AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1185030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1185030 MtrunA17_Chr8g0350751 96.552 319 11 0 1 319 1 319 0.0 637
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1185030 AT3G61080.1 75.309 324 75 2 1 319 3 326 0.0 514
Msa1185030 AT3G61080.2 69.714 350 75 3 1 319 3 352 2.10e-179 500

Find 92 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGGAATTCATAGAATT+TGG 0.175018 8_1:-21486679 Msa1185030:CDS
TGGTGGTTCTTTCATCATTA+TGG 0.241705 8_1:-21486695 Msa1185030:CDS
CTTGCTTCCCAGTCTGTTCT+AGG 0.246454 8_1:-21486582 Msa1185030:intron
GAGGCTGAGGCTCTTGGTTT+AGG 0.263673 8_1:-21487059 Msa1185030:CDS
ATATAGTGACAGGACCATTT+TGG 0.278148 8_1:-21486292 Msa1185030:CDS
TTAAATCATTACAACCTCTT+TGG 0.302998 8_1:-21484330 Msa1185030:CDS
TTCTCAAAGCCTGGCTGTTT+AGG 0.332137 8_1:+21484384 None:intergenic
TTACTTACTTGTTTGTGATT+TGG 0.359486 8_1:+21487855 None:intergenic
GGAAAATCTAGTAAAGGCTT+TGG 0.375064 8_1:-21486531 Msa1185030:CDS
AAATGGAGAGCCTGTCATAT+TGG 0.376176 8_1:-21485158 Msa1185030:CDS
CTCTTCAGTACTCTATGAAA+TGG 0.391378 8_1:-21484174 Msa1185030:three_prime_UTR
AAATGGTCCTGTCACTATAT+TGG 0.394002 8_1:+21486295 None:intergenic
TTCGGTATGTCTTGGTGTGC+TGG 0.395863 8_1:-21484708 Msa1185030:CDS
ATGTCTTGGTGTGCTGGCTT+TGG 0.400111 8_1:-21484702 Msa1185030:CDS
GCCTCAGCCTCAAACATTGA+TGG 0.401168 8_1:+21487071 None:intergenic
TCCATCAATGTTTGAGGCTG+AGG 0.407876 8_1:-21487072 Msa1185030:CDS
CATTACAACCTCTTTGGCTC+TGG 0.409972 8_1:-21484324 Msa1185030:CDS
TCTTGGTGTGCTGGCTTTGG+AGG 0.425900 8_1:-21484699 Msa1185030:CDS
CTTGCGCAAATGCACAAATC+AGG 0.431172 8_1:-21486552 Msa1185030:CDS
ATGTTTGAGGCTGAGGCTCT+TGG 0.432655 8_1:-21487065 Msa1185030:CDS
TTGATACAACCACCACCAAC+TGG 0.433145 8_1:+21487255 None:intergenic
ATTAGTGTGCAGCATGAGTA+AGG 0.434515 8_1:-21487337 Msa1185030:intron
ACCACCAACTGGACTAACTT+TGG 0.437254 8_1:+21487266 None:intergenic
TCTAGCTTATTTAAAAGCTT+AGG 0.444051 8_1:-21484265 Msa1185030:exon
TTAGGAGCTATGTATGAAAC+CGG 0.444488 8_1:-21487041 Msa1185030:CDS
GGTCGAATGCCAGCTGCAAC+TGG 0.448517 8_1:+21486316 None:intergenic
CATTCTTTGTCAAAACAAAC+AGG 0.455546 8_1:-21487200 Msa1185030:intron
GGACACAATGAGGCAGAATT+CGG 0.455833 8_1:-21484726 Msa1185030:CDS
TCTCTCCTCTTCTCAAAGCC+TGG 0.466803 8_1:+21484375 None:intergenic
AATAGTGATACAGCAGGTAT+AGG 0.467243 8_1:+21484352 None:intergenic
TAGGTTGGATCGCTACCGTC+TGG 0.477825 8_1:-21486715 Msa1185030:CDS
GAGAGAATCCACTCACGAAC+CGG 0.479292 8_1:+21487312 None:intergenic
GCTTGCTACATGGAGATCTC+TGG 0.484204 8_1:-21485204 Msa1185030:CDS
AAACTCTATATCAGGAGTAT+TGG 0.488540 8_1:-21487095 Msa1185030:intron
TTGACAAGCTTAATCAAATG+AGG 0.493953 8_1:-21484229 Msa1185030:three_prime_UTR
CTGAATCCAGTCTGAAGACC+AGG 0.506368 8_1:+21486365 None:intergenic
TAAATACCTGGTCTTCAGAC+TGG 0.506390 8_1:-21486371 Msa1185030:CDS
TTGTTCTACAGGGCTGAGAC+TGG 0.509426 8_1:-21485272 Msa1185030:intron
ATGGAATTCATAGAATTTGG+CGG 0.510748 8_1:-21486676 Msa1185030:CDS
ATTTGGCGGATCTAGAGATC+AGG 0.518102 8_1:-21486662 Msa1185030:intron
TATTGGTCCATCAATGTTTG+AGG 0.530105 8_1:-21487078 Msa1185030:CDS
CATAGACCATAGTGTGTGAT+TGG 0.532426 8_1:-21487993 None:intergenic
GTGCAGCATGAGTAAGGATC+CGG 0.532558 8_1:-21487331 Msa1185030:CDS
AGAAGAGAAACATGTTGAAG+TGG 0.536929 8_1:+21487903 None:intergenic
TAAAACAGATGTATGTGCAT+TGG 0.537945 8_1:+21484139 None:intergenic
CTTAGGCACACGGATGGTCC+CGG 0.538613 8_1:+21487022 None:intergenic
ACGTTGAAAACACCATTGGC+AGG 0.540479 8_1:-21486503 Msa1185030:intron
