AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0028900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028900 MtrunA17_Chr1g0185521 98.833 257 3 0 1 257 1 257 0.0 508
Msa0028900 MtrunA17_Chr8g0353481 36.723 177 110 1 81 257 84 258 3.82e-29 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028900 AT3G63190.1 64.815 270 82 5 1 257 1 270 1.12e-110 321
Msa0028900 AT3G01800.1 38.235 170 103 1 88 257 95 262 1.11e-28 110

Find 51 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCACTTCTCCATCGTTAT+TGG 0.194025 1_1:+54022317 None:intergenic
TCCTGATGCCAGTTCACTTT+TGG 0.242942 1_1:-54022764 Msa0028900:CDS
AGATTTGTCTAGCGATTTGC+AGG 0.346351 1_1:-54020159 Msa0028900:intron
ATCACTTCTCCATCGTTATT+GGG 0.347336 1_1:+54022318 None:intergenic
ACATACCTTGATTTGTCATA+TGG 0.356032 1_1:+54022736 None:intergenic
ACATTATAGGTGGAATACTA+TGG 0.360282 1_1:-54022826 Msa0028900:intron
AATTTCAGTTCTATAAGAAC+TGG 0.378877 1_1:-54023815 Msa0028900:CDS
GTGTGCAGAAAGAAGGGCTT+TGG 0.399732 1_1:+54024221 None:intergenic
GCAATGGTCTTCAAGCTAAC+TGG 0.399998 1_1:+54022799 None:intergenic
AGAAGGGCTTTGGGAACAAT+TGG 0.409380 1_1:+54024231 None:intergenic
AAAGAACTCTTGACAATGTT+AGG 0.410140 1_1:-54023841 Msa0028900:CDS
ATGGAACGGAGTGGTGTTGT+TGG 0.441029 1_1:+54024267 None:intergenic
GCAGACACTCCCTTTCTAAA+GGG 0.448929 1_1:-54024140 Msa0028900:CDS
AGCAGACACTCCCTTTCTAA+AGG 0.450579 1_1:-54024141 Msa0028900:CDS
AGAGCGTTTGATGGTGAAAG+AGG 0.456249 1_1:+54024197 None:intergenic
GGTTGTTGACATTGCATACA+AGG 0.466273 1_1:-54024119 Msa0028900:intron
CTATATGTCTTCAGAAAAGT+AGG 0.473495 1_1:-54023868 Msa0028900:intron
AGAGAGCTTTAGAGTGACAT+AGG 0.473657 1_1:+54024170 None:intergenic
ACCAAAAGTGAACTGGCATC+AGG 0.479918 1_1:+54022763 None:intergenic
AAGAGGAGTGTGCAGAAAGA+AGG 0.485037 1_1:+54024214 None:intergenic
TGGTGTTGTTGGAGAGAAAG+AGG 0.488481 1_1:+54024278 None:intergenic
GCTATAGTTAACTCTGATGT+TGG 0.492221 1_1:-54022348 Msa0028900:CDS
TGTGCAGAAAGAAGGGCTTT+GGG 0.498070 1_1:+54024222 None:intergenic
TGGCGAGACCAAAAGTGAAC+TGG 0.501357 1_1:+54022756 None:intergenic
GTGTCTAAACAAGTTGAAGA+AGG 0.505883 1_1:-54020725 Msa0028900:CDS
ATGTCAACAACCCTTTAGAA+AGG 0.507262 1_1:+54024130 None:intergenic
TTGTGTTCTTGTCTTTGTTG+TGG 0.510736 1_1:+54024323 None:intergenic
ATAGGTTGAAGAGCGTTTGA+TGG 0.516882 1_1:+54024188 None:intergenic
TCTCGCCATATGACAAATCA+AGG 0.529141 1_1:-54022741 Msa0028900:intron
TATGTCACTCTAAAGCTCTC+TGG 0.534466 1_1:-54024168 Msa0028900:CDS
AGAGGAGTGTGCAGAAAGAA+GGG 0.537281 1_1:+54024215 None:intergenic
GACTGATGATTATATAAAGA+AGG 0.541481 1_1:-54019812 Msa0028900:CDS
CCTCTACAAACAGAAAGAAA+AGG 0.543613 1_1:-54019782 Msa0028900:intron
TGTCAACAACCCTTTAGAAA+GGG 0.566235 1_1:+54024131 None:intergenic
AGGAGTGCTTATTTGAGCAA+TGG 0.572944 1_1:+54022783 None:intergenic
GGGCTTTGGGAACAATTGGA+AGG 0.573894 1_1:+54024235 None:intergenic
GTCTATGCTTGACAAAATTG+AGG 0.583206 1_1:-54023780 Msa0028900:intron
CTCAGTTGACATCTGATAGA+CGG 0.584774 1_1:-54022281 Msa0028900:CDS
ATGTCTTCAGAAAAGTAGGA+TGG 0.586348 1_1:-54023864 Msa0028900:intron
TGTCTAAACAAGTTGAAGAA+GGG 0.590313 1_1:-54020724 Msa0028900:CDS
TAAACAAGTTGAAGAAGGGA+AGG 0.590688 1_1:-54020720 Msa0028900:intron
GTCTATCAGATGTCAACTGA+GGG 0.592082 1_1:+54022283 None:intergenic
ACCCAGAAAGGGATTTGTGA+GGG 0.603850 1_1:-54024012 Msa0028900:intron
ATAACGATGGAGAAGTGATA+CGG 0.614514 1_1:-54022314 Msa0028900:CDS
ATTTCAGTTCTATAAGAACT+GGG 0.614614 1_1:-54023814 Msa0028900:CDS
ACAAGGCGTAGAGCATCTCA+TGG 0.646072 1_1:-54024304 Msa0028900:exon
CGTCTATCAGATGTCAACTG+AGG 0.647000 1_1:+54022282 None:intergenic
GTTGACATCTGATAGACGGA+AGG 0.650277 1_1:-54022277 Msa0028900:intron
TACCCAGAAAGGGATTTGTG+AGG 0.662137 1_1:-54024013 Msa0028900:intron
ACAACAAAGACAAGAACACA+AGG 0.687493 1_1:-54024321 Msa0028900:five_prime_UTR
GGTATGACTCCCAATAACGA+TGG 0.693482 1_1:-54022327 Msa0028900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTTTTAGAGAAT+CGG - chr1_1:54019581-54019600 Msa0028900:intron 10.0%
!!! TTTTGATGTAAAAATTATAT+TGG + chr1_1:54023520-54023539 None:intergenic 10.0%
!!! AATTAATAGAGTGATAATTT+TGG + chr1_1:54018362-54018381 None:intergenic 15.0%
!!! TTTTTATGTATATATGAATG+TGG - chr1_1:54018545-54018564 Msa0028900:intron 15.0%
!!! TTTTATGTATATATGAATGT+GGG - chr1_1:54018546-54018565 Msa0028900:intron 15.0%
