AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0353900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0353900 MtrunA17_Chr3g0089201 97.638 381 7 2 1 380 1 380 0.0 750
Msa0353900 MtrunA17_Chr3g0089221 99.528 212 1 0 169 380 1 212 8.84e-154 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0353900 AT3G08010.1 67.700 387 105 4 1 380 1 374 0.0 530

Find 95 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATGATGCTTATATTTA+AGG 0.045804 3_1:-24617564 None:intergenic
TAAAATAGAACTTATATTTA+AGG 0.120470 3_1:-24617611 None:intergenic
CAGAACATGTTTGGAGTTTA+AGG 0.150458 3_1:-24612451 None:intergenic
CTGAAGATTGTATTGGCTTC+TGG 0.208718 3_1:+24617378 Msa0353900:CDS
CTAAAGAAGCGAATGTTTCT+AGG 0.224379 3_1:-24612791 None:intergenic
ATACTATTAATAACATTATT+AGG 0.258304 3_1:-24612716 None:intergenic
AATCATACTCACCCGTTTAC+TGG 0.258872 3_1:-24614391 None:intergenic
GAAAGATTTGGATATGGTTC+TGG 0.270200 3_1:+24616260 Msa0353900:CDS
CTAGAAACATTCGCTTCTTT+AGG 0.283849 3_1:+24612792 Msa0353900:CDS
TGGGCTAGATCTTGATTTAT+TGG 0.288153 3_1:+24616280 Msa0353900:CDS
GGGCTAGATCTTGATTTATT+GGG 0.315434 3_1:+24616281 Msa0353900:CDS
ATTCAGTCATAATAATTTGT+AGG 0.319355 3_1:-24617435 None:intergenic
ATACTGTCAGGATCAGCTTC+TGG 0.321460 3_1:-24612578 None:intergenic
AGTAGCCATGGTTATGGTTA+TGG 0.328934 3_1:-24612303 None:intergenic
CAAATGATGCTTATATTTAA+GGG 0.347994 3_1:-24617563 None:intergenic
TGTTGCTATTTGTGATGAAC+TGG 0.370001 3_1:+24612757 Msa0353900:CDS
CTTCAGAATCTAACTCATCT+TGG 0.371396 3_1:-24617361 None:intergenic
GTCGCAAAAGGATTGTCTAA+TGG 0.378728 3_1:-24615860 None:intergenic
ATGCTAGAGGAAAGAAACTT+TGG 0.380045 3_1:+24612642 Msa0353900:CDS
TCTCGTGCTAAAATATTATC+AGG 0.382198 3_1:+24616353 Msa0353900:CDS
TCAGAGGAAAGATTTGGATA+TGG 0.386627 3_1:+24616254 Msa0353900:CDS
GAAGCAGCTAAGAAAGCTTC+TGG 0.387670 3_1:+24617317 Msa0353900:CDS
TTTCTGAGACAGAACATGTT+TGG 0.391400 3_1:-24612460 None:intergenic
GAGAGTTTGGTGGTGATGAC+GGG 0.393500 3_1:-24612377 None:intergenic
TTTCCTCTAGCATCAAGAAT+TGG 0.395207 3_1:-24612632 None:intergenic
TAAGAGCTCTTCCCAGTAAA+CGG 0.396897 3_1:+24614379 Msa0353900:CDS
AATAATTTGTAGGATTATAC+AGG 0.401336 3_1:-24617425 None:intergenic
TCAGCCTCAGAGGAAAGATT+TGG 0.414247 3_1:+24616248 Msa0353900:CDS
TTAGATTCTGAAGATTGTAT+TGG 0.414494 3_1:+24617371 Msa0353900:CDS
TTAAGGGCAGACGTAGTAAA+AGG 0.414695 3_1:-24617547 None:intergenic
CTTTGTGTGTAACTGATTTG+TGG 0.415730 3_1:-24612275 None:intergenic
GAAGATGCAACAGCCAATCC+TGG 0.417168 3_1:-24616332 None:intergenic
GCTTAGAGTAGCCATGGTTA+TGG 0.422554 3_1:-24612309 None:intergenic
AGATAACATGTTTCAGCAGT+TGG 0.424045 3_1:-24612551 None:intergenic
TACTGTCAGGATCAGCTTCT+GGG 0.430219 3_1:-24612577 None:intergenic
AAAGATTTGGATATGGTTCT+GGG 0.430953 3_1:+24616261 Msa0353900:CDS
GAAACATCCTGGATTTCAAA+AGG 0.431524 3_1:+24615820 Msa0353900:CDS
AACTAAAGAAGCTGAAGCTT+GGG 0.435084 3_1:+24617295 Msa0353900:CDS
TTTGTGTGTAACTGATTTGT+GGG 0.435175 3_1:-24612274 None:intergenic
GATAACATGTTTCAGCAGTT+GGG 0.444982 3_1:-24612550 None:intergenic
CTACAAAACTTTGTAACCTT+AGG 0.445193 3_1:-24617509 None:intergenic
ATGTTTGGAGTTTAAGGAAG+TGG 0.452226 3_1:-24612445 None:intergenic
AATTATTACAAAAGCATGTA+AGG 0.453031 3_1:+24614347 Msa0353900:CDS
TACAAAAGCATGTAAGGAGC+TGG 0.453660 3_1:+24614353 Msa0353900:CDS
ACGAGCAGTGTCCGTTTCAA+TGG 0.454973 3_1:-24617201 None:intergenic
CTAATGACTTTACCTGAGTA+AGG 0.456324 3_1:-24615932 None:intergenic
GGAGAGTTTGGTGGTGATGA+CGG 0.457343 3_1:-24612378 None:intergenic
CAACTAAAGAAGCTGAAGCT+TGG 0.463491 3_1:+24617294 Msa0353900:CDS
ATCCTGACAGTATATTAAGC+TGG 0.466941 3_1:+24612588 Msa0353900:CDS
GTCTAATGGCAAAAGAGGCT+TGG 0.468563 3_1:-24615846 None:intergenic
CTAACTCATCTTGGATTGCT+AGG 0.473543 3_1:-24617352 None:intergenic
TGCTAGAGGAAAGAAACTTT+GGG 0.479591 3_1:+24612643 Msa0353900:CDS
AAGAGCTCTTCCCAGTAAAC+GGG 0.480174 3_1:+24614380 Msa0353900:CDS
AACAGCCAATCCTGGGATCA+AGG 0.490579 3_1:-24616324 None:intergenic
TCCCAGCTTAATATACTGTC+AGG 0.490831 3_1:-24612590 None:intergenic
GGAAAATGGGAATTTGATGA+TGG 0.494810 3_1:-24612411 None:intergenic
AAATCTTTCCTCTGAGGCTG+AGG 0.496486 3_1:-24616246 None:intergenic
GGAGCTCTGTTCCATTGAAA+CGG 0.498099 3_1:+24617190 Msa0353900:CDS
GGTTGGTGTAGTTGAAAGAT+GGG 0.499156 3_1:-24612355 None:intergenic
AAATTCCAACTGAAAGAGTC+AGG 0.502775 3_1:-24617229 None:intergenic
CAGTATATTAAGCTGGGAGT+TGG 0.503857 3_1:+24612595 Msa0353900:CDS