ATTAGGTTACCAGTTGCAGC+TGG 0.542187 8_1:-21486325 Msa1185030:CDS
CCGTGTGCCTAAGCCGTACA+AGG 0.543019 8_1:-21487012 Msa1185030:intron
AACAGCCAGGCTTTGAGAAG+AGG 0.543273 8_1:-21484380 Msa1185030:CDS
AAAGTTAGTCCAGTTGGTGG+TGG 0.546218 8_1:-21487264 Msa1185030:CDS
AATCGCTATGATACTGATGC+TGG 0.547084 8_1:-21487225 Msa1185030:CDS
CAGGTAATGCCTAAACAGCC+AGG 0.547187 8_1:-21484393 Msa1185030:CDS
ATAACCAAAGTTAGTCCAGT+TGG 0.549921 8_1:-21487270 Msa1185030:CDS
AAATCAGGAAAATCTAGTAA+AGG 0.552473 8_1:-21486537 Msa1185030:CDS
CTTCCCAGTCTGTTCTAGGA+AGG 0.552709 8_1:-21486578 Msa1185030:intron
ATAGAACCATGCTTGCTACA+TGG 0.553025 8_1:-21485214 Msa1185030:CDS
AGGCAGAATTCGGTATGTCT+TGG 0.554643 8_1:-21484716 Msa1185030:CDS
CCTTGTACGGCTTAGGCACA+CGG 0.555435 8_1:+21487012 None:intergenic
ACATGTTGAAGTGGACATCA+TGG 0.555741 8_1:+21487912 None:intergenic
TTCGACGTTGAAAACACCAT+TGG 0.558330 8_1:-21486507 Msa1185030:CDS
TTTCTCACCTTGTACGGCTT+AGG 0.559656 8_1:+21487005 None:intergenic
CATGCTGGATCCAATATGAC+AGG 0.564809 8_1:+21485148 None:intergenic
TGATGATCAAAGAAAACTTG+AGG 0.565008 8_1:-21484107 Msa1185030:three_prime_UTR
TTCTACAGGGCTGAGACTGG+TGG 0.568183 8_1:-21485269 Msa1185030:intron
TTTGACTTACAGTAACATGC+TGG 0.570451 8_1:+21485133 None:intergenic
ATCTGTATCCAGAGCCAAAG+AGG 0.571034 8_1:+21484316 None:intergenic
TACAATAACATACCTGCCAA+TGG 0.575680 8_1:+21486491 None:intergenic
CATTCGACCAATATAGTGAC+AGG 0.579217 8_1:-21486302 Msa1185030:CDS
GTGTTGGTAAAGCCAAAGAA+AGG 0.585139 8_1:-21487964 Msa1185030:five_prime_UTR
AGATCTCCATGTAGCAAGCA+TGG 0.585342 8_1:+21485208 None:intergenic
ACCAAAGTTAGTCCAGTTGG+TGG 0.585827 8_1:-21487267 Msa1185030:CDS
TGATCAAAGAAAACTTGAGG+TGG 0.585837 8_1:-21484104 Msa1185030:three_prime_UTR
CGTGAGTGGATTCTCTCTGA+AGG 0.586932 8_1:-21487306 Msa1185030:CDS
CACGCCGCTGTTCGACAATG+TGG 0.588014 8_1:-21485239 Msa1185030:CDS
AGACCATAGTGTGTGATTGG+TGG 0.588386 8_1:-21487990 None:intergenic
GATTTAAATAGTGATACAGC+AGG 0.595693 8_1:+21484346 None:intergenic
GTAAGGATCCGGTTCGTGAG+TGG 0.599596 8_1:-21487320 Msa1185030:CDS
CATTTCATAGAGTACTGAAG+AGG 0.608463 8_1:+21484175 None:intergenic
GATCAAAGAAAACTTGAGGT+GGG 0.613365 8_1:-21484103 Msa1185030:three_prime_UTR
TTCTATAGATGGACACAATG+AGG 0.626106 8_1:-21484736 Msa1185030:intron
GTACGGCTTAGGCACACGGA+TGG 0.632306 8_1:+21487016 None:intergenic
GTTGGATCGCTACCGTCTGG+TGG 0.633372 8_1:-21486712 Msa1185030:CDS
GTGTGATTGGTGGAAAGTGT+TGG 0.635030 8_1:-21487980 Msa1185030:five_prime_UTR
GAAGACCAGGTATTTATCTG+TGG 0.641183 8_1:+21486378 None:intergenic
CTACATGGAGATCTCTGGAG+TGG 0.660267 8_1:-21485199 Msa1185030:CDS
ATCTCCACATTGTCGAACAG+CGG 0.678360 8_1:+21485235 None:intergenic
TAGGAGCTATGTATGAAACC+GGG 0.680788 8_1:-21487040 Msa1185030:CDS
GCACACCACAGATAAATACC+TGG 0.681671 8_1:-21486383 Msa1185030:CDS
AAGAAGAAGAGTTGAACACG+TGG 0.690226 8_1:-21487938 Msa1185030:five_prime_UTR
ATGATGAAAGAACCACCAGA+CGG 0.702040 8_1:+21486700 None:intergenic
AGAAGAAGAGTTGAACACGT+GGG 0.738987 8_1:-21487937 Msa1185030:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATTAAGTATTATATACA+AGG - chr8_1:21486324-21486343 Msa1185030:CDS 15.0%
!! CAATTATATAAGGAAAAATA+TGG - chr8_1:21487269-21487288 Msa1185030:CDS 15.0%
!! TTATGTTACTAAAAGATTAG+TGG + chr8_1:21484256-21484275 None:intergenic 20.0%
!!! TTTTACAGTTTCTGTATAAT+TGG - chr8_1:21484330-21484349 Msa1185030:CDS 20.0%
!!! TATACTATATCCTTTTCATT+AGG + chr8_1:21484407-21484426 None:intergenic 20.0%
!! TTAATTAATGCCAATAAGAT+AGG - chr8_1:21484644-21484663 Msa1185030:intron 20.0%
!!! TCATTTTCTCACATTATTAT+CGG + chr8_1:21485134-21485153 None:intergenic 20.0%
