AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0720850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720850 MtrunA17_Chr5g0411661 99.228 518 4 0 41 558 1 518 0.0 1063
Msa0720850 MtrunA17_Chr5g0428001 83.789 512 74 1 43 554 1 503 0.0 887
Msa0720850 MtrunA17_Chr2g0285171 59.825 458 175 2 92 548 83 532 0.0 572
Msa0720850 MtrunA17_Chr8g0378091 58.190 464 187 4 93 554 9 467 0.0 551
Msa0720850 MtrunA17_Chr3g0121851 58.405 464 186 4 93 554 9 467 0.0 550
Msa0720850 MtrunA17_Chr2g0277581 54.140 471 201 6 87 550 130 592 4.98e-172 500
Msa0720850 MtrunA17_Chr3g0115291 53.291 471 202 6 86 549 116 575 2.13e-169 493
Msa0720850 MtrunA17_Chr7g0268951 64.571 175 62 0 121 295 1 175 6.17e-76 238
Msa0720850 MtrunA17_Chr1g0186271 37.048 332 151 7 211 541 10 284 3.19e-55 189
Msa0720850 MtrunA17_Chr7g0268941 46.358 151 80 1 400 549 16 166 6.25e-38 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720850 AT4G37930.1 88.911 514 56 1 41 554 1 513 0.0 963
Msa0720850 AT5G26780.1 85.575 513 73 1 43 554 1 513 0.0 919
Msa0720850 AT5G26780.4 85.575 513 73 1 43 554 1 513 0.0 919
Msa0720850 AT5G26780.2 83.176 529 72 2 43 554 1 529 0.0 910
Msa0720850 AT5G26780.3 83.176 529 72 2 43 554 1 529 0.0 910
Msa0720850 AT4G32520.2 58.753 497 187 6 62 548 40 528 0.0 602
Msa0720850 AT4G32520.1 58.753 497 187 6 62 548 40 528 0.0 602
Msa0720850 AT4G13930.1 57.974 464 188 4 93 554 9 467 0.0 548
Msa0720850 AT4G13890.1 56.209 459 194 4 93 549 9 462 0.0 526
Msa0720850 AT4G13890.2 59.008 383 155 2 93 473 9 391 5.55e-164 473
Msa0720850 AT1G36370.1 49.797 492 230 6 61 544 106 588 6.48e-164 480
Msa0720850 AT1G22020.2 49.393 494 235 6 64 550 113 598 3.08e-162 476
Msa0720850 AT1G22020.1 49.393 494 235 6 64 550 113 598 3.08e-162 476

Find 132 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGATGCATCTGTGAATT+TGG 0.197823 5_1:-17101014 Msa0720850:CDS
TTCGGTTGGATCCAGCTAAA+TGG 0.224913 5_1:-17103652 Msa0720850:CDS
AAAGGTTATGAGCTTGTTTC+TGG 0.242132 5_1:-17101605 Msa0720850:CDS
GTTAAGGTGTGGAGAATTAC+AGG 0.254763 5_1:+17105414 None:intergenic
ATAATTAGGAACAAAATTAA+AGG 0.266678 5_1:-17100846 Msa0720850:intron
TTTGGTGAATCTCAAGAATA+AGG 0.268021 5_1:-17101561 Msa0720850:intron
ATTATAATTATTTATTGAAA+TGG 0.287304 5_1:-17105294 Msa0720850:exon
CTATGGTTCCTGGTGGTATC+AGG 0.288605 5_1:-17101190 Msa0720850:CDS
GTTCAATAAAATCTATGATT+TGG 0.298460 5_1:+17105258 None:intergenic
CCTCACAACCATACCATTAC+TGG 0.309322 5_1:-17102129 Msa0720850:CDS
AGCTGTGATGTTAGCAGATA+TGG 0.329731 5_1:-17102537 Msa0720850:CDS
AGGAAGTTGCTTATCCAAAC+AGG 0.336766 5_1:+17100142 None:intergenic
TCAATAATATCAGCAATTTC+AGG 0.336823 5_1:+17104544 None:intergenic
AATTTCATTTGGACCCTGTT+TGG 0.342033 5_1:-17100156 Msa0720850:three_prime_UTR
GTTTATGCTATAACTGCTTA+AGG 0.353417 5_1:+17100122 None:intergenic
GATGTGTCTGCTATGGTTCC+TGG 0.354698 5_1:-17101200 Msa0720850:CDS
CAAAGAGAATTCACGTGTTT+CGG 0.355000 5_1:-17104906 Msa0720850:intron
GTGCTTTCATCCAATCTATA+TGG 0.358204 5_1:+17102939 None:intergenic
ATAACACTTGCGAGACTGTT+TGG 0.361534 5_1:+17099953 None:intergenic
ATGCTTCCAAGGCACGCTTT+TGG 0.362934 5_1:+17103675 None:intergenic
TTCTTACCTCCCCATTTAGC+TGG 0.365927 5_1:+17103641 None:intergenic
TGAGACAATGCCATATAGAT+TGG 0.372179 5_1:-17102949 Msa0720850:CDS
GACTGAGAATCATCTAGTTT+TGG 0.372451 5_1:-17101579 Msa0720850:CDS
AGAAATCTGCTACCCTCTTC+AGG 0.373752 5_1:-17102777 Msa0720850:CDS
TCGGTTGGATCCAGCTAAAT+GGG 0.380732 5_1:-17103651 Msa0720850:CDS
AGTGGAGAATTCAATTGCTT+TGG 0.389470 5_1:+17104580 None:intergenic
AGGCCAAAACTAATTGTTGC+TGG 0.397586 5_1:-17102757 Msa0720850:CDS
GCACCAGCAACAATTAGTTT+TGG 0.398596 5_1:+17102754 None:intergenic
TCATCTTAAATTAAGTGTTA+AGG 0.415196 5_1:+17105398 None:intergenic
AAATACAGTGAAGGTTATCC+TGG 0.420592 5_1:-17103889 Msa0720850:CDS
CTCAACATCATGACGAAGCT+TGG 0.426845 5_1:+17100775 None:intergenic
TTGTCATACACAGCTTCATC+AGG 0.428660 5_1:+17104926 None:intergenic
ATCAATCAAGCTGTCTTCCC+TGG 0.430141 5_1:-17102165 Msa0720850:CDS
TATAGCAGATGAAAAGCATT+AGG 0.436447 5_1:-17100314 Msa0720850:three_prime_UTR
TGAGGACCACCTTGCAGTCC+AGG 0.439744 5_1:+17102147 None:intergenic
AGCGTGCCTTGGAAGCATTT+CGG 0.445650 5_1:-17103670 Msa0720850:CDS
GAACTCCTGCTCTTACTTCA+AGG 0.449715 5_1:-17101075 Msa0720850:CDS
CTATCTGTTATGCAAGCTGT+TGG 0.456660 5_1:-17103928 Msa0720850:CDS
GGCAGTGGTGGTAAAGATTA+TGG 0.456864 5_1:-17100390 Msa0720850:intron
AGTCTCAGAGATGAGATAGA+TGG 0.472546 5_1:+17105181 None:intergenic
TATCCTGGAGCAAGATATTA+CGG 0.473262 5_1:-17103874 Msa0720850:CDS
CGTCGAGGAGGATTTCGTTA+AGG 0.474022 5_1:-17101047 Msa0720850:CDS
GTGAACGTGCAGCCTTTGTC+TGG 0.476132 5_1:-17103349 Msa0720850:CDS
CCTCCGTAATATCTTGCTCC+AGG 0.483511 5_1:+17103871 None:intergenic
CAATGGCAATGGCTCTTCGC+AGG 0.486463 5_1:-17105151 Msa0720850:CDS
TGCCTTGGAAGCATTTCGGT+TGG 0.492777 5_1:-17103666 Msa0720850:CDS
GCAAAACAATTCCCAACCAT+TGG 0.494544 5_1:-17100746 Msa0720850:CDS
TTTAGCTGTTGCGTTGAAGC+AGG 0.495619 5_1:-17102106 Msa0720850:intron
ACAACTCACAAGTCACTTCG+TGG 0.500888 5_1:-17102443 Msa0720850:CDS
TCTTGGTATGCTTTATACTC+TGG 0.501564 5_1:+17101784 None:intergenic
GAATTTGGCTTTGAAGATCA+AGG 0.509614 5_1:-17100999 Msa0720850:CDS
GCTGTCTTCCCTGGACTGCA+AGG 0.511974 5_1:-17102156 Msa0720850:CDS
GGTTCCTGGTGGTATCAGGA+TGG 0.513253 5_1:-17101186 Msa0720850:CDS
CGCAACAGCTAAACCAGTAA+TGG 0.514440 5_1:+17102116 None:intergenic
CAAGCTTCGTCATGATGTTG+AGG 0.517604 5_1:-17100774 Msa0720850:CDS
TGCTTCTTCTGTTTACTACA+AGG 0.517801 5_1:-17105087 Msa0720850:intron
ACTACATCTGCATAATCAAA+AGG 0.519854 5_1:+17102473 None:intergenic
GCAATTGAATTCTCCACTTG+AGG 0.521875 5_1:-17104575 Msa0720850:CDS
GCAGATGAAAAGCATTAGGC+TGG 0.522187 5_1:-17100310 Msa0720850:three_prime_UTR
TCAGGATCAATTTCCTCAAG+TGG 0.525701 5_1:+17104562 None:intergenic
TCCTGGAGATGTGTCTGCTA+TGG 0.527373 5_1:-17101207 Msa0720850:CDS
ACATCTTTCTCATGGTTACC+AGG 0.529057 5_1:-17103245 Msa0720850:intron
GGTTATGAGCTTGTTTCTGG+TGG 0.529989 5_1:-17101602 Msa0720850:CDS
ACTATGCCAAAAGCGTGCCT+TGG 0.531463 5_1:-17103681 Msa0720850:CDS
GAAGGTGTTCTATGACTATG+AGG 0.531695 5_1:-17102193 Msa0720850:intron
ACCATAGCAGACACATCTCC+AGG 0.532051 5_1:+17101206 None:intergenic
TTGCAGGCTCTGAGTGAGAA+AGG 0.532506 5_1:-17101623 Msa0720850:intron
GTATAAAGCATACCAAGAGC+AGG 0.537001 5_1:-17101779 Msa0720850:CDS
CATGGAGGACATCTTTCTCA+TGG 0.540963 5_1:-17103253 Msa0720850:CDS
ATGGCACTTGATCTCCCTCA+TGG 0.541789 5_1:-17103271 Msa0720850:CDS
GAAACCTCATGATAGAATCA+TGG 0.544843 5_1:-17103290 Msa0720850:CDS
GTTCCTGGTGGTATCAGGAT+GGG 0.544981 5_1:-17101185 Msa0720850:intron
TTAAATTAAGTGTTAAGGTG+TGG 0.547577 5_1:+17105403 None:intergenic
CAGCTAAACCAGTAATGGTA+TGG 0.548948 5_1:+17102121 None:intergenic
AATTGCTGAGAACCTGCTCT+TGG 0.549215 5_1:+17101767 None:intergenic
ATCAGTGGACTGGTTGCAGC+TGG 0.551421 5_1:-17102509 Msa0720850:CDS
AGTCAACAAACAAGGAAAAG+AGG 0.553974 5_1:-17102378 Msa0720850:intron
GTCAAGCAGTCCATTGTGAT+CGG 0.558816 5_1:-17100368 Msa0720850:CDS
AACTCCTGCTCTTACTTCAA+GGG 0.559611 5_1:-17101074 Msa0720850:CDS
CAATTGCGCAAAATTTGCAC+AGG 0.560674 5_1:-17101749 Msa0720850:intron
GTGTAAACATGAAAATTTGA+AGG 0.561653 5_1:+17103322 None:intergenic
AAAATCTATGATTTGGTGGA+TGG 0.563278 5_1:+17105265 None:intergenic
TTCCAACACCTTCTCAACTC+TGG 0.563616 5_1:+17101262 None:intergenic
AAGATCAAGGCAGAGAGCAA+AGG 0.565204 5_1:-17100986 Msa0720850:intron
GTTATGAGCTTGTTTCTGGT+GGG 0.566698 5_1:-17101601 Msa0720850:CDS
TGAGAAAGCTAGACAATGGA+AGG 0.567432 5_1:-17104518 Msa0720850:intron
CTGAAAACAGCTTATGAACA+TGG 0.567587 5_1:-17099998 Msa0720850:three_prime_UTR
TATAGATTGGATGAAAGCAC+AGG 0.570064 5_1:-17102936 Msa0720850:CDS
GACTGAGATGGCAATGGCAA+TGG 0.570093 5_1:-17105162 Msa0720850:CDS
CAATAAAATCTATGATTTGG+TGG 0.572369 5_1:+17105261 None:intergenic
TCTGCATAATCAAAAGGTGA+AGG 0.572432 5_1:+17102479 None:intergenic
TTTCTGATTAATGGAAGAGG+AGG 0.573198 5_1:-17100343 Msa0720850:exon
CTCTGAGACTGAGATGGCAA+TGG 0.579939 5_1:-17105168 Msa0720850:CDS
AATCTCTGACTGCACGTAGG+AGG 0.581158 5_1:+17100799 None:intergenic
TTCCGCCATAATCTAAAACA+AGG 0.582542 5_1:+17105660 None:intergenic
CTCCAGAGTTGAGAAGGTGT+TGG 0.584928 5_1:-17101264 Msa0720850:CDS
TGATGGCTCCAGAGTTGAGA+AGG 0.585979 5_1:-17101270 Msa0720850:CDS
AATCCCCTTGAAGTAAGAGC+AGG 0.586622 5_1:+17101070 None:intergenic
ACTCCTGCTCTTACTTCAAG+GGG 0.596470 5_1:-17101073 Msa0720850:CDS
CTGCATAATCAAAAGGTGAA+GGG 0.596849 5_1:+17102480 None:intergenic
CCAGTAATGGTATGGTTGTG+AGG 0.597553 5_1:+17102129 None:intergenic
TATGGCACATATCAGTGGAC+TGG 0.602613 5_1:-17102519 Msa0720850:CDS
TCTCATCTCTGAGACTGAGA+TGG 0.609312 5_1:-17105174 Msa0720850:CDS
ATCCAACCGAAATGCTTCCA+AGG 0.610410 5_1:+17103664 None:intergenic
TGATTATGCACGCATTCGCA+AGG 0.614686 5_1:-17102710 Msa0720850:intron
GCAGATATGGCACATATCAG+TGG 0.614862 5_1:-17102524 Msa0720850:CDS
GAGAAAGATGTCCTCCATGA+GGG 0.617557 5_1:+17103257 None:intergenic
TACTTCAAGGGGATTCGTCG+AGG 0.620380 5_1:-17101062 Msa0720850:CDS
AGCTTGAGAAAGCTAGACAA+TGG 0.621507 5_1:-17104522 Msa0720850:CDS
ATAATCATACAGACGTGCAT+AGG 0.625798 5_1:+17102726 None:intergenic
TCAGAGATGAGATAGATGGA+TGG 0.626842 5_1:+17105185 None:intergenic
GTCTTCCCTGGACTGCAAGG+TGG 0.628225 5_1:-17102153 Msa0720850:CDS
TTCAAGGGGATTCGTCGAGG+AGG 0.629218 5_1:-17101059 Msa0720850:CDS
ATGACAAACAAATACAGTGA+AGG 0.630108 5_1:-17103898 Msa0720850:CDS
ACAGAAGAAGCACTGAAGAG+AGG 0.631325 5_1:+17105098 None:intergenic
TTTGAAGGTGAACCAGACAA+AGG 0.639590 5_1:+17103337 None:intergenic
ACGAAGTGACTTGTGAGTTG+TGG 0.643535 5_1:+17102445 None:intergenic
CGGTTGGATCCAGCTAAATG+GGG 0.647808 5_1:-17103650 Msa0720850:CDS
GAGGACCACCTTGCAGTCCA+GGG 0.648946 5_1:+17102148 None:intergenic
GGAAGTTGCTTATCCAAACA+GGG 0.651924 5_1:+17100143 None:intergenic
AGTGCCATGATTCTATCATG+AGG 0.654392 5_1:+17103286 None:intergenic
ATACCCATCCTGATACCACC+AGG 0.659126 5_1:+17101182 None:intergenic
TTAAAAGAAGTCAACAAACA+AGG 0.661947 5_1:-17102386 Msa0720850:CDS
AAGTCACTTCGTGGACCACG+TGG 0.667056 5_1:-17102434 Msa0720850:CDS
TTGGATCCAGCTAAATGGGG+AGG 0.668787 5_1:-17103647 Msa0720850:intron
TGAGAAAGATGTCCTCCATG+AGG 0.670745 5_1:+17103256 None:intergenic
AGGATACATTGATTATGACC+AGG 0.672531 5_1:-17102916 Msa0720850:intron
TCATTACAGATATATTGACA+TGG 0.693044 5_1:-17103711 Msa0720850:intron
GCACTTGATCTCCCTCATGG+AGG 0.702241 5_1:-17103268 Msa0720850:CDS
GGAAATCTCTGACTGCACGT+AGG 0.709632 5_1:+17100796 None:intergenic
GTGTCTGCTATGGTTCCTGG+TGG 0.714961 5_1:-17101197 Msa0720850:CDS
CCTGGAGCAAGATATTACGG+AGG 0.734873 5_1:-17103871 Msa0720850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTGAACAAAATAAAA+AGG - chr5_1:17100423-17100442 Msa0720850:intron 10.0%
!! AATTTATATTTAGAAAATCA+CGG + chr5_1:17103005-17103024 None:intergenic 10.0%
!!! TTACATTTACATTTTATTTG+AGG + chr5_1:17100047-17100066 None:intergenic 15.0%
!! AAAAAGAGATATGTTATTAA+TGG + chr5_1:17100705-17100724 None:intergenic 15.0%
!!! AATATGTTATTTTTTTTCAG+TGG - chr5_1:17101066-17101085 Msa0720850:CDS 15.0%
!! ATGTATATATTTGTTTAGTA+TGG - chr5_1:17101239-17101258 Msa0720850:CDS 15.0%
!!! GATTTTTTAATATGTTAGAA+TGG - chr5_1:17102264-17102283 Msa0720850:intron 15.0%
!!! ATAAAAAATGAATTTTGTTC+AGG + chr5_1:17103331-17103350 None:intergenic 15.0%
!! AATAAATCGAAAAATAATGA+TGG - chr5_1:17103588-17103607 Msa0720850:intron 15.0%
!!! ATTTTTTTAGCTTAAGAAAA+GGG - chr5_1:17103717-17103736 Msa0720850:intron 15.0%
!!! TTTTCAAAAAAACTTTTTTC+AGG - chr5_1:17104372-17104391 Msa0720850:intron 15.0%
!!! TTTCAAAAAAACTTTTTTCA+GGG - chr5_1:17104373-17104392 Msa0720850:intron 15.0%
!! ATAATTAGGAACAAAATTAA+AGG - chr5_1:17104823-17104842 Msa0720850:intron 15.0%
!! TCATCTTAAATTAAGTGTTA+AGG + chr5_1:17100274-17100293 None:intergenic 20.0%
!! GTTCAATAAAATCTATGATT+TGG + chr5_1:17100414-17100433 None:intergenic 20.0%
!! TTAATGATTATGTACATGTT+TGG - chr5_1:17100825-17100844 Msa0720850:CDS 20.0%
!! ACAAGAAACATATTAATATC+TGG + chr5_1:17100971-17100990 None:intergenic 20.0%
!!! GGTTATTTGATTATATGTTT+TGG - chr5_1:17101031-17101050 Msa0720850:CDS 20.0%
!! AAATCTGTGATTTAATAGAA+CGG + chr5_1:17101352-17101371 None:intergenic 20.0%
!! AGATGCAAAAGATTAATAAT+GGG + chr5_1:17101458-17101477 None:intergenic 20.0%
!! AAGATGCAAAAGATTAATAA+TGG + chr5_1:17101459-17101478 None:intergenic 20.0%
!! TGATTGTGTGTTAAAATATT+TGG - chr5_1:17101567-17101586 Msa0720850:CDS 20.0%
!!! ACTTGGATGTTTTATTATTT+CGG - chr5_1:17101677-17101696 Msa0720850:intron 20.0%
!! AAAAACAACAGATTATAAGA+AGG + chr5_1:17103031-17103050 None:intergenic 20.0%
!! GAACTTACATAAATATTTGT+AGG + chr5_1:17103413-17103432 None:intergenic 20.0%
!! AATTCTTCTTACTTATTTGA+AGG - chr5_1:17103458-17103477 Msa0720850:intron 20.0%
!!! CATTTTTTTAGCTTAAGAAA+AGG - chr5_1:17103716-17103735 Msa0720850:intron 20.0%
!! AATAACATTAAATATGTTGC+AGG - chr5_1:17104030-17104049 Msa0720850:intron 20.0%
!! AACATAATATATATACCTGA+TGG + chr5_1:17104998-17105017 None:intergenic 20.0%
!! GTATATATATTATGTTGATG+AGG - chr5_1:17105002-17105021 Msa0720850:intron 20.0%
!! TTATTCTCTTCATTATATTG+AGG + chr5_1:17105076-17105095 None:intergenic 20.0%
!!! CAATGTTTTCAAATTTCATT+TGG - chr5_1:17105502-17105521 Msa0720850:five_prime_UTR 20.0%
! TTAAATTAAGTGTTAAGGTG+TGG + chr5_1:17100269-17100288 None:intergenic 25.0%
!! CAATAAAATCTATGATTTGG+TGG + chr5_1:17100411-17100430 None:intergenic 25.0%
! TCAATAATATCAGCAATTTC+AGG + chr5_1:17101128-17101147 None:intergenic 25.0%
! AAATTCACTGATAAGTTAGT+CGG - chr5_1:17101265-17101284 Msa0720850:CDS 25.0%
! TTAGAGATAATCTTGTAATC+TGG - chr5_1:17101325-17101344 Msa0720850:intron 25.0%
! GATGCAAAAGATTAATAATG+GGG + chr5_1:17101457-17101476 None:intergenic 25.0%
! ATTCTATCTTAAAGAGAACT+TGG - chr5_1:17101660-17101679 Msa0720850:intron 25.0%
!!! ATGTTTTATTATTTCGGTGA+AGG - chr5_1:17101683-17101702 Msa0720850:intron 25.0%
!!! TGTTTTATTATTTCGGTGAA+GGG - chr5_1:17101684-17101703 Msa0720850:intron 25.0%
! TGCTTGTCTTGAATAATTTA+AGG - chr5_1:17101854-17101873 Msa0720850:intron 25.0%
!! ACTGAATAGAGTAATCATTT+TGG - chr5_1:17101882-17101901 Msa0720850:intron 25.0%
!!! AAGATGCACAATTTTTTAGT+TGG + chr5_1:17101936-17101955 None:intergenic 25.0%
! TCATTACAGATATATTGACA+TGG - chr5_1:17101958-17101977 Msa0720850:intron 25.0%
! AAGTATAATATCGCTTGTTT+GGG - chr5_1:17102099-17102118 Msa0720850:intron 25.0%
!!! TCAAATTTTAACAAGCAAAG+CGG + chr5_1:17102210-17102229 None:intergenic 25.0%
! GTGTAAACATGAAAATTTGA+AGG + chr5_1:17102350-17102369 None:intergenic 25.0%
! ATTGTAGATTTCACTATAAC+AGG + chr5_1:17102475-17102494 None:intergenic 25.0%
! ATAATGCTCATTTCTAAGTT+AGG - chr5_1:17102799-17102818 Msa0720850:intron 25.0%
! TTATATTTAGAAAATCACGG+TGG + chr5_1:17103002-17103021 None:intergenic 25.0%
!!! TCTGTTGTTTTTAATTTGAG+CGG - chr5_1:17103039-17103058 Msa0720850:intron 25.0%
! TTAAAAGAAGTCAACAAACA+AGG - chr5_1:17103283-17103302 Msa0720850:CDS 25.0%
!! GAAGAATTAGTATCTCTTTT+TGG + chr5_1:17103446-17103465 None:intergenic 25.0%
! CTTCAATATCAAGAAAAATG+TGG + chr5_1:17103649-17103668 None:intergenic 25.0%
! TCTAGTATCACTCAAAAATT+TGG + chr5_1:17103772-17103791 None:intergenic 25.0%
!!! ATCTTTTGTTTTTCCATTTG+TGG - chr5_1:17103847-17103866 Msa0720850:intron 25.0%
! ATATAACAGACACAAAAGAA+GGG + chr5_1:17104726-17104745 None:intergenic 25.0%
! TCCTAATTATGAAAGTTCAT+CGG + chr5_1:17104813-17104832 None:intergenic 25.0%
!!! ATTTTTCAAAACCAATGGTT+GGG + chr5_1:17104937-17104956 None:intergenic 25.0%
! TAGATAGTATAACACAATTG+AGG + chr5_1:17105042-17105061 None:intergenic 25.0%
!! TTTCAAAAGCTTTTCAGTAA+TGG + chr5_1:17105195-17105214 None:intergenic 25.0%
!!! CTCTTCCTTGTTTTAGATTA+TGG - chr5_1:17100004-17100023 Msa0720850:three_prime_UTR 30.0%
!!! TTCCTTGTTTTAGATTATGG+CGG - chr5_1:17100007-17100026 Msa0720850:three_prime_UTR 30.0%
!! AAAATCTATGATTTGGTGGA+TGG + chr5_1:17100407-17100426 None:intergenic 30.0%
! TATGTACATGTTTGGAATCA+CGG - chr5_1:17100833-17100852 Msa0720850:CDS 30.0%
ATTAATATCTGGTGCATCTT+TGG + chr5_1:17100960-17100979 None:intergenic 30.0%
TTATCTCTAAACCATACCAT+GGG + chr5_1:17101315-17101334 None:intergenic 30.0%
ATTATCTCTAAACCATACCA+TGG + chr5_1:17101316-17101335 None:intergenic 30.0%
TTAACACACAATCAAACAGT+TGG + chr5_1:17101561-17101580 None:intergenic 30.0%
!! GTTTTATTATTTCGGTGAAG+GGG - chr5_1:17101685-17101704 Msa0720850:intron 30.0%
ATGACAAACAAATACAGTGA+AGG - chr5_1:17101771-17101790 Msa0720850:CDS 30.0%
!!! TTTTTTAGTTGGATTCAGTC+TGG + chr5_1:17101925-17101944 None:intergenic 30.0%
CAAGACAATAGTTTCTTTGT+TGG - chr5_1:17102053-17102072 Msa0720850:intron 30.0%
CAAGTATAATATCGCTTGTT+TGG - chr5_1:17102098-17102117 Msa0720850:intron 30.0%
TGAAATCTACAATCGATGTA+TGG - chr5_1:17102482-17102501 Msa0720850:CDS 30.0%
TATAGTCATGAATTCTGTCT+TGG - chr5_1:17102602-17102621 Msa0720850:intron 30.0%
TGTTTCATGAGTTCAACTTA+GGG + chr5_1:17103077-17103096 None:intergenic 30.0%
ATGTTTCATGAGTTCAACTT+AGG + chr5_1:17103078-17103097 None:intergenic 30.0%
AACATATTGCAACTTACAAC+AGG - chr5_1:17103093-17103112 Msa0720850:intron 30.0%
ACTACATCTGCATAATCAAA+AGG + chr5_1:17103199-17103218 None:intergenic 30.0%
ACAAAATGAGTTAATCTCTG+TGG + chr5_1:17104006-17104025 None:intergenic 30.0%
TTTGGTGAATCTCAAGAATA+AGG - chr5_1:17104108-17104127 Msa0720850:intron 30.0%
CTAATCATTTGCGTATTAGT+TGG - chr5_1:17104205-17104224 Msa0720850:intron 30.0%
!! AAACATCCATTTTTGTGGAT+CGG + chr5_1:17104307-17104326 None:intergenic 30.0%
!! AGATGAAACATCCATTTTTG+TGG + chr5_1:17104312-17104331 None:intergenic 30.0%
!!! AACTTTTTTCAGGGTATTGA+TGG - chr5_1:17104382-17104401 Msa0720850:intron 30.0%
GTTGATCTTGATAAATCTTG+TGG - chr5_1:17104564-17104583 Msa0720850:CDS 30.0%
TGATAAATCTTGTGGATTTC+AGG - chr5_1:17104572-17104591 Msa0720850:CDS 30.0%
GATATAACAGACACAAAAGA+AGG + chr5_1:17104727-17104746 None:intergenic 30.0%
ACCGATGAACTTTCATAATT+AGG - chr5_1:17104809-17104828 Msa0720850:intron 30.0%
!! GATTTTTCAAAACCAATGGT+TGG + chr5_1:17104938-17104957 None:intergenic 30.0%
GAAAAATGAAAGTTTCCATC+AGG - chr5_1:17104980-17104999 Msa0720850:intron 30.0%
ACTAGTAATCTGTTAACCTT+TGG - chr5_1:17105113-17105132 Msa0720850:CDS 30.0%
!! TCAGTAATGGACAAGAAAAA+CGG + chr5_1:17105182-17105201 None:intergenic 30.0%
!! TGATCGGTTTTTCTGATTAA+TGG - chr5_1:17105317-17105336 Msa0720850:five_prime_UTR 30.0%
! GTTTTTCTGATTAATGGAAG+AGG - chr5_1:17105323-17105342 Msa0720850:five_prime_UTR 30.0%
!! TATAGCAGATGAAAAGCATT+AGG - chr5_1:17105355-17105374 Msa0720850:five_prime_UTR 30.0%
GTTTATGCTATAACTGCTTA+AGG + chr5_1:17105550-17105569 None:intergenic 30.0%
! TTCCGCCATAATCTAAAACA+AGG + chr5_1:17100012-17100031 None:intergenic 35.0%
TGCTTCTTCTGTTTACTACA+AGG - chr5_1:17100582-17100601 Msa0720850:intron 35.0%
CAAAGAGAATTCACGTGTTT+CGG - chr5_1:17100763-17100782 Msa0720850:CDS 35.0%
CTTGTTAGAAAAGAGACTTG+TGG - chr5_1:17100986-17101005 Msa0720850:intron 35.0%
AAAGAGACTTGTGGATTTGA+TGG - chr5_1:17100995-17101014 Msa0720850:CDS 35.0%
!! TTTGATGGTTCTGATTGTGA+AGG - chr5_1:17101010-17101029 Msa0720850:CDS 35.0%
AGTGGAGAATTCAATTGCTT+TGG + chr5_1:17101092-17101111 None:intergenic 35.0%
! AGACAATGGAAGGTATACAT+AGG - chr5_1:17101161-17101180 Msa0720850:intron 35.0%
ATCAGAGATGTAGACACTAT+TGG - chr5_1:17101426-17101445 Msa0720850:intron 35.0%
!! CAGCTCTAAAGAAAACAGAT+AGG + chr5_1:17101493-17101512 None:intergenic 35.0%
!!! CTATCTGTTTTCTTTAGAGC+TGG - chr5_1:17101491-17101510 Msa0720850:intron 35.0%
! TGTTGTGAAGAAGCATGATA+TGG - chr5_1:17101598-17101617 Msa0720850:CDS 35.0%
GGTAGACGAAATTTCTCATT+AGG - chr5_1:17101619-17101638 Msa0720850:CDS 35.0%
! AGAGAAGTGAAGTTTTCTGA+TGG + chr5_1:17101723-17101742 None:intergenic 35.0%
AAATACAGTGAAGGTTATCC+TGG - chr5_1:17101780-17101799 Msa0720850:CDS 35.0%
TATCCTGGAGCAAGATATTA+CGG - chr5_1:17101795-17101814 Msa0720850:CDS 35.0%
GATTCAGTCTGGTACTTAAA+AGG + chr5_1:17101914-17101933 None:intergenic 35.0%
! TAAGGTTTGAAATCTGCAGT+TGG - chr5_1:17102184-17102203 Msa0720850:CDS 35.0%
GAAACCTCATGATAGAATCA+TGG - chr5_1:17102379-17102398 Msa0720850:CDS 35.0%
TCTACAATCGATGTATGGAT+TGG - chr5_1:17102487-17102506 Msa0720850:CDS 35.0%
!! TGCAGATATCTTTTTGGTGT+CGG + chr5_1:17102686-17102705 None:intergenic 35.0%
! AGAGACTGCAGATATCTTTT+TGG + chr5_1:17102692-17102711 None:intergenic 35.0%
TGAGACAATGCCATATAGAT+TGG - chr5_1:17102720-17102739 Msa0720850:CDS 35.0%
GTGCTTTCATCCAATCTATA+TGG + chr5_1:17102733-17102752 None:intergenic 35.0%
! TATAGATTGGATGAAAGCAC+AGG - chr5_1:17102733-17102752 Msa0720850:CDS 35.0%
! AGGATACATTGATTATGACC+AGG - chr5_1:17102753-17102772 Msa0720850:CDS 35.0%
AAAGAAACTGCAAACATACC+TGG + chr5_1:17102774-17102793 None:intergenic 35.0%
! GGTATGTTTGCAGTTTCTTT+TGG - chr5_1:17102774-17102793 Msa0720850:CDS 35.0%
!!! AATTAGTTTTGGCCTGAAGA+GGG + chr5_1:17102907-17102926 None:intergenic 35.0%
ATAATCATACAGACGTGCAT+AGG + chr5_1:17102946-17102965 None:intergenic 35.0%
CTGCATAATCAAAAGGTGAA+GGG + chr5_1:17103192-17103211 None:intergenic 35.0%
TCTGCATAATCAAAAGGTGA+AGG + chr5_1:17103193-17103212 None:intergenic 35.0%
!!! AGCTATGATCTTTTTCAGGA+AGG - chr5_1:17103258-17103277 Msa0720850:CDS 35.0%
!!! GCTATGATCTTTTTCAGGAA+GGG - chr5_1:17103259-17103278 Msa0720850:CDS 35.0%
AGTCAACAAACAAGGAAAAG+AGG - chr5_1:17103291-17103310 Msa0720850:CDS 35.0%
ATCAAGAAAAATGTGGACAG+TGG + chr5_1:17103642-17103661 None:intergenic 35.0%
TTAAGAAAAGGGTTTGTCTG+AGG - chr5_1:17103728-17103747 Msa0720850:intron 35.0%
TAAGAAAAGGGTTTGTCTGA+GGG - chr5_1:17103729-17103748 Msa0720850:intron 35.0%
! GTTTTTCCATTTGTGGATTC+AGG - chr5_1:17103854-17103873 Msa0720850:intron 35.0%
TCTTGGTATGCTTTATACTC+TGG + chr5_1:17103888-17103907 None:intergenic 35.0%
ATGTCAGTCAACACAACATA+AGG - chr5_1:17103962-17103981 Msa0720850:CDS 35.0%
TGTCAGTCAACACAACATAA+GGG - chr5_1:17103963-17103982 Msa0720850:CDS 35.0%
! AAAGGTTATGAGCTTGTTTC+TGG - chr5_1:17104064-17104083 Msa0720850:intron 35.0%
!! GACTGAGAATCATCTAGTTT+TGG - chr5_1:17104090-17104109 Msa0720850:intron 35.0%
CTCGACAATGCTTATATGTA+TGG + chr5_1:17104153-17104172 None:intergenic 35.0%
AGTTCGAGAGAACATTGTTA+TGG - chr5_1:17104269-17104288 Msa0720850:intron 35.0%
GCTAATAAAAACACTGTTCC+TGG - chr5_1:17104445-17104464 Msa0720850:intron 35.0%
CAAGATCAACTAGTTGAACA+AGG + chr5_1:17104554-17104573 None:intergenic 35.0%
TTTCGATGCATCTGTGAATT+TGG - chr5_1:17104655-17104674 Msa0720850:intron 35.0%
!! GAATTTGGCTTTGAAGATCA+AGG - chr5_1:17104670-17104689 Msa0720850:intron 35.0%
ATATTAGCTGTATGGTTGCT+TGG - chr5_1:17104764-17104783 Msa0720850:intron 35.0%
AGTAATCTGTTAACCTTTGG+TGG - chr5_1:17105116-17105135 Msa0720850:CDS 35.0%
AAATTCAGAACTTCCACCAA+AGG + chr5_1:17105132-17105151 None:intergenic 35.0%
TAAGATCAAACTTCTTCCAC+TGG - chr5_1:17105225-17105244 Msa0720850:CDS 35.0%
!! GACGTATTATGTTTGCTATG+TGG - chr5_1:17105258-17105277 Msa0720850:CDS 35.0%
ATCAGAAAAACCGATCACAA+TGG + chr5_1:17105314-17105333 None:intergenic 35.0%
TTTCTGATTAATGGAAGAGG+AGG - chr5_1:17105326-17105345 Msa0720850:five_prime_UTR 35.0%
AATTTCATTTGGACCCTGTT+TGG - chr5_1:17105513-17105532 Msa0720850:five_prime_UTR 35.0%
CTGAAAACAGCTTATGAACA+TGG - chr5_1:17105671-17105690 Msa0720850:five_prime_UTR 35.0%
GTTAAGGTGTGGAGAATTAC+AGG + chr5_1:17100258-17100277 None:intergenic 40.0%
TCAGAGATGAGATAGATGGA+TGG + chr5_1:17100487-17100506 None:intergenic 40.0%
AGTCTCAGAGATGAGATAGA+TGG + chr5_1:17100491-17100510 None:intergenic 40.0%
AGAGTGATGAGAAGTGAAGA+AGG + chr5_1:17100613-17100632 None:intergenic 40.0%
TTGTCATACACAGCTTCATC+AGG + chr5_1:17100746-17100765 None:intergenic 40.0%
! AACAAAATCACGTGTCACTG+CGG + chr5_1:17100873-17100892 None:intergenic 40.0%
CTGGTGCATCTTTGGATTAA+CGG + chr5_1:17100952-17100971 None:intergenic 40.0%
GCAATTGAATTCTCCACTTG+AGG - chr5_1:17101094-17101113 Msa0720850:intron 40.0%
TCAGGATCAATTTCCTCAAG+TGG + chr5_1:17101110-17101129 None:intergenic 40.0%
AGCTTGAGAAAGCTAGACAA+TGG - chr5_1:17101147-17101166 Msa0720850:intron 40.0%
TGAGAAAGCTAGACAATGGA+AGG - chr5_1:17101151-17101170 Msa0720850:intron 40.0%
ACTGATAAGTTAGTCGGAAG+AGG - chr5_1:17101271-17101290 Msa0720850:CDS 40.0%
CTATCTGTTATGCAAGCTGT+TGG - chr5_1:17101741-17101760 Msa0720850:intron 40.0%
! TCTCTCATGAGCTTTTCTGA+AGG - chr5_1:17102235-17102254 Msa0720850:intron 40.0%
TTTGAAGGTGAACCAGACAA+AGG + chr5_1:17102335-17102354 None:intergenic 40.0%
AGTGCCATGATTCTATCATG+AGG + chr5_1:17102386-17102405 None:intergenic 40.0%
ACATCTTTCTCATGGTTACC+AGG - chr5_1:17102424-17102443 Msa0720850:CDS 40.0%
TTTCTCATGGTTACCAGGTA+TGG - chr5_1:17102429-17102448 Msa0720850:CDS 40.0%
AGATGATAGTTGACCATACC+TGG + chr5_1:17102445-17102464 None:intergenic 40.0%
!! TCGATGTATGGATTGGCTTA+TGG - chr5_1:17102494-17102513 Msa0720850:CDS 40.0%
!!! CAATTAGTTTTGGCCTGAAG+AGG + chr5_1:17102908-17102927 None:intergenic 40.0%
AGGCCAAAACTAATTGTTGC+TGG - chr5_1:17102912-17102931 Msa0720850:intron 40.0%
!! GCACCAGCAACAATTAGTTT+TGG + chr5_1:17102918-17102937 None:intergenic 40.0%
GCAAGGTAACACATTCACAA+GGG - chr5_1:17102976-17102995 Msa0720850:CDS 40.0%
AGCTGTGATGTTAGCAGATA+TGG - chr5_1:17103132-17103151 Msa0720850:intron 40.0%
AAAAAGATCATAGCTCCACG+TGG + chr5_1:17103253-17103272 None:intergenic 40.0%
! GTGGAGCTATGATCTTTTTC+AGG - chr5_1:17103254-17103273 Msa0720850:CDS 40.0%
! AATTTTGTTCAGGCCTTCAG+GGG + chr5_1:17103321-17103340 None:intergenic 40.0%
! GAATTTTGTTCAGGCCTTCA+GGG + chr5_1:17103322-17103341 None:intergenic 40.0%
! TGAATTTTGTTCAGGCCTTC+AGG + chr5_1:17103323-17103342 None:intergenic 40.0%
!! GAAGGTGTTCTATGACTATG+AGG - chr5_1:17103476-17103495 Msa0720850:intron 40.0%
CAGCTAAACCAGTAATGGTA+TGG + chr5_1:17103551-17103570 None:intergenic 40.0%
AAGAAAAGGGTTTGTCTGAG+GGG - chr5_1:17103730-17103749 Msa0720850:intron 40.0%
TGAGGGGTTTATTTGAAGAG+TGG - chr5_1:17103746-17103765 Msa0720850:intron 40.0%
TTGTAGCCTGAATCCACAAA+TGG + chr5_1:17103863-17103882 None:intergenic 40.0%
GTATAAAGCATACCAAGAGC+AGG - chr5_1:17103890-17103909 Msa0720850:CDS 40.0%
CAATTGCGCAAAATTTGCAC+AGG - chr5_1:17103920-17103939 Msa0720850:CDS 40.0%
TTAATCTCTGTGGTCCAACA+AGG + chr5_1:17103996-17104015 None:intergenic 40.0%
!! GTTATGAGCTTGTTTCTGGT+GGG - chr5_1:17104068-17104087 Msa0720850:intron 40.0%
TGTATGGTCAAAGAGTTGTC+AGG + chr5_1:17104137-17104156 None:intergenic 40.0%
! ACGCAAATGATTAGCACTGA+AGG + chr5_1:17104199-17104218 None:intergenic 40.0%
TTGTGTCCGATCCACAAAAA+TGG - chr5_1:17104298-17104317 Msa0720850:intron 40.0%
AACTCCTGCTCTTACTTCAA+GGG - chr5_1:17104595-17104614 Msa0720850:intron 40.0%
CACTGCTGATATTAGCTGTA+TGG - chr5_1:17104756-17104775 Msa0720850:intron 40.0%
GCAAAACAATTCCCAACCAT+TGG - chr5_1:17104923-17104942 Msa0720850:CDS 40.0%
TACGTCAGAGAATAATCCAG+TGG + chr5_1:17105244-17105263 None:intergenic 40.0%
!! TTATGTTTGCTATGTGGCAG+TGG - chr5_1:17105264-17105283 Msa0720850:CDS 40.0%
GGAAGTTGCTTATCCAAACA+GGG + chr5_1:17105529-17105548 None:intergenic 40.0%
AGGAAGTTGCTTATCCAAAC+AGG + chr5_1:17105530-17105549 None:intergenic 40.0%
!! TCTCATCTCTGAGACTGAGA+TGG - chr5_1:17100495-17100514 Msa0720850:intron 45.0%
!! ACAGAAGAAGCACTGAAGAG+AGG + chr5_1:17100574-17100593 None:intergenic 45.0%
TGAATTTAGCATGCCTCCCA+TGG - chr5_1:17101296-17101315 Msa0720850:intron 45.0%
TCTCTAAACCATACCATGGG+AGG + chr5_1:17101312-17101331 None:intergenic 45.0%
TATTATTTCGGTGAAGGGGC+TGG - chr5_1:17101689-17101708 Msa0720850:intron 45.0%
ATCCAACCGAAATGCTTCCA+AGG + chr5_1:17102008-17102027 None:intergenic 45.0%
TTCGGTTGGATCCAGCTAAA+TGG - chr5_1:17102017-17102036 Msa0720850:intron 45.0%
TCGGTTGGATCCAGCTAAAT+GGG - chr5_1:17102018-17102037 Msa0720850:intron 45.0%
TTCTTACCTCCCCATTTAGC+TGG + chr5_1:17102031-17102050 None:intergenic 45.0%
! AATCAGCAAAGAGCACGCTA+AGG - chr5_1:17102166-17102185 Msa0720850:CDS 45.0%
TGCACGTTCACTGCAAATCA+GGG + chr5_1:17102311-17102330 None:intergenic 45.0%
GAGAAAGATGTCCTCCATGA+GGG + chr5_1:17102415-17102434 None:intergenic 45.0%
TGAGAAAGATGTCCTCCATG+AGG + chr5_1:17102416-17102435 None:intergenic 45.0%
CATGGAGGACATCTTTCTCA+TGG - chr5_1:17102416-17102435 Msa0720850:CDS 45.0%
AGAAATCTGCTACCCTCTTC+AGG - chr5_1:17102892-17102911 Msa0720850:intron 45.0%
TGATTATGCACGCATTCGCA+AGG - chr5_1:17102959-17102978 Msa0720850:CDS 45.0%
CGCAAGGTAACACATTCACA+AGG - chr5_1:17102975-17102994 Msa0720850:CDS 45.0%
GCAGATATGGCACATATCAG+TGG - chr5_1:17103145-17103164 Msa0720850:intron 45.0%
TATGGCACATATCAGTGGAC+TGG - chr5_1:17103150-17103169 Msa0720850:intron 45.0%
! ACGAAGTGACTTGTGAGTTG+TGG + chr5_1:17103227-17103246 None:intergenic 45.0%
ACAACTCACAAGTCACTTCG+TGG - chr5_1:17103226-17103245 Msa0720850:intron 45.0%
ATCAATCAAGCTGTCTTCCC+TGG - chr5_1:17103504-17103523 Msa0720850:intron 45.0%
CCAGTAATGGTATGGTTGTG+AGG + chr5_1:17103543-17103562 None:intergenic 45.0%
CCTCACAACCATACCATTAC+TGG - chr5_1:17103540-17103559 Msa0720850:intron 45.0%
CGCAACAGCTAAACCAGTAA+TGG + chr5_1:17103556-17103575 None:intergenic 45.0%
TTTAGCTGTTGCGTTGAAGC+AGG - chr5_1:17103563-17103582 Msa0720850:intron 45.0%
ATACCACACACACTCTCAGT+CGG + chr5_1:17103799-17103818 None:intergenic 45.0%
AATTGCTGAGAACCTGCTCT+TGG + chr5_1:17103905-17103924 None:intergenic 45.0%
AGTCAACACAACATAAGGGC+TGG - chr5_1:17103967-17103986 Msa0720850:CDS 45.0%
!! GGTTATGAGCTTGTTTCTGG+TGG - chr5_1:17104067-17104086 Msa0720850:intron 45.0%
TTCCAACACCTTCTCAACTC+TGG + chr5_1:17104410-17104429 None:intergenic 45.0%
GAACTCCTGCTCTTACTTCA+AGG - chr5_1:17104594-17104613 Msa0720850:intron 45.0%
ACTCCTGCTCTTACTTCAAG+GGG - chr5_1:17104596-17104615 Msa0720850:intron 45.0%
AATCCCCTTGAAGTAAGAGC+AGG + chr5_1:17104602-17104621 None:intergenic 45.0%
AAGATCAAGGCAGAGAGCAA+AGG - chr5_1:17104683-17104702 Msa0720850:intron 45.0%
CTCAACATCATGACGAAGCT+TGG + chr5_1:17104897-17104916 None:intergenic 45.0%
CAAGCTTCGTCATGATGTTG+AGG - chr5_1:17104895-17104914 Msa0720850:intron 45.0%
GGCAGTGGTGGTAAAGATTA+TGG - chr5_1:17105279-17105298 Msa0720850:exon 45.0%
GTCAAGCAGTCCATTGTGAT+CGG - chr5_1:17105301-17105320 Msa0720850:five_prime_UTR 45.0%
!! GCAGATGAAAAGCATTAGGC+TGG - chr5_1:17105359-17105378 Msa0720850:five_prime_UTR 45.0%
!!! TTTTGTAAATTTTAAAATTT+TGG - chr5_1:17100072-17100091 Msa0720850:three_prime_UTR 5.0%
!! TGAAATAATAAATAAAAAAT+TGG + chr5_1:17100341-17100360 None:intergenic 5.0%
!! ATTATAATTATTTATTGAAA+TGG - chr5_1:17100375-17100394 Msa0720850:CDS 5.0%
!!! AGTTTTTAAAATTTTTAAAA+TGG - chr5_1:17103667-17103686 Msa0720850:CDS 5.0%
!! CTCTGAGACTGAGATGGCAA+TGG - chr5_1:17100501-17100520 Msa0720850:intron 50.0%
GACTGAGATGGCAATGGCAA+TGG - chr5_1:17100507-17100526 Msa0720850:intron 50.0%
TTAGCATGCCTCCCATGGTA+TGG - chr5_1:17101301-17101320 Msa0720850:intron 50.0%
CCTCCGTAATATCTTGCTCC+AGG + chr5_1:17101801-17101820 None:intergenic 50.0%
CCTGGAGCAAGATATTACGG+AGG - chr5_1:17101798-17101817 Msa0720850:intron 50.0%
! ACTATGCCAAAAGCGTGCCT+TGG - chr5_1:17101988-17102007 Msa0720850:intron 50.0%
! ATGCTTCCAAGGCACGCTTT+TGG + chr5_1:17101997-17102016 None:intergenic 50.0%
!! AGCGTGCCTTGGAAGCATTT+CGG - chr5_1:17101999-17102018 Msa0720850:intron 50.0%
!! TGCCTTGGAAGCATTTCGGT+TGG - chr5_1:17102003-17102022 Msa0720850:intron 50.0%
CGGTTGGATCCAGCTAAATG+GGG - chr5_1:17102019-17102038 Msa0720850:intron 50.0%
TTGGATCCAGCTAAATGGGG+AGG - chr5_1:17102022-17102041 Msa0720850:intron 50.0%
GCACGTTCACTGCAAATCAG+GGG + chr5_1:17102310-17102329 None:intergenic 50.0%
CTGCACGTTCACTGCAAATC+AGG + chr5_1:17102312-17102331 None:intergenic 50.0%
ATGGCACTTGATCTCCCTCA+TGG - chr5_1:17102398-17102417 Msa0720850:CDS 50.0%
! ATACCGACTGAGAGTGTGTG+TGG - chr5_1:17103793-17103812 Msa0720850:intron 50.0%
!! ATAAGGGCTGGTCTCCTTGT+TGG - chr5_1:17103979-17103998 Msa0720850:intron 50.0%
!! TTGCAGGCTCTGAGTGAGAA+AGG - chr5_1:17104046-17104065 Msa0720850:intron 50.0%
TGATGGCTCCAGAGTTGAGA+AGG - chr5_1:17104399-17104418 Msa0720850:intron 50.0%
! CTCCAGAGTTGAGAAGGTGT+TGG - chr5_1:17104405-17104424 Msa0720850:intron 50.0%
TCCTGGAGATGTGTCTGCTA+TGG - chr5_1:17104462-17104481 Msa0720850:intron 50.0%
ACCATAGCAGACACATCTCC+AGG + chr5_1:17104466-17104485 None:intergenic 50.0%
GATGTGTCTGCTATGGTTCC+TGG - chr5_1:17104469-17104488 Msa0720850:intron 50.0%
CTATGGTTCCTGGTGGTATC+AGG - chr5_1:17104479-17104498 Msa0720850:intron 50.0%
GTTCCTGGTGGTATCAGGAT+GGG - chr5_1:17104484-17104503 Msa0720850:intron 50.0%
ATACCCATCCTGATACCACC+AGG + chr5_1:17104490-17104509 None:intergenic 50.0%
TACTTCAAGGGGATTCGTCG+AGG - chr5_1:17104607-17104626 Msa0720850:intron 50.0%
CGTCGAGGAGGATTTCGTTA+AGG - chr5_1:17104622-17104641 Msa0720850:intron 50.0%
AATCTCTGACTGCACGTAGG+AGG + chr5_1:17104873-17104892 None:intergenic 50.0%
GGAAATCTCTGACTGCACGT+AGG + chr5_1:17104876-17104895 None:intergenic 50.0%
!! TGTTTGCTATGTGGCAGTGG+TGG - chr5_1:17105267-17105286 Msa0720850:CDS 50.0%
CAATGGCAATGGCTCTTCGC+AGG - chr5_1:17100518-17100537 Msa0720850:intron 55.0%
GTGAACGTGCAGCCTTTGTC+TGG - chr5_1:17102320-17102339 Msa0720850:intron 55.0%
GCACTTGATCTCCCTCATGG+AGG - chr5_1:17102401-17102420 Msa0720850:CDS 55.0%
!! ATCAGTGGACTGGTTGCAGC+TGG - chr5_1:17103160-17103179 Msa0720850:intron 55.0%
AAGTCACTTCGTGGACCACG+TGG - chr5_1:17103235-17103254 Msa0720850:intron 55.0%
! GAAAAGAGGTGCACCCCTGA+AGG - chr5_1:17103305-17103324 Msa0720850:CDS 55.0%
GTGTCTGCTATGGTTCCTGG+TGG - chr5_1:17104472-17104491 Msa0720850:intron 55.0%
GGTTCCTGGTGGTATCAGGA+TGG - chr5_1:17104483-17104502 Msa0720850:intron 55.0%
TTCAAGGGGATTCGTCGAGG+AGG - chr5_1:17104610-17104629 Msa0720850:intron 55.0%
GCTGTCTTCCCTGGACTGCA+AGG - chr5_1:17103513-17103532 Msa0720850:intron 60.0%
GTCTTCCCTGGACTGCAAGG+TGG - chr5_1:17103516-17103535 Msa0720850:intron 60.0%
GAGGACCACCTTGCAGTCCA+GGG + chr5_1:17103524-17103543 None:intergenic 60.0%
TGAGGACCACCTTGCAGTCC+AGG + chr5_1:17103525-17103544 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 17099961 17105730 17099961 ID=Msa0720850;Name=Msa0720850
chr5_1 mRNA 17099961 17105730 17099961 ID=Msa0720850-mRNA-1;Parent=Msa0720850;Name=Msa0720850-mRNA-1;_AED=0.07;_eAED=0.07;_QI=433|0.93|0.93|1|1|1|16|398|570
chr5_1 exon 17099961 17100407 17099961 ID=Msa0720850-mRNA-1:exon:6536;Parent=Msa0720850-mRNA-1
chr5_1 exon 17100725 17100860 17100725 ID=Msa0720850-mRNA-1:exon:6535;Parent=Msa0720850-mRNA-1
chr5_1 exon 17100987 17101097 17100987 ID=Msa0720850-mRNA-1:exon:6534;Parent=Msa0720850-mRNA-1
chr5_1 exon 17101186 17101297 17101186 ID=Msa0720850-mRNA-1:exon:6533;Parent=Msa0720850-mRNA-1
chr5_1 exon 17101562 17101639 17101562 ID=Msa0720850-mRNA-1:exon:6532;Parent=Msa0720850-mRNA-1
chr5_1 exon 17101750 17101815 17101750 ID=Msa0720850-mRNA-1:exon:6531;Parent=Msa0720850-mRNA-1
chr5_1 exon 17102107 17102211 17102107 ID=Msa0720850-mRNA-1:exon:6530;Parent=Msa0720850-mRNA-1
chr5_1 exon 17102379 17102576 17102379 ID=Msa0720850-mRNA-1:exon:6529;Parent=Msa0720850-mRNA-1
chr5_1 exon 17102711 17102803 17102711 ID=Msa0720850-mRNA-1:exon:6528;Parent=Msa0720850-mRNA-1
chr5_1 exon 17102917 17103009 17102917 ID=Msa0720850-mRNA-1:exon:6527;Parent=Msa0720850-mRNA-1
chr5_1 exon 17103246 17103370 17103246 ID=Msa0720850-mRNA-1:exon:6526;Parent=Msa0720850-mRNA-1
chr5_1 exon 17103648 17103724 17103648 ID=Msa0720850-mRNA-1:exon:6525;Parent=Msa0720850-mRNA-1
chr5_1 exon 17103865 17103986 17103865 ID=Msa0720850-mRNA-1:exon:6524;Parent=Msa0720850-mRNA-1
chr5_1 exon 17104519 17104605 17104519 ID=Msa0720850-mRNA-1:exon:6523;Parent=Msa0720850-mRNA-1
chr5_1 exon 17104907 17104957 17104907 ID=Msa0720850-mRNA-1:exon:6522;Parent=Msa0720850-mRNA-1
chr5_1 exon 17105088 17105730 17105088 ID=Msa0720850-mRNA-1:exon:6521;Parent=Msa0720850-mRNA-1
chr5_1 five_prime_UTR 17105298 17105730 17105298 ID=Msa0720850-mRNA-1:five_prime_utr;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17105088 17105297 17105088 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17104907 17104957 17104907 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17104519 17104605 17104519 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17103865 17103986 17103865 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17103648 17103724 17103648 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17103246 17103370 17103246 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17102917 17103009 17102917 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17102711 17102803 17102711 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17102379 17102576 17102379 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17102107 17102211 17102107 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17101750 17101815 17101750 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17101562 17101639 17101562 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17101186 17101297 17101186 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17100987 17101097 17100987 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17100725 17100860 17100725 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 CDS 17100359 17100407 17100359 ID=Msa0720850-mRNA-1:cds;Parent=Msa0720850-mRNA-1
chr5_1 three_prime_UTR 17099961 17100358 17099961 ID=Msa0720850-mRNA-1:three_prime_utr;Parent=Msa0720850-mRNA-1
Gene Sequence

>Msa0720850

ATGGATCACACCATCCACCAAATCATAGATTTTATTGAACAAAATAAAAAGGAGCAAAAGTATAATTCAAGAATCACACAAGTGTGCTATCCATCCATCTATCTCATCTCTGAGACTGAGATGGCAATGGCAATGGCTCTTCGCAGGCTTTCTTCTTCAATTAACAAATCTTCACGTCCTCTCTTCAGTGCTTCTTCTGTTTACTACAAGTCATCTTTGCCTGATGAAGCTGTGTATGACAAAGAGAATTCACGTGTTTCGTGGCCAAAGCAATTGAATTCTCCACTTGAGGAAATTGATCCTGAAATTGCTGATATTATTGAGCTTGAGAAAGCTAGACAATGGAAGGGGCTGGAACTGATTCCATCAGAAAACTTCACTTCTCTATCTGTTATGCAAGCTGTTGGATCTATCATGACAAACAAATACAGTGAAGGTTATCCTGGAGCAAGATATTACGGAGGAAATGAATATATTGACATGGCAGAAACACTATGCCAAAAGCGTGCCTTGGAAGCATTTCGGTTGGATCCAGCTAAATGGGGAGTGAACGTGCAGCCTTTGTCTGGTTCACCTTCAAATTTTCATGTTTACACTGCATTGTTGAAACCTCATGATAGAATCATGGCACTTGATCTCCCTCATGGAGGACATCTTTCTCATGGTTACCAGACCGACACCAAAAAGATATCTGCAGTCTCTATATTTTTTGAGACAATGCCATATAGATTGGATGAAAGCACAGGATACATTGATTATGACCAGCTAGAGAAATCTGCTACCCTCTTCAGGCCAAAACTAATTGTTGCTGGTGCTAGTGCCTATGCACGTCTGTATGATTATGCACGCATTCGCAAGGTGTGCGATAAACAAAAAGCTGTGATGTTAGCAGATATGGCACATATCAGTGGACTGGTTGCAGCTGGTGTTATCCCTTCACCTTTTGATTATGCAGATGTAGTGACTACCACAACTCACAAGTCACTTCGTGGACCACGTGGAGCTATGATCTTTTTCAGGAAGGGATTAAAAGAAGTCAACAAACAAGGAAAAGAGGTGTTCTATGACTATGAGGACAAAATCAATCAAGCTGTCTTCCCTGGACTGCAAGGTGGTCCTCACAACCATACCATTACTGGTTTAGCTGTTGCGTTGAAGCAGGCTACAACTCCAGAGTATAAAGCATACCAAGAGCAGGTTCTCAGCAATTGCGCAAAATTTGCACAGGCTCTGAGTGAGAAAGGTTATGAGCTTGTTTCTGGTGGGACTGAGAATCATCTAGTTTTGGTGAATCTCAAGAATAAGGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTACATATTGCAGCTAATAAAAACACTGTTCCTGGAGATGTGTCTGCTATGGTTCCTGGTGGTATCAGGATGGGAACTCCTGCTCTTACTTCAAGGGGATTCGTCGAGGAGGATTTCGTTAAGGTAGCAGAGTATTTCGATGCATCTGTGAATTTGGCTTTGAAGATCAAGGCAGAGAGCAAAGGAACAAAATTAAAGGACTTTGTAGAAACATTGCAATCATCCTCCTACGTGCAGTCAGAGATTTCCAAGCTTCGTCATGATGTTGAGGAGTTCGCAAAACAATTCCCAACCATTGGTTTTGAAAAATCAAGCATGAATGGTGGTAAAGATTATGGTCAAGCAGTCCATTGTGATCGGTTTTTCTGA

Protein sequence

>Msa0720850

MDHTIHQIIDFIEQNKKEQKYNSRITQVCYPSIYLISETEMAMAMALRRLSSSINKSSRPLFSASSVYYKSSLPDEAVYDKENSRVSWPKQLNSPLEEIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSIMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFHVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCAKFAQALSEKGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDASVNLALKIKAESKGTKLKDFVETLQSSSYVQSEISKLRHDVEEFAKQFPTIGFEKSSMNGGKDYGQAVHCDRFF*