ATCATACTCACCCGTTTACT+GGG 0.505577 3_1:-24614390 None:intergenic
TTTGTTCAGTTACCTTACTC+AGG 0.508695 3_1:+24615920 Msa0353900:CDS
TTTGGTGGTGATGACGGGGT+TGG 0.515396 3_1:-24612372 None:intergenic
AGCTTCAGCTTCTTTAGTTG+AGG 0.517831 3_1:-24617291 None:intergenic
ACTGTATACACGAAACATCC+TGG 0.520597 3_1:+24615809 Msa0353900:CDS
GGGTTGGTGTAGTTGAAAGA+TGG 0.526908 3_1:-24612356 None:intergenic
TTGTAGGATTATACAGGTGG+AGG 0.528540 3_1:-24617419 None:intergenic
GAAGACCTTGATCCCAGGAT+TGG 0.531133 3_1:+24616319 Msa0353900:CDS
TGTTGTTGTTGTTGATGATG+AGG 0.533351 3_1:-24612483 None:intergenic
AGACCAATTCTTGATGCTAG+AGG 0.533980 3_1:+24612629 Msa0353900:CDS
TCTAACCTGACTCTTTCAGT+TGG 0.538576 3_1:+24617224 Msa0353900:CDS
AAGCGAATGTTTCTAGGCAC+AGG 0.539819 3_1:-24612785 None:intergenic
GGATTGTCTAATGGCAAAAG+AGG 0.539986 3_1:-24615851 None:intergenic
GACGAGAAGACCTTGATCCC+AGG 0.544783 3_1:+24616314 Msa0353900:CDS
TCCTGACAGTATATTAAGCT+GGG 0.544833 3_1:+24612589 Msa0353900:CDS
TAGGATTATACAGGTGGAGG+TGG 0.549708 3_1:-24617416 None:intergenic
TATTATAGCCGTTCGAGAGG+AGG 0.550876 3_1:+24616223 Msa0353900:intron
AAACATCCTGGATTTCAAAA+GGG 0.557929 3_1:+24615821 Msa0353900:CDS
TCAGCTTCTTTAGTTGAGGT+AGG 0.564251 3_1:-24617287 None:intergenic
TATTAATAGTATCACTCTCA+AGG 0.566789 3_1:+24612727 Msa0353900:CDS
GTGTAACTGATTTGTGGGTG+AGG 0.567920 3_1:-24612269 None:intergenic
GTTGAAGCTTAGAGTAGCCA+TGG 0.581076 3_1:-24612315 None:intergenic
AGAGTTTGGTGGTGATGACG+GGG 0.583469 3_1:-24612376 None:intergenic
CTTTATTATAGCCGTTCGAG+AGG 0.585820 3_1:+24616220 Msa0353900:intron
AAGATGCAACAGCCAATCCT+GGG 0.585967 3_1:-24616331 None:intergenic
ACAAAAGCATGTAAGGAGCT+GGG 0.589228 3_1:+24614354 Msa0353900:CDS
AATTTGTAGGATTATACAGG+TGG 0.594095 3_1:-24617422 None:intergenic
GGCTGAGGCCTCCTCTCGAA+CGG 0.600823 3_1:-24616231 None:intergenic
AGAGGAGGCCTCAGCCTCAG+AGG 0.611276 3_1:+24616238 Msa0353900:CDS
TTTCAGTTGGAATTTCGACT+CGG 0.613028 3_1:+24617237 Msa0353900:CDS
GTTGGTGTAGTTGAAAGATG+GGG 0.645636 3_1:-24612354 None:intergenic
CACAGCCATAACCATAACCA+TGG 0.656537 3_1:+24612298 Msa0353900:exon
ATATCCAAATCTTTCCTCTG+AGG 0.661900 3_1:-24616252 None:intergenic
GCAGCTAAGAAAGCTTCTGG+AGG 0.687768 3_1:+24617320 Msa0353900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTATTAATAACATTATT+AGG - chr3_1:24612719-24612738 None:intergenic 10.0%
!!! CTAATTATTTTTATATACTT+TGG - chr3_1:24613588-24613607 None:intergenic 10.0%
!!! ATTTTAATTAAAAATTACCT+TGG + chr3_1:24616527-24616546 Msa0353900:intron 10.0%
!! TAAAATAGAACTTATATTTA+AGG - chr3_1:24617614-24617633 None:intergenic 10.0%
!! ATATATGTTAGAGATTAAAA+TGG + chr3_1:24613767-24613786 Msa0353900:intron 15.0%
!! ATAAAAAGAAAAAAAAAGGT+TGG + chr3_1:24614853-24614872 Msa0353900:intron 15.0%
!!! TTAACAACTATTTTTTGTTT+TGG + chr3_1:24615020-24615039 Msa0353900:intron 15.0%
!! TTAAAATGAAAAAGAAACAA+GGG - chr3_1:24615290-24615309 None:intergenic 15.0%
!!! TTTAAAATGAAAAAGAAACA+AGG - chr3_1:24615291-24615310 None:intergenic 15.0%
!! ATACATACATACATATATAA+AGG + chr3_1:24616411-24616430 Msa0353900:intron 15.0%
!! TACATACATACATATATAAA+GGG + chr3_1:24616412-24616431 Msa0353900:intron 15.0%
!! ACAGAATTAATTAATTATCA+TGG + chr3_1:24616570-24616589 Msa0353900:intron 15.0%
!!! TATACAAATTTACAGTATTT+TGG - chr3_1:24616764-24616783 None:intergenic 15.0%
!! AGTACTTATTGTTTATGTTA+CGG + chr3_1:24612834-24612853 Msa0353900:intron 20.0%
!!! TACTTTGGGAATTAAATTAA+GGG - chr3_1:24613573-24613592 None:intergenic 20.0%
!!! ATACTTTGGGAATTAAATTA+AGG - chr3_1:24613574-24613593 None:intergenic 20.0%
!!! GTTTGTAGCATTTTTTTTTA+GGG - chr3_1:24613670-24613689 None:intergenic 20.0%
!!! AGTTTGTAGCATTTTTTTTT+AGG - chr3_1:24613671-24613690 None:intergenic 20.0%
!!! ATGAGTTTTCATATACTTTA+GGG + chr3_1:24613697-24613716 Msa0353900:intron 20.0%
!! ACTATATCTTGTGTATTTAT+TGG + chr3_1:24613871-24613890 Msa0353900:intron 20.0%
!! ACACTTTATAAACTCTATTT+AGG - chr3_1:24613933-24613952 None:intergenic 20.0%
!!! TCAAAAAAATCTGAAACTAA+TGG + chr3_1:24614099-24614118 Msa0353900:intron 20.0%
!!! CAAAAAAATCTGAAACTAAT+GGG + chr3_1:24614100-24614119 Msa0353900:intron 20.0%
!!! AATTATTACAAAAGCATGTA+AGG + chr3_1:24614347-24614366 Msa0353900:CDS 20.0%
!! AAATGTTCTTAGAAAGTAAA+TGG - chr3_1:24614592-24614611 None:intergenic 20.0%
!! TAAAGTGATTAAACTGAATA+TGG - chr3_1:24614826-24614845 None:intergenic 20.0%
!! TAAAATGAAAAAGAAACAAG+GGG - chr3_1:24615289-24615308 None:intergenic 20.0%
!!! AATTATTGATTTCAACAAGA+TGG - chr3_1:24615380-24615399 None:intergenic 20.0%
!! ACAAATTATAAACATGTCAT+AGG - chr3_1:24616939-24616958 None:intergenic 20.0%
!!! AATAATTTGTAGGATTATAC+AGG - chr3_1:24617428-24617447 None:intergenic 20.0%
!!! ATTCAGTCATAATAATTTGT+AGG - chr3_1:24617438-24617457 None:intergenic 20.0%
!! CAAATGATGCTTATATTTAA+GGG - chr3_1:24617566-24617585 None:intergenic 20.0%
!! TCAAATGATGCTTATATTTA+AGG - chr3_1:24617567-24617586 None:intergenic 20.0%
! TATTAATAGTATCACTCTCA+AGG + chr3_1:24612727-24612746 Msa0353900:CDS 25.0%
! TTCAGTAAACTGATTAATTG+TGG + chr3_1:24612975-24612994 Msa0353900:intron 25.0%
!! TAAGTATTGTCAAACTGTTT+GGG + chr3_1:24613037-24613056 Msa0353900:intron 25.0%
! GTTATTGTTTACTTACTCAT+TGG + chr3_1:24613316-24613335 Msa0353900:intron 25.0%
! TGTGATTCTCTGTAATATTA+AGG - chr3_1:24613371-24613390 None:intergenic 25.0%
! ATAAAAAAACCATTATGCCA+TGG + chr3_1:24613444-24613463 Msa0353900:intron 25.0%
! AGAATAAGTAACTACTTGTA+GGG - chr3_1:24613502-24613521 None:intergenic 25.0%
!!! CTTTTTGTTAGCTTTTACAT+TGG + chr3_1:24613530-24613549 Msa0353900:intron 25.0%
!! GATGAGTTTTCATATACTTT+AGG + chr3_1:24613696-24613715 Msa0353900:intron 25.0%
!!! AACGACTTCATATATTTTAG+CGG + chr3_1:24613729-24613748 Msa0353900:intron 25.0%
!!! TAGATTTTAGCAAAACTGAT+TGG - chr3_1:24613973-24613992 None:intergenic 25.0%
!!! CTTTATTTTCTCTGCATTTA+GGG + chr3_1:24614041-24614060 Msa0353900:intron 25.0%
! TGTTACATATTGTTAGTGTA+AGG + chr3_1:24614275-24614294 Msa0353900:intron 25.0%
! GCAAACTAATCCATTTATAT+CGG - chr3_1:24614478-24614497 None:intergenic 25.0%
!!! ATATAAATGGATTAGTTTGC+TGG + chr3_1:24614478-24614497 Msa0353900:intron 25.0%
!! TAAACTGAATATGGATTTTC+AGG - chr3_1:24614817-24614836 None:intergenic 25.0%
! AAAAGAAAAAAAAAGGTTGG+AGG + chr3_1:24614856-24614875 Msa0353900:intron 25.0%
! AAAGAAAAAAAAAGGTTGGA+GGG + chr3_1:24614857-24614876 Msa0353900:intron 25.0%
! AAAAATAGTTGTTAAGCGTT+TGG - chr3_1:24615015-24615034 None:intergenic 25.0%
! TAATAATAAAGCTAACACAC+TGG + chr3_1:24615075-24615094 Msa0353900:intron 25.0%
!!! TTTTGGCTTGTTCAAAAAAA+AGG + chr3_1:24615177-24615196 Msa0353900:intron 25.0%
! AAAATGAAAAAGAAACAAGG+GGG - chr3_1:24615288-24615307 None:intergenic 25.0%
!!! ATATGGATCTTCTTTGTTTT+GGG - chr3_1:24615352-24615371 None:intergenic 25.0%
!!! AATATGGATCTTCTTTGTTT+TGG - chr3_1:24615353-24615372 None:intergenic 25.0%
! TAATGTTTCATCCAAGATAT+TGG + chr3_1:24615429-24615448 Msa0353900:intron 25.0%
!!! TGTTGGTTTTTATATGACTT+CGG + chr3_1:24615471-24615490 Msa0353900:intron 25.0%
!! ATAAAACACTGTGAATCTTT+TGG + chr3_1:24615681-24615700 Msa0353900:intron 25.0%
!! ACATGGTTTTTCATGTATTT+AGG + chr3_1:24615985-24616004 Msa0353900:intron 25.0%
!! CATGGTTTTTCATGTATTTA+GGG + chr3_1:24615986-24616005 Msa0353900:intron 25.0%
! ATCATTTATTATGCTTACAC+TGG + chr3_1:24616044-24616063 Msa0353900:intron 25.0%
! ATATATATGTATGTATGACC+CGG - chr3_1:24616474-24616493 None:intergenic 25.0%
!!! TCAAAGTCATTTTTAAACCA+AGG - chr3_1:24616547-24616566 None:intergenic 25.0%
! AAAATGTATGATAGCATCAT+AGG - chr3_1:24616668-24616687 None:intergenic 25.0%
! ATAAATGTTGACAAAAAAGC+TGG + chr3_1:24616783-24616802 Msa0353900:intron 25.0%
! TTTGTCTACAAATTCTATTC+AGG - chr3_1:24616817-24616836 None:intergenic 25.0%
! TAAGGTAATTCTACAATCAA+AGG - chr3_1:24617032-24617051 None:intergenic 25.0%
! TAATTAAGCGCTTATGTATA+AGG - chr3_1:24617050-24617069 None:intergenic 25.0%
!! TTAGATTCTGAAGATTGTAT+TGG + chr3_1:24617371-24617390 Msa0353900:CDS 25.0%
!! TTTGTGTGTAACTGATTTGT+GGG - chr3_1:24612277-24612296 None:intergenic 30.0%
!!! TTTGATGATGGATTTTGAAG+AGG - chr3_1:24612402-24612421 None:intergenic 30.0%
! TTTAAGGAAGTGGTTTTTGT+TGG - chr3_1:24612438-24612457 None:intergenic 30.0%
TGATTAATTGTGGACATGTT+TGG + chr3_1:24612985-24613004 Msa0353900:intron 30.0%
! GTAAGTATTGTCAAACTGTT+TGG + chr3_1:24613036-24613055 Msa0353900:intron 30.0%
TTCTCCAAGACAGTTTAAAA+GGG + chr3_1:24613121-24613140 Msa0353900:intron 30.0%
TTTCTTTCACTAAACTGTCT+TGG - chr3_1:24613207-24613226 None:intergenic 30.0%
!! GGGTTTGAAATAAAGTTTTG+CGG - chr3_1:24613482-24613501 None:intergenic 30.0%
CAGAATAAGTAACTACTTGT+AGG - chr3_1:24613503-24613522 None:intergenic 30.0%
CAAGTAGTTACTTATTCTGT+TGG + chr3_1:24613504-24613523 Msa0353900:intron 30.0%
!!! TTGTTAGCTTTTACATTGGT+AGG + chr3_1:24613534-24613553 Msa0353900:intron 30.0%
!!! TGTTAGCTTTTACATTGGTA+GGG + chr3_1:24613535-24613554 Msa0353900:intron 30.0%
CCTAAATGCAGAGAAAATAA+AGG - chr3_1:24614043-24614062 None:intergenic 30.0%
!!! CCTTTATTTTCTCTGCATTT+AGG + chr3_1:24614040-24614059 Msa0353900:intron 30.0%
! GCCTTTTCATAAGAAACTAA+GGG - chr3_1:24614126-24614145 None:intergenic 30.0%
! TGCCTTTTCATAAGAAACTA+AGG - chr3_1:24614127-24614146 None:intergenic 30.0%
CATGTAAGTCATGTTATGTT+TGG - chr3_1:24614257-24614276 None:intergenic 30.0%
! GCAATGAAATTTTGAATCCA+CGG - chr3_1:24614427-24614446 None:intergenic 30.0%
TAATTGGCAATAAAACCAAG+TGG + chr3_1:24614522-24614541 Msa0353900:intron 30.0%
! AATTTTACTTTGCATGTGAG+TGG + chr3_1:24614627-24614646 Msa0353900:intron 30.0%
AAGAAAAAAAAAGGTTGGAG+GGG + chr3_1:24614858-24614877 Msa0353900:intron 30.0%
GTAGATATTTGATTGTGATG+TGG + chr3_1:24614880-24614899 Msa0353900:intron 30.0%
GTTGTTCACAAATTTCTACA+GGG - chr3_1:24614909-24614928 None:intergenic 30.0%
CTGTAGAAATTTGTGAACAA+CGG + chr3_1:24614908-24614927 Msa0353900:intron 30.0%
AAATTTGTGAACAACGGAAA+GGG + chr3_1:24614914-24614933 Msa0353900:intron 30.0%
! AGTTAGAGCATCCAAAAATT+TGG + chr3_1:24615255-24615274 Msa0353900:intron 30.0%
AAATGAAAAAGAAACAAGGG+GGG - chr3_1:24615287-24615306 None:intergenic 30.0%
!!! TATGGATCTTCTTTGTTTTG+GGG - chr3_1:24615351-24615370 None:intergenic 30.0%
TTTGTCAGAAAATGTACTTC+TGG - chr3_1:24615534-24615553 None:intergenic 30.0%
!! GTGTAGGTTTTTAGAAATGT+GGG + chr3_1:24615585-24615604 Msa0353900:intron 30.0%
!! TGTAGGTTTTTAGAAATGTG+GGG + chr3_1:24615586-24615605 Msa0353900:intron 30.0%
AACATTTAAAAGCTGATGTC+AGG - chr3_1:24615629-24615648 None:intergenic 30.0%
GAAGCGTATAAAATATACAC+CGG - chr3_1:24615734-24615753 None:intergenic 30.0%
!! AGTGCTTGTCATTACTTTTA+TGG + chr3_1:24615768-24615787 Msa0353900:intron 30.0%
!! GTCATTACTTTTATGGTTAG+AGG + chr3_1:24615775-24615794 Msa0353900:CDS 30.0%
AAACATCCTGGATTTCAAAA+GGG + chr3_1:24615821-24615840 Msa0353900:CDS 30.0%
! AAACTTCCAGAAGATCTTTT+TGG + chr3_1:24615884-24615903 Msa0353900:CDS 30.0%
!! AAGATCTTTTTGGTGAAAGA+TGG + chr3_1:24615894-24615913 Msa0353900:CDS 30.0%
!! AGATCTTTTTGGTGAAAGAT+GGG + chr3_1:24615895-24615914 Msa0353900:CDS 30.0%
! TCTTTAAGAATTGCATGACA+TGG + chr3_1:24615968-24615987 Msa0353900:intron 30.0%
!!! ATTCCTCTTGTTTTAGTACA+AGG + chr3_1:24616135-24616154 Msa0353900:intron 30.0%
TCTCGTGCTAAAATATTATC+AGG + chr3_1:24616353-24616372 Msa0353900:CDS 30.0%
GTTAAGAAATATGCATACTC+TGG - chr3_1:24616874-24616893 None:intergenic 30.0%
AACTTACGACATAAACACTT+CGG + chr3_1:24616891-24616910 Msa0353900:intron 30.0%
CTACAATCAAAGGAGAAATT+TGG - chr3_1:24617022-24617041 None:intergenic 30.0%
ATAAAAGCTGTCACAGTAAA+TGG - chr3_1:24617161-24617180 None:intergenic 30.0%
AATTTGTAGGATTATACAGG+TGG - chr3_1:24617425-24617444 None:intergenic 30.0%
! GATTTCAGAAGTTTTACCTA+AGG + chr3_1:24617493-24617512 Msa0353900:three_prime_UTR 30.0%
CTACAAAACTTTGTAACCTT+AGG - chr3_1:24617512-24617531 None:intergenic 30.0%
!! CTTTGTGTGTAACTGATTTG+TGG - chr3_1:24612278-24612297 None:intergenic 35.0%
GGAAAATGGGAATTTGATGA+TGG - chr3_1:24612414-24612433 None:intergenic 35.0%
! GGTTTTTGTTGGAGGAAAAT+GGG - chr3_1:24612427-24612446 None:intergenic 35.0%
! TGGTTTTTGTTGGAGGAAAA+TGG - chr3_1:24612428-24612447 None:intergenic 35.0%
! ATGTTTGGAGTTTAAGGAAG+TGG - chr3_1:24612448-24612467 None:intergenic 35.0%
! CAGAACATGTTTGGAGTTTA+AGG - chr3_1:24612454-24612473 None:intergenic 35.0%
!! TTTCTGAGACAGAACATGTT+TGG - chr3_1:24612463-24612482 None:intergenic 35.0%
!! TGTTGTTGTTGTTGATGATG+AGG - chr3_1:24612486-24612505 None:intergenic 35.0%
GATAACATGTTTCAGCAGTT+GGG - chr3_1:24612553-24612572 None:intergenic 35.0%
AGATAACATGTTTCAGCAGT+TGG - chr3_1:24612554-24612573 None:intergenic 35.0%
ATCCTGACAGTATATTAAGC+TGG + chr3_1:24612588-24612607 Msa0353900:CDS 35.0%
TCCTGACAGTATATTAAGCT+GGG + chr3_1:24612589-24612608 Msa0353900:CDS 35.0%
TTTCCTCTAGCATCAAGAAT+TGG - chr3_1:24612635-24612654 None:intergenic 35.0%
ATGCTAGAGGAAAGAAACTT+TGG + chr3_1:24612642-24612661 Msa0353900:CDS 35.0%
TGCTAGAGGAAAGAAACTTT+GGG + chr3_1:24612643-24612662 Msa0353900:CDS 35.0%
!! TGTTGCTATTTGTGATGAAC+TGG + chr3_1:24612757-24612776 Msa0353900:CDS 35.0%
CTAAAGAAGCGAATGTTTCT+AGG - chr3_1:24612794-24612813 None:intergenic 35.0%