!! TGATTGAAATTAACATGTAT+CGG - chr8_1:21485156-21485175 Msa1185030:CDS 20.0%
!! ATTATGGAATTCATAGAATT+TGG - chr8_1:21485370-21485389 Msa1185030:intron 20.0%
!! GTATGTTATTGTAATTGTTA+TGG - chr8_1:21485568-21485587 Msa1185030:intron 20.0%
!! TTTATATTGAATAAACTGAG+CGG - chr8_1:21485876-21485895 Msa1185030:intron 20.0%
!! GAGATTAATATTCTAAATGA+AGG + chr8_1:21486306-21486325 None:intergenic 20.0%
!!! ATATACAAGGTTTTAAATAG+CGG - chr8_1:21486337-21486356 Msa1185030:CDS 20.0%
!! GAAAAAATATCACAAACAAA+TGG + chr8_1:21486640-21486659 None:intergenic 20.0%
!! AGCAATCATACAATTATATA+AGG - chr8_1:21487259-21487278 Msa1185030:CDS 20.0%
!!! ATTCTATAACTCTTATTTTG+AGG - chr8_1:21487376-21487395 Msa1185030:intron 20.0%
!!! AAAATGTCAAGTTATTTTCA+TGG - chr8_1:21487444-21487463 Msa1185030:intron 20.0%
!!! TAATTTTAAATAATCTCTCC+AGG - chr8_1:21487637-21487656 Msa1185030:intron 20.0%
! TTACTTACTTGTTTGTGATT+TGG + chr8_1:21484197-21484216 None:intergenic 25.0%
! TGAAAAGGATATAGTATAGA+AGG - chr8_1:21484409-21484428 Msa1185030:intron 25.0%
! CTTCATATTGAAAATGTATC+CGG - chr8_1:21484451-21484470 Msa1185030:intron 25.0%
! AATACTGAAACTAGTCATTT+AGG + chr8_1:21484556-21484575 None:intergenic 25.0%
!!! TAAATGACTAGTTTCAGTAT+TGG - chr8_1:21484555-21484574 Msa1185030:intron 25.0%
!! TAAAATTTTCTCACCTTGTA+CGG + chr8_1:21485053-21485072 None:intergenic 25.0%
! TGTCATATATCATTGTATGT+TGG - chr8_1:21485179-21485198 Msa1185030:CDS 25.0%
! AATTGAGATAACTTATTGCT+AGG - chr8_1:21485306-21485325 Msa1185030:intron 25.0%
! AAATCAGGAAAATCTAGTAA+AGG - chr8_1:21485512-21485531 Msa1185030:intron 25.0%
!! AAAGTTACCTTTTTCCAAAA+TGG + chr8_1:21485774-21485793 None:intergenic 25.0%
! AAATGTCATACACTAAAATC+AGG + chr8_1:21485859-21485878 None:intergenic 25.0%
! TTATATTGAATAAACTGAGC+GGG - chr8_1:21485877-21485896 Msa1185030:intron 25.0%
! AGATTACACATTCACTAAAT+CGG - chr8_1:21486040-21486059 Msa1185030:intron 25.0%
!!! TTCACTAAATCGGTTTTAAA+CGG - chr8_1:21486050-21486069 Msa1185030:intron 25.0%
! CAAGAATACATGTAAAAACA+AGG + chr8_1:21486230-21486249 None:intergenic 25.0%
!!! CTTGTTTTTACATGTATTCT+TGG - chr8_1:21486228-21486247 Msa1185030:intron 25.0%
!!! AAACCATCTATACCTTTTTT+CGG - chr8_1:21486414-21486433 Msa1185030:intron 25.0%
! GTCTGCAATATATATAATCA+AGG + chr8_1:21486577-21486596 None:intergenic 25.0%
!!! GATATTTTTTCATCGCAATT+TGG - chr8_1:21486649-21486668 Msa1185030:intron 25.0%
!! TATAAATCGTAGAGTCTTAT+TGG + chr8_1:21486747-21486766 None:intergenic 25.0%
! TCAAACATAAAACAAAGAGT+TGG - chr8_1:21487042-21487061 Msa1185030:CDS 25.0%
!!! ACTTTTGCAATTTTTTCTCA+TGG - chr8_1:21487084-21487103 Msa1185030:CDS 25.0%
!! TGATATTTTACACACATGTT+TGG - chr8_1:21487141-21487160 Msa1185030:intron 25.0%
! TTAAATCATTACAACCTCTT+TGG - chr8_1:21487719-21487738 Msa1185030:intron 25.0%
!! TCTAGCTTATTTAAAAGCTT+AGG - chr8_1:21487784-21487803 Msa1185030:intron 25.0%
!!! TGTTTGTGATTTGGTTTTGA+TGG + chr8_1:21484188-21484207 None:intergenic 30.0%
GTGTAATTGTCCTAATGAAA+AGG - chr8_1:21484394-21484413 Msa1185030:intron 30.0%
TTGAATGTAACTAGATAGGT+TGG + chr8_1:21484520-21484539 None:intergenic 30.0%
GTGATTGAATGTAACTAGAT+AGG + chr8_1:21484524-21484543 None:intergenic 30.0%
!!! TGTCTGTGTTAGTTTTTCAT+TGG - chr8_1:21484602-21484621 Msa1185030:intron 30.0%
CATTCTTTGTCAAAACAAAC+AGG - chr8_1:21484849-21484868 Msa1185030:intron 30.0%
!!! TTCTGCTGTTTTTCTTTTGA+TGG - chr8_1:21484895-21484914 Msa1185030:intron 30.0%
GAAAGTTGAAACTCTATATC+AGG - chr8_1:21484946-21484965 Msa1185030:intron 30.0%
