AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0578930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578930 MtrunA17_Chr4g0044091 96.939 196 6 0 1 196 1 196 4.28e-139 386
Msa0578930 MtrunA17_Chr2g0308611 62.319 138 46 1 53 190 188 319 2.07e-52 171
Msa0578930 MtrunA17_Chr4g0055851 53.892 167 69 3 29 193 83 243 3.16e-49 161
Msa0578930 MtrunA17_Chr1g0175651 62.500 136 44 2 51 186 141 269 3.34e-49 162
Msa0578930 MtrunA17_Chr5g0400781 53.896 154 60 3 52 205 113 255 3.71e-49 161
Msa0578930 MtrunA17_Chr4g0054421 58.647 133 46 2 51 183 116 239 2.66e-48 159
Msa0578930 MtrunA17_Chr5g0399491 52.222 180 70 4 22 195 92 261 6.82e-48 158
Msa0578930 MtrunA17_Chr7g0258831 64.800 125 37 2 59 183 155 272 1.14e-47 158
Msa0578930 MtrunA17_Chr8g0335131 64.706 119 37 1 64 182 145 258 5.63e-47 156
Msa0578930 MtrunA17_Chr1g0151971 48.023 177 84 4 26 200 92 262 1.26e-43 147
Msa0578930 MtrunA17_Chr3g0135331 49.342 152 68 2 58 207 138 282 1.79e-35 126
Msa0578930 MtrunA17_Chr2g0299031 43.396 159 80 4 28 183 44 195 2.42e-34 121
Msa0578930 MtrunA17_Chr4g0071411 49.153 118 54 3 67 182 90 203 2.89e-28 105
Msa0578930 MtrunA17_Chr6g0450991 48.352 91 47 0 62 152 64 154 1.91e-19 84.0
Msa0578930 MtrunA17_Chr5g0415941 34.197 193 92 5 4 166 21 208 1.98e-17 79.0
Msa0578930 MtrunA17_Chr8g0362151 35.849 159 93 3 5 159 22 175 4.41e-17 77.4
Msa0578930 MtrunA17_Chr7g0217111 43.750 96 47 1 64 152 79 174 9.63e-17 76.3
Msa0578930 MtrunA17_Chr6g0453021 37.410 139 75 1 14 152 57 183 1.07e-16 76.3
Msa0578930 MtrunA17_Chr5g0416391 43.564 101 57 0 52 152 64 164 2.75e-16 75.5
Msa0578930 MtrunA17_Chr8g0362751 44.792 96 46 1 63 151 87 182 3.62e-16 75.1
Msa0578930 MtrunA17_Chr7g0265521 42.000 100 57 1 54 152 51 150 4.13e-16 73.9
Msa0578930 MtrunA17_Chr3g0119291 38.028 142 73 4 26 152 12 153 1.03e-15 73.6
Msa0578930 MtrunA17_Chr3g0123691 42.202 109 54 3 53 152 46 154 1.45e-15 73.6
Msa0578930 MtrunA17_Chr4g0060031 45.161 93 44 1 65 150 95 187 2.72e-14 70.5
Msa0578930 MtrunA17_Chr1g0179581 44.318 88 48 1 60 147 24 110 4.21e-14 65.9
Msa0578930 MtrunA17_Chr5g0403691 53.731 67 31 0 65 131 53 119 2.29e-13 66.2
Msa0578930 MtrunA17_Chr5g0403701 53.731 67 31 0 65 131 53 119 2.43e-13 66.2
Msa0578930 MtrunA17_Chr8g0381741 45.455 99 51 2 53 150 43 139 3.47e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578930 AT2G01430.1 65.957 188 49 4 1 184 74 250 6.89e-78 235
Msa0578930 AT1G70920.1 59.474 190 56 5 1 184 1 175 1.12e-57 181
Msa0578930 AT1G70920.2 62.025 158 41 3 33 184 1 145 1.61e-56 177
Msa0578930 AT5G06710.1 49.761 209 86 6 1 205 133 326 3.50e-52 171
Msa0578930 AT4G37790.1 56.489 131 51 1 53 183 114 238 4.45e-47 156