CTAGAAACATTCGCTTCTTT+AGG + chr3_1:24612792-24612811 Msa0353900:CDS 35.0%
GTTCTCCAAGACAGTTTAAA+AGG + chr3_1:24613120-24613139 Msa0353900:intron 35.0%
ACTAAACTGTCTTGGAGAAA+TGG - chr3_1:24613199-24613218 None:intergenic 35.0%
! GCAACCACTATTTAAAACCA+CGG - chr3_1:24613345-24613364 None:intergenic 35.0%
!!! GTGGTTTTAAATAGTGGTTG+CGG + chr3_1:24613344-24613363 Msa0353900:intron 35.0%
TAGAGTGACAATTACATGCA+TGG + chr3_1:24613807-24613826 Msa0353900:intron 35.0%
ATAGTTGAGTAGATGACGTA+TGG - chr3_1:24613856-24613875 None:intergenic 35.0%
TTTAGCAAAACTGATTGGCA+AGG - chr3_1:24613968-24613987 None:intergenic 35.0%
GCCCTTAGTTTCTTATGAAA+AGG + chr3_1:24614122-24614141 Msa0353900:intron 35.0%
!! TGGTGTCTTTAAGACATGTT+GGG + chr3_1:24614157-24614176 Msa0353900:intron 35.0%
TGCTCAGCAGAAAACTATAT+AGG + chr3_1:24614444-24614463 Msa0353900:intron 35.0%
CTAATCCATTTATATCGGCA+AGG - chr3_1:24614473-24614492 None:intergenic 35.0%
! TGACAATCTGAGACACTAAT+TGG + chr3_1:24614506-24614525 Msa0353900:intron 35.0%
! TAAGCTTTTGATCCAAGGTT+TGG - chr3_1:24614564-24614583 None:intergenic 35.0%
AAACCTTGGATCAAAAGCTT+AGG + chr3_1:24614563-24614582 Msa0353900:intron 35.0%
AACCTTGGATCAAAAGCTTA+GGG + chr3_1:24614564-24614583 Msa0353900:intron 35.0%
GCTAGAGTGACATTTAGTTA+TGG + chr3_1:24614649-24614668 Msa0353900:intron 35.0%
CGTTGTTCACAAATTTCTAC+AGG - chr3_1:24614910-24614929 None:intergenic 35.0%
GAAATTTGTGAACAACGGAA+AGG + chr3_1:24614913-24614932 Msa0353900:intron 35.0%
AATTTGTGAACAACGGAAAG+GGG + chr3_1:24614915-24614934 Msa0353900:intron 35.0%
!! TAGGTCGATGTTAGTTTGTT+TGG + chr3_1:24614972-24614991 Msa0353900:intron 35.0%
!! CGATGTTAGTTTGTTTGGAT+TGG + chr3_1:24614977-24614996 Msa0353900:intron 35.0%
! GAGGTCTGCAATTTCAATTT+TGG + chr3_1:24615160-24615179 Msa0353900:intron 35.0%
! GGGGGAATAAACCAAATTTT+TGG - chr3_1:24615269-24615288 None:intergenic 35.0%
!!! ATGGATCTTCTTTGTTTTGG+GGG - chr3_1:24615350-24615369 None:intergenic 35.0%
TCAACAAGATGGAGCAAATA+TGG - chr3_1:24615369-24615388 None:intergenic 35.0%
GAGTATGCTTTCCAATATCT+TGG - chr3_1:24615443-24615462 None:intergenic 35.0%
TCTAAAAACCTACACGTTTC+TGG - chr3_1:24615580-24615599 None:intergenic 35.0%
!! CGTGTAGGTTTTTAGAAATG+TGG + chr3_1:24615584-24615603 Msa0353900:intron 35.0%
!! GTAGGTTTTTAGAAATGTGG+GGG + chr3_1:24615587-24615606 Msa0353900:intron 35.0%
!! TTTTTAGAAATGTGGGGGAT+TGG + chr3_1:24615592-24615611 Msa0353900:intron 35.0%
!! TTTTAGAAATGTGGGGGATT+GGG + chr3_1:24615593-24615612 Msa0353900:intron 35.0%
TTTAAAAGCTGATGTCAGGA+AGG - chr3_1:24615625-24615644 None:intergenic 35.0%
!! AGTAATGACAAGCACTGAAA+AGG - chr3_1:24615764-24615783 None:intergenic 35.0%
GAAACATCCTGGATTTCAAA+AGG + chr3_1:24615820-24615839 Msa0353900:CDS 35.0%
CTTTCACCAAAAAGATCTTC+TGG - chr3_1:24615893-24615912 None:intergenic 35.0%
TTTGTTCAGTTACCTTACTC+AGG + chr3_1:24615920-24615939 Msa0353900:CDS 35.0%
CTAATGACTTTACCTGAGTA+AGG - chr3_1:24615935-24615954 None:intergenic 35.0%
! TGGGCTAGATCTTGATTTAT+TGG + chr3_1:24616280-24616299 Msa0353900:CDS 35.0%
GGGCTAGATCTTGATTTATT+GGG + chr3_1:24616281-24616300 Msa0353900:CDS 35.0%
TACATATATAAAGGGCAACC+CGG + chr3_1:24616420-24616439 Msa0353900:intron 35.0%
ATTGATCAAAGATGAGTGCT+AGG - chr3_1:24616734-24616753 None:intergenic 35.0%
ACAAATTCTATTCAGGACAC+TGG - chr3_1:24616810-24616829 None:intergenic 35.0%
! ACTGTGACAGCTTTTATGAA+TGG + chr3_1:24617164-24617183 Msa0353900:intron 35.0%
! GACAGCTTTTATGAATGGAT+TGG + chr3_1:24617169-24617188 Msa0353900:intron 35.0%
AAATTCCAACTGAAAGAGTC+AGG - chr3_1:24617232-24617251 None:intergenic 35.0%
TTTCAGTTGGAATTTCGACT+CGG + chr3_1:24617237-24617256 Msa0353900:CDS 35.0%
! TGAGGTAGGACTTTTCTTAT+AGG - chr3_1:24617276-24617295 None:intergenic 35.0%
AACTAAAGAAGCTGAAGCTT+GGG + chr3_1:24617295-24617314 Msa0353900:CDS 35.0%
CTTCAGAATCTAACTCATCT+TGG - chr3_1:24617364-24617383 None:intergenic 35.0%
AGTAGCCATGGTTATGGTTA+TGG - chr3_1:24612306-24612325 None:intergenic 40.0%
!!! AGATGGGGTTTTGATTCTTG+TGG - chr3_1:24612342-24612361 None:intergenic 40.0%
GTTGGTGTAGTTGAAAGATG+GGG - chr3_1:24612357-24612376 None:intergenic 40.0%
! GGTTGGTGTAGTTGAAAGAT+GGG - chr3_1:24612358-24612377 None:intergenic 40.0%
!! TTTTGAAGAGGAGAGTTTGG+TGG - chr3_1:24612390-24612409 None:intergenic 40.0%
!! GGATTTTGAAGAGGAGAGTT+TGG - chr3_1:24612393-24612412 None:intergenic 40.0%
! AAGGAAGTGGTTTTTGTTGG+AGG - chr3_1:24612435-24612454 None:intergenic 40.0%
TCCCAGCTTAATATACTGTC+AGG - chr3_1:24612593-24612612 None:intergenic 40.0%
CAGTATATTAAGCTGGGAGT+TGG + chr3_1:24612595-24612614 Msa0353900:CDS 40.0%
AGACCAATTCTTGATGCTAG+AGG + chr3_1:24612629-24612648 Msa0353900:CDS 40.0%
!! TTACGGTGTTACTTGCTGTT+TGG + chr3_1:24612851-24612870 Msa0353900:intron 40.0%
! ATGTACGTTCATAAGCACTG+TGG + chr3_1:24612892-24612911 Msa0353900:intron 40.0%
! TGTACGTTCATAAGCACTGT+GGG + chr3_1:24612893-24612912 Msa0353900:intron 40.0%
! GTTGCCCTTTTAAACTGTCT+TGG - chr3_1:24613128-24613147 None:intergenic 40.0%
!!! GAAGCCGTGGTTTTAAATAG+TGG + chr3_1:24613338-24613357 Msa0353900:intron 40.0%
AAATCTAGGCCATGGCATAA+TGG - chr3_1:24613456-24613475 None:intergenic 40.0%
! TTATGCCATGGCCTAGATTT+TGG + chr3_1:24613456-24613475 Msa0353900:intron 40.0%
! AAGTTTTGCGGCCAAAATCT+AGG - chr3_1:24613470-24613489 None:intergenic 40.0%
TCTGTAGCATCTCAACAACA+AGG - chr3_1:24613643-24613662 None:intergenic 40.0%
! TGAAAAGGCATGTTCATGTG+TGG + chr3_1:24614137-24614156 Msa0353900:intron 40.0%
!! GTGGTGTCTTTAAGACATGT+TGG + chr3_1:24614156-24614175 Msa0353900:intron 40.0%
AGACATGTTGGGATTTCACA+TGG + chr3_1:24614168-24614187 Msa0353900:intron 40.0%
GACATGTTGGGATTTCACAT+GGG + chr3_1:24614169-24614188 Msa0353900:intron 40.0%
! TACAAAAGCATGTAAGGAGC+TGG + chr3_1:24614353-24614372 Msa0353900:CDS 40.0%
! ACAAAAGCATGTAAGGAGCT+GGG + chr3_1:24614354-24614373 Msa0353900:CDS 40.0%
TAAGAGCTCTTCCCAGTAAA+CGG + chr3_1:24614379-24614398 Msa0353900:CDS 40.0%
ATCATACTCACCCGTTTACT+GGG - chr3_1:24614393-24614412 None:intergenic 40.0%
AATCATACTCACCCGTTTAC+TGG - chr3_1:24614394-24614413 None:intergenic 40.0%
TATGATTTCTGATTCTGCCG+TGG + chr3_1:24614407-24614426 Msa0353900:intron 40.0%
GGTTTCCTTGCCGATATAAA+TGG + chr3_1:24614465-24614484 Msa0353900:intron 40.0%
ACCTTGGATCAAAAGCTTAG+GGG + chr3_1:24614565-24614584 Msa0353900:intron 40.0%
ATTTGTGAACAACGGAAAGG+GGG + chr3_1:24614916-24614935 Msa0353900:intron 40.0%
!! TAGTTTGTTTGGATTGGCGT+CGG + chr3_1:24614983-24615002 Msa0353900:intron 40.0%
! TTTTCGTGACTGCTGTATTG+TGG + chr3_1:24615124-24615143 Msa0353900:intron 40.0%
CTGCAATTTCAAAGACTGTC+TGG + chr3_1:24615201-24615220 Msa0353900:intron 40.0%
CAACACTTTGTAGTTAGCAC+CGG - chr3_1:24615231-24615250 None:intergenic 40.0%
AGCATACTCATCTAGACTGT+TGG + chr3_1:24615454-24615473 Msa0353900:intron 40.0%
TGACTTCGGATGTACACATT+CGG + chr3_1:24615485-24615504 Msa0353900:intron 40.0%
TTTAGAAATGTGGGGGATTG+GGG + chr3_1:24615594-24615613 Msa0353900:intron 40.0%
! TGACTCTACTTCCTTTTCAG+AGG + chr3_1:24615704-24615723 Msa0353900:intron 40.0%
ACTGTATACACGAAACATCC+TGG + chr3_1:24615809-24615828 Msa0353900:CDS 40.0%
!!! TTGGATCCCTTTTGAAATCC+AGG - chr3_1:24615830-24615849 None:intergenic 40.0%
GGATTGTCTAATGGCAAAAG+AGG - chr3_1:24615854-24615873 None:intergenic 40.0%
GTCGCAAAAGGATTGTCTAA+TGG - chr3_1:24615863-24615882 None:intergenic 40.0%
!! TCTGGAAGTTTTGTCGCAAA+AGG - chr3_1:24615875-24615894 None:intergenic 40.0%
! CAGCCTTGTACTAAAACAAG+AGG - chr3_1:24616141-24616160 None:intergenic 40.0%
CTCTCGAACGGCTATAATAA+AGG - chr3_1:24616222-24616241 None:intergenic 40.0%
CTTTATTATAGCCGTTCGAG+AGG + chr3_1:24616220-24616239 Msa0353900:intron 40.0%
CAACACTTTCTCTAACACTC+TGG - chr3_1:24616698-24616717 None:intergenic 40.0%
TAAGCAGTGAGATAAGCGTT+TGG + chr3_1:24616843-24616862 Msa0353900:intron 40.0%
TCTAACCTGACTCTTTCAGT+TGG + chr3_1:24617224-24617243 Msa0353900:CDS 40.0%
TCAGCTTCTTTAGTTGAGGT+AGG - chr3_1:24617290-24617309 None:intergenic 40.0%
AGCTTCAGCTTCTTTAGTTG+AGG - chr3_1:24617294-24617313 None:intergenic 40.0%
CAACTAAAGAAGCTGAAGCT+TGG + chr3_1:24617294-24617313 Msa0353900:CDS 40.0%
CTAACTCATCTTGGATTGCT+AGG - chr3_1:24617355-24617374 None:intergenic 40.0%
!! CTGAAGATTGTATTGGCTTC+TGG + chr3_1:24617378-24617397 Msa0353900:CDS 40.0%
TTGTAGGATTATACAGGTGG+AGG - chr3_1:24617422-24617441 None:intergenic 40.0%
TTAAGGGCAGACGTAGTAAA+AGG - chr3_1:24617550-24617569 None:intergenic 40.0%
!! GTGTAACTGATTTGTGGGTG+AGG - chr3_1:24612272-24612291 None:intergenic 45.0%
CACAGCCATAACCATAACCA+TGG + chr3_1:24612298-24612317 Msa0353900:exon 45.0%
GCTTAGAGTAGCCATGGTTA+TGG - chr3_1:24612312-24612331 None:intergenic 45.0%
GTTGAAGCTTAGAGTAGCCA+TGG - chr3_1:24612318-24612337 None:intergenic 45.0%
!! GGGTTGGTGTAGTTGAAAGA+TGG - chr3_1:24612359-24612378 None:intergenic 45.0%
TACTGTCAGGATCAGCTTCT+GGG - chr3_1:24612580-24612599 None:intergenic 45.0%
ATACTGTCAGGATCAGCTTC+TGG - chr3_1:24612581-24612600 None:intergenic 45.0%
!! AAGCGAATGTTTCTAGGCAC+AGG - chr3_1:24612788-24612807 None:intergenic 45.0%
! ATAAGCACTGTGGGACTGTT+TGG + chr3_1:24612902-24612921 Msa0353900:intron 45.0%
! TAAGCACTGTGGGACTGTTT+GGG + chr3_1:24612903-24612922 Msa0353900:intron 45.0%
GACAGTTTAAAAGGGCAACC+CGG + chr3_1:24613129-24613148 Msa0353900:intron 45.0%
TACTTACTCATTGGAAGCCG+TGG + chr3_1:24613325-24613344 Msa0353900:intron 45.0%
AACCACGATTGAGGCTTCAT+CGG - chr3_1:24613405-24613424 None:intergenic 45.0%
TGGTACTAAGTCCTCACCAT+AGG + chr3_1:24613827-24613846 Msa0353900:intron 45.0%
AGATGACGTATGGTGTCCTA+TGG - chr3_1:24613846-24613865 None:intergenic 45.0%
!! TCCCGTGTTGATTAGTGATG+TGG + chr3_1:24613907-24613926 Msa0353900:intron 45.0%
GCCACATCACTAATCAACAC+GGG - chr3_1:24613911-24613930 None:intergenic 45.0%
GGCCACATCACTAATCAACA+CGG - chr3_1:24613912-24613931 None:intergenic 45.0%
AAGAGCTCTTCCCAGTAAAC+GGG + chr3_1:24614380-24614399 Msa0353900:CDS 45.0%
ATGCACGTTACAAGACCACT+TGG - chr3_1:24614540-24614559 None:intergenic 45.0%
! ACCCCTAAGCTTTTGATCCA+AGG - chr3_1:24614569-24614588 None:intergenic 45.0%
AGTTGCATTGCAGCTGTTGT+AGG + chr3_1:24614953-24614972 Msa0353900:intron 45.0%
!!! GTTTTGGCGTTGACATGCTA+TGG + chr3_1:24615036-24615055 Msa0353900:intron 45.0%
TTGTGGCTGATCACATTACG+AGG + chr3_1:24615141-24615160 Msa0353900:intron 45.0%
TCAAAGACTGTCTGGTAGAC+CGG + chr3_1:24615209-24615228 Msa0353900:intron 45.0%
! CGGTGCTAACTACAAAGTGT+TGG + chr3_1:24615229-24615248 Msa0353900:intron 45.0%
GTACACTTCCAGAAACGTGT+AGG + chr3_1:24615569-24615588 Msa0353900:intron 45.0%
GTCTAATGGCAAAAGAGGCT+TGG - chr3_1:24615849-24615868 None:intergenic 45.0%
TATTATAGCCGTTCGAGAGG+AGG + chr3_1:24616223-24616242 Msa0353900:intron 45.0%
AAGATGCAACAGCCAATCCT+GGG - chr3_1:24616334-24616353 None:intergenic 45.0%
GCTGTCACAGTAAATGGTGA+GGG - chr3_1:24617155-24617174 None:intergenic 45.0%
AGCTGTCACAGTAAATGGTG+AGG - chr3_1:24617156-24617175 None:intergenic 45.0%
GGAGCTCTGTTCCATTGAAA+CGG + chr3_1:24617190-24617209 Msa0353900:CDS 45.0%
GAAGCAGCTAAGAAAGCTTC+TGG + chr3_1:24617317-24617336 Msa0353900:CDS 45.0%
TAGGATTATACAGGTGGAGG+TGG - chr3_1:24617419-24617438 None:intergenic 45.0%
!!! TAATTATTTTTATATACTTT+GGG - chr3_1:24613587-24613606 None:intergenic 5.0%
!! ATTTATAAAAAGAAAAAAAA+AGG + chr3_1:24614849-24614868 Msa0353900:intron 5.0%
!! AGAGTTTGGTGGTGATGACG+GGG - chr3_1:24612379-24612398 None:intergenic 50.0%
!! GAGAGTTTGGTGGTGATGAC+GGG - chr3_1:24612380-24612399 None:intergenic 50.0%
!! GGAGAGTTTGGTGGTGATGA+CGG - chr3_1:24612381-24612400 None:intergenic 50.0%
ACTTAAGCTCCCGCATATGC+AGG + chr3_1:24613155-24613174 Msa0353900:intron 50.0%
CTTAAGCTCCCGCATATGCA+GGG + chr3_1:24613156-24613175 Msa0353900:intron 50.0%
ACCACGATTGAGGCTTCATC+GGG - chr3_1:24613404-24613423 None:intergenic 50.0%
ACGTATGGTGTCCTATGGTG+AGG - chr3_1:24613841-24613860 None:intergenic 50.0%
GTAACGTGCATGCCAAACCT+TGG + chr3_1:24614549-24614568 Msa0353900:intron 50.0%
!! CTTCCTTTTCAGAGGTGCAC+CGG + chr3_1:24615712-24615731 Msa0353900:intron 50.0%
GAAGACCTTGATCCCAGGAT+TGG + chr3_1:24616319-24616338 Msa0353900:CDS 50.0%
AACAGCCAATCCTGGGATCA+AGG - chr3_1:24616327-24616346 None:intergenic 50.0%
GAAGATGCAACAGCCAATCC+TGG - chr3_1:24616335-24616354 None:intergenic 50.0%
ACGAGCAGTGTCCGTTTCAA+TGG - chr3_1:24617204-24617223 None:intergenic 50.0%
GCAGCTAAGAAAGCTTCTGG+AGG + chr3_1:24617320-24617339 Msa0353900:CDS 50.0%
!! TTTGGTGGTGATGACGGGGT+TGG - chr3_1:24612375-24612394 None:intergenic 55.0%
ATGCGGGAGCTTAAGTGCAC+CGG - chr3_1:24613151-24613170 None:intergenic 55.0%
TTCCCGAACCCTGCATATGC+GGG - chr3_1:24613167-24613186 None:intergenic 55.0%
CTTCCCGAACCCTGCATATG+CGG - chr3_1:24613168-24613187 None:intergenic 55.0%
GCATATGCAGGGTTCGGGAA+GGG + chr3_1:24613167-24613186 Msa0353900:intron 55.0%
CATATGCAGGGTTCGGGAAG+GGG + chr3_1:24613168-24613187 Msa0353900:intron 55.0%
CTGCAACGCAACCACGATTG+AGG - chr3_1:24613414-24613433 None:intergenic 55.0%
TGCGGCCAAAATCTAGGCCA+TGG - chr3_1:24613464-24613483 None:intergenic 55.0%
GTGTATGTCTGCTGCGTTGC+AGG + chr3_1:24614310-24614329 Msa0353900:intron 55.0%
GAAATGTGGGGGATTGGGGA+AGG + chr3_1:24615598-24615617 Msa0353900:intron 55.0%
! ACACCGGTGCACCTCTGAAA+AGG - chr3_1:24615718-24615737 None:intergenic 55.0%
GACGAGAAGACCTTGATCCC+AGG + chr3_1:24616314-24616333 Msa0353900:CDS 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr3_1:24616446-24616465 Msa0353900:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr3_1:24616447-24616466 Msa0353900:intron 55.0%
TGCGGGAGCTTAAGTGCACC+GGG - chr3_1:24613150-24613169 None:intergenic 60.0%
GCTCCCGCATATGCAGGGTT+CGG + chr3_1:24613161-24613180 Msa0353900:intron 60.0%
CTCCCGCATATGCAGGGTTC+GGG + chr3_1:24613162-24613181 Msa0353900:intron 60.0%
CGCATATGCAGGGTTCGGGA+AGG + chr3_1:24613166-24613185 Msa0353900:intron 60.0%
GCCCGATGAAGCCTCAATCG+TGG + chr3_1:24613400-24613419 Msa0353900:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - chr3_1:24616442-24616461 None:intergenic 60.0%
TGACCCGGACCCTGCATATG+CGG - chr3_1:24616459-24616478 None:intergenic 60.0%
GGCTGAGGCCTCCTCTCGAA+CGG - chr3_1:24616234-24616253 None:intergenic 65.0%
AGAGGAGGCCTCAGCCTCAG+AGG + chr3_1:24616238-24616257 Msa0353900:CDS 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG - chr3_1:24616441-24616460 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr3_1:24616452-24616471 Msa0353900:intron 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr3_1:24616453-24616472 Msa0353900:intron 65.0%
GACCCGGACCCTGCATATGC+GGG - chr3_1:24616458-24616477 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 24612263 24617646 24612263 ID=Msa0353900;Name=Msa0353900
chr3_1 mRNA 24612263 24617646 24612263 ID=Msa0353900-mRNA-1;Parent=Msa0353900;Name=Msa0353900-mRNA-1;_AED=0.24;_eAED=0.24;_QI=54|1|1|1|1|1|5|213|380
chr3_1 exon 24612263 24612813 24612263 ID=Msa0353900-mRNA-1:exon:5420;Parent=Msa0353900-mRNA-1
chr3_1 exon 24614332 24614401 24614332 ID=Msa0353900-mRNA-1:exon:5421;Parent=Msa0353900-mRNA-1
chr3_1 exon 24615770 24615941 24615770 ID=Msa0353900-mRNA-1:exon:5422;Parent=Msa0353900-mRNA-1
chr3_1 exon 24616231 24616374 24616231 ID=Msa0353900-mRNA-1:exon:5423;Parent=Msa0353900-mRNA-1
chr3_1 exon 24617174 24617646 24617174 ID=Msa0353900-mRNA-1:exon:5424;Parent=Msa0353900-mRNA-1
chr3_1 five_prime_UTR 24612263 24612316 24612263 ID=Msa0353900-mRNA-1:five_prime_utr;Parent=Msa0353900-mRNA-1
chr3_1 CDS 24612317 24612813 24612317 ID=Msa0353900-mRNA-1:cds;Parent=Msa0353900-mRNA-1
chr3_1 CDS 24614332 24614401 24614332 ID=Msa0353900-mRNA-1:cds;Parent=Msa0353900-mRNA-1
chr3_1 CDS 24615770 24615941 24615770 ID=Msa0353900-mRNA-1:cds;Parent=Msa0353900-mRNA-1
chr3_1 CDS 24616231 24616374 24616231 ID=Msa0353900-mRNA-1:cds;Parent=Msa0353900-mRNA-1
chr3_1 CDS 24617174 24617433 24617174 ID=Msa0353900-mRNA-1:cds;Parent=Msa0353900-mRNA-1
chr3_1 three_prime_UTR 24617434 24617646 24617434 ID=Msa0353900-mRNA-1:three_prime_utr;Parent=Msa0353900-mRNA-1
Gene Sequence

>Msa0353900

ATGGCTACTCTAAGCTTCAACACCACAAGAATCAAAACCCCATCTTTCAACTACACCAACCCCGTCATCACCACCAAACTCTCCTCTTCAAAATCCATCATCAAATTCCCATTTTCCTCCAACAAAAACCACTTCCTTAAACTCCAAACATGTTCTGTCTCAGAAACCTCATCATCAACAACAACAACACAGAAAGACATTGAAGAAGAAGAAGAAGAAGAAGAGAAAGAAGACCCAACTGCTGAAACATGTTATCTTGACCCAGAAGCTGATCCTGACAGTATATTAAGCTGGGAGTTGGATTTTTGTTCTAGACCAATTCTTGATGCTAGAGGAAAGAAACTTTGGGAGCTTGTTGTTTGTGATAAATCTCTTTCACTTCAATATACTAAGTATTTTCCTAATAATGTTATTAATAGTATCACTCTCAAGGATTCTATTGTTGCTATTTGTGATGAACTGGATCTACCTGTGCCTAGAAACATTCGCTTCTTTAGGTCACAGATGCAAACAATTATTACAAAAGCATGTAAGGAGCTGGGCATAAGAGCTCTTCCCAGTAAACGGTGCTTGTCATTACTTTTATGGTTAGAGGAACGCTATGAGACTGTATACACGAAACATCCTGGATTTCAAAAGGGATCCAAGCCTCTTTTGCCATTAGACAATCCTTTTGCGACAAAACTTCCAGAAGATCTTTTTGGTGAAAGATGGGCTTTTGTTCAGTTACCTTACTCAGCCGTTCGAGAGGAGGCCTCAGCCTCAGAGGAAAGATTTGGATATGGTTCTGGGCTAGATCTTGATTTATTGGGTATTGAAATTGACGAGAAGACCTTGATCCCAGGATTGGCTGTTGCATCTTCTCGTGCTAAAATATTATCAGCTTTTATGAATGGATTGGAGCTCTGTTCCATTGAAACGGACACTGCTCGTTCTAACCTGACTCTTTCAGTTGGAATTTCGACTCGGTATGTATATGCGACCTATAAGAAAAGTCCTACCTCAACTAAAGAAGCTGAAGCTTGGGAAGCAGCTAAGAAAGCTTCTGGAGGTTTGCATTTCCTAGCAATCCAAGATGAGTTAGATTCTGAAGATTGTATTGGCTTCTGGCTTTTGCTAGACTTGCCACCTCCACCTGTATAA

Protein sequence

>Msa0353900

MATLSFNTTRIKTPSFNYTNPVITTKLSSSKSIIKFPFSSNKNHFLKLQTCSVSETSSSTTTTQKDIEEEEEEEEKEDPTAETCYLDPEADPDSILSWELDFCSRPILDARGKKLWELVVCDKSLSLQYTKYFPNNVINSITLKDSIVAICDELDLPVPRNIRFFRSQMQTIITKACKELGIRALPSKRCLSLLLWLEERYETVYTKHPGFQKGSKPLLPLDNPFATKLPEDLFGERWAFVQLPYSAVREEASASEERFGYGSGLDLDLLGIEIDEKTLIPGLAVASSRAKILSAFMNGLELCSIETDTARSNLTLSVGISTRYVYATYKKSPTSTKEAEAWEAAKKASGGLHFLAIQDELDSEDCIGFWLLLDLPPPPV*