! AAACTCTATATCAGGAGTAT+TGG - chr8_1:21484954-21484973 Msa1185030:intron 30.0%
TATCATTGTATGTTGGACAT+TGG - chr8_1:21485186-21485205 Msa1185030:CDS 30.0%
! ATACTGTCATTTCAGATTGA+AGG + chr8_1:21485217-21485236 None:intergenic 30.0%
!!! GTTTTTACTAGTTTGTTCGA+AGG - chr8_1:21485282-21485301 Msa1185030:intron 30.0%
AACTTATTGCTAGGATTTGT+AGG - chr8_1:21485315-21485334 Msa1185030:intron 30.0%
ATGGAATTCATAGAATTTGG+CGG - chr8_1:21485373-21485392 Msa1185030:intron 30.0%
! GTTCTAATAAGAAGTACAAG+CGG - chr8_1:21485428-21485447 Msa1185030:intron 30.0%
TAGTAGTACTGTCACTATAT+TGG + chr8_1:21485800-21485819 None:intergenic 30.0%
TTTGTGCTCTCAATTTCAAT+TGG + chr8_1:21485903-21485922 None:intergenic 30.0%
ATTACGTCAAGTTTACAATC+CGG - chr8_1:21485942-21485961 Msa1185030:intron 30.0%
! TTTTATTACTACAAGGAACC+CGG + chr8_1:21485964-21485983 None:intergenic 30.0%
! TGTGAGCTTTTATTACTACA+AGG + chr8_1:21485971-21485990 None:intergenic 30.0%
TCAAGGGTAAAGAATGTTTA+CGG + chr8_1:21486002-21486021 None:intergenic 30.0%
ACTGTACGATCTTAAATCAA+GGG + chr8_1:21486018-21486037 None:intergenic 30.0%
AACTGTACGATCTTAAATCA+AGG + chr8_1:21486019-21486038 None:intergenic 30.0%
AAACGGCCATTAATTTAGAT+CGG - chr8_1:21486067-21486086 Msa1185030:intron 30.0%
!! TCCATTTTTCTCTGCTTTAA+CGG + chr8_1:21486497-21486516 None:intergenic 30.0%
! AACATAAGCTCTGACAAAAA+TGG - chr8_1:21486874-21486893 Msa1185030:intron 30.0%
ATTTGTAAGAAGCTGTTCTT+TGG - chr8_1:21486940-21486959 Msa1185030:intron 30.0%
! CATAAAACAAAGAGTTGGTT+TGG - chr8_1:21487047-21487066 Msa1185030:CDS 30.0%
CAACAATGTGACTATATGTT+TGG - chr8_1:21487490-21487509 Msa1185030:intron 30.0%
GATTTAAATAGTGATACAGC+AGG + chr8_1:21487706-21487725 None:intergenic 30.0%
TTGACAAGCTTAATCAAATG+AGG - chr8_1:21487820-21487839 Msa1185030:intron 30.0%
TAAAACAGATGTATGTGCAT+TGG + chr8_1:21487913-21487932 None:intergenic 30.0%
TGATGATCAAAGAAAACTTG+AGG - chr8_1:21487942-21487961 Msa1185030:five_prime_UTR 30.0%
! CTTCTTCTTTTGCCTTTCTT+TGG + chr8_1:21484100-21484119 None:intergenic 35.0%
AGAAGAGAAACATGTTGAAG+TGG + chr8_1:21484149-21484168 None:intergenic 35.0%
!!! GATTTGGTTTTGATGGAAGA+AGG + chr8_1:21484181-21484200 None:intergenic 35.0%
TTCCTCAAAGCCTATCTTAT+TGG + chr8_1:21484657-21484676 None:intergenic 35.0%
ATAACCAAAGTTAGTCCAGT+TGG - chr8_1:21484779-21484798 Msa1185030:intron 35.0%
GTCAAAACAAACAGGTAGTA+TGG - chr8_1:21484857-21484876 Msa1185030:intron 35.0%
TATTGGTCCATCAATGTTTG+AGG - chr8_1:21484971-21484990 Msa1185030:intron 35.0%
TTAGGAGCTATGTATGAAAC+CGG - chr8_1:21485008-21485027 Msa1185030:intron 35.0%
TTAGCAGTAGTAAGTTGTGA+AGG - chr8_1:21485244-21485263 Msa1185030:CDS 35.0%
TAGTAAGTTGTGAAGGAATC+AGG - chr8_1:21485251-21485270 Msa1185030:CDS 35.0%
TATTGCTAGGATTTGTAGGT+TGG - chr8_1:21485319-21485338 Msa1185030:intron 35.0%
TGGTGGTTCTTTCATCATTA+TGG - chr8_1:21485354-21485373 Msa1185030:intron 35.0%
GGAAAATCTAGTAAAGGCTT+TGG - chr8_1:21485518-21485537 Msa1185030:intron 35.0%
TACAATAACATACCTGCCAA+TGG + chr8_1:21485561-21485580 None:intergenic 35.0%
! TCAGACTGGATTCAGTTTTA+CGG - chr8_1:21485692-21485711 Msa1185030:intron 35.0%
AAATGGTCCTGTCACTATAT+TGG + chr8_1:21485757-21485776 None:intergenic 35.0%
! ATATAGTGACAGGACCATTT+TGG - chr8_1:21485757-21485776 Msa1185030:intron 35.0%
AAATCAGCGAATGGAAAGAA+CGG + chr8_1:21485826-21485845 None:intergenic 35.0%
!!! TTCTTTCCATTCGCTGATTT+TGG - chr8_1:21485826-21485845 Msa1185030:intron 35.0%
ATACACTAAAATCAGGTGCA+AGG + chr8_1:21485852-21485871 None:intergenic 35.0%
TTACGTCAAGTTTACAATCC+GGG - chr8_1:21485943-21485962 Msa1185030:intron 35.0%