Msa0578930 AT3G60390.1 62.406 133 42 3 52 182 148 274 5.83e-47 157
Msa0578930 AT4G16780.1 61.905 126 43 2 59 184 123 243 1.08e-46 155
Msa0578930 AT2G22800.1 57.895 133 46 2 51 183 103 225 6.32e-46 153
Msa0578930 AT2G44910.1 62.295 122 41 1 64 185 162 278 3.40e-45 152
Msa0578930 AT4G17460.1 58.015 131 50 1 53 183 123 248 1.34e-44 150
Msa0578930 AT5G47370.1 58.647 133 47 2 51 183 119 243 3.24e-44 149
Msa0578930 AT2G01430.2 59.350 123 43 3 1 119 74 193 5.79e-41 139
Msa0578930 AT5G06710.4 48.305 118 50 4 1 116 133 241 7.36e-22 90.5
Msa0578930 AT3G01470.1 47.778 90 47 0 63 152 66 155 8.62e-18 79.7
Msa0578930 AT1G26960.1 40.323 124 68 1 52 175 58 175 1.04e-16 76.6
Msa0578930 AT1G69780.1 43.564 101 57 0 52 152 72 172 2.66e-16 75.9
Msa0578930 AT4G36740.2 42.574 101 58 0 56 156 47 147 1.93e-14 69.7
Msa0578930 AT5G65310.1 46.512 86 46 0 65 150 72 157 1.96e-14 70.9
Msa0578930 AT5G65310.2 46.512 86 46 0 65 150 54 139 2.05e-14 70.9
Msa0578930 AT4G36740.1 42.574 101 58 0 56 156 46 146 2.29e-14 69.3
Msa0578930 AT2G36610.1 40.367 109 56 2 53 153 60 167 3.76e-14 68.2
Msa0578930 AT2G18550.1 42.857 98 56 0 54 151 50 147 5.01e-14 68.6
Msa0578930 AT1G27045.5 52.778 72 34 0 65 136 25 96 9.72e-14 67.0
Msa0578930 AT1G27045.3 52.778 72 34 0 65 136 25 96 9.72e-14 67.0
Msa0578930 AT5G03790.1 42.391 92 53 0 65 156 77 168 1.00e-13 68.2
Msa0578930 AT1G27045.1 45.745 94 44 1 65 151 68 161 1.24e-13 67.8
Msa0578930 AT1G27045.2 52.778 72 34 0 65 136 17 88 1.24e-13 66.6
Msa0578930 AT5G15150.1 45.455 88 48 0 65 152 115 202 1.78e-13 68.2
Msa0578930 AT4G40060.1 45.349 86 47 0 65 150 59 144 3.33e-13 67.4
Msa0578930 AT1G27045.4 52.778 72 34 0 65 136 68 139 3.54e-13 66.6
Msa0578930 AT2G22430.1 46.512 86 46 0 65 150 62 147 5.18e-13 67.0
Msa0578930 AT3G01220.1 34.375 160 84 5 5 143 6 165 6.63e-13 66.2
Msa0578930 AT5G66700.1 47.561 82 41 1 49 130 57 136 1.08e-12 65.1
Msa0578930 AT5G03790.2 35.246 122 77 1 59 178 71 192 2.59e-11 60.8

Find 71 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGAAAGCAGCGTTAA+TGG 0.245343 4_1:+83588726 Msa0578930:CDS
TTCTTGATCTTCTTCTTCTA+TGG 0.256573 4_1:+83587648 Msa0578930:exon
AAAGAGAAGTTGAGGAGCTT+AGG 0.327770 4_1:+83592431 Msa0578930:CDS
CAAGAAGATCCTTGATGAAA+AGG 0.362713 4_1:-83587631 None:intergenic
AGCGACTGTGGCGGTGGTAT+TGG 0.370541 4_1:-83592554 None:intergenic
AAAGTGAAGAAAACAAATTT+AGG 0.381582 4_1:-83587597 None:intergenic
GATGAGGGGAGAAAAGAAAT+TGG 0.383567 4_1:-83587736 None:intergenic
AAGACCCAAACCACCTCTTC+AGG 0.404339 4_1:-83592384 None:intergenic
GGTGGTGACACGCTCACATC+GGG 0.415895 4_1:-83592533 None:intergenic
TGCCATCCATTCTTCTTCTA+CGG 0.429731 4_1:-83588694 None:intergenic
TGAAGCTTTCTTCAAGGAGA+TGG 0.431949 4_1:-83588791 None:intergenic
AAGAGAAGTTGAGGAGCTTA+GGG 0.432553 4_1:+83592432 Msa0578930:CDS
CAACTTCTCTTTGTAGCCTC+CGG 0.434325 4_1:-83592420 None:intergenic
ACAGAAGCAGAAAGAGTGTT+TGG 0.439755 4_1:+83589001 Msa0578930:intron
ATTGGTGAAGAAGCAAAGCC+TGG 0.448686 4_1:-83587718 None:intergenic
GAATACCTGAAGAGGTGGTT+TGG 0.451281 4_1:+83592379 Msa0578930:CDS
GGTCTTTAACTGAACAAAAC+CGG 0.455555 4_1:+83592401 Msa0578930:CDS
AGAAAACAAATTTAGGAGAA+AGG 0.458069 4_1:-83587590 None:intergenic
CTTGATGAAAAGGGAGGAAA+AGG 0.462170 4_1:-83587621 None:intergenic
ACCTACAAGTTCCTCCAGCT+TGG 0.470781 4_1:+83587678 Msa0578930:CDS
AAGAAGATCCTTGATGAAAA+GGG 0.473088 4_1:-83587630 None:intergenic
AACCACACCTCCACTTGCCT+TGG 0.476841 4_1:-83589044 None:intergenic
GAAGCTTTCTTCAAGGAGAT+GGG 0.480176 4_1:-83588790 None:intergenic
AATACCTGAAGAGGTGGTTT+GGG 0.488971 4_1:+83592380 Msa0578930:CDS
TTCGGCAGCGACTGTGGCGG+TGG 0.489852 4_1:-83592560 None:intergenic
CACATTGATAAGGTTGAAGC+TGG 0.491305 4_1:-83592508 None:intergenic
TGTCATGCTTGTCACACTCT+AGG 0.496223 4_1:-83592613 None:intergenic
GTCATGCTTGTCACACTCTA+GGG 0.499070 4_1:-83592612 None:intergenic
ATTCTTCTTCTACGGTTACT+CGG 0.502354 4_1:-83588686 None:intergenic
TAATTACTGGGTTTAAAGTG+TGG 0.513978 4_1:-83588821 None:intergenic
GACTGTGGCGGTGGTATTGG+TGG 0.515726 4_1:-83592551 None:intergenic
TCCAAGCTGGAGGAACTTGT+AGG 0.518571 4_1:-83587679 None:intergenic
GAGTAACCGTAGAAGAAGAA+TGG 0.519061 4_1:+83588688 Msa0578930:CDS
GGTTTCAAAACCGTAGGGCC+AGG 0.531848 4_1:+83589063 Msa0578930:CDS
AGCAAAGCCTGGGATAGATA+TGG 0.534631 4_1:-83587707 None:intergenic
CAAGTTGAAGCAGACAGAGA+TGG 0.539564 4_1:+83592351 Msa0578930:CDS
GGAGCTTAGGGCTATGAAGA+TGG 0.542259 4_1:+83592444 Msa0578930:CDS
GATAAGGTTGAAGCTGGAAG+AGG 0.548416 4_1:-83592502 None:intergenic
GAATTGACCATATCTATCCC+AGG 0.565626 4_1:+83587700 Msa0578930:CDS
CACTCGTGCACGATCGAGCG+TGG 0.575990 4_1:-83592659 None:intergenic
AGAATGGATGGCACTAGAAG+AGG 0.577292 4_1:+83588704 Msa0578930:CDS
TTAGCCTTTACCTGGCCCTA+CGG 0.577524 4_1:-83589073 None:intergenic
AGATATGGTCAATTCCAAGC+TGG 0.579606 4_1:-83587692 None:intergenic
ACACCTCCACTTGCCTTGGT+CGG 0.580254 4_1:-83589040 None:intergenic
GTGCTACTTACCAGATGATG+AGG 0.582615 4_1:-83587752 None:intergenic
ACATCGGGGACACATTGATA+AGG 0.583310 4_1:-83592518 None:intergenic
TGCAGCTTAAGCTCCGACCA+AGG 0.586714 4_1:+83589027 Msa0578930:CDS
GACCAAGGCAAGTGGAGGTG+TGG 0.601638 4_1:+83589042 Msa0578930:CDS
AACCGTAGAAGAAGAATGGA+TGG 0.604290 4_1:+83588692 Msa0578930:CDS
TGGTGGTGACACGCTCACAT+CGG 0.609053 4_1:-83592534 None:intergenic
TGCTACTTACCAGATGATGA+GGG 0.609343 4_1:-83587751 None:intergenic
TAAGCTCCGACCAAGGCAAG+TGG 0.615426 4_1:+83589034 Msa0578930:CDS