!!! ATTTTAATTTGTTGTTCTAA+AGG - chr1_1:54018768-54018787 Msa0028900:intron 15.0%
!! TTATACTAAATAGTATATCA+AGG + chr1_1:54018993-54019012 None:intergenic 15.0%
!! AAAAGAAAAAGTTATCAATT+TGG + chr1_1:54019457-54019476 None:intergenic 15.0%
!! AAAAATAAAACTAAAAAGTG+TGG + chr1_1:54019571-54019590 None:intergenic 15.0%
!! AACTTAAAAGAATATAGAAA+AGG - chr1_1:54021437-54021456 Msa0028900:intron 15.0%
!! TGAATTAACTATTTACTTAT+TGG - chr1_1:54022806-54022825 Msa0028900:CDS 15.0%
!!! ATGAATAATTTAATTTTGCT+AGG + chr1_1:54023813-54023832 None:intergenic 15.0%
!! AAATCACTAGAAATAAATTT+GGG + chr1_1:54023870-54023889 None:intergenic 15.0%
!! AAAATCACTAGAAATAAATT+TGG + chr1_1:54023871-54023890 None:intergenic 15.0%
!!! GATTGGTTCTTATTATAATT+TGG - chr1_1:54018405-54018424 Msa0028900:intron 20.0%
!! TTTATGTATATATGAATGTG+GGG - chr1_1:54018547-54018566 Msa0028900:intron 20.0%
!!! TTTAAGTGTTTGTTAAATAG+TGG - chr1_1:54018920-54018939 Msa0028900:intron 20.0%
!! CTATTATTGTTTACTAGTAA+CGG + chr1_1:54019229-54019248 None:intergenic 20.0%
!!! AACAAATTCTGAGAAAATTA+CGG - chr1_1:54019323-54019342 Msa0028900:intron 20.0%
!!! GATAACTTTTTCTTTTATTG+TGG - chr1_1:54019461-54019480 Msa0028900:intron 20.0%
!!! AATATTGATTTTTAGCTTGA+AGG - chr1_1:54020071-54020090 Msa0028900:intron 20.0%
!! ACACACTTGAATAATTTAAA+TGG - chr1_1:54020375-54020394 Msa0028900:intron 20.0%
!! TTTAACAACGATATATACAA+AGG - chr1_1:54020419-54020438 Msa0028900:intron 20.0%
!! TTAACAACGATATATACAAA+GGG - chr1_1:54020420-54020439 Msa0028900:intron 20.0%
!! ATTTCTATACATTAAGTCTT+TGG - chr1_1:54020703-54020722 Msa0028900:intron 20.0%
!! ATTTATACAAGAAAGACAAT+AGG - chr1_1:54021360-54021379 Msa0028900:intron 20.0%
!! TTAGTTATACATGAATTATG+TGG - chr1_1:54021600-54021619 Msa0028900:intron 20.0%
!!! TTTATTCTAGAAGCATATTA+TGG + chr1_1:54022014-54022033 None:intergenic 20.0%
!! ATTCACCAATAAAAACAAAA+GGG + chr1_1:54022381-54022400 None:intergenic 20.0%
!!! TTTTGTTTTTATTGGTGAAT+GGG - chr1_1:54022381-54022400 Msa0028900:intron 20.0%
!!! TTGTTGTTGTATTTCATTAT+TGG - chr1_1:54022552-54022571 Msa0028900:intron 20.0%
!!! TTCACAAAACTATTTTTCTA+TGG - chr1_1:54022776-54022795 Msa0028900:CDS 20.0%
!! TATTTCACAATTTATTTGAG+AGG + chr1_1:54022926-54022945 None:intergenic 20.0%
!!! ACAAGATTCTTTTAGTTTTT+TGG - chr1_1:54022997-54023016 Msa0028900:intron 20.0%
!!! CAAGATTCTTTTAGTTTTTT+GGG - chr1_1:54022998-54023017 Msa0028900:intron 20.0%
!!! AAGATTCTTTTAGTTTTTTG+GGG - chr1_1:54022999-54023018 Msa0028900:intron 20.0%
!! TTACACATTTAGATTAACTT+TGG - chr1_1:54023208-54023227 Msa0028900:intron 20.0%
!! TATCAACAAACAAGAAATTA+TGG - chr1_1:54023763-54023782 Msa0028900:intron 20.0%
!!! TTTTGTACGTATGTATATTA+AGG - chr1_1:54023888-54023907 Msa0028900:intron 20.0%
!! TTTGTACGTATGTATATTAA+GGG - chr1_1:54023889-54023908 Msa0028900:intron 20.0%
!!! AGATTACTTTTTTGTATCAA+AGG + chr1_1:54023963-54023982 None:intergenic 20.0%
!! GCAACAAAAAAAAAAAAACT+TGG + chr1_1:54024029-54024048 None:intergenic 20.0%
!!! GCATTTGTTTATTTGTTATA+CGG - chr1_1:54024079-54024098 Msa0028900:intron 20.0%
!!! TATGCTTTTTCAAATTGAAA+AGG - chr1_1:54024125-54024144 Msa0028900:CDS 20.0%
!!! ACTTGTTAAACAAAACAAAA+TGG + chr1_1:54024301-54024320 None:intergenic 20.0%
!!! TTTTTGAAAAATACCCAGAA+AGG - chr1_1:54018429-54018448 Msa0028900:intron 25.0%
!!! TTTTGAAAAATACCCAGAAA+GGG - chr1_1:54018430-54018449 Msa0028900:intron 25.0%
! AATTTCAGTTCTATAAGAAC+TGG - chr1_1:54018638-54018657 Msa0028900:intron 25.0%
! ATTTCAGTTCTATAAGAACT+GGG - chr1_1:54018639-54018658 Msa0028900:intron 25.0%
! TTACTTCATTTCACTTGATT+TGG - chr1_1:54018892-54018911 Msa0028900:intron 25.0%
! CGTTACTAGTAAACAATAAT+AGG - chr1_1:54019227-54019246 Msa0028900:intron 25.0%
! ACAATAATAGGACAAAACTT+AGG - chr1_1:54019239-54019258 Msa0028900:intron 25.0%
! TTAAACCAGAAAGAATGAAA+TGG - chr1_1:54019756-54019775 Msa0028900:intron 25.0%
!!! TGTTGAAGAATGTCTTATTT+GGG + chr1_1:54019962-54019981 None:intergenic 25.0%
!! TTGTTGAAGAATGTCTTATT+TGG + chr1_1:54019963-54019982 None:intergenic 25.0%
! TTACCAAAGAAAAACCTTAT+TGG - chr1_1:54020857-54020876 Msa0028900:intron 25.0%
! TACCAAAGAAAAACCTTATT+GGG - chr1_1:54020858-54020877 Msa0028900:intron 25.0%
!!! ATTTGGTAATGAAAGTAAAG+TGG - chr1_1:54021098-54021117 Msa0028900:intron 25.0%
!!! ATGTTTCCAGTTTTTAAGAT+GGG - chr1_1:54021210-54021229 Msa0028900:intron 25.0%
! ACAAAAACAATCAATGAGAA+AGG - chr1_1:54021487-54021506 Msa0028900:intron 25.0%
! CAAAAACAATCAATGAGAAA+GGG - chr1_1:54021488-54021507 Msa0028900:intron 25.0%
! AAAAACAATCAATGAGAAAG+GGG - chr1_1:54021489-54021508 Msa0028900:intron 25.0%
!! AAATTCCAACAGAATTGTTT+TGG - chr1_1:54021537-54021556 Msa0028900:intron 25.0%
! AATGACATGGTTTCATAAAA+AGG + chr1_1:54021573-54021592 None:intergenic 25.0%
!! ATGAAACCATGTCATTTAAA+TGG - chr1_1:54021577-54021596 Msa0028900:intron 25.0%
! AACTAACCATTTAAATGACA+TGG + chr1_1:54021586-54021605 None:intergenic 25.0%
!! TATGTTTTGTCATAATGAAC+TGG - chr1_1:54021780-54021799 Msa0028900:intron 25.0%
!!! TGCTTCTAGAATAAATGTTT+TGG - chr1_1:54022019-54022038 Msa0028900:intron 25.0%
! AAGTTGTTTGTAACTTTCTT+TGG - chr1_1:54022050-54022069 Msa0028900:intron 25.0%
! AGCTTATGAAAAACTTGAAA+AGG - chr1_1:54022138-54022157 Msa0028900:intron 25.0%
! ACAAGGAATAAATTACTGAA+GGG + chr1_1:54022200-54022219 None:intergenic 25.0%
!!! GTGATTAATGAAAGGTATTA+CGG + chr1_1:54022226-54022245 None:intergenic 25.0%
! CATTCACCAATAAAAACAAA+AGG + chr1_1:54022382-54022401 None:intergenic 25.0%
!!! CTTTTGTTTTTATTGGTGAA+TGG - chr1_1:54022380-54022399 Msa0028900:intron 25.0%
! TGTATTTCATTATTGGTCAA+TGG - chr1_1:54022559-54022578 Msa0028900:intron 25.0%
! GACTGATGATTATATAAAGA+AGG - chr1_1:54022641-54022660 Msa0028900:intron 25.0%
! TAACAGATAAACATATCAAG+TGG + chr1_1:54022709-54022728 None:intergenic 25.0%
! ATTAATTAGATGCTCAAACA+TGG - chr1_1:54022747-54022766 Msa0028900:CDS 25.0%
! GTAAATAGTTAATTCAAACC+AGG + chr1_1:54022802-54022821 None:intergenic 25.0%
!!! AGATTCTTTTAGTTTTTTGG+GGG - chr1_1:54023000-54023019 Msa0028900:intron 25.0%
!! TATTAGATTTAGAACCGTAT+TGG + chr1_1:54023048-54023067 None:intergenic 25.0%
! AATGATGTTTCATTTGAACA+TGG - chr1_1:54023152-54023171 Msa0028900:intron 25.0%
! ATTCTTCAAAATTCAAAGAC+TGG + chr1_1:54023303-54023322 None:intergenic 25.0%
! AAAAATTATATTGGAAGCCT+TGG + chr1_1:54023511-54023530 None:intergenic 25.0%
! TAAACATATAGCATTTCATG+TGG + chr1_1:54023588-54023607 None:intergenic 25.0%
! AACAAACAAGAAATTATGGT+TGG - chr1_1:54023767-54023786 Msa0028900:intron 25.0%
! AATGCATCAATATTCAAACT+TGG + chr1_1:54024064-54024083 None:intergenic 25.0%
! AGATCCTTATGATTTCTATT+GGG - chr1_1:54024252-54024271 Msa0028900:CDS 25.0%
!! TTAACAAGTTTATTTAGCTC+AGG - chr1_1:54024312-54024331 Msa0028900:five_prime_UTR 25.0%
!!! AATTGGAAGGTTTTGAAAGA+TGG + chr1_1:54018208-54018227 None:intergenic 30.0%
TTCTGAACTACTTCATTGAT+TGG - chr1_1:54018388-54018407 Msa0028900:intron 30.0%
CTATATGTCTTCAGAAAAGT+AGG - chr1_1:54018585-54018604 Msa0028900:intron 30.0%
AAAGAACTCTTGACAATGTT+AGG - chr1_1:54018612-54018631 Msa0028900:intron 30.0%
! TCAATTTTGTCAAGCATAGA+CGG + chr1_1:54018674-54018693 None:intergenic 30.0%
!! TGTTCTAAAGGTAGATCAAT+TGG - chr1_1:54018780-54018799 Msa0028900:intron 30.0%
!! TCATTTCACTTGATTTGGAT+TGG - chr1_1:54018897-54018916 Msa0028900:intron 30.0%
TACAAACAGTTGTCAAATAG+CGG - chr1_1:54019096-54019115 Msa0028900:intron 30.0%
TTACGGATTTGAAGAAATCA+TGG - chr1_1:54019340-54019359 Msa0028900:intron 30.0%
TACGGATTTGAAGAAATCAT+GGG - chr1_1:54019341-54019360 Msa0028900:intron 30.0%
GAACAACACAAAAATACCTA+AGG - chr1_1:54019387-54019406 Msa0028900:intron 30.0%
AATCGCATATACTTACACAA+TGG - chr1_1:54019487-54019506 Msa0028900:intron 30.0%
! GAGCTGTTTCATAACATTAT+AGG - chr1_1:54019614-54019633 Msa0028900:intron 30.0%
CTGTTTCATAACATTATAGG+TGG - chr1_1:54019617-54019636 Msa0028900:intron 30.0%
ACATTATAGGTGGAATACTA+TGG - chr1_1:54019627-54019646 Msa0028900:intron 30.0%
!! ACATACCTTGATTTGTCATA+TGG + chr1_1:54019720-54019739 None:intergenic 30.0%
CTTATCCATTTCATTCTTTC+TGG + chr1_1:54019764-54019783 None:intergenic 30.0%
!! CTTCTATTCTTTTTCATGTG+TGG - chr1_1:54019820-54019839 Msa0028900:CDS 30.0%
ACTAATATACACAACTCAAC+GGG + chr1_1:54019904-54019923 None:intergenic 30.0%
GACTAATATACACAACTCAA+CGG + chr1_1:54019905-54019924 None:intergenic 30.0%
AGTATTTGTATCATTCCGTA+CGG - chr1_1:54019935-54019954 Msa0028900:intron 30.0%
TGTGATTAAATGTGTGCATA+TGG - chr1_1:54020006-54020025 Msa0028900:intron 30.0%
! TGCAGTGTCTAGATTATTTT+TGG - chr1_1:54020221-54020240 Msa0028900:intron 30.0%
CTGATTCAAAGTAATATTGC+TGG - chr1_1:54020294-54020313 Msa0028900:intron 30.0%
TTCAAAGTAATATTGCTGGT+TGG - chr1_1:54020298-54020317 Msa0028900:intron 30.0%
! TGTTTTGCTACTAATCTTGA+GGG + chr1_1:54020461-54020480 None:intergenic 30.0%
!! TTGTTTTGCTACTAATCTTG+AGG + chr1_1:54020462-54020481 None:intergenic 30.0%
ATCTTCAATAAACCCTTACA+AGG + chr1_1:54020600-54020619 None:intergenic 30.0%
TTAGAGAAAAATATCCTTCC+AGG + chr1_1:54020669-54020688 None:intergenic 30.0%
!! ACATTAAGTCTTTGGTTTGA+AGG - chr1_1:54020711-54020730 Msa0028900:intron 30.0%
AGACAAATAGTAGAAGTTTC+AGG - chr1_1:54020823-54020842 Msa0028900:intron 30.0%
TTTATTTGGAAACCTATGCA+TGG - chr1_1:54020994-54021013 Msa0028900:intron 30.0%
!!! GACAATGTTTTTAAGTGTTC+CGG - chr1_1:54021020-54021039 Msa0028900:intron 30.0%
ACCAAATCTCATTGATACAA+GGG + chr1_1:54021085-54021104 None:intergenic 30.0%
TACCAAATCTCATTGATACA+AGG + chr1_1:54021086-54021105 None:intergenic 30.0%
!! CATGTTTCCAGTTTTTAAGA+TGG - chr1_1:54021209-54021228 Msa0028900:intron 30.0%
AAAACAATCAATGAGAAAGG+GGG - chr1_1:54021490-54021509 Msa0028900:intron 30.0%
TGATACCAAAACAATTCTGT+TGG + chr1_1:54021545-54021564 None:intergenic 30.0%
TGAATGTCTAAACGAATATG+TGG - chr1_1:54021630-54021649 Msa0028900:intron 30.0%
!!! ATTTTTTGTTTCTCCTTTCC+AGG - chr1_1:54021691-54021710 Msa0028900:intron 30.0%
! TGTCTAAACAAGTTGAAGAA+GGG - chr1_1:54021729-54021748 Msa0028900:intron 30.0%
! TCTTGTTTATTGCCAATTTG+AGG - chr1_1:54021804-54021823 Msa0028900:intron 30.0%
CTTGTTTATTGCCAATTTGA+GGG - chr1_1:54021805-54021824 Msa0028900:intron 30.0%
TAGCAAAGAAATAAGTTCCA+AGG + chr1_1:54021840-54021859 None:intergenic 30.0%
GAAAGAAAGGTAAACAATGA+AGG + chr1_1:54022171-54022190 None:intergenic 30.0%
GACAAGGAATAAATTACTGA+AGG + chr1_1:54022201-54022220 None:intergenic 30.0%
TACCTTTCATTAATCACTGT+TGG - chr1_1:54022229-54022248 Msa0028900:intron 30.0%
TTCCAACAGTGATTAATGAA+AGG + chr1_1:54022234-54022253 None:intergenic 30.0%
CAATAAAAACAAAAGGGAGA+TGG + chr1_1:54022375-54022394 None:intergenic 30.0%
!!! CATCTCCCTTTTGTTTTTAT+TGG - chr1_1:54022373-54022392 Msa0028900:intron 30.0%
TGGGACAATATACTGTAAAA+TGG - chr1_1:54022400-54022419 Msa0028900:intron 30.0%
GGGACAATATACTGTAAAAT+GGG - chr1_1:54022401-54022420 Msa0028900:intron 30.0%
ACAACAACAAATTATCCTCA+CGG + chr1_1:54022542-54022561 None:intergenic 30.0%
! CTTTTCTTTCTGTTTGTAGA+GGG + chr1_1:54022673-54022692 None:intergenic 30.0%
!! AAAACTATTTTTCTATGGCC+TGG - chr1_1:54022781-54022800 Msa0028900:CDS 30.0%
!!! GATTCTTTTAGTTTTTTGGG+GGG - chr1_1:54023001-54023020 Msa0028900:intron 30.0%
ACTTTCTATGCATTATGTTC+TGG - chr1_1:54023105-54023124 Msa0028900:intron 30.0%
TTCATTTGAACATGGTATAG+TGG - chr1_1:54023160-54023179 Msa0028900:intron 30.0%
AAATGTGTAAATGAATCGAG+AGG + chr1_1:54023198-54023217 None:intergenic 30.0%
TTGTAATGCATCAGTCAAAA+AGG - chr1_1:54023343-54023362 Msa0028900:intron 30.0%
ATATGCCACATAAAATTGTG+GGG + chr1_1:54023463-54023482 None:intergenic 30.0%
GATATGCCACATAAAATTGT+GGG + chr1_1:54023464-54023483 None:intergenic 30.0%
TGATATGCCACATAAAATTG+TGG + chr1_1:54023465-54023484 None:intergenic 30.0%
ATGTCGCAAAATTTAATGGA+GGG - chr1_1:54023619-54023638 Msa0028900:intron 30.0%
TACTAACACGTATCAATTTC+AGG - chr1_1:54023649-54023668 Msa0028900:intron 30.0%
! CGAAGATTTATATCCTTTTG+TGG - chr1_1:54023735-54023754 Msa0028900:intron 30.0%
! GATTTATATCCTTTTGTGGA+TGG - chr1_1:54023739-54023758 Msa0028900:intron 30.0%
AATTGAGTTCTATCTAGAGA+AGG - chr1_1:54023984-54024003 Msa0028900:CDS 30.0%
GAGATCCTTATGATTTCTAT+TGG - chr1_1:54024251-54024270 Msa0028900:CDS 30.0%
TACACCCAATAGAAATCATA+AGG + chr1_1:54024259-54024278 None:intergenic 30.0%
TTGTGTTCTTGTCTTTGTTG+TGG + chr1_1:54018133-54018152 None:intergenic 35.0%
ACAACAAAGACAAGAACACA+AGG - chr1_1:54018132-54018151 Msa0028900:intron 35.0%
!!! GAAGGTTTTGAAAGATGGAA+CGG + chr1_1:54018203-54018222 None:intergenic 35.0%
! TGTCAACAACCCTTTAGAAA+GGG + chr1_1:54018325-54018344 None:intergenic 35.0%
! ATGTCAACAACCCTTTAGAA+AGG + chr1_1:54018326-54018345 None:intergenic 35.0%
ATGTCTTCAGAAAAGTAGGA+TGG - chr1_1:54018589-54018608 Msa0028900:intron 35.0%
! AATTTTGTCAAGCATAGACG+GGG + chr1_1:54018672-54018691 None:intergenic 35.0%
! CAATTTTGTCAAGCATAGAC+GGG + chr1_1:54018673-54018692 None:intergenic 35.0%
GTCTATGCTTGACAAAATTG+AGG - chr1_1:54018673-54018692 Msa0028900:intron 35.0%
ATATCAAGGAACAATAGCGA+TGG + chr1_1:54018979-54018998 None:intergenic 35.0%
! ACATTGTCAATTGTGGATTG+CGG + chr1_1:54019158-54019177 None:intergenic 35.0%
CCAATCAACATTGTCAATTG+TGG + chr1_1:54019165-54019184 None:intergenic 35.0%
CCACAATTGACAATGTTGAT+TGG - chr1_1:54019162-54019181 Msa0028900:intron 35.0%
AAACTTAGGTGCATTTCCTT+AGG - chr1_1:54019253-54019272 Msa0028900:intron 35.0%
ATGACAATTGAATGTCCCAT+AGG + chr1_1:54019420-54019439 None:intergenic 35.0%
TTATGAAACAGCTCATCTAC+AGG + chr1_1:54019608-54019627 None:intergenic 35.0%
! CATCCTCGTTATGATTTGTA+CGG - chr1_1:54019843-54019862 Msa0028900:intron 35.0%
CTAATATACACAACTCAACG+GGG + chr1_1:54019903-54019922 None:intergenic 35.0%
AATAATTCTGAGTGAGCTCT+TGG - chr1_1:54020043-54020062 Msa0028900:intron 35.0%
GCTATAGTTAACTCTGATGT+TGG - chr1_1:54020105-54020124 Msa0028900:intron 35.0%
ATCACTTCTCCATCGTTATT+GGG + chr1_1:54020138-54020157 None:intergenic 35.0%
TATCACTTCTCCATCGTTAT+TGG + chr1_1:54020139-54020158 None:intergenic 35.0%
ATAACGATGGAGAAGTGATA+CGG - chr1_1:54020139-54020158 Msa0028900:intron 35.0%
CAGAAAAGAAGAAAAGTCAC+AGG + chr1_1:54020253-54020272 None:intergenic 35.0%
! AGCCCAATAAGGTTTTTCTT+TGG + chr1_1:54020863-54020882 None:intergenic 35.0%
ATTCTCTACCAGTGAATACA+GGG + chr1_1:54020905-54020924 None:intergenic 35.0%
TATTCTCTACCAGTGAATAC+AGG + chr1_1:54020906-54020925 None:intergenic 35.0%
!!! ACTGCATTGGCAGTTTTATT+TGG - chr1_1:54020980-54020999 Msa0028900:intron 35.0%
AACATTGTCATTCCATGCAT+AGG + chr1_1:54021009-54021028 None:intergenic 35.0%
GTTCTCATTGTAAACTAGAC+CGG + chr1_1:54021042-54021061 None:intergenic 35.0%
AAATCTCATTGATACAAGGG+TGG + chr1_1:54021082-54021101 None:intergenic 35.0%
ACCCTTGTATCAATGAGATT+TGG - chr1_1:54021081-54021100 Msa0028900:intron 35.0%
! CAAGTTTTCAGTCGATTGTT+AGG + chr1_1:54021141-54021160 None:intergenic 35.0%
!!! TTCCAGTTTTTAAGATGGGT+AGG - chr1_1:54021214-54021233 Msa0028900:intron 35.0%
!!! TCCAGTTTTTAAGATGGGTA+GGG - chr1_1:54021215-54021234 Msa0028900:intron 35.0%
AGTTTCCATAGAAAGTTCAG+CGG + chr1_1:54021421-54021440 None:intergenic 35.0%
AAACAATCAATGAGAAAGGG+GGG - chr1_1:54021491-54021510 Msa0028900:intron 35.0%
AATTCTGTTGGAATTTGACC+TGG + chr1_1:54021533-54021552 None:intergenic 35.0%
ATCTTTGTTAGTTCCTGGAA+AGG + chr1_1:54021707-54021726 None:intergenic 35.0%
ACACTATCTTTGTTAGTTCC+TGG + chr1_1:54021712-54021731 None:intergenic 35.0%
! GTGTCTAAACAAGTTGAAGA+AGG - chr1_1:54021728-54021747 Msa0028900:intron 35.0%
! TAAACAAGTTGAAGAAGGGA+AGG - chr1_1:54021733-54021752 Msa0028900:intron 35.0%
TAACTTTCTTTGGACTGCTT+TGG - chr1_1:54022060-54022079 Msa0028900:intron 35.0%
TGAAGGGAGTTAAGAAAGAA+AGG + chr1_1:54022184-54022203 None:intergenic 35.0%
GTAACTTGATACACTCATGT+AGG - chr1_1:54022316-54022335 Msa0028900:CDS 35.0%
TGTTTATTGCAACTTGACGT+TGG + chr1_1:54022439-54022458 None:intergenic 35.0%
GAAAATTCACACTGATGACT+AGG + chr1_1:54022520-54022539 None:intergenic 35.0%
! CCTTTTCTTTCTGTTTGTAG+AGG + chr1_1:54022674-54022693 None:intergenic 35.0%
CCTCTACAAACAGAAAGAAA+AGG - chr1_1:54022671-54022690 Msa0028900:intron 35.0%
AACATGGTATAGTGGCTAAA+AGG - chr1_1:54023168-54023187 Msa0028900:intron 35.0%
TCAAATCTCCATCAAGTCAA+AGG + chr1_1:54023236-54023255 None:intergenic 35.0%
TGATGGAGATTTGAGTGAAT+AGG - chr1_1:54023242-54023261 Msa0028900:intron 35.0%
TGCATTTAATGTCAACTCCA+AGG - chr1_1:54023491-54023510 Msa0028900:intron 35.0%
TAGTGATGTGACATTGATGT+GGG - chr1_1:54023560-54023579 Msa0028900:intron 35.0%
TGCCATGTCGCAAAATTTAA+TGG - chr1_1:54023615-54023634 Msa0028900:intron 35.0%
! CTCCATTAAATTTTGCGACA+TGG + chr1_1:54023620-54023639 None:intergenic 35.0%
CATGTCGCAAAATTTAATGG+AGG - chr1_1:54023618-54023637 Msa0028900:intron 35.0%
TGTTGATATCCATCCACAAA+AGG + chr1_1:54023751-54023770 None:intergenic 35.0%
TTTCTTCACAGTTGCATCAT+TGG - chr1_1:54024170-54024189 Msa0028900:CDS 35.0%
AAGTAACATTTCTACGCTAC+AGG + chr1_1:54024211-54024230 None:intergenic 35.0%
! TTCTGTGTTTTCAGCACATA+TGG - chr1_1:54024337-54024356 Msa0028900:five_prime_UTR 35.0%
! TCTGTGTTTTCAGCACATAT+GGG - chr1_1:54024338-54024357 Msa0028900:five_prime_UTR 35.0%
!! TTTTGAAAGATGGAACGGAG+TGG + chr1_1:54018198-54018217 None:intergenic 40.0%
!! ATAGGTTGAAGAGCGTTTGA+TGG + chr1_1:54018268-54018287 None:intergenic 40.0%
!! AGAGAGCTTTAGAGTGACAT+AGG + chr1_1:54018286-54018305 None:intergenic 40.0%
!! TATGTCACTCTAAAGCTCTC+TGG - chr1_1:54018285-54018304 Msa0028900:intron 40.0%
GGTTGTTGACATTGCATACA+AGG - chr1_1:54018334-54018353 Msa0028900:intron 40.0%
! TTGTGGATTGCGGAAAATTG+TGG + chr1_1:54019148-54019167 None:intergenic 40.0%
CTAGTAACGGTAAAGAGCAA+TGG + chr1_1:54019216-54019235 None:intergenic 40.0%
ACAACGCGAAAAAACACCTA+AGG + chr1_1:54019272-54019291 None:intergenic 40.0%
GGATTTGAAGAAATCATGGG+TGG - chr1_1:54019344-54019363 Msa0028900:intron 40.0%
TACCTAAGGAAATGCACCTA+TGG - chr1_1:54019401-54019420 Msa0028900:intron 40.0%
ACCTAAGGAAATGCACCTAT+GGG - chr1_1:54019402-54019421 Msa0028900:intron 40.0%
!! AGGAGTGCTTATTTGAGCAA+TGG + chr1_1:54019673-54019692 None:intergenic 40.0%
TCTCGCCATATGACAAATCA+AGG - chr1_1:54019712-54019731 Msa0028900:intron 40.0%
GAACCGTACAAATCATAACG+AGG + chr1_1:54019849-54019868 None:intergenic 40.0%
!! ATGTCTTATTTGGGACCGTA+CGG + chr1_1:54019953-54019972 None:intergenic 40.0%
GTCTATCAGATGTCAACTGA+GGG + chr1_1:54020173-54020192 None:intergenic 40.0%
CTCAGTTGACATCTGATAGA+CGG - chr1_1:54020172-54020191 Msa0028900:CDS 40.0%
AGCTATCTGAGTTCCTTGTA+AGG - chr1_1:54020584-54020603 Msa0028900:intron 40.0%
GCTATCTGAGTTCCTTGTAA+GGG - chr1_1:54020585-54020604 Msa0028900:intron 40.0%
TAAATCCTAGTTGCCAGAGT+TGG + chr1_1:54020795-54020814 None:intergenic 40.0%
! AAGGTATTCCCTGTATTCAC+TGG - chr1_1:54020894-54020913 Msa0028900:intron 40.0%
AGATGATATCGCCTTAGACT+TGG - chr1_1:54020925-54020944 Msa0028900:intron 40.0%
TGAACAGAAGACCAAGTCTA+AGG + chr1_1:54020939-54020958 None:intergenic 40.0%
CCAATGCAGTATAGTCTTTG+GGG + chr1_1:54020970-54020989 None:intergenic 40.0%
GCCAATGCAGTATAGTCTTT+GGG + chr1_1:54020971-54020990 None:intergenic 40.0%
TGCCAATGCAGTATAGTCTT+TGG + chr1_1:54020972-54020991 None:intergenic 40.0%
TCCCTACCCATCTTAAAAAC+TGG + chr1_1:54021219-54021238 None:intergenic 40.0%
!! GTGAAGACAAGTACTGGTAA+TGG - chr1_1:54021259-54021278 Msa0028900:intron 40.0%
! ATTTTGCTCCTAACCTTGAG+GGG + chr1_1:54021392-54021411 None:intergenic 40.0%
! GATTTTGCTCCTAACCTTGA+GGG + chr1_1:54021393-54021412 None:intergenic 40.0%
CTCAAGGTTAGGAGCAAAAT+CGG - chr1_1:54021392-54021411 Msa0028900:intron 40.0%
! GGAAAGTTTCAAGGTATTCC+AGG - chr1_1:54021512-54021531 Msa0028900:intron 40.0%
!! GAAAGGTATTACGGAAGACA+AGG + chr1_1:54022217-54022236 None:intergenic 40.0%
! CACTGTTGGAATTTTCTCAC+AGG - chr1_1:54022243-54022262 Msa0028900:intron 40.0%
AGATTTGTCTAGCGATTTGC+AGG - chr1_1:54022294-54022313 Msa0028900:CDS 40.0%
! ATCAGTGTGAATTTTCCGTG+AGG - chr1_1:54022524-54022543 Msa0028900:intron 40.0%
GGGAGAAGTTCACTGAAATT+GGG - chr1_1:54023021-54023040 Msa0028900:intron 40.0%
CACTGAAATTGGGTCCAATA+CGG - chr1_1:54023031-54023050 Msa0028900:intron 40.0%
! CACGTTAAATGAGCATTGTG+CGG - chr1_1:54023405-54023424 Msa0028900:intron 40.0%
CACATAAAATTGTGGGGATG+TGG + chr1_1:54023457-54023476 None:intergenic 40.0%
! CACATCCCCACAATTTTATG+TGG - chr1_1:54023455-54023474 Msa0028900:intron 40.0%
CTAGTGATGTGACATTGATG+TGG - chr1_1:54023559-54023578 Msa0028900:intron 40.0%
GGGAAAAACTAGAAGTGATG+AGG + chr1_1:54023850-54023869 None:intergenic 40.0%
GTAACTTCTCCCTTTCTTTC+AGG - chr1_1:54023919-54023938 Msa0028900:intron 40.0%
TCAGCAACTCCTGAAAGAAA+GGG + chr1_1:54023931-54023950 None:intergenic 40.0%
AGGTGAGTTTGCATGCAATT+TGG - chr1_1:54024145-54024164 Msa0028900:CDS 40.0%
GGTGAGTTTGCATGCAATTT+GGG - chr1_1:54024146-54024165 Msa0028900:CDS 40.0%
CATTTCTACGCTACAGGAAT+AGG + chr1_1:54024205-54024224 None:intergenic 40.0%
!! TGGTGTTGTTGGAGAGAAAG+AGG + chr1_1:54018178-54018197 None:intergenic 45.0%
!! AGAAGGGCTTTGGGAACAAT+TGG + chr1_1:54018225-54018244 None:intergenic 45.0%
TGTGCAGAAAGAAGGGCTTT+GGG + chr1_1:54018234-54018253 None:intergenic 45.0%
! AGAGGAGTGTGCAGAAAGAA+GGG + chr1_1:54018241-54018260 None:intergenic 45.0%
! AAGAGGAGTGTGCAGAAAGA+AGG + chr1_1:54018242-54018261 None:intergenic 45.0%
!! AGAGCGTTTGATGGTGAAAG+AGG + chr1_1:54018259-54018278 None:intergenic 45.0%
AGCAGACACTCCCTTTCTAA+AGG - chr1_1:54018312-54018331 Msa0028900:intron 45.0%
GCAGACACTCCCTTTCTAAA+GGG - chr1_1:54018313-54018332 Msa0028900:intron 45.0%
TACCCAGAAAGGGATTTGTG+AGG - chr1_1:54018440-54018459 Msa0028900:intron 45.0%
ACCCAGAAAGGGATTTGTGA+GGG - chr1_1:54018441-54018460 Msa0028900:intron 45.0%
AAATAGCGGCTATAGCGTAG+CGG - chr1_1:54019110-54019129 Msa0028900:intron 45.0%
TCCCATAGGTGCATTTCCTT+AGG + chr1_1:54019406-54019425 None:intergenic 45.0%
GCAATGGTCTTCAAGCTAAC+TGG + chr1_1:54019657-54019676 None:intergenic 45.0%
! TCCTGATGCCAGTTCACTTT+TGG - chr1_1:54019689-54019708 Msa0028900:intron 45.0%
ACCAAAAGTGAACTGGCATC+AGG + chr1_1:54019693-54019712 None:intergenic 45.0%
GGTATGACTCCCAATAACGA+TGG - chr1_1:54020126-54020145 Msa0028900:intron 45.0%
CGTCTATCAGATGTCAACTG+AGG + chr1_1:54020174-54020193 None:intergenic 45.0%
GTTGACATCTGATAGACGGA+AGG - chr1_1:54020176-54020195 Msa0028900:CDS 45.0%
TCTAGACACTGCAGCAACAA+TGG + chr1_1:54020214-54020233 None:intergenic 45.0%
GATGTCGAACAACTGATCCT+TGG - chr1_1:54020617-54020636 Msa0028900:intron 45.0%
!! AAAGAAGTCTTGGTGATGCC+TGG - chr1_1:54020648-54020667 Msa0028900:intron 45.0%
TCATCACAAGCGAGCTCTAT+AGG - chr1_1:54020753-54020772 Msa0028900:intron 45.0%
CTCTATAGGTGTGAAAGGTG+AGG - chr1_1:54020767-54020786 Msa0028900:intron 45.0%
CAGCTTAAGGTAGCCCAATA+AGG + chr1_1:54020874-54020893 None:intergenic 45.0%
ATTGGGCTACCTTAAGCTGA+AGG - chr1_1:54020875-54020894 Msa0028900:intron 45.0%
CAGGGAATACCTTCAGCTTA+AGG + chr1_1:54020887-54020906 None:intergenic 45.0%
CCCCAAAGACTATACTGCAT+TGG - chr1_1:54020967-54020986 Msa0028900:intron 45.0%
! CACTAACCAAGCTTTGGCAA+TGG - chr1_1:54021171-54021190 Msa0028900:intron 45.0%
AGCAGTGTGAAGACAAGTAC+TGG - chr1_1:54021253-54021272 Msa0028900:intron 45.0%
ACCTTAGACTGGAACAGTGT+CGG - chr1_1:54021304-54021323 Msa0028900:intron 45.0%
CAATAGGAACAAACCCCTCA+AGG - chr1_1:54021376-54021395 Msa0028900:intron 45.0%
! CGATTTTGCTCCTAACCTTG+AGG + chr1_1:54021394-54021413 None:intergenic 45.0%
GGTATCCGCTGAACTTTCTA+TGG - chr1_1:54021413-54021432 Msa0028900:intron 45.0%
AGAAAGGGGGGAAAGTTTCA+AGG - chr1_1:54021503-54021522 Msa0028900:intron 45.0%
GGAGAGCAAAACCCTCAAAT+TGG + chr1_1:54021819-54021838 None:intergenic 45.0%
! TTTGAGGGTTTTGCTCTCCT+TGG - chr1_1:54021820-54021839 Msa0028900:intron 45.0%
GGGGAGAAGTTCACTGAAAT+TGG - chr1_1:54023020-54023039 Msa0028900:intron 45.0%
!! CTTTGGTGCCTTTGACTTGA+TGG - chr1_1:54023225-54023244 Msa0028900:intron 45.0%
GTCCTCGAAATTGTGAGCAT+CGG - chr1_1:54023272-54023291 Msa0028900:intron 45.0%
TACCGATGCTCACAATTTCG+AGG + chr1_1:54023277-54023296 None:intergenic 45.0%
TTCCTTACCTGTTGCGGTTA+GGG - chr1_1:54023369-54023388 Msa0028900:intron 45.0%
!! GCATTGATTTGGGATCCATG+TGG + chr1_1:54023435-54023454 None:intergenic 45.0%
!! TGGGGATGTGGCATTGATTT+GGG + chr1_1:54023445-54023464 None:intergenic 45.0%
GTCAGCAACTCCTGAAAGAA+AGG + chr1_1:54023932-54023951 None:intergenic 45.0%
!! AACTATATTAAAAATATTAA+AGG - chr1_1:54020505-54020524 Msa0028900:intron 5.0%
! ACAAGGCGTAGAGCATCTCA+TGG - chr1_1:54018149-54018168 Msa0028900:intron 50.0%
!! ATGGAACGGAGTGGTGTTGT+TGG + chr1_1:54018189-54018208 None:intergenic 50.0%
!! GGGCTTTGGGAACAATTGGA+AGG + chr1_1:54018221-54018240 None:intergenic 50.0%
GTGTGCAGAAAGAAGGGCTT+TGG + chr1_1:54018235-54018254 None:intergenic 50.0%
GCCCTCACAAATCCCTTTCT+GGG + chr1_1:54018445-54018464 None:intergenic 50.0%
AGCCCTCACAAATCCCTTTC+TGG + chr1_1:54018446-54018465 None:intergenic 50.0%
TGGCGAGACCAAAAGTGAAC+TGG + chr1_1:54019700-54019719 None:intergenic 50.0%
CACTGCAGCAACAATGGAAG+TGG + chr1_1:54020208-54020227 None:intergenic 50.0%
! GACTTCTTTTGCGAGCTCCA+AGG + chr1_1:54020637-54020656 None:intergenic 50.0%
GGAGCTCGCAAAAGAAGTCT+TGG - chr1_1:54020638-54020657 Msa0028900:intron 50.0%
!! AAGTCTTGGTGATGCCTGGA+AGG - chr1_1:54020652-54020671 Msa0028900:intron 50.0%
GCGAGCTCTATAGGTGTGAA+AGG - chr1_1:54020762-54020781 Msa0028900:intron 50.0%
GAAAGGTGAGGAACCAACTC+TGG - chr1_1:54020779-54020798 Msa0028900:intron 50.0%
AGGAACCAACTCTGGCAACT+AGG - chr1_1:54020787-54020806 Msa0028900:intron 50.0%
AGTCGATTGTTAGGCACGTG+AGG + chr1_1:54021132-54021151 None:intergenic 50.0%
TGAGCGCACTAACCAAGCTT+TGG - chr1_1:54021165-54021184 Msa0028900:intron 50.0%
! TGTGTGCCATTGCCAAAGCT+TGG + chr1_1:54021180-54021199 None:intergenic 50.0%
CAGCTGCTGAAACCTTAGAC+TGG - chr1_1:54021293-54021312 Msa0028900:intron 50.0%
TCCGACACTGTTCCAGTCTA+AGG + chr1_1:54021308-54021327 None:intergenic 50.0%
! TAGACTGGAACAGTGTCGGA+TGG - chr1_1:54021308-54021327 Msa0028900:intron 50.0%
GTGTCGGATGGAGAAAAGCA+AGG - chr1_1:54021320-54021339 Msa0028900:intron 50.0%
CGGATGGAGAAAAGCAAGGT+AGG - chr1_1:54021324-54021343 Msa0028900:intron 50.0%
GGAACAAACCCCTCAAGGTT+AGG - chr1_1:54021381-54021400 Msa0028900:intron 50.0%
AGGTCCTTCCTTACCTGTTG+CGG - chr1_1:54023363-54023382 Msa0028900:intron 50.0%
CTAACCGCAACAGGTAAGGA+AGG + chr1_1:54023370-54023389 None:intergenic 50.0%
CTTCCTTACCTGTTGCGGTT+AGG - chr1_1:54023368-54023387 Msa0028900:intron 50.0%
TCCTTACCTGTTGCGGTTAG+GGG - chr1_1:54023370-54023389 Msa0028900:intron 50.0%
CATTAACCCCTAACCGCAAC+AGG + chr1_1:54023379-54023398 None:intergenic 50.0%
!! GTGGGGATGTGGCATTGATT+TGG + chr1_1:54023446-54023465 None:intergenic 50.0%
CAACTCAACGGGGAGAGAGA+GGG + chr1_1:54019893-54019912 None:intergenic 55.0%
ACAACTCAACGGGGAGAGAG+AGG + chr1_1:54019894-54019913 None:intergenic 55.0%
GCTCGCTTGTGATGATCAGC+TGG + chr1_1:54020748-54020767 None:intergenic 55.0%
GCTTTGGCAATGGCACACAG+AGG - chr1_1:54021181-54021200 Msa0028900:intron 55.0%
ACCCCTAACCGCAACAGGTA+AGG + chr1_1:54023374-54023393 None:intergenic 55.0%
GCATTGTGCGGTCTTCCACA+TGG - chr1_1:54023417-54023436 Msa0028900:intron 55.0%
GGCAATGGCACACAGAGGTG+AGG - chr1_1:54021186-54021205 Msa0028900:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 54018096 54024379 54018096 ID=Msa0028900;Name=Msa0028900
chr1_1 mRNA 54018096 54024379 54018096 ID=Msa0028900-mRNA-1;Parent=Msa0028900;Name=Msa0028900-mRNA-1;_AED=0.33;_eAED=0.33;_QI=72|0.88|0.9|1|0.88|1|10|0|273
chr1_1 exon 54018096 54018146 54018096 ID=Msa0028900-mRNA-1:exon:15998;Parent=Msa0028900-mRNA-1
chr1_1 exon 54019783 54019839 54019783 ID=Msa0028900-mRNA-1:exon:15997;Parent=Msa0028900-mRNA-1
chr1_1 exon 54020160 54020210 54020160 ID=Msa0028900-mRNA-1:exon:15996;Parent=Msa0028900-mRNA-1
chr1_1 exon 54020316 54020372 54020316 ID=Msa0028900-mRNA-1:exon:15995;Parent=Msa0028900-mRNA-1
chr1_1 exon 54020721 54020762 54020721 ID=Msa0028900-mRNA-1:exon:15994;Parent=Msa0028900-mRNA-1
chr1_1 exon 54022278 54022389 54022278 ID=Msa0028900-mRNA-1:exon:15993;Parent=Msa0028900-mRNA-1
chr1_1 exon 54022742 54022839 54022742 ID=Msa0028900-mRNA-1:exon:15992;Parent=Msa0028900-mRNA-1
chr1_1 exon 54023781 54023876 54023781 ID=Msa0028900-mRNA-1:exon:15991;Parent=Msa0028900-mRNA-1
chr1_1 exon 54023959 54024028 54023959 ID=Msa0028900-mRNA-1:exon:15990;Parent=Msa0028900-mRNA-1
chr1_1 exon 54024120 54024379 54024120 ID=Msa0028900-mRNA-1:exon:15989;Parent=Msa0028900-mRNA-1
chr1_1 five_prime_UTR 54024308 54024379 54024308 ID=Msa0028900-mRNA-1:five_prime_utr;Parent=Msa0028900-mRNA-1
chr1_1 CDS 54024120 54024307 54024120 ID=Msa0028900-mRNA-1:cds;Parent=Msa0028900-mRNA-1
chr1_1 CDS 54023959 54024028 54023959 ID=Msa0028900-mRNA-1:cds;Parent=Msa0028900-mRNA-1
chr1_1 CDS 54023781 54023876 54023781 ID=Msa0028900-mRNA-1:cds;Parent=Msa0028900-mRNA-1
chr1_1 CDS 54022742 54022839 54022742 ID=Msa0028900-mRNA-1:cds;Parent=Msa0028900-mRNA-1
chr1_1 CDS 54022278 54022389 54022278 ID=Msa0028900-mRNA-1:cds;Parent=Msa0028900-mRNA-1
chr1_1 CDS 54020721 54020762 54020721 ID=Msa0028900-mRNA-1:cds;Parent=Msa0028900-mRNA-1
chr1_1 CDS 54020316 54020372 54020316 ID=Msa0028900-mRNA-1:cds;Parent=Msa0028900-mRNA-1
chr1_1 CDS 54020160 54020210 54020160 ID=Msa0028900-mRNA-1:cds;Parent=Msa0028900-mRNA-1
chr1_1 CDS 54019783 54019839 54019783 ID=Msa0028900-mRNA-1:cds;Parent=Msa0028900-mRNA-1
chr1_1 CDS 54018096 54018146 54018096 ID=Msa0028900-mRNA-1:cds;Parent=Msa0028900-mRNA-1
Gene Sequence

>Msa0028900

ATGGCAACCTCTTTCTCTCCAACAACACCACTCCGTTCCATCTTTCAAAACCTTCCAATTGTTCCCAAAGCCCTTCTTTCTGCACACTCCTCTTTCACCATCAAACGCTCTTCAACCTATGTCACTCTAAAGCTCTCTGGCAGTAGCAGACACTCCCTTTCTAAAGGGTTGTTGACATTGCATACAAGAAAGGGATTTGTGAGGGCTGCTACTATTGAAGAAATTGAAGCTGAAAAAGCATCTATTGAGAATGATGTTAAAAGTAGGATGGAAAGAACTCTTGACAATGTTAGGACTAATTTCAGTTCTATAAGAACTGGGAGAGCAACCCCGTCTATGCTTGACAAAATTGAGGTGGAATACTATGGATCTCCAGTTAGCTTGAAGACCATTGCTCAAATAAGCACTCCTGATGCCAGTTCACTTTTGGTCTCGCCATATGACAAATCAAGCTTGAAGGCTATAGAGAAAGCTATAGTTAACTCTGATGTTGGTATGACTCCCAATAACGATGGAGAAGTGATACGGTTAAGTATCCCTCAGTTGACATCTGATAGACGGAAGGAACTAACAAAGATAGTGTCTAAACAAGTTGAAGAAGGGAAGGTGGCTTTGAGGAACATAAGAAGAGATGCTTTGAAAGCTTATGAAAAACTTGAAAAGGATAAGAAGCTCTCAGAAGATAATGTAAAAGATTTGTCTAGCGATTTGCAGAAGCTGACTGATGATTATATAAAGAAGGTTGATGCCCTCTACAAACAGAAAGAAAAGCTCAGGACTTCTGTGTTTTCAGCACATATGGGTGTTGAAGTGAAATTTTGA

Protein sequence

>Msa0028900

MATSFSPTTPLRSIFQNLPIVPKALLSAHSSFTIKRSSTYVTLKLSGSSRHSLSKGLLTLHTRKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVRTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKLRTSVFSAHMGVEVKF*