AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0180540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180540 MtrunA17_Chr1g0204761 85.750 400 38 2 1 400 1 381 0.0 699
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180540 AT4G38225.1 56.631 279 119 1 122 400 74 350 8.09e-114 337
Msa0180540 AT4G38225.3 56.631 279 119 1 122 400 74 350 1.04e-113 337
Msa0180540 AT4G38225.2 61.244 209 81 0 122 330 74 282 7.68e-92 279

Find 118 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTGCTTCAGATATTTC+TGG 0.172915 1_4:+68508879 Msa0180540:CDS
ATTTGGGGCTTTCCTATTAC+TGG 0.197579 1_4:+68507124 Msa0180540:CDS
CTTCAGATATTTCTGGTATC+TGG 0.246622 1_4:+68508886 Msa0180540:CDS
GTTTCTCTCTTTCTTCTAAA+TGG 0.249694 1_4:-68509336 None:intergenic
CAGAGTTCACTGCAGCAAAA+AGG 0.289325 1_4:+68507098 Msa0180540:intron
TGCTTCCTTTGCATCTTGAT+TGG 0.292870 1_4:-68507709 None:intergenic
CATAGTTGGTCTGTTAATAA+TGG 0.307498 1_4:+68506822 Msa0180540:exon
CTCCTCCAATTGAAAGAAAA+TGG 0.315285 1_4:-68507155 None:intergenic
CTAAATGGAAGTGAAGAATT+AGG 0.315350 1_4:-68509321 None:intergenic
CCATTCACCTGATATTCTTC+TGG 0.324871 1_4:-68508334 None:intergenic
CTAATTATGTTCACATAGAT+TGG 0.327578 1_4:+68509279 Msa0180540:three_prime_UTR
AGGTAGTTAGAATACCTATT+TGG 0.333815 1_4:+68508236 Msa0180540:intron
TCCCATTCTCGGTATGCTTC+AGG 0.340067 1_4:-68508420 None:intergenic
GTTCTAAGTCCATCATAATA+TGG 0.349942 1_4:-68508264 None:intergenic
AAGGAAGCAGTGAAAGAAAT+AGG 0.350072 1_4:+68507723 Msa0180540:CDS
ATAATATGGAATAGCCAAAT+AGG 0.353683 1_4:-68508250 None:intergenic
AGAGAGGGTCTCTACCTTAT+TGG 0.363158 1_4:-68509428 None:intergenic
TATTACTTCCTAAGCAACTA+TGG 0.363567 1_4:+68509110 Msa0180540:CDS
CAGAATTATTATTATTATCA+AGG 0.371452 1_4:-68506787 None:intergenic
TCAGGTGAATGGGATGGATT+TGG 0.376714 1_4:+68508345 Msa0180540:CDS
GCAAGTCACACTCACCAATA+AGG 0.396356 1_4:+68509414 Msa0180540:three_prime_UTR
ATGGTCTGAAACCCAGTAAT+AGG 0.399405 1_4:-68507136 None:intergenic
AGAAATATCTGAAGCAATCA+AGG 0.405236 1_4:-68508877 None:intergenic
ATACTTTGACCTCCCATTCT+CGG 0.410913 1_4:-68508431 None:intergenic
CAAAATAAAATATAAACAAT+AGG 0.411013 1_4:+68509358 Msa0180540:three_prime_UTR
TATTGGTGAGTGTGACTTGC+CGG 0.419612 1_4:-68509411 None:intergenic
TTGGCTATTCCATATTATGA+TGG 0.421139 1_4:+68508255 Msa0180540:CDS
CATAATATGTAACTTGCCTT+CGG 0.424991 1_4:-68509241 None:intergenic
GGGAGGTCAAAGTATTTGAT+TGG 0.431446 1_4:+68508439 Msa0180540:CDS
CTTACACTTCCGGTGTCTGT+AGG 0.436617 1_4:-68508939 None:intergenic
GAAGAATGACATAATAGAGT+TGG 0.438887 1_4:+68508662 Msa0180540:CDS
TCTCTATTTCTCATAAGAAA+TGG 0.439380 1_4:+68509446 Msa0180540:three_prime_UTR
TACTCAAGAACATGATCCTC+TGG 0.452071 1_4:-68508489 None:intergenic
CCAGAAGAATATCAGGTGAA+TGG 0.455183 1_4:+68508334 Msa0180540:CDS
TGTTAAAGTACTTACATAGT+TGG 0.461236 1_4:+68506808 Msa0180540:five_prime_UTR
TGCCTGAAGCATACCGAGAA+TGG 0.461809 1_4:+68508418 Msa0180540:CDS
CAATTTGCCAGAAGAATATC+AGG 0.465090 1_4:+68508327 Msa0180540:CDS
AGATATTTCTGGTATCTGGC+AGG 0.473135 1_4:+68508890 Msa0180540:CDS
CAGAAGAATATCAGGTGAAT+GGG 0.475043 1_4:+68508335 Msa0180540:CDS
ATCTTAATCTAATAATATAC+CGG 0.477135 1_4:+68509392 Msa0180540:three_prime_UTR
GTTCACATAGATTGGCTTGG+AGG 0.481417 1_4:+68509287 Msa0180540:three_prime_UTR
TATGTTCACATAGATTGGCT+TGG 0.481455 1_4:+68509284 Msa0180540:three_prime_UTR
TTTCTTTCAATTGGAGGAGG+AGG 0.483111 1_4:+68507159 Msa0180540:CDS
GGAGCAGACTTCAGTAATCA+AGG 0.484812 1_4:+68508366 Msa0180540:CDS
ATGTGAAGAGGATGGAAGAG+TGG 0.489017 1_4:-68506911 None:intergenic
TTTGGGGCTTTCCTATTACT+GGG 0.490821 1_4:+68507125 Msa0180540:CDS
AACGAACACCATAGTTGCTT+AGG 0.494963 1_4:-68509118 None:intergenic
GCCTGAAGCATACCGAGAAT+GGG 0.495903 1_4:+68508419 Msa0180540:CDS
TGGTATGGACCGTTCAGAAA+TGG 0.498581 1_4:+68508801 Msa0180540:CDS
TTCAGAAATGGTGATCAACT+TGG 0.499904 1_4:+68508813 Msa0180540:CDS
AATGCATGGAGAAGGGAAAG+TGG 0.500854 1_4:-68506869 None:intergenic
AAAGAAATAGGCGAAATTGA+TGG 0.502155 1_4:+68507735 Msa0180540:CDS
GATGGTCTGATAGGTGTAAT+GGG 0.503950 1_4:+68507753 Msa0180540:CDS
TGATGGTCTGATAGGTGTAA+TGG 0.504065 1_4:+68507752 Msa0180540:CDS
GTTCAGTTACTTCCCACTGT+TGG 0.504325 1_4:+68508519 Msa0180540:CDS
GGTGAAACTCTAACTGAAGT+AGG 0.504533 1_4:+68509157 Msa0180540:CDS
AAGAGAGGTCCTTACACTTC+CGG 0.505168 1_4:-68508949 None:intergenic
GCTTCAGGCACCACCGACTC+TGG 0.507414 1_4:-68508405 None:intergenic
ACCCGAGATTCAAAATCTTG+TGG 0.514140 1_4:-68508702 None:intergenic
AGGATCATGTTCTTGAGTAC+AGG 0.519343 1_4:+68508493 Msa0180540:CDS
TCCTCTGGATCAGCAAGAGT+GGG 0.521470 1_4:-68508474 None:intergenic
GTATTTCGTGAGCAGTGGTA+TGG 0.521766 1_4:+68508786 Msa0180540:CDS
GTGGCTCTTATGTTGCTGTA+TGG 0.522927 1_4:+68508634 Msa0180540:CDS
TGCTGCTACGGTATACAGTT+CGG 0.525686 1_4:+68508554 Msa0180540:CDS
GGCGAAATTGATGGTCTGAT+AGG 0.528076 1_4:+68507744 Msa0180540:CDS
TGTGGTAGATGTGAAGAGGA+TGG 0.531243 1_4:-68506919 None:intergenic
CAGACTTCAGTAATCAAGGC+AGG 0.538012 1_4:+68508370 Msa0180540:CDS
TTACACTTCCGGTGTCTGTA+GGG 0.540859 1_4:-68508938 None:intergenic
GGTTGAAGAATGCATGGAGA+AGG 0.544763 1_4:-68506877 None:intergenic
ATCCTCTGGATCAGCAAGAG+TGG 0.546743 1_4:-68508475 None:intergenic
TACAGCAACATAAGAGCCAC+TGG 0.547352 1_4:-68508631 None:intergenic
ATGCAGAAGTCTGTTAGAGA+TGG 0.554984 1_4:+68509076 Msa0180540:CDS
GATATTTCTGGTATCTGGCA+GGG 0.561033 1_4:+68508891 Msa0180540:CDS
CAACATAAGAGCCACTGGAT+TGG 0.561674 1_4:-68508626 None:intergenic
ATGACAAAAGTATTGAAGCT+TGG 0.562334 1_4:+68508301 Msa0180540:CDS
ACTTCCCACTGTTGGATGTG+AGG 0.571880 1_4:+68508527 Msa0180540:CDS
TGCAGCCAATCAAGATGCAA+AGG 0.577786 1_4:+68507704 Msa0180540:CDS
ACTGTATACCGTAGCAGCAT+CGG 0.577793 1_4:-68508550 None:intergenic
CCCCACTCTTGCTGATCCAG+AGG 0.577837 1_4:+68508473 Msa0180540:CDS
GCCACTGGATTGGTAAGCAA+AGG 0.579088 1_4:-68508616 None:intergenic
GAACGTGGTTGAAGAATGCA+TGG 0.579178 1_4:-68506883 None:intergenic
ATGTGAGGCCGATGCTGCTA+CGG 0.581645 1_4:+68508542 Msa0180540:CDS
CTCAAGCACTGCAAAGCCGA+AGG 0.585448 1_4:+68509225 Msa0180540:CDS
TGTATTAAATAATACAGAGA+TGG 0.591790 1_4:+68508746 Msa0180540:CDS
GATTGGCTTGGAGGATCACA+TGG 0.592889 1_4:+68509296 Msa0180540:three_prime_UTR
AGAAATGGTGATCAACTTGG+AGG 0.595278 1_4:+68508816 Msa0180540:CDS
GCCTTTGCTTACCAATCCAG+TGG 0.595522 1_4:+68508615 Msa0180540:CDS
TGGACTTAGAACTGCGCTGA+AGG 0.596135 1_4:+68508275 Msa0180540:CDS
AGAATATCAGGTGAATGGGA+TGG 0.597864 1_4:+68508339 Msa0180540:CDS
AGTTCGGATGAGAGAAAAGT+GGG 0.601050 1_4:+68508570 Msa0180540:CDS
ATTTCTTATGAGAAATAGAG+AGG 0.601680 1_4:-68509444 None:intergenic
ATGTTGAAGAGTCGTTACAT+AGG 0.601963 1_4:+68506746 None:intergenic
GTTGAAGAATGCATGGAGAA+GGG 0.602269 1_4:-68506876 None:intergenic
AAACTCTAACTGAAGTAGGA+TGG 0.603041 1_4:+68509161 Msa0180540:CDS
CAGTTCGGATGAGAGAAAAG+TGG 0.604404 1_4:+68508569 Msa0180540:CDS
GAAGAGTCGTTACATAGGAT+AGG 0.606051 1_4:+68506751 Msa0180540:five_prime_UTR
TTAGAGTATTTCGTGAGCAG+TGG 0.607973 1_4:+68508781 Msa0180540:CDS
TCGTTTGAACGAAACAAGGA+TGG 0.615348 1_4:+68509136 Msa0180540:CDS
TACATGTGGTAGATGTGAAG+AGG 0.617495 1_4:-68506923 None:intergenic
AATTGAACTGCCAGAGTCGG+TGG 0.618819 1_4:+68508395 Msa0180540:CDS
TAGAAGCGAAAGCAGAATCA+CGG 0.626937 1_4:-68508848 None:intergenic
GGAAGAGTGGAGAAAGAACG+TGG 0.632927 1_4:-68506898 None:intergenic
GACGTTTGCAGAGAAGAATG+AGG 0.633011 1_4:-68506845 None:intergenic
TCGGCCTCACATCCAACAGT+GGG 0.636312 1_4:-68508531 None:intergenic
GAAATATCTGAAGCAATCAA+GGG 0.636929 1_4:-68508876 None:intergenic
ACTGGATTGGTAAGCAAAGG+CGG 0.641472 1_4:-68508613 None:intergenic
GTGTTCGTTTGAACGAAACA+AGG 0.644440 1_4:+68509132 Msa0180540:CDS
GGTAATTGAACTGCCAGAGT+CGG 0.647523 1_4:+68508392 Msa0180540:CDS
ATCGGCCTCACATCCAACAG+TGG 0.651816 1_4:-68508532 None:intergenic
TTTCTTATGAGAAATAGAGA+GGG 0.655531 1_4:-68509443 None:intergenic
AGTTGATCACCATTTCTGAA+CGG 0.657715 1_4:-68508810 None:intergenic
AACAGTGGGAAGTAACTGAA+CGG 0.658899 1_4:-68508517 None:intergenic
AAAGTGGGCGGCGAAAGCAG+TGG 0.662083 1_4:+68508585 Msa0180540:CDS
AGACTTCAGTAATCAAGGCA+GGG 0.663114 1_4:+68508371 Msa0180540:CDS
TGAAGCATACCGAGAATGGG+AGG 0.666775 1_4:+68508422 Msa0180540:CDS
AATACAGAGATGGAGCTGCA+AGG 0.669200 1_4:+68508756 Msa0180540:CDS
CCTCTGGATCAGCAAGAGTG+GGG 0.673591 1_4:-68508473 None:intergenic
TCGGATGAGAGAAAAGTGGG+CGG 0.747971 1_4:+68508573 Msa0180540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTAATTTCCATTTTA+TGG + chr1_4:68507499-68507518 Msa0180540:intron 10.0%
!! CAAAATAAAATATAAACAAT+AGG + chr1_4:68509358-68509377 Msa0180540:three_prime_UTR 10.0%
!! CAGAATTATTATTATTATCA+AGG - chr1_4:68506790-68506809 None:intergenic 15.0%
!! AATATCTATATTCATGAAAT+TGG + chr1_4:68507894-68507913 Msa0180540:intron 15.0%
!!! ATTTTTATCAAACTTAATTG+TGG + chr1_4:68508096-68508115 Msa0180540:intron 15.0%
!! ATACATATATGAAAAACAAA+GGG - chr1_4:68508979-68508998 None:intergenic 15.0%
!! AATACATATATGAAAAACAA+AGG - chr1_4:68508980-68508999 None:intergenic 15.0%
!!! TATGTATTTTTCTGTATTAT+TGG + chr1_4:68508992-68509011 Msa0180540:intron 15.0%
!! ATCTTAATCTAATAATATAC+CGG + chr1_4:68509392-68509411 Msa0180540:three_prime_UTR 15.0%
!! AAGAATAGAAGAAAAAGAAA+GGG - chr1_4:68506961-68506980 None:intergenic 20.0%
!! AAAGAATAGAAGAAAAAGAA+AGG - chr1_4:68506962-68506981 None:intergenic 20.0%
!! AATAATATTCCCATGTATTT+AGG + chr1_4:68507183-68507202 Msa0180540:intron 20.0%
!! TTATAAGTGCTTAACTAAAT+TGG - chr1_4:68507223-68507242 None:intergenic 20.0%
!! AAATAAGGTTAAAACAGTTT+CGG + chr1_4:68507344-68507363 Msa0180540:intron 20.0%
!! TAGAAAATTAACAGCATATT+TGG - chr1_4:68507447-68507466 None:intergenic 20.0%
!! TGGAAAATGACAAATTAATT+GGG - chr1_4:68507568-68507587 None:intergenic 20.0%
!! TGTATTAAATAATACAGAGA+TGG + chr1_4:68508746-68508765 Msa0180540:CDS 20.0%
!!! GTATTATTGGTTTCATTATA+TGG + chr1_4:68509005-68509024 Msa0180540:intron 20.0%
!! TGAACATAATTAGTAAAAAC+TGG - chr1_4:68509272-68509291 None:intergenic 20.0%
!! TGTTAAAGTACTTACATAGT+TGG + chr1_4:68506808-68506827 Msa0180540:five_prime_UTR 25.0%
! ATAATTGATACCCTTCTTTA+TGG + chr1_4:68506995-68507014 Msa0180540:intron 25.0%
! AAATTCCATTCCATAAAGAA+GGG - chr1_4:68507008-68507027 None:intergenic 25.0%
! AAAATTCCATTCCATAAAGA+AGG - chr1_4:68507009-68507028 None:intergenic 25.0%
! CTAAATTGGTTATCCAAATA+GGG - chr1_4:68507209-68507228 None:intergenic 25.0%
! ACTAAATTGGTTATCCAAAT+AGG - chr1_4:68507210-68507229 None:intergenic 25.0%
!!! TGTTTTTATTCAAGCTTTCA+TGG + chr1_4:68507310-68507329 Msa0180540:intron 25.0%
! ATGGAGAGTTTATGAAAATA+AGG + chr1_4:68507329-68507348 Msa0180540:intron 25.0%
! AATAAGGTTAAAACAGTTTC+GGG + chr1_4:68507345-68507364 Msa0180540:intron 25.0%
!!! ATTGTTTTCATTGTTATTCG+TGG + chr1_4:68507470-68507489 Msa0180540:intron 25.0%
! GTGGAAAATGACAAATTAAT+TGG - chr1_4:68507569-68507588 None:intergenic 25.0%
! TGAAGCTATGAATAGTAAAT+TGG + chr1_4:68507645-68507664 Msa0180540:intron 25.0%
!! TTTAACGTTGCATATAGTTT+TGG - chr1_4:68507924-68507943 None:intergenic 25.0%
! AACTATATGCAACGTTAAAT+TGG + chr1_4:68507925-68507944 Msa0180540:intron 25.0%
!!! GTATGCAATGTTTGATTTTA+AGG + chr1_4:68508001-68508020 Msa0180540:intron 25.0%
! AAATAGTAAACTAAACACCA+AGG - chr1_4:68508076-68508095 None:intergenic 25.0%
! ATAATATGGAATAGCCAAAT+AGG - chr1_4:68508253-68508272 None:intergenic 25.0%
! CTAATTATGTTCACATAGAT+TGG + chr1_4:68509279-68509298 Msa0180540:three_prime_UTR 25.0%
! TTTCTTATGAGAAATAGAGA+GGG - chr1_4:68509446-68509465 None:intergenic 25.0%
! ATTTCTTATGAGAAATAGAG+AGG - chr1_4:68509447-68509466 None:intergenic 25.0%
!! TCTCTATTTCTCATAAGAAA+TGG + chr1_4:68509446-68509465 Msa0180540:three_prime_UTR 25.0%
! CATAGTTGGTCTGTTAATAA+TGG + chr1_4:68506822-68506841 Msa0180540:exon 30.0%
AGAAAAAGAAAGGGTTTGAA+AGG - chr1_4:68506952-68506971 None:intergenic 30.0%
! TCAGACCATTTTCTTTCAAT+TGG + chr1_4:68507150-68507169 Msa0180540:CDS 30.0%
ATTGCGAAAGTTTATGGAAA+CGG - chr1_4:68507383-68507402 None:intergenic 30.0%
! TATTTGGATTGACTTATCTG+AGG - chr1_4:68507431-68507450 None:intergenic 30.0%
! TCCATTTTATGGTTGTATTG+AGG + chr1_4:68507510-68507529 Msa0180540:intron 30.0%
! CCATTTTATGGTTGTATTGA+GGG + chr1_4:68507511-68507530 Msa0180540:intron 30.0%
CTACATTGTATGAGTGAAAA+TGG - chr1_4:68507596-68507615 None:intergenic 30.0%
GAGTGTTTGAATCTAAAAAC+AGG + chr1_4:68507667-68507686 Msa0180540:intron 30.0%
AAAGAAATAGGCGAAATTGA+TGG + chr1_4:68507735-68507754 Msa0180540:CDS 30.0%
TCATCAAGTAAGTAAGAACA+AGG + chr1_4:68507788-68507807 Msa0180540:intron 30.0%
CATCAAGTAAGTAAGAACAA+GGG + chr1_4:68507789-68507808 Msa0180540:intron 30.0%
!! ATTTTAAGGACCAAGTTAAG+TGG + chr1_4:68508015-68508034 Msa0180540:intron 30.0%
!! AAGGTAGCCTATATTTTTGA+AGG + chr1_4:68508049-68508068 Msa0180540:intron 30.0%
!!! ATTTTTTCCACCTTGGTTAA+CGG + chr1_4:68508150-68508169 Msa0180540:intron 30.0%
TAGATTATATCCGTTAACCA+AGG - chr1_4:68508163-68508182 None:intergenic 30.0%
ATGAATTCCAAACAAGACTA+GGG - chr1_4:68508208-68508227 None:intergenic 30.0%
! TTTGGAATTCATGCAATACT+AGG + chr1_4:68508216-68508235 Msa0180540:intron 30.0%
AGGTAGTTAGAATACCTATT+TGG + chr1_4:68508236-68508255 Msa0180540:intron 30.0%
TTGGCTATTCCATATTATGA+TGG + chr1_4:68508255-68508274 Msa0180540:CDS 30.0%
! GTTCTAAGTCCATCATAATA+TGG - chr1_4:68508267-68508286 None:intergenic 30.0%
!! ATGACAAAAGTATTGAAGCT+TGG + chr1_4:68508301-68508320 Msa0180540:CDS 30.0%
GAAGAATGACATAATAGAGT+TGG + chr1_4:68508662-68508681 Msa0180540:CDS 30.0%
! ATCCACAAGATTTTGAATCT+CGG + chr1_4:68508700-68508719 Msa0180540:CDS 30.0%
! GAAATATCTGAAGCAATCAA+GGG - chr1_4:68508879-68508898 None:intergenic 30.0%
! AGAAATATCTGAAGCAATCA+AGG - chr1_4:68508880-68508899 None:intergenic 30.0%
TTGATTGCTTCAGATATTTC+TGG + chr1_4:68508879-68508898 Msa0180540:CDS 30.0%
TATTACTTCCTAAGCAACTA+TGG + chr1_4:68509110-68509129 Msa0180540:CDS 30.0%
! CATAATATGTAACTTGCCTT+CGG - chr1_4:68509244-68509263 None:intergenic 30.0%
CTAAATGGAAGTGAAGAATT+AGG - chr1_4:68509324-68509343 None:intergenic 30.0%
GTTTCTCTCTTTCTTCTAAA+TGG - chr1_4:68509339-68509358 None:intergenic 30.0%
TGATACCCTTCTTTATGGAA+TGG + chr1_4:68507000-68507019 Msa0180540:intron 35.0%
ACCAAACATCAAGCTGAAAA+GGG - chr1_4:68507039-68507058 None:intergenic 35.0%
AACCAAACATCAAGCTGAAA+AGG - chr1_4:68507040-68507059 None:intergenic 35.0%
TGCAGCAAAAAGGGAAATTT+GGG + chr1_4:68507108-68507127 Msa0180540:CDS 35.0%
! GACCATTTTCTTTCAATTGG+AGG + chr1_4:68507153-68507172 Msa0180540:CDS 35.0%
CTCCTCCAATTGAAAGAAAA+TGG - chr1_4:68507158-68507177 None:intergenic 35.0%
! CATTTTCTTTCAATTGGAGG+AGG + chr1_4:68507156-68507175 Msa0180540:CDS 35.0%
CAAATAGGGCCTAAATACAT+GGG - chr1_4:68507195-68507214 None:intergenic 35.0%
CTTGTGATTGCGAAAGTTTA+TGG - chr1_4:68507389-68507408 None:intergenic 35.0%
CCCTCAATACAACCATAAAA+TGG - chr1_4:68507514-68507533 None:intergenic 35.0%
TTGTATGAGTGAAAATGGTG+AGG - chr1_4:68507591-68507610 None:intergenic 35.0%
AAGGAAGCAGTGAAAGAAAT+AGG + chr1_4:68507723-68507742 Msa0180540:CDS 35.0%
TTCAAAAACAGATGACCTCA+AGG - chr1_4:68507865-68507884 None:intergenic 35.0%
! TGTCACATTTTTGCCCAAAT+TGG + chr1_4:68507956-68507975 Msa0180540:intron 35.0%
! CATCCTTTAAGGACCAATTT+GGG - chr1_4:68507972-68507991 None:intergenic 35.0%
! TCATCCTTTAAGGACCAATT+TGG - chr1_4:68507973-68507992 None:intergenic 35.0%
TCCTTAAAGGATGAAACTAG+TGG + chr1_4:68507979-68507998 Msa0180540:intron 35.0%
! ACCACTAGTTTCATCCTTTA+AGG - chr1_4:68507983-68508002 None:intergenic 35.0%
CCAAGGTCCTTCAAAAATAT+AGG - chr1_4:68508059-68508078 None:intergenic 35.0%
!! CCTATATTTTTGAAGGACCT+TGG + chr1_4:68508056-68508075 Msa0180540:intron 35.0%
ATTATATCCGTTAACCAAGG+TGG - chr1_4:68508160-68508179 None:intergenic 35.0%
CATGAATTCCAAACAAGACT+AGG - chr1_4:68508209-68508228 None:intergenic 35.0%
CAATTTGCCAGAAGAATATC+AGG + chr1_4:68508327-68508346 Msa0180540:CDS 35.0%
CAGAAGAATATCAGGTGAAT+GGG + chr1_4:68508335-68508354 Msa0180540:CDS 35.0%
! TCCACAAGATTTTGAATCTC+GGG + chr1_4:68508701-68508720 Msa0180540:CDS 35.0%
! AAGATTTTGAATCTCGGGTT+AGG + chr1_4:68508706-68508725 Msa0180540:CDS 35.0%
AGTTGATCACCATTTCTGAA+CGG - chr1_4:68508813-68508832 None:intergenic 35.0%
TTCAGAAATGGTGATCAACT+TGG + chr1_4:68508813-68508832 Msa0180540:CDS 35.0%
!! CTTCAGATATTTCTGGTATC+TGG + chr1_4:68508886-68508905 Msa0180540:CDS 35.0%
AAAACAAAGGGTAACAAGAG+AGG - chr1_4:68508967-68508986 None:intergenic 35.0%
ATGGCTTTCTATTTAACTCC+AGG + chr1_4:68509024-68509043 Msa0180540:intron 35.0%
! GTGATCTTTCAAGAGCTTTT+AGG + chr1_4:68509046-68509065 Msa0180540:CDS 35.0%
AAACTCTAACTGAAGTAGGA+TGG + chr1_4:68509161-68509180 Msa0180540:CDS 35.0%
! TAGGATGGCTTTTAGATCAA+GGG + chr1_4:68509176-68509195 Msa0180540:CDS 35.0%
! TATGTTCACATAGATTGGCT+TGG + chr1_4:68509284-68509303 Msa0180540:three_prime_UTR 35.0%
GAAGAGTCGTTACATAGGAT+AGG + chr1_4:68506751-68506770 Msa0180540:five_prime_UTR 40.0%
GTTGAAGAATGCATGGAGAA+GGG - chr1_4:68506879-68506898 None:intergenic 40.0%
TACATGTGGTAGATGTGAAG+AGG - chr1_4:68506926-68506945 None:intergenic 40.0%
! GGTTTGAAAGGAAGTACATG+TGG - chr1_4:68506940-68506959 None:intergenic 40.0%
! TCCCTTTTCAGCTTGATGTT+TGG + chr1_4:68507035-68507054 Msa0180540:intron 40.0%
AGAGTTCACTGCAGCAAAAA+GGG + chr1_4:68507099-68507118 Msa0180540:intron 40.0%
CTGCAGCAAAAAGGGAAATT+TGG + chr1_4:68507107-68507126 Msa0180540:CDS 40.0%
GCAGCAAAAAGGGAAATTTG+GGG + chr1_4:68507109-68507128 Msa0180540:CDS 40.0%
! ATTTGGGGCTTTCCTATTAC+TGG + chr1_4:68507124-68507143 Msa0180540:CDS 40.0%
! TTTGGGGCTTTCCTATTACT+GGG + chr1_4:68507125-68507144 Msa0180540:CDS 40.0%
! ATGGTCTGAAACCCAGTAAT+AGG - chr1_4:68507139-68507158 None:intergenic 40.0%
TTTCTTTCAATTGGAGGAGG+AGG + chr1_4:68507159-68507178 Msa0180540:CDS 40.0%
CCAAATAGGGCCTAAATACA+TGG - chr1_4:68507196-68507215 None:intergenic 40.0%
CCATGTATTTAGGCCCTATT+TGG + chr1_4:68507193-68507212 Msa0180540:intron 40.0%
ATCACAAGTGCTCATGTTAG+TGG + chr1_4:68507401-68507420 Msa0180540:intron 40.0%
TATGAGTGAAAATGGTGAGG+TGG - chr1_4:68507588-68507607 None:intergenic 40.0%
TGCTTCCTTTGCATCTTGAT+TGG - chr1_4:68507712-68507731 None:intergenic 40.0%
TGATGGTCTGATAGGTGTAA+TGG + chr1_4:68507752-68507771 Msa0180540:CDS 40.0%
GATGGTCTGATAGGTGTAAT+GGG + chr1_4:68507753-68507772 Msa0180540:CDS 40.0%
GACAAGATGAAATGGTAGGA+AGG - chr1_4:68507839-68507858 None:intergenic 40.0%
GCAAGACAAGATGAAATGGT+AGG - chr1_4:68507843-68507862 None:intergenic 40.0%
CAAGGCAAGACAAGATGAAA+TGG - chr1_4:68507847-68507866 None:intergenic 40.0%
TTTCATCTTGTCTTGCCTTG+AGG + chr1_4:68507847-68507866 Msa0180540:intron 40.0%
GGGCAAAAATGTGACATTGA+AGG - chr1_4:68507952-68507971 None:intergenic 40.0%
TTGCCCAAATTGGTCCTTAA+AGG + chr1_4:68507966-68507985 Msa0180540:intron 40.0%
TTAAGGACCAAGTTAAGTGG+AGG + chr1_4:68508018-68508037 Msa0180540:intron 40.0%
TTAAGTGGAGGACTGATGTA+AGG + chr1_4:68508030-68508049 Msa0180540:intron 40.0%
!!! GCTGTTGATTTTTTCCACCT+TGG + chr1_4:68508143-68508162 Msa0180540:intron 40.0%
TCCAAACAAGACTAGGGAAA+GGG - chr1_4:68508202-68508221 None:intergenic 40.0%
TTCCAAACAAGACTAGGGAA+AGG - chr1_4:68508203-68508222 None:intergenic 40.0%
CCATTCACCTGATATTCTTC+TGG - chr1_4:68508337-68508356 None:intergenic 40.0%
CCAGAAGAATATCAGGTGAA+TGG + chr1_4:68508334-68508353 Msa0180540:CDS 40.0%
AGAATATCAGGTGAATGGGA+TGG + chr1_4:68508339-68508358 Msa0180540:CDS 40.0%
AGACTTCAGTAATCAAGGCA+GGG + chr1_4:68508371-68508390 Msa0180540:CDS 40.0%
ATACTTTGACCTCCCATTCT+CGG - chr1_4:68508434-68508453 None:intergenic 40.0%
! GGGAGGTCAAAGTATTTGAT+TGG + chr1_4:68508439-68508458 Msa0180540:CDS 40.0%
TACTCAAGAACATGATCCTC+TGG - chr1_4:68508492-68508511 None:intergenic 40.0%
AGGATCATGTTCTTGAGTAC+AGG + chr1_4:68508493-68508512 Msa0180540:CDS 40.0%
AACAGTGGGAAGTAACTGAA+CGG - chr1_4:68508520-68508539 None:intergenic 40.0%
AGTTCGGATGAGAGAAAAGT+GGG + chr1_4:68508570-68508589 Msa0180540:CDS 40.0%
ACCCGAGATTCAAAATCTTG+TGG - chr1_4:68508705-68508724 None:intergenic 40.0%
! TTAGAGTATTTCGTGAGCAG+TGG + chr1_4:68508781-68508800 Msa0180540:CDS 40.0%
AGAAATGGTGATCAACTTGG+AGG + chr1_4:68508816-68508835 Msa0180540:CDS 40.0%
TAGAAGCGAAAGCAGAATCA+CGG - chr1_4:68508851-68508870 None:intergenic 40.0%
!! AGATATTTCTGGTATCTGGC+AGG + chr1_4:68508890-68508909 Msa0180540:CDS 40.0%
!! GATATTTCTGGTATCTGGCA+GGG + chr1_4:68508891-68508910 Msa0180540:CDS 40.0%
AAAGCTCTTGAAAGATCACC+TGG - chr1_4:68509045-68509064 None:intergenic 40.0%
ATGCAGAAGTCTGTTAGAGA+TGG + chr1_4:68509076-68509095 Msa0180540:CDS 40.0%
AACGAACACCATAGTTGCTT+AGG - chr1_4:68509121-68509140 None:intergenic 40.0%
GTGTTCGTTTGAACGAAACA+AGG + chr1_4:68509132-68509151 Msa0180540:CDS 40.0%
TCGTTTGAACGAAACAAGGA+TGG + chr1_4:68509136-68509155 Msa0180540:CDS 40.0%
GGTGAAACTCTAACTGAAGT+AGG + chr1_4:68509157-68509176 Msa0180540:CDS 40.0%
! GTAGGATGGCTTTTAGATCA+AGG + chr1_4:68509175-68509194 Msa0180540:CDS 40.0%
GACGTTTGCAGAGAAGAATG+AGG - chr1_4:68506848-68506867 None:intergenic 45.0%
AATGCATGGAGAAGGGAAAG+TGG - chr1_4:68506872-68506891 None:intergenic 45.0%
GGTTGAAGAATGCATGGAGA+AGG - chr1_4:68506880-68506899 None:intergenic 45.0%
GAACGTGGTTGAAGAATGCA+TGG - chr1_4:68506886-68506905 None:intergenic 45.0%
ATGTGAAGAGGATGGAAGAG+TGG - chr1_4:68506914-68506933 None:intergenic 45.0%
TGTGGTAGATGTGAAGAGGA+TGG - chr1_4:68506922-68506941 None:intergenic 45.0%
CAGAGTTCACTGCAGCAAAA+AGG + chr1_4:68507098-68507117 Msa0180540:intron 45.0%
TGCAGCCAATCAAGATGCAA+AGG + chr1_4:68507704-68507723 Msa0180540:CDS 45.0%
! GGCGAAATTGATGGTCTGAT+AGG + chr1_4:68507744-68507763 Msa0180540:CDS 45.0%
CATCAGTCCTCCACTTAACT+TGG - chr1_4:68508028-68508047 None:intergenic 45.0%
!! ACCCTTTCCCTAGTCTTGTT+TGG + chr1_4:68508198-68508217 Msa0180540:intron 45.0%
! TCAGGTGAATGGGATGGATT+TGG + chr1_4:68508345-68508364 Msa0180540:CDS 45.0%
GGAGCAGACTTCAGTAATCA+AGG + chr1_4:68508366-68508385 Msa0180540:CDS 45.0%
CAGACTTCAGTAATCAAGGC+AGG + chr1_4:68508370-68508389 Msa0180540:CDS 45.0%
GGTAATTGAACTGCCAGAGT+CGG + chr1_4:68508392-68508411 Msa0180540:CDS 45.0%
GTTCAGTTACTTCCCACTGT+TGG + chr1_4:68508519-68508538 Msa0180540:CDS 45.0%
ACTGTATACCGTAGCAGCAT+CGG - chr1_4:68508553-68508572 None:intergenic 45.0%
TGCTGCTACGGTATACAGTT+CGG + chr1_4:68508554-68508573 Msa0180540:CDS 45.0%
CAGTTCGGATGAGAGAAAAG+TGG + chr1_4:68508569-68508588 Msa0180540:CDS 45.0%
!! ACTGGATTGGTAAGCAAAGG+CGG - chr1_4:68508616-68508635 None:intergenic 45.0%
CAACATAAGAGCCACTGGAT+TGG - chr1_4:68508629-68508648 None:intergenic 45.0%
TACAGCAACATAAGAGCCAC+TGG - chr1_4:68508634-68508653 None:intergenic 45.0%
GTGGCTCTTATGTTGCTGTA+TGG + chr1_4:68508634-68508653 Msa0180540:CDS 45.0%
AATACAGAGATGGAGCTGCA+AGG + chr1_4:68508756-68508775 Msa0180540:CDS 45.0%
GTATTTCGTGAGCAGTGGTA+TGG + chr1_4:68508786-68508805 Msa0180540:CDS 45.0%
TGGTATGGACCGTTCAGAAA+TGG + chr1_4:68508801-68508820 Msa0180540:CDS 45.0%
! ACTTTTAGCCCTACAGACAC+CGG + chr1_4:68508930-68508949 Msa0180540:CDS 45.0%
TTACACTTCCGGTGTCTGTA+GGG - chr1_4:68508941-68508960 None:intergenic 45.0%
AAGAGAGGTCCTTACACTTC+CGG - chr1_4:68508952-68508971 None:intergenic 45.0%
! ATGGCTTTTAGATCAAGGGC+AGG + chr1_4:68509180-68509199 Msa0180540:CDS 45.0%
!! GTTCACATAGATTGGCTTGG+AGG + chr1_4:68509287-68509306 Msa0180540:three_prime_UTR 45.0%
! TATTGGTGAGTGTGACTTGC+CGG - chr1_4:68509414-68509433 None:intergenic 45.0%
GCAAGTCACACTCACCAATA+AGG + chr1_4:68509414-68509433 Msa0180540:three_prime_UTR 45.0%
AGAGAGGGTCTCTACCTTAT+TGG - chr1_4:68509431-68509450 None:intergenic 45.0%
GGAAGAGTGGAGAAAGAACG+TGG - chr1_4:68506901-68506920 None:intergenic 50.0%
TGGACTTAGAACTGCGCTGA+AGG + chr1_4:68508275-68508294 Msa0180540:CDS 50.0%
AATTGAACTGCCAGAGTCGG+TGG + chr1_4:68508395-68508414 Msa0180540:CDS 50.0%
TGCCTGAAGCATACCGAGAA+TGG + chr1_4:68508418-68508437 Msa0180540:CDS 50.0%
GCCTGAAGCATACCGAGAAT+GGG + chr1_4:68508419-68508438 Msa0180540:CDS 50.0%
TCCCATTCTCGGTATGCTTC+AGG - chr1_4:68508423-68508442 None:intergenic 50.0%
TGAAGCATACCGAGAATGGG+AGG + chr1_4:68508422-68508441 Msa0180540:CDS 50.0%
TCCTCTGGATCAGCAAGAGT+GGG - chr1_4:68508477-68508496 None:intergenic 50.0%
ATCCTCTGGATCAGCAAGAG+TGG - chr1_4:68508478-68508497 None:intergenic 50.0%
ACTTCCCACTGTTGGATGTG+AGG + chr1_4:68508527-68508546 Msa0180540:CDS 50.0%
TCGGATGAGAGAAAAGTGGG+CGG + chr1_4:68508573-68508592 Msa0180540:CDS 50.0%
GCCTTTGCTTACCAATCCAG+TGG + chr1_4:68508615-68508634 Msa0180540:CDS 50.0%
!! GCCACTGGATTGGTAAGCAA+AGG - chr1_4:68508619-68508638 None:intergenic 50.0%
CTTACACTTCCGGTGTCTGT+AGG - chr1_4:68508942-68508961 None:intergenic 50.0%
! CTACAGACACCGGAAGTGTA+AGG + chr1_4:68508940-68508959 Msa0180540:intron 50.0%
!! GATTGGCTTGGAGGATCACA+TGG + chr1_4:68509296-68509315 Msa0180540:three_prime_UTR 50.0%
CCTCTGGATCAGCAAGAGTG+GGG - chr1_4:68508476-68508495 None:intergenic 55.0%
TCGGCCTCACATCCAACAGT+GGG - chr1_4:68508534-68508553 None:intergenic 55.0%
ATCGGCCTCACATCCAACAG+TGG - chr1_4:68508535-68508554 None:intergenic 55.0%
ATGTGAGGCCGATGCTGCTA+CGG + chr1_4:68508542-68508561 Msa0180540:CDS 55.0%
! CTCAAGCACTGCAAAGCCGA+AGG + chr1_4:68509225-68509244 Msa0180540:CDS 55.0%
CCCCACTCTTGCTGATCCAG+AGG + chr1_4:68508473-68508492 Msa0180540:CDS 60.0%
AAAGTGGGCGGCGAAAGCAG+TGG + chr1_4:68508585-68508604 Msa0180540:CDS 60.0%
!! GCTTCAGGCACCACCGACTC+TGG - chr1_4:68508408-68508427 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 68506748 68509483 68506748 ID=Msa0180540;Name=Msa0180540
chr1_4 mRNA 68506748 68509483 68506748 ID=Msa0180540-mRNA-1;Parent=Msa0180540;Name=Msa0180540-mRNA-1;_AED=0.18;_eAED=0.18;_QI=93|0.75|0.8|1|1|1|5|219|405
chr1_4 exon 68506748 68506942 68506748 ID=Msa0180540-mRNA-1:exon:22633;Parent=Msa0180540-mRNA-1
chr1_4 exon 68507101 68507180 68507101 ID=Msa0180540-mRNA-1:exon:22634;Parent=Msa0180540-mRNA-1
chr1_4 exon 68507689 68507794 68507689 ID=Msa0180540-mRNA-1:exon:22635;Parent=Msa0180540-mRNA-1
chr1_4 exon 68508246 68508956 68508246 ID=Msa0180540-mRNA-1:exon:22636;Parent=Msa0180540-mRNA-1
chr1_4 exon 68509046 68509483 68509046 ID=Msa0180540-mRNA-1:exon:22637;Parent=Msa0180540-mRNA-1
chr1_4 five_prime_UTR 68506748 68506840 68506748 ID=Msa0180540-mRNA-1:five_prime_utr;Parent=Msa0180540-mRNA-1
chr1_4 CDS 68506841 68506942 68506841 ID=Msa0180540-mRNA-1:cds;Parent=Msa0180540-mRNA-1
chr1_4 CDS 68507101 68507180 68507101 ID=Msa0180540-mRNA-1:cds;Parent=Msa0180540-mRNA-1
chr1_4 CDS 68507689 68507794 68507689 ID=Msa0180540-mRNA-1:cds;Parent=Msa0180540-mRNA-1
chr1_4 CDS 68508246 68508956 68508246 ID=Msa0180540-mRNA-1:cds;Parent=Msa0180540-mRNA-1
chr1_4 CDS 68509046 68509264 68509046 ID=Msa0180540-mRNA-1:cds;Parent=Msa0180540-mRNA-1
chr1_4 three_prime_UTR 68509265 68509483 68509265 ID=Msa0180540-mRNA-1:three_prime_utr;Parent=Msa0180540-mRNA-1
Gene Sequence

>Msa0180540

ATGGCCTCATTCTTCTCTGCAAACGTCACCACTTTCCCTTCTCCATGCATTCTTCAACCACGTTCTTTCTCCACTCTTCCATCCTCTTCACATCTACCACATAGTTCACTGCAGCAAAAAGGGAAATTTGGGGCTTTCCTATTACTGGGTTTCAGACCATTTTCTTTCAATTGGAGGAGGAGGAGAACTTTGATGTGTGCAGCCAATCAAGATGCAAAGGAAGCAGTGAAAGAAATAGGCGAAATTGATGGTCTGATAGGTGTAATGGGTGAAGTCAATTCTCATCAAAATACCTATTTGGCTATTCCATATTATGATGGACTTAGAACTGCGCTGAAGGTACATGACAAAAGTATTGAAGCTTGGTCGCAATTTGCCAGAAGAATATCAGGTGAATGGGATGGATTTGGAGCAGACTTCAGTAATCAAGGCAGGGTAATTGAACTGCCAGAGTCGGTGGTGCCTGAAGCATACCGAGAATGGGAGGTCAAAGTATTTGATTGGCAGACTCAATGCCCCACTCTTGCTGATCCAGAGGATCATGTTCTTGAGTACAGGTCCGTTCAGTTACTTCCCACTGTTGGATGTGAGGCCGATGCTGCTACGGTATACAGTTCGGATGAGAGAAAAGTGGGCGGCGAAAGCAGTGGAGTTACCGCCTTTGCTTACCAATCCAGTGGCTCTTATGTTGCTGTATGGCAGAAGAAGAATGACATAATAGAGTTGGAATACTGCTTGATCAATCCACAAGATTTTGAATCTCGGGTTAGGTTTATTCAGCGTATACGTGTATTAAATAATACAGAGATGGAGCTGCAAGGTATTAGAGTATTTCGTGAGCAGTGGTATGGACCGTTCAGAAATGGTGATCAACTTGGAGGTTGTGCTATCCGTGATTCTGCTTTCGCTTCTACAGCACCCTTGATTGCTTCAGATATTTCTGGTATCTGGCAGGGATCTAAAGCTGTCACTACTTTTAGCCCTACAGACACCGGAAGTGTGATCTTTCAAGAGCTTTTAGGTGACGAAATGCAGAAGTCTGTTAGAGATGGAGAAAACAATGTATTACTTCCTAAGCAACTATGGTGTTCGTTTGAACGAAACAAGGATGGTGAAACTCTAACTGAAGTAGGATGGCTTTTAGATCAAGGGCAGGCAATCACATCAAGCTGCTTATTCTCAAGCACTGCAAAGCCGAAGGCAAGTTACATATTATGA

Protein sequence

>Msa0180540

MASFFSANVTTFPSPCILQPRSFSTLPSSSHLPHSSLQQKGKFGAFLLLGFRPFSFNWRRRRTLMCAANQDAKEAVKEIGEIDGLIGVMGEVNSHQNTYLAIPYYDGLRTALKVHDKSIEAWSQFARRISGEWDGFGADFSNQGRVIELPESVVPEAYREWEVKVFDWQTQCPTLADPEDHVLEYRSVQLLPTVGCEADAATVYSSDERKVGGESSGVTAFAYQSSGSYVAVWQKKNDIIELEYCLINPQDFESRVRFIQRIRVLNNTEMELQGIRVFREQWYGPFRNGDQLGGCAIRDSAFASTAPLIASDISGIWQGSKAVTTFSPTDTGSVIFQELLGDEMQKSVRDGENNVLLPKQLWCSFERNKDGETLTEVGWLLDQGQAITSSCLFSSTAKPKASYIL*