AACCCTCCGATCTAAATTAA+TGG + chr8_1:21486076-21486095 None:intergenic 35.0%
TATGCAGTAAACTTGGGAAA+TGG + chr8_1:21486137-21486156 None:intergenic 35.0%
ATTTCCCAAGTTTACTGCAT+AGG - chr8_1:21486136-21486155 Msa1185030:intron 35.0%
TTTCCCAAGTTTACTGCATA+GGG - chr8_1:21486137-21486156 Msa1185030:intron 35.0%
TTTCCCTATGCAGTAAACTT+GGG + chr8_1:21486143-21486162 None:intergenic 35.0%
! TTTTCCCTATGCAGTAAACT+TGG + chr8_1:21486144-21486163 None:intergenic 35.0%
! AGGAGGCTATTATTTTCTAG+AGG - chr8_1:21486165-21486184 Msa1185030:intron 35.0%
!! AGACACTTGTTCTAGGATTA+AGG + chr8_1:21486256-21486275 None:intergenic 35.0%
CGTTAAGGAATTTGCGATTT+CGG - chr8_1:21486363-21486382 Msa1185030:CDS 35.0%
AACGGAGTGAACAAAAAACA+CGG + chr8_1:21486479-21486498 None:intergenic 35.0%
TCCGTTAAAGCAGAGAAAAA+TGG - chr8_1:21486493-21486512 Msa1185030:intron 35.0%
!! AAATCGTAGAGTCTTATTGG+AGG + chr8_1:21486744-21486763 None:intergenic 35.0%
!! ATCTGTTTGACTTGTTCTAC+AGG - chr8_1:21486766-21486785 Msa1185030:intron 35.0%
!! TCTGTTTGACTTGTTCTACA+GGG - chr8_1:21486767-21486786 Msa1185030:intron 35.0%
! TTTGACTTACAGTAACATGC+TGG + chr8_1:21486919-21486938 None:intergenic 35.0%
TTCTTTGGCAACCTATGTTT+GGG - chr8_1:21486955-21486974 Msa1185030:intron 35.0%
! GACTCAGTTTCAAATGGTTT+TGG - chr8_1:21487008-21487027 Msa1185030:intron 35.0%
! GTTCTACATCAGTTTGGTTT+GGG + chr8_1:21487112-21487131 None:intergenic 35.0%
CAAACCAAACTGATGTAGAA+CGG - chr8_1:21487111-21487130 Msa1185030:intron 35.0%
AAACCAAACTGATGTAGAAC+GGG - chr8_1:21487112-21487131 Msa1185030:intron 35.0%
! CGCTTAGAATGTGAAGTATT+AGG - chr8_1:21487177-21487196 Msa1185030:intron 35.0%
CCAATTATAAGCAAAGCTAG+AGG + chr8_1:21487215-21487234 None:intergenic 35.0%
!! CCTCTAGCTTTGCTTATAAT+TGG - chr8_1:21487212-21487231 Msa1185030:CDS 35.0%
! ATGCTGTCTTGTTCTATAGA+TGG - chr8_1:21487302-21487321 Msa1185030:CDS 35.0%
TTCTATAGATGGACACAATG+AGG - chr8_1:21487313-21487332 Msa1185030:CDS 35.0%
AATAGTGATACAGCAGGTAT+AGG + chr8_1:21487700-21487719 None:intergenic 35.0%
!! CATTTCATAGAGTACTGAAG+AGG + chr8_1:21487877-21487896 None:intergenic 35.0%
CTCTTCAGTACTCTATGAAA+TGG - chr8_1:21487875-21487894 Msa1185030:CDS 35.0%
TGATCAAAGAAAACTTGAGG+TGG - chr8_1:21487945-21487964 Msa1185030:five_prime_UTR 35.0%
GATCAAAGAAAACTTGAGGT+GGG - chr8_1:21487946-21487965 Msa1185030:five_prime_UTR 35.0%
! GTGTTGGTAAAGCCAAAGAA+AGG - chr8_1:21484085-21484104 Msa1185030:three_prime_UTR 40.0%
AAGAAGAAGAGTTGAACACG+TGG - chr8_1:21484111-21484130 Msa1185030:three_prime_UTR 40.0%
AGAAGAAGAGTTGAACACGT+GGG - chr8_1:21484112-21484131 Msa1185030:three_prime_UTR 40.0%
ACATGTTGAAGTGGACATCA+TGG + chr8_1:21484140-21484159 None:intergenic 40.0%
! TAGTGGTGTCAGAAACAACA+TGG + chr8_1:21484239-21484258 None:intergenic 40.0%
AACATGTGTCAGACATGTGT+TGG + chr8_1:21484480-21484499 None:intergenic 40.0%
!! GTAACTAGATAGGTTGGTGT+TGG + chr8_1:21484514-21484533 None:intergenic 40.0%
TGCCAATAAGATAGGCTTTG+AGG - chr8_1:21484652-21484671 Msa1185030:intron 40.0%
ATTAGTGTGCAGCATGAGTA+AGG - chr8_1:21484712-21484731 Msa1185030:CDS 40.0%
AATCGCTATGATACTGATGC+TGG - chr8_1:21484824-21484843 Msa1185030:intron 40.0%
! TGATGGTGTGAGCTATTTGT+TGG - chr8_1:21484912-21484931 Msa1185030:intron 40.0%
TAGGAGCTATGTATGAAACC+GGG - chr8_1:21485009-21485028 Msa1185030:intron 40.0%
ATGATGAAAGAACCACCAGA+CGG + chr8_1:21485352-21485371 None:intergenic 40.0%
TTCGACGTTGAAAACACCAT+TGG - chr8_1:21485542-21485561 Msa1185030:intron 40.0%
GAAGACCAGGTATTTATCTG+TGG + chr8_1:21485674-21485693 None:intergenic 40.0%
! TAAATACCTGGTCTTCAGAC+TGG - chr8_1:21485678-21485697 Msa1185030:intron 40.0%
CATTCGACCAATATAGTGAC+AGG - chr8_1:21485747-21485766 Msa1185030:intron 40.0%
!! GACAGGACCATTTTGGAAAA+AGG - chr8_1:21485764-21485783 Msa1185030:intron 40.0%
GGCCATTAATTTAGATCGGA+GGG - chr8_1:21486071-21486090 Msa1185030:intron 40.0%
TAATTTAGATCGGAGGGTTG+AGG - chr8_1:21486077-21486096 Msa1185030:intron 40.0%
!! TGTTTGGTTCTGTTACTGCA+GGG - chr8_1:21486108-21486127 Msa1185030:intron 40.0%
GTTTACTGCATAGGGAAAAC+AGG - chr8_1:21486145-21486164 Msa1185030:intron 40.0%
GTCTCATAGACACTTGTTCT+AGG + chr8_1:21486263-21486282 None:intergenic 40.0%
TTTAAATAGCGGTCGCGTTA+AGG - chr8_1:21486348-21486367 Msa1185030:CDS 40.0%
ATTTGCGATTTCGGCTGTTA+CGG - chr8_1:21486372-21486391 Msa1185030:CDS 40.0%
! CAGCCGAAAAAAGGTATAGA+TGG + chr8_1:21486420-21486439 None:intergenic 40.0%
! TTTTGTCACGACTGCTTTCA+CGG - chr8_1:21486531-21486550 Msa1185030:CDS 40.0%
! ATAGAACCATGCTTGCTACA+TGG - chr8_1:21486835-21486854 Msa1185030:intron 40.0%
AAATGGAGAGCCTGTCATAT+TGG - chr8_1:21486891-21486910 Msa1185030:intron 40.0%
GTTCTTTGGCAACCTATGTT+TGG - chr8_1:21486954-21486973 Msa1185030:intron 40.0%
TTCACTCCTCCTAGATATTC+CGG + chr8_1:21486982-21487001 None:intergenic 40.0%
ACGAACGACTCAGTTTCAAA+TGG - chr8_1:21487002-21487021 Msa1185030:intron 40.0%
CGTTCTACATCAGTTTGGTT+TGG + chr8_1:21487113-21487132 None:intergenic 40.0%
GTCAGAAACAACATGGTACG+AGG + chr8_1:21484232-21484251 None:intergenic 45.0%
ACCAAAGTTAGTCCAGTTGG+TGG - chr8_1:21484782-21484801 Msa1185030:intron 45.0%
ACCACCAACTGGACTAACTT+TGG + chr8_1:21484786-21484805 None:intergenic 45.0%
!! AAAGTTAGTCCAGTTGGTGG+TGG - chr8_1:21484785-21484804 Msa1185030:intron 45.0%
TTGATACAACCACCACCAAC+TGG + chr8_1:21484797-21484816 None:intergenic 45.0%
! TCCATCAATGTTTGAGGCTG+AGG - chr8_1:21484977-21484996 Msa1185030:intron 45.0%
TTTCTCACCTTGTACGGCTT+AGG + chr8_1:21485047-21485066 None:intergenic 45.0%
ACAAACACAGACACAGAAGC+TGG - chr8_1:21485086-21485105 Msa1185030:intron 45.0%
! ATTTGGCGGATCTAGAGATC+AGG - chr8_1:21485387-21485406 Msa1185030:intron 45.0%
CTTCCTTCCTAGAACAGACT+GGG + chr8_1:21485477-21485496 None:intergenic 45.0%
CTTGCGCAAATGCACAAATC+AGG - chr8_1:21485497-21485516 Msa1185030:intron 45.0%
ACGTTGAAAACACCATTGGC+AGG - chr8_1:21485546-21485565 Msa1185030:intron 45.0%
GCACACCACAGATAAATACC+TGG - chr8_1:21485666-21485685 Msa1185030:intron 45.0%
! TTTTACGGCGAGCACAGATT+AGG - chr8_1:21485707-21485726 Msa1185030:intron 45.0%
ATTAGGTTACCAGTTGCAGC+TGG - chr8_1:21485724-21485743 Msa1185030:intron 45.0%
CGGCCATTAATTTAGATCGG+AGG - chr8_1:21486070-21486089 Msa1185030:intron 45.0%
GGTTGAGGTCAGTAACTGTT+TGG - chr8_1:21486092-21486111 Msa1185030:intron 45.0%
!! CTGTTTGGTTCTGTTACTGC+AGG - chr8_1:21486107-21486126 Msa1185030:intron 45.0%
TACTGCATAGGGAAAACAGG+AGG - chr8_1:21486148-21486167 Msa1185030:intron 45.0%
! ATTTCGGCTGTTACGGACTA+TGG - chr8_1:21486379-21486398 Msa1185030:CDS 45.0%
ATCTCCACATTGTCGAACAG+CGG + chr8_1:21486817-21486836 None:intergenic 45.0%
AGATCTCCATGTAGCAAGCA+TGG + chr8_1:21486844-21486863 None:intergenic 45.0%
CATGCTGGATCCAATATGAC+AGG + chr8_1:21486904-21486923 None:intergenic 45.0%
GATATTCCGGTCCCAAACAT+AGG + chr8_1:21486969-21486988 None:intergenic 45.0%
! TGTTTGGGACCGGAATATCT+AGG - chr8_1:21486970-21486989 Msa1185030:intron 45.0%
CAACCCGTTCTACATCAGTT+TGG + chr8_1:21487118-21487137 None:intergenic 45.0%
CAAACTGATGTAGAACGGGT+TGG - chr8_1:21487116-21487135 Msa1185030:intron 45.0%
TGCTCTAGTCTCACACATCT+GGG + chr8_1:21487243-21487262 None:intergenic 45.0%
TTGCTCTAGTCTCACACATC+TGG + chr8_1:21487244-21487263 None:intergenic 45.0%
GGACACAATGAGGCAGAATT+CGG - chr8_1:21487323-21487342 Msa1185030:CDS 45.0%
AGGCAGAATTCGGTATGTCT+TGG - chr8_1:21487333-21487352 Msa1185030:CDS 45.0%
TTCTCAAAGCCTGGCTGTTT+AGG + chr8_1:21487668-21487687 None:intergenic 45.0%
! CATTACAACCTCTTTGGCTC+TGG - chr8_1:21487725-21487744 Msa1185030:intron 45.0%
ATCTGTATCCAGAGCCAAAG+AGG + chr8_1:21487736-21487755 None:intergenic 45.0%
GTCAGACATGTGTTGGACAC+CGG + chr8_1:21484473-21484492 None:intergenic 50.0%
GTGCAGCATGAGTAAGGATC+CGG - chr8_1:21484718-21484737 Msa1185030:CDS 50.0%
GAGAGAATCCACTCACGAAC+CGG + chr8_1:21484740-21484759 None:intergenic 50.0%
! CGTGAGTGGATTCTCTCTGA+AGG - chr8_1:21484743-21484762 Msa1185030:intron 50.0%
GCCTCAGCCTCAAACATTGA+TGG + chr8_1:21484981-21485000 None:intergenic 50.0%
! ATGTTTGAGGCTGAGGCTCT+TGG - chr8_1:21484984-21485003 Msa1185030:intron 50.0%
CTTGCTTCCCAGTCTGTTCT+AGG - chr8_1:21485467-21485486 Msa1185030:intron 50.0%
!! CTTCCCAGTCTGTTCTAGGA+AGG - chr8_1:21485471-21485490 Msa1185030:intron 50.0%
GCTTCCTTCCTAGAACAGAC+TGG + chr8_1:21485478-21485497 None:intergenic 50.0%
CTGAATCCAGTCTGAAGACC+AGG + chr8_1:21485687-21485706 None:intergenic 50.0%
GCAAGGCCAAAATCAGCGAA+TGG + chr8_1:21485835-21485854 None:intergenic 50.0%
!!! TTTTTTCGGCTGTTCCCTCG+CGG - chr8_1:21486428-21486447 Msa1185030:intron 50.0%
ATAACACTGTTACGCCGCGA+GGG + chr8_1:21486445-21486464 None:intergenic 50.0%
ACGACTGCTTTCACGGTAAC+AGG - chr8_1:21486538-21486557 Msa1185030:CDS 50.0%
TTGTTCTACAGGGCTGAGAC+TGG - chr8_1:21486777-21486796 Msa1185030:intron 50.0%
! GCTTGCTACATGGAGATCTC+TGG - chr8_1:21486845-21486864 Msa1185030:intron 50.0%
! CTACATGGAGATCTCTGGAG+TGG - chr8_1:21486850-21486869 Msa1185030:intron 50.0%
! TGGCAACCTATGTTTGGGAC+CGG - chr8_1:21486960-21486979 Msa1185030:intron 50.0%
TTGGGACCGGAATATCTAGG+AGG - chr8_1:21486973-21486992 Msa1185030:intron 50.0%
! TTCGGTATGTCTTGGTGTGC+TGG - chr8_1:21487341-21487360 Msa1185030:intron 50.0%
!! ATGTCTTGGTGTGCTGGCTT+TGG - chr8_1:21487347-21487366 Msa1185030:intron 50.0%
CTGGCTGTTTAGGCATTACC+TGG + chr8_1:21487658-21487677 None:intergenic 50.0%
CAGGTAATGCCTAAACAGCC+AGG - chr8_1:21487656-21487675 Msa1185030:intron 50.0%
!! AACAGCCAGGCTTTGAGAAG+AGG - chr8_1:21487669-21487688 Msa1185030:intron 50.0%
TCTCTCCTCTTCTCAAAGCC+TGG + chr8_1:21487677-21487696 None:intergenic 50.0%
! GTAAGGATCCGGTTCGTGAG+TGG - chr8_1:21484729-21484748 Msa1185030:CDS 55.0%
GAGGCTGAGGCTCTTGGTTT+AGG - chr8_1:21484990-21485009 Msa1185030:intron 55.0%
CCTTGTACGGCTTAGGCACA+CGG + chr8_1:21485040-21485059 None:intergenic 55.0%
! TAGGTTGGATCGCTACCGTC+TGG - chr8_1:21485334-21485353 Msa1185030:intron 55.0%
GCGAGGGAACAGCCGAAAAA+AGG + chr8_1:21486429-21486448 None:intergenic 55.0%
GATAACACTGTTACGCCGCG+AGG + chr8_1:21486446-21486465 None:intergenic 55.0%
GCGGCGTAACAGTGTTATCG+TGG - chr8_1:21486447-21486466 Msa1185030:intron 55.0%
TTCTACAGGGCTGAGACTGG+TGG - chr8_1:21486780-21486799 Msa1185030:intron 55.0%
!! TCTTGGTGTGCTGGCTTTGG+AGG - chr8_1:21487350-21487369 Msa1185030:intron 55.0%
CTTAGGCACACGGATGGTCC+CGG + chr8_1:21485030-21485049 None:intergenic 60.0%
GTACGGCTTAGGCACACGGA+TGG + chr8_1:21485036-21485055 None:intergenic 60.0%
CCGTGTGCCTAAGCCGTACA+AGG - chr8_1:21485037-21485056 Msa1185030:intron 60.0%
GTTGGATCGCTACCGTCTGG+TGG - chr8_1:21485337-21485356 Msa1185030:intron 60.0%
GGTCGAATGCCAGCTGCAAC+TGG + chr8_1:21485736-21485755 None:intergenic 60.0%
CACGCCGCTGTTCGACAATG+TGG - chr8_1:21486810-21486829 Msa1185030:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 21484070 21488001 21484070 ID=Msa1185030;Name=Msa1185030
chr8_1 mRNA 21484070 21488001 21484070 ID=Msa1185030-mRNA-1;Parent=Msa1185030;Name=Msa1185030-mRNA-1;_AED=0.16;_eAED=0.16;_QI=69|1|1|1|0.87|0.88|9|196|319
chr8_1 exon 21484070 21484412 21484070 ID=Msa1185030-mRNA-1:exon:8121;Parent=Msa1185030-mRNA-1
chr8_1 exon 21484674 21484750 21484674 ID=Msa1185030-mRNA-1:exon:8120;Parent=Msa1185030-mRNA-1
chr8_1 exon 21485143 21485283 21485143 ID=Msa1185030-mRNA-1:exon:8119;Parent=Msa1185030-mRNA-1
chr8_1 exon 21486286 21486404 21486286 ID=Msa1185030-mRNA-1:exon:8118;Parent=Msa1185030-mRNA-1
chr8_1 exon 21486504 21486592 21486504 ID=Msa1185030-mRNA-1:exon:8117;Parent=Msa1185030-mRNA-1
chr8_1 exon 21486663 21486734 21486663 ID=Msa1185030-mRNA-1:exon:8116;Parent=Msa1185030-mRNA-1
chr8_1 exon 21487013 21487103 21487013 ID=Msa1185030-mRNA-1:exon:8115;Parent=Msa1185030-mRNA-1
chr8_1 exon 21487201 21487354 21487201 ID=Msa1185030-mRNA-1:exon:8114;Parent=Msa1185030-mRNA-1
chr8_1 exon 21487863 21488001 21487863 ID=Msa1185030-mRNA-1:exon:8113;Parent=Msa1185030-mRNA-1
chr8_1 five_prime_UTR 21487933 21488001 21487933 ID=Msa1185030-mRNA-1:five_prime_utr;Parent=Msa1185030-mRNA-1
chr8_1 CDS 21487863 21487932 21487863 ID=Msa1185030-mRNA-1:cds;Parent=Msa1185030-mRNA-1
chr8_1 CDS 21487201 21487354 21487201 ID=Msa1185030-mRNA-1:cds;Parent=Msa1185030-mRNA-1
chr8_1 CDS 21487013 21487103 21487013 ID=Msa1185030-mRNA-1:cds;Parent=Msa1185030-mRNA-1
chr8_1 CDS 21486663 21486734 21486663 ID=Msa1185030-mRNA-1:cds;Parent=Msa1185030-mRNA-1
chr8_1 CDS 21486504 21486592 21486504 ID=Msa1185030-mRNA-1:cds;Parent=Msa1185030-mRNA-1
chr8_1 CDS 21486286 21486404 21486286 ID=Msa1185030-mRNA-1:cds;Parent=Msa1185030-mRNA-1
chr8_1 CDS 21485143 21485283 21485143 ID=Msa1185030-mRNA-1:cds;Parent=Msa1185030-mRNA-1
chr8_1 CDS 21484674 21484750 21484674 ID=Msa1185030-mRNA-1:cds;Parent=Msa1185030-mRNA-1
chr8_1 CDS 21484266 21484412 21484266 ID=Msa1185030-mRNA-1:cds;Parent=Msa1185030-mRNA-1
chr8_1 three_prime_UTR 21484070 21484265 21484070 ID=Msa1185030-mRNA-1:three_prime_utr;Parent=Msa1185030-mRNA-1
Gene Sequence

>Msa1185030

ATGATGTCCACTTCAACATGTTTCTCTTCTCTTCTTCTACCTTCTTCCATCAAAACCAAATCACAAACAATGTGCAGCATGAGTAAGGATCCGGTTCGTGAGTGGATTCTCTCTGAAGGAAAAGCTTCAAAGATAACCAAAGTTAGTCCAGTTGGTGGTGGTTGTATCAATTTTGCGAATCGCTATGATACTGATGCTGGTTCATTCTTTGTCAAAACAAACAGGAGTATTGGTCCATCAATGTTTGAGGCTGAGGCTCTTGGTTTAGGAGCTATGTATGAAACCGGGACCATCCGTGTGCCTAAGCCGTACAAGGTTGGATCGCTACCGTCTGGTGGTTCTTTCATCATTATGGAATTCATAGAATTTGGCGGATCTAGAGATCAGTCTGTTCTAGGAAGGAAGCTTGCGCAAATGCACAAATCAGGAAAATCTAGTAAAGGCTTTGGTTTCGACGTTGAAAACACCATTGGCAGCACACCACAGATAAATACCTGGTCTTCAGACTGGATTCAGTTTTACGGCGAGCACAGATTAGGTTACCAGTTGCAGCTGGCATTCGACCAATATAGTGACAGGACCATTTTGGAAAAAGGGCTGAGACTGGTGGAAAACATCACGCCGCTGTTCGACAATGTGGAGATAGAACCATGCTTGCTACATGGAGATCTCTGGAGTGGTAACATAAGCTCTGACAAAAATGGAGAGCCTGTCATATTGGATCCAGCATGTTACTATGGACACAATGAGGCAGAATTCGGTATGTCTTGGTGTGCTGGCTTTGGAGGCTCATTCTATAACTCTTATTTTGAGGTAATGCCTAAACAGCCAGGCTTTGAGAAGAGGAGAGACCTATACCTGCTGTATCACTATTTAAATCATTACAACCTCTTTGGCTCTGGATACAGATCATCTGCTATGTCTATCATTGATGATTATCTAGCTTATTTAAAAGCTTAG

Protein sequence

>Msa1185030

MMSTSTCFSSLLLPSSIKTKSQTMCSMSKDPVREWILSEGKASKITKVSPVGGGCINFANRYDTDAGSFFVKTNRSIGPSMFEAEALGLGAMYETGTIRVPKPYKVGSLPSGGSFIIMEFIEFGGSRDQSVLGRKLAQMHKSGKSSKGFGFDVENTIGSTPQINTWSSDWIQFYGEHRLGYQLQLAFDQYSDRTILEKGLRLVENITPLFDNVEIEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLAYLKA*