTCCCA+AGG | 0.628745 | 5_2:-11807921 | Msa0757090:CDS |
| CTGAAGTACATGATGAAAAG+GGG | 0.629440 | 5_2:-11807841 | Msa0757090:CDS |
| GCAACAGTTTGTTGGCCATG+GGG | 0.649120 | 5_2:-11805218 | Msa0757090:CDS |
| GTTAAGCTAGAAAGTGATCG+AGG | 0.686049 | 5_2:+11808016 | None:intergenic |
| GGTCCACTCGCAATCCCTGG+CGG | 0.706269 | 5_2:+11807863 | None:intergenic |
| GGAAAACCACCATAACCAAG+AGG | 0.708028 | 5_2:+11806986 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTAAAATTATATATCTT+GGG | - | chr5_2:11806330-11806349 | Msa0757090:CDS | 10.0% |
| !!! | TAAGTTGTATAATTTTTTTT+TGG | - | chr5_2:11806429-11806448 | Msa0757090:intron | 10.0% |
| !!! | ATTGGTAAAAATATTAATTT+TGG | - | chr5_2:11807076-11807095 | Msa0757090:intron | 10.0% |
| !! | CAAATAAAATTCATTATATT+TGG | + | chr5_2:11807566-11807585 | None:intergenic | 10.0% |
| !! | AATTAAATTGTTGAAATGAT+TGG | - | chr5_2:11806064-11806083 | Msa0757090:intron | 15.0% |
| !! | GATTGTAAAATTATATATCT+TGG | - | chr5_2:11806329-11806348 | Msa0757090:CDS | 15.0% |
| !!! | TATTTTGTTCTTTTAAAACA+TGG | - | chr5_2:11806649-11806668 | Msa0757090:intron | 15.0% |
| !! | ATTCCAAAACATATAAAAAT+GGG | + | chr5_2:11806756-11806775 | None:intergenic | 15.0% |
| !! | AATTCCAAAACATATAAAAA+TGG | + | chr5_2:11806757-11806776 | None:intergenic | 15.0% |
| !!! | ATTTATGGTTTTATATTTTC+TGG | - | chr5_2:11807472-11807491 | Msa0757090:intron | 15.0% |
| !!! | TATTTTAATTATGATTGCAG+CGG | - | chr5_2:11805697-11805716 | Msa0757090:intron | 20.0% |
| !!! | TTATTTTTACTAGCTTATAG+TGG | + | chr5_2:11805793-11805812 | None:intergenic | 20.0% |
| !! | ACAACTTACATTTAGATAAA+CGG | + | chr5_2:11806417-11806436 | None:intergenic | 20.0% |
| !!! | TGTATAATTTTTTTTTGGCA+TGG | - | chr5_2:11806434-11806453 | Msa0757090:intron | 20.0% |
| !!! | TTAATTCATCTAGCTTATTT+TGG | - | chr5_2:11806697-11806716 | Msa0757090:intron | 20.0% |
| !! | AAATGCAGAATTAAATAACA+GGG | + | chr5_2:11806986-11807005 | None:intergenic | 20.0% |
| !! | AAAATGCAGAATTAAATAAC+AGG | + | chr5_2:11806987-11807006 | None:intergenic | 20.0% |
| !!! | TTTACCAATATTTTGAAAAC+TGG | + | chr5_2:11807065-11807084 | None:intergenic | 20.0% |
| !!! | ATTTTGGATTTTAGATTACT+TGG | - | chr5_2:11807092-11807111 | Msa0757090:intron | 20.0% |
| !!! | ATATCTGAAATTCAAAAACT+AGG | + | chr5_2:11807215-11807234 | None:intergenic | 20.0% |
| !! | TAGATATTTATTATCTTAGC+AGG | - | chr5_2:11807322-11807341 | Msa0757090:intron | 20.0% |
| !! | AGATATTTATTATCTTAGCA+GGG | - | chr5_2:11807323-11807342 | Msa0757090:intron | 20.0% |
| !!! | TTTTATATTTTCTGGTCAAT+AGG | - | chr5_2:11807480-11807499 | Msa0757090:intron | 20.0% |
| !! | AACAATTAGAATAAGTTGTA+AGG | + | chr5_2:11807596-11807615 | None:intergenic | 20.0% |
| !!! | CAACTTATTCTAATTGTTTT+TGG | - | chr5_2:11807598-11807617 | Msa0757090:intron | 20.0% |
| !! | TCATATAAACACAAAACAAA+TGG | + | chr5_2:11807708-11807727 | None:intergenic | 20.0% |
| ! | CTATAAACTATATCTGCTAT+CGG | + | chr5_2:11805537-11805556 | None:intergenic | 25.0% |
| ! | TATTAACTAACAAACATACG+AGG | - | chr5_2:11805958-11805977 | Msa0757090:intron | 25.0% |
| ! | CACCAAATGATAATTGATAA+TGG | - | chr5_2:11806183-11806202 | Msa0757090:intron | 25.0% |
| ! | CACCATTATCAATTATCATT+TGG | + | chr5_2:11806188-11806207 | None:intergenic | 25.0% |
| !! | TTTACAATCTAAGAGTTTTC+TGG | + | chr5_2:11806318-11806337 | None:intergenic | 25.0% |
| !!! | TGACATTTTCTTTTATTTGC+AGG | - | chr5_2:11806364-11806383 | Msa0757090:CDS | 25.0% |
| !!! | ATTTTCTTTTATTTGCAGGA+TGG | - | chr5_2:11806368-11806387 | Msa0757090:intron | 25.0% |
| !!! | CTTATTTTTGCTTTTTGTTC+AGG | - | chr5_2:11806464-11806483 | Msa0757090:intron | 25.0% |
| !!! | TTGCCCATTTTTATATGTTT+TGG | - | chr5_2:11806750-11806769 | Msa0757090:intron | 25.0% |
| ! | ATAAAACTTGTGCTTTGATT+TGG | - | chr5_2:11806793-11806812 | Msa0757090:intron | 25.0% |
| ! | AACATATGGATATGAATTGT+AGG | - | chr5_2:11806822-11806841 | Msa0757090:CDS | 25.0% |
| ! | ACATATGGATATGAATTGTA+GGG | - | chr5_2:11806823-11806842 | Msa0757090:intron | 25.0% |
| !!! | GTTTAATGCACTTTTTGTAA+TGG | - | chr5_2:11807126-11807145 | Msa0757090:intron | 25.0% |
| ! | TTTCATATACTCATTCCAAA+GGG | + | chr5_2:11807266-11807285 | None:intergenic | 25.0% |
| !! | TTTTCATATACTCATTCCAA+AGG | + | chr5_2:11807267-11807286 | None:intergenic | 25.0% |
| ! | CATTCAAAACTTAATACCAT+AGG | + | chr5_2:11807413-11807432 | None:intergenic | 25.0% |
| !!! | ATTAAGTTTTGAATGAGACA+CGG | - | chr5_2:11807418-11807437 | Msa0757090:intron | 25.0% |
| ! | AAACCATAAATGAATACCAA+GGG | + | chr5_2:11807463-11807482 | None:intergenic | 25.0% |
| ! | AAAACCATAAATGAATACCA+AGG | + | chr5_2:11807464-11807483 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTGTTTATATGAG+TGG | - | chr5_2:11807709-11807728 | Msa0757090:intron | 25.0% |
| !! | TGTTTTGTGTTTATATGAGT+GGG | - | chr5_2:11807710-11807729 | Msa0757090:intron | 25.0% |
| ! | ATATCGATATTGCTTTATCT+AGG | + | chr5_2:11807777-11807796 | None:intergenic | 25.0% |
| ! | TTCTGAATTTATGTGGAATA+AGG | + | chr5_2:11807883-11807902 | None:intergenic | 25.0% |
| CCTTCTATTGAATAAGAGAT+TGG | + | chr5_2:11805214-11805233 | None:intergenic | 30.0% | |
| CCAATCTCTTATTCAATAGA+AGG | - | chr5_2:11805211-11805230 | Msa0757090:CDS | 30.0% | |
| ! | TAAACTAGCTTATCTGCTAT+CGG | + | chr5_2:11805560-11805579 | None:intergenic | 30.0% |
| GTGATTGAATTTGTAGTGTT+TGG | - | chr5_2:11805602-11805621 | Msa0757090:intron | 30.0% | |
| ATGACTAAAAAAGACCCATT+TGG | + | chr5_2:11805845-11805864 | None:intergenic | 30.0% | |
| ! | ACATACGAGGTTGTTATTAT+TGG | - | chr5_2:11805971-11805990 | Msa0757090:intron | 30.0% |
| ! | GTTGTTATTATTGGTTAGTG+CGG | - | chr5_2:11805980-11805999 | Msa0757090:intron | 30.0% |
| ! | TTGTTATTATTGGTTAGTGC+GGG | - | chr5_2:11805981-11806000 | Msa0757090:intron | 30.0% |
| !!! | TAATTTTTTTTTGGCATGGC+AGG | - | chr5_2:11806438-11806457 | Msa0757090:intron | 30.0% |
| !!! | AATTTTTTTTTGGCATGGCA+GGG | - | chr5_2:11806439-11806458 | Msa0757090:intron | 30.0% |
| !!! | ATTTTTGCTTTTTGTTCAGG+TGG | - | chr5_2:11806467-11806486 | Msa0757090:intron | 30.0% |
| !!! | TTTTTGCTTTTTGTTCAGGT+GGG | - | chr5_2:11806468-11806487 | Msa0757090:intron | 30.0% |
| !! | TGATTTGGTGATTGAACATA+TGG | - | chr5_2:11806808-11806827 | Msa0757090:CDS | 30.0% |
| TATGAATTGTAGGGTTATCA+TGG | - | chr5_2:11806832-11806851 | Msa0757090:intron | 30.0% | |
| ! | CAGTCCAGTTTTCAAAATAT+TGG | - | chr5_2:11807058-11807077 | Msa0757090:CDS | 30.0% |
| GAATTCATTATGAAAACCTG+AGG | - | chr5_2:11807148-11807167 | Msa0757090:intron | 30.0% | |
| TTCAGATATTGTGCTAACAA+AGG | - | chr5_2:11807226-11807245 | Msa0757090:intron | 30.0% | |
| ! | GAATGCTTTTATATTCCCTT+TGG | - | chr5_2:11807248-11807267 | Msa0757090:intron | 30.0% |
| AGCTACTCTACTGTATTATA+TGG | - | chr5_2:11807294-11807313 | Msa0757090:intron | 30.0% | |
| AATACCATAGGATATTCTAC+TGG | + | chr5_2:11807401-11807420 | None:intergenic | 30.0% | |
| TATCCCTTGGTATTCATTTA+TGG | - | chr5_2:11807457-11807476 | Msa0757090:intron | 30.0% | |
| ATACAATTTCCAGGAATAAG+TGG | + | chr5_2:11807513-11807532 | None:intergenic | 30.0% | |
| TTATGGGATATACAATTTCC+AGG | + | chr5_2:11807522-11807541 | None:intergenic | 30.0% | |
| TTTGGTAAAACGTTAGTCAA+CGG | + | chr5_2:11807548-11807567 | None:intergenic | 30.0% | |
| ! | GTTTTGTGTTTATATGAGTG+GGG | - | chr5_2:11807711-11807730 | Msa0757090:intron | 30.0% |
| GACCTGTATCAATCAAATAA+GGG | + | chr5_2:11807743-11807762 | None:intergenic | 30.0% | |
| TGACCTGTATCAATCAAATA+AGG | + | chr5_2:11807744-11807763 | None:intergenic | 30.0% | |
| GAACATCTTACTGAATTGTT+CGG | + | chr5_2:11807831-11807850 | None:intergenic | 30.0% | |
| ! | AGAGGTTTTCTGAATTTATG+TGG | + | chr5_2:11807890-11807909 | None:intergenic | 30.0% |
| ACATAAATTCAGAAAACCTC+TGG | - | chr5_2:11807889-11807908 | Msa0757090:CDS | 30.0% | |
| AGTGATCATGCAGATAAATA+TGG | - | chr5_2:11807952-11807971 | Msa0757090:CDS | 30.0% | |
| CATGCAGATAAATATGGATA+TGG | - | chr5_2:11807958-11807977 | Msa0757090:CDS | 30.0% | |
| ! | ACCATGGATTTTACATATGG+AGG | + | chr5_2:11805321-11805340 | None:intergenic | 35.0% |
| ! | GGAACCATGGATTTTACATA+TGG | + | chr5_2:11805324-11805343 | None:intergenic | 35.0% |
| ACCTGAAGTACATGATGAAA+AGG | - | chr5_2:11805362-11805381 | Msa0757090:intron | 35.0% | |
| CCTGAAGTACATGATGAAAA+GGG | - | chr5_2:11805363-11805382 | Msa0757090:intron | 35.0% | |
| CTGAAGTACATGATGAAAAG+GGG | - | chr5_2:11805364-11805383 | Msa0757090:intron | 35.0% | |
| ATTGAATGTATGAGAGCTTC+TGG | - | chr5_2:11805387-11805406 | Msa0757090:intron | 35.0% | |
| ATTCAATCACCTAGCTTATC+TGG | + | chr5_2:11805592-11805611 | None:intergenic | 35.0% | |
| TTACAATCCTAAGACACGTA+GGG | + | chr5_2:11805928-11805947 | None:intergenic | 35.0% | |
| ATTACAATCCTAAGACACGT+AGG | + | chr5_2:11805929-11805948 | None:intergenic | 35.0% | |
| ! | CAATCTAAGAGTTTTCTGGA+AGG | + | chr5_2:11806314-11806333 | None:intergenic | 35.0% |
| !!! | TTTTGCTTTTTGTTCAGGTG+GGG | - | chr5_2:11806469-11806488 | Msa0757090:intron | 35.0% |
| CAACAATATAGCACAAGAAG+AGG | + | chr5_2:11806584-11806603 | None:intergenic | 35.0% | |
| CTCTTCTTGTGCTATATTGT+TGG | - | chr5_2:11806582-11806601 | Msa0757090:intron | 35.0% | |
| TTCTTGTGCTATATTGTTGG+AGG | - | chr5_2:11806585-11806604 | Msa0757090:intron | 35.0% | |
| TCTTGTGCTATATTGTTGGA+GGG | - | chr5_2:11806586-11806605 | Msa0757090:intron | 35.0% | |
| ! | ACATCGACAACTTTCTTTTG+CGG | - | chr5_2:11806859-11806878 | Msa0757090:intron | 35.0% |
| TGAGGCTAAAAAACTAGTTC+AGG | - | chr5_2:11806894-11806913 | Msa0757090:intron | 35.0% | |
| ! | GGATTTTAGATTACTTGGTC+TGG | - | chr5_2:11807097-11807116 | Msa0757090:intron | 35.0% |
| ! | GATAGCTTTACAGTTTACGT+TGG | + | chr5_2:11807379-11807398 | None:intergenic | 35.0% |
| CTATCCAGTAGAATATCCTA+TGG | - | chr5_2:11807394-11807413 | Msa0757090:intron | 35.0% | |
| GTATAAGGAAGAATATCCCT+TGG | - | chr5_2:11807444-11807463 | Msa0757090:intron | 35.0% | |
| !! | CGTTAGTCAACGGATTTTAT+GGG | + | chr5_2:11807538-11807557 | None:intergenic | 35.0% |
| !! | ACGTTAGTCAACGGATTTTA+TGG | + | chr5_2:11807539-11807558 | None:intergenic | 35.0% |
| TGGATGTTGAGATACTATTC+TGG | - | chr5_2:11807618-11807637 | Msa0757090:intron | 35.0% | |
| TAAACACAAAACAAATGGCG+AGG | + | chr5_2:11807703-11807722 | None:intergenic | 35.0% | |
| ! | CTCCCTTATTTGATTGATAC+AGG | - | chr5_2:11807738-11807757 | Msa0757090:intron | 35.0% |
| TGCTTTATCTAGGCATTCTT+TGG | + | chr5_2:11807767-11807786 | None:intergenic | 35.0% | |
| ! | ATTTTCTTGTATTCCACTCC+AGG | + | chr5_2:11807805-11807824 | None:intergenic | 35.0% |
| GGAGTGGAATACAAGAAAAT+TGG | - | chr5_2:11807805-11807824 | Msa0757090:CDS | 35.0% | |
| GAATAAGGAAATGCAGGAAT+GGG | + | chr5_2:11807868-11807887 | None:intergenic | 35.0% | |
| TATGTGGAATAAGGAAATGC+AGG | + | chr5_2:11807874-11807893 | None:intergenic | 35.0% | |
| TGATGAATCATATAGTCCAG+AGG | + | chr5_2:11807908-11807927 | None:intergenic | 35.0% | |
| TTACTGAAGTGCAGAATAAC+TGG | + | chr5_2:11808036-11808055 | None:intergenic | 35.0% | |
| GTTAAGCTAGAAAGTGATCG+AGG | + | chr5_2:11805192-11805211 | None:intergenic | 40.0% | |
| GCCTCCATATGTAAAATCCA+TGG | - | chr5_2:11805317-11805336 | Msa0757090:intron | 40.0% | |
| ! | CCCTTTTCATCATGTACTTC+AGG | + | chr5_2:11805366-11805385 | None:intergenic | 40.0% |
| AATGTATGAGAGCTTCTGGA+AGG | - | chr5_2:11805391-11805410 | Msa0757090:CDS | 40.0% | |
| ATAGAAACGCACCTTGACTA+AGG | + | chr5_2:11805448-11805467 | None:intergenic | 40.0% | |
| TATATCATCCTTGAAGCGAG+TGG | + | chr5_2:11805483-11805502 | None:intergenic | 40.0% | |
| TAGCTGATACCAGATAAGCT+AGG | - | chr5_2:11805580-11805599 | Msa0757090:intron | 40.0% | |
| AAATAACCTATAAGCTCGCG+AGG | - | chr5_2:11805807-11805826 | Msa0757090:intron | 40.0% | |
| AGGAAGTAACGGTTACCAAA+TGG | - | chr5_2:11805827-11805846 | Msa0757090:intron | 40.0% | |
| GGAAGTAACGGTTACCAAAT+GGG | - | chr5_2:11805828-11805847 | Msa0757090:intron | 40.0% | |
| TAAGACACGTAGGGTGTATT+TGG | + | chr5_2:11805919-11805938 | None:intergenic | 40.0% | |
| AAATACACCCTACGTGTCTT+AGG | - | chr5_2:11805918-11805937 | Msa0757090:intron | 40.0% | |
| ! | TTATTGGTTAGTGCGGGAAA+AGG | - | chr5_2:11805987-11806006 | Msa0757090:intron | 40.0% |
| ! | TTTAACTTCTGTTGACAGCC+AGG | - | chr5_2:11806129-11806148 | Msa0757090:intron | 40.0% |
| ATTTCATCAGTCGTTATGCC+TGG | + | chr5_2:11806150-11806169 | None:intergenic | 40.0% | |
| ACAGATGTGCATACACTCTT+TGG | + | chr5_2:11806243-11806262 | None:intergenic | 40.0% | |
| GTGAATGAATGCATTTGCCA+TGG | - | chr5_2:11806261-11806280 | Msa0757090:intron | 40.0% | |
| AACGTGAATCTGGTATTCCA+TGG | + | chr5_2:11806281-11806300 | None:intergenic | 40.0% | |
| CTTGTGCTATATTGTTGGAG+GGG | - | chr5_2:11806587-11806606 | Msa0757090:intron | 40.0% | |
| ! | CATCGACAACTTTCTTTTGC+GGG | - | chr5_2:11806860-11806879 | Msa0757090:intron | 40.0% |
| ! | ATCGACAACTTTCTTTTGCG+GGG | - | chr5_2:11806861-11806880 | Msa0757090:intron | 40.0% |
| TCGTTGGCATGAAGATAAAC+TGG | + | chr5_2:11806922-11806941 | None:intergenic | 40.0% | |
| GTTTATCTTCATGCCAACGA+TGG | - | chr5_2:11806922-11806941 | Msa0757090:CDS | 40.0% | |
| TGAACCGTGAACTAGTTCAA+TGG | - | chr5_2:11807034-11807053 | Msa0757090:CDS | 40.0% | |
| CTGACCATTGAACTAGTTCA+CGG | + | chr5_2:11807041-11807060 | None:intergenic | 40.0% | |
| AACCTGAGGAATTACAGAGA+AGG | - | chr5_2:11807162-11807181 | Msa0757090:intron | 40.0% | |
| ACCTGAGGAATTACAGAGAA+GGG | - | chr5_2:11807163-11807182 | Msa0757090:intron | 40.0% | |
| GGGTCTAAATCCTTAGAGTA+AGG | - | chr5_2:11807184-11807203 | Msa0757090:intron | 40.0% | |
| CTAGGTAAGTCCTTACTCTA+AGG | + | chr5_2:11807197-11807216 | None:intergenic | 40.0% | |
| AATGAGACACGGAGTGTATA+AGG | - | chr5_2:11807429-11807448 | Msa0757090:intron | 40.0% | |
| GGAATGGGAGAACAAATGAT+AGG | + | chr5_2:11807853-11807872 | None:intergenic | 40.0% | |
| GGAATAAGGAAATGCAGGAA+TGG | + | chr5_2:11807869-11807888 | None:intergenic | 40.0% | |
| AGGTCTCAAGCGTTTACGAT+TGG | + | chr5_2:11805253-11805272 | None:intergenic | 45.0% | |
| AATCGTAAACGCTTGAGACC+TGG | - | chr5_2:11805252-11805271 | Msa0757090:CDS | 45.0% | |
| !! | GGAGGCTTTGTTATGTCCTT+GGG | + | chr5_2:11805303-11805322 | None:intergenic | 45.0% |
| !! | TGGAGGCTTTGTTATGTCCT+TGG | + | chr5_2:11805304-11805323 | None:intergenic | 45.0% |
| TAAAATCCATGGTTCCGCCA+GGG | - | chr5_2:11805328-11805347 | Msa0757090:intron | 45.0% | |
| TTACTTCCTCGCGAGCTTAT+AGG | + | chr5_2:11805816-11805835 | None:intergenic | 45.0% | |
| ATAAGCTCGCGAGGAAGTAA+CGG | - | chr5_2:11805816-11805835 | Msa0757090:intron | 45.0% | |
| GGAAAACCACCATAACCAAG+AGG | + | chr5_2:11806222-11806241 | None:intergenic | 45.0% | |
| ACTACTGTACTACTGAGACG+AGG | + | chr5_2:11806535-11806554 | None:intergenic | 45.0% | |
| ! | GGACATAAGCGTTGTAAGCA+GGG | + | chr5_2:11806563-11806582 | None:intergenic | 45.0% |
| ! | AGGACATAAGCGTTGTAAGC+AGG | + | chr5_2:11806564-11806583 | None:intergenic | 45.0% |
| TGCTATATTGTTGGAGGGGA+CGG | - | chr5_2:11806591-11806610 | Msa0757090:intron | 45.0% | |
| AATAACAGGGCACAGACGTA+TGG | + | chr5_2:11806973-11806992 | None:intergenic | 45.0% | |
| CCTGAGGAATTACAGAGAAG+GGG | - | chr5_2:11807164-11807183 | Msa0757090:intron | 45.0% | |
| TAGCAGGGCAGTAAGTAACT+AGG | - | chr5_2:11807338-11807357 | Msa0757090:intron | 45.0% | |
| ! | TACGTTGGCACAAGTACTGT+AGG | + | chr5_2:11807364-11807383 | None:intergenic | 45.0% |
| GGAGATGTACCACTTATTCC+TGG | - | chr5_2:11807501-11807520 | Msa0757090:intron | 45.0% | |
| GCAATATCGATATGTGCACC+TGG | - | chr5_2:11807784-11807803 | Msa0757090:CDS | 45.0% | |
| ! | GGTGTTGTGCAACAGTTTGT+TGG | - | chr5_2:11807979-11807998 | Msa0757090:CDS | 45.0% |
| !! | TGCAACAGTTTGTTGGCCAT+GGG | - | chr5_2:11807986-11808005 | Msa0757090:CDS | 45.0% |
| CGACGTGGAGAAACAATTCC+AGG | + | chr5_2:11805273-11805292 | None:intergenic | 50.0% | |
| TCCACGTCGAAAAGTTCCCA+AGG | - | chr5_2:11805284-11805303 | Msa0757090:intron | 50.0% | |
| ! | TCCTTGGGAACTTTTCGACG+TGG | + | chr5_2:11805288-11805307 | None:intergenic | 50.0% |
| GTAAAATCCATGGTTCCGCC+AGG | - | chr5_2:11805327-11805346 | Msa0757090:intron | 50.0% | |
| GTATGCTGGCACCTTAGTCA+AGG | - | chr5_2:11805434-11805453 | Msa0757090:CDS | 50.0% | |
| !! | CTTTTTCGCCACTCGCTTCA+AGG | - | chr5_2:11805472-11805491 | Msa0757090:intron | 50.0% |
| TACCCGTCTCCTCTTGGTTA+TGG | - | chr5_2:11806210-11806229 | Msa0757090:intron | 50.0% | |
| CACCATAACCAAGAGGAGAC+GGG | + | chr5_2:11806215-11806234 | None:intergenic | 50.0% | |
| CCACCATAACCAAGAGGAGA+CGG | + | chr5_2:11806216-11806235 | None:intergenic | 50.0% | |
| ACCAGATTCACGTTCGCTTG+AGG | - | chr5_2:11806287-11806306 | Msa0757090:intron | 50.0% | |
| ACCTCAAGCGAACGTGAATC+TGG | + | chr5_2:11806291-11806310 | None:intergenic | 50.0% | |
| !! | TGCTTTTTGTTCAGGTGGGG+AGG | - | chr5_2:11806472-11806491 | Msa0757090:intron | 50.0% |
| ! | GCTTTTTGTTCAGGTGGGGA+GGG | - | chr5_2:11806473-11806492 | Msa0757090:intron | 50.0% |
| ! | CTTTTTGTTCAGGTGGGGAG+GGG | - | chr5_2:11806474-11806493 | Msa0757090:intron | 50.0% |
| ! | TTTTTGTTCAGGTGGGGAGG+GGG | - | chr5_2:11806475-11806494 | Msa0757090:intron | 50.0% |
| TATATTGTTGGAGGGGACGG+AGG | - | chr5_2:11806594-11806613 | Msa0757090:intron | 50.0% | |
| !! | TTGCGGGGATGTTGATGATG+AGG | - | chr5_2:11806876-11806895 | Msa0757090:intron | 50.0% |
| TGCCAACGATGGCTGTGATT+TGG | - | chr5_2:11806933-11806952 | Msa0757090:CDS | 50.0% | |
| CACCAAATCACAGCCATCGT+TGG | + | chr5_2:11806938-11806957 | None:intergenic | 50.0% | |
| CCCCTTCTCTGTAATTCCTC+AGG | + | chr5_2:11807167-11807186 | None:intergenic | 50.0% | |
| ATCGATATGTGCACCTGGAG+TGG | - | chr5_2:11807789-11807808 | Msa0757090:CDS | 50.0% | |
| !! | GTGCAACAGTTTGTTGGCCA+TGG | - | chr5_2:11807985-11808004 | Msa0757090:CDS | 50.0% |
| !! | GCAACAGTTTGTTGGCCATG+GGG | - | chr5_2:11807987-11808006 | Msa0757090:CDS | 50.0% |
| GAAAAACACGTCCAACCCCA+TGG | + | chr5_2:11808005-11808024 | None:intergenic | 50.0% | |
| GCGCAGGTTCTTCAGTATGC+TGG | - | chr5_2:11805420-11805439 | Msa0757090:CDS | 55.0% | |
| CCGTCTCCTCTTGGTTATGG+TGG | - | chr5_2:11806213-11806232 | Msa0757090:intron | 55.0% | |
| !! | CAGTTTGTTGGCCATGGGGT+TGG | - | chr5_2:11807991-11808010 | Msa0757090:CDS | 55.0% |
| TCAGGTCCACTCGCAATCCC+TGG | + | chr5_2:11805348-11805367 | None:intergenic | 60.0% | |
| !! | TTCTGGAAGGCTTGCTGCGC+AGG | - | chr5_2:11805404-11805423 | Msa0757090:CDS | 60.0% |
| CGCAATCCCTGGCGGAACCA+TGG | + | chr5_2:11805337-11805356 | None:intergenic | 65.0% | |
| GTTCCGCCAGGGATTGCGAG+TGG | - | chr5_2:11805339-11805358 | Msa0757090:intron | 65.0% | |
| GGTCCACTCGCAATCCCTGG+CGG | + | chr5_2:11805345-11805364 | None:intergenic | 65.0% | |
| GGTGCGTACCCGTCTCCTCT+TGG | - | chr5_2:11806204-11806223 | Msa0757090:intron | 65.0% | |
| !! | GTGGGGAGGGGGACTAGTCA+TGG | - | chr5_2:11806486-11806505 | Msa0757090:intron | 65.0% |
| TGTTGGAGGGGACGGAGGCT+AGG | - | chr5_2:11806599-11806618 | Msa0757090:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 11805168 | 11808059 | 11805168 | ID=Msa0757090;Name=Msa0757090 |
| chr5_2 | mRNA | 11805168 | 11808059 | 11805168 | ID=Msa0757090-mRNA-1;Parent=Msa0757090;Name=Msa0757090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=12|1|0.83|1|1|1|6|0|245 |
| chr5_2 | exon | 11805168 | 11805273 | 11805168 | ID=Msa0757090-mRNA-1:exon:5307;Parent=Msa0757090-mRNA-1 |
| chr5_2 | exon | 11805388 | 11805467 | 11805388 | ID=Msa0757090-mRNA-1:exon:5306;Parent=Msa0757090-mRNA-1 |
| chr5_2 | exon | 11806312 | 11806383 | 11806312 | ID=Msa0757090-mRNA-1:exon:5305;Parent=Msa0757090-mRNA-1 |
| chr5_2 | exon | 11806800 | 11806841 | 11806800 | ID=Msa0757090-mRNA-1:exon:5304;Parent=Msa0757090-mRNA-1 |
| chr5_2 | exon | 11806919 | 11807080 | 11806919 | ID=Msa0757090-mRNA-1:exon:5303;Parent=Msa0757090-mRNA-1 |
| chr5_2 | exon | 11807772 | 11808059 | 11807772 | ID=Msa0757090-mRNA-1:exon:5302;Parent=Msa0757090-mRNA-1 |
| chr5_2 | five_prime_UTR | 11808048 | 11808059 | 11808048 | ID=Msa0757090-mRNA-1:five_prime_utr;Parent=Msa0757090-mRNA-1 |
| chr5_2 | CDS | 11807772 | 11808047 | 11807772 | ID=Msa0757090-mRNA-1:cds;Parent=Msa0757090-mRNA-1 |
| chr5_2 | CDS | 11806919 | 11807080 | 11806919 | ID=Msa0757090-mRNA-1:cds;Parent=Msa0757090-mRNA-1 |
| chr5_2 | CDS | 11806800 | 11806841 | 11806800 | ID=Msa0757090-mRNA-1:cds;Parent=Msa0757090-mRNA-1 |
| chr5_2 | CDS | 11806312 | 11806383 | 11806312 | ID=Msa0757090-mRNA-1:cds;Parent=Msa0757090-mRNA-1 |
| chr5_2 | CDS | 11805388 | 11805467 | 11805388 | ID=Msa0757090-mRNA-1:cds;Parent=Msa0757090-mRNA-1 |
| chr5_2 | CDS | 11805168 | 11805273 | 11805168 | ID=Msa0757090-mRNA-1:cds;Parent=Msa0757090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