AGGTGTGGTTTCAAAACCGT+AGG 0.616349 4_1:+83589057 Msa0578930:CDS
TTGGTGAAGAAGCAAAGCCT+GGG 0.624929 4_1:-83587717 None:intergenic
CACTCTAGGGGACAAAATGA+CGG 0.630061 4_1:-83592599 None:intergenic
CAAGAAACTGCGTCTAACAA+AGG 0.630784 4_1:+83588761 Msa0578930:CDS
GAGGCTACAAAGAGAAGTTG+AGG 0.631401 4_1:+83592423 Msa0578930:CDS
TGGAGTGCGAATACCTGAAG+AGG 0.632527 4_1:+83592371 Msa0578930:CDS
TGAGGAGATAACACAGTAGG+TGG 0.632854 4_1:-83592469 None:intergenic
AAGATCCTTGATGAAAAGGG+AGG 0.635554 4_1:-83587627 None:intergenic
TATGGTCAATTCCAAGCTGG+AGG 0.639066 4_1:-83587689 None:intergenic
CTGTGAGGAGATAACACAGT+AGG 0.640869 4_1:-83592472 None:intergenic
GTTAGACGCAGTTTCTTGCG+AGG 0.647544 4_1:-83588756 None:intergenic
GGTGTGGTTTCAAAACCGTA+GGG 0.647806 4_1:+83589058 Msa0578930:CDS
GCTCCGACCAAGGCAAGTGG+AGG 0.651935 4_1:+83589037 Msa0578930:CDS
TCATGCTTGTCACACTCTAG+GGG 0.663913 4_1:-83592611 None:intergenic
AGTGCGAATACCTGAAGAGG+TGG 0.667742 4_1:+83592374 Msa0578930:CDS
GGAAGAGGCTCAGAACTGTG+AGG 0.688248 4_1:-83592487 None:intergenic
GCTACTTACCAGATGATGAG+GGG 0.700104 4_1:-83587750 None:intergenic
CTTTAACTGAACAAAACCGG+AGG 0.724376 4_1:+83592404 Msa0578930:CDS
GTGGTGACACGCTCACATCG+GGG 0.751626 4_1:-83592532 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAATAATAAATTTAA+GGG - chr4_1:83588022-83588041 None:intergenic 0.0%
!! TTATAAAAATAATAAATTTA+AGG - chr4_1:83588023-83588042 None:intergenic 0.0%
!! AATAAAATTAAAACAATGAT+CGG + chr4_1:83587958-83587977 Msa0578930:intron 10.0%
!! AACAAAAAGTTAATATTAAA+CGG + chr4_1:83588041-83588060 Msa0578930:intron 10.0%
!! AAAGTAAAAAATTGTATATT+AGG - chr4_1:83588168-83588187 None:intergenic 10.0%
!! TAAAAAAATGATATATTTGT+CGG + chr4_1:83588485-83588504 Msa0578930:intron 10.0%
!! TATATTATATATCTAACTTT+AGG - chr4_1:83588589-83588608 None:intergenic 10.0%
!! AAAAATTCATAATTCTTTAT+AGG - chr4_1:83588625-83588644 None:intergenic 10.0%
!! AAGAAAATATGAATAAATTA+AGG - chr4_1:83588888-83588907 None:intergenic 10.0%
!! AATTATATGCATATTAATTA+AGG - chr4_1:83588970-83588989 None:intergenic 10.0%
!! TTAATTAATATGCATATAAT+TGG + chr4_1:83588969-83588988 Msa0578930:intron 10.0%
!! ATTAATAATGATAACATTTA+AGG + chr4_1:83590383-83590402 Msa0578930:intron 10.0%
!!! TTAAAGAAAGAATAATATTT+TGG - chr4_1:83591973-83591992 None:intergenic 10.0%
!!! TTCATTTATTTTACCATTAT+TGG + chr4_1:83587898-83587917 Msa0578930:intron 15.0%
!! TTAAAAAATGAAACCAATAA+TGG - chr4_1:83587914-83587933 None:intergenic 15.0%
!!! TTGATCTTTATTGTTTTTTT+AGG + chr4_1:83588234-83588253 Msa0578930:intron 15.0%
!! AAAAAAATGATATATTTGTC+GGG + chr4_1:83588486-83588505 Msa0578930:intron 15.0%
!!! AAAGAATTATGAATTTTTGT+TGG + chr4_1:83588627-83588646 Msa0578930:intron 15.0%
!!! AAGAATTATGAATTTTTGTT+GGG + chr4_1:83588628-83588647 Msa0578930:intron 15.0%
!!! TTTCATATATAGTCTTAATT+AGG - chr4_1:83589210-83589229 None:intergenic 15.0%
!! TTGTTTAGTAATAAAATGTT+AGG + chr4_1:83589359-83589378 Msa0578930:intron 15.0%
!!! TCATCTCTTAATTTAATTTT+AGG - chr4_1:83589657-83589676 None:intergenic 15.0%
!! GAATAATAACAAAGATAATA+TGG - chr4_1:83589741-83589760 None:intergenic 15.0%
!!! ATAATAATGTTTTTATGAAC+CGG + chr4_1:83590287-83590306 Msa0578930:intron 15.0%
!!! AATAAATAAGAGTATAATAG+TGG - chr4_1:83590540-83590559 None:intergenic 15.0%
!!! TCATTTTGAAACAAATTTTT+TGG - chr4_1:83591138-83591157 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr4_1:83591240-83591259 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr4_1:83591264-83591283 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr4_1:83591263-83591282 Msa0578930:intron 15.0%
!!! TACAAATAGAAATTTTATCT+TGG - chr4_1:83591437-83591456 None:intergenic 15.0%
!! TATTTAACCTATTAATGTAA+GGG - chr4_1:83591502-83591521 None:intergenic 15.0%
!! ATATTTAACCTATTAATGTA+AGG - chr4_1:83591503-83591522 None:intergenic 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr4_1:83591137-83591156 None:intergenic 15.0%
!! AAATTATCATAATCAACTAT+TGG - chr4_1:83592007-83592026 None:intergenic 15.0%
!! AATAGTTGATTATGATAATT+TGG + chr4_1:83592006-83592025 Msa0578930:intron 15.0%
!! AAAGTGAAGAAAACAAATTT+AGG - chr4_1:83587600-83587619 None:intergenic 20.0%
!! GAAGAAAAAAATAAGTATGT+GGG - chr4_1:83588080-83588099 None:intergenic 20.0%
!! AGAAGAAAAAAATAAGTATG+TGG - chr4_1:83588081-83588100 None:intergenic 20.0%
!!! TTATTTTTTTCTTCTTCTTG+AGG + chr4_1:83588086-83588105 Msa0578930:intron 20.0%
!!! ATTTTACCTATATTTGCTTT+AGG - chr4_1:83588137-83588156 None:intergenic 20.0%
!! TACAATGACTGAAAAAAATA+AGG - chr4_1:83588195-83588214 None:intergenic 20.0%
!! TAAATTAAGGTCATGTAAAT+GGG - chr4_1:83588875-83588894 None:intergenic 20.0%
!! ATAAATTAAGGTCATGTAAA+TGG - chr4_1:83588876-83588895 None:intergenic 20.0%
!!! TCTTTTCAATTCTTTTTCAT+CGG - chr4_1:83589392-83589411 None:intergenic 20.0%
!!! TAATAATGTTTTTATGAACC+GGG + chr4_1:83590288-83590307 Msa0578930:intron 20.0%
!! TAAAATTATGAATATGAACC+CGG - chr4_1:83590309-83590328 None:intergenic 20.0%
!!! TTGTTTTAACTTCTTTAACT+TGG - chr4_1:83590333-83590352 None:intergenic 20.0%
!! TCCACTAACTATAATTAATA+AGG + chr4_1:83590582-83590601 Msa0578930:intron 20.0%
!! CCACTAACTATAATTAATAA+GGG + chr4_1:83590583-83590602 Msa0578930:intron 20.0%
!! CTTATAATAAAAGCAATGAT+AGG - chr4_1:83591012-83591031 None:intergenic 20.0%
!!! TTGCTTTTATTATAAGACAA+AGG + chr4_1:83591016-83591035 Msa0578930:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr4_1:83591177-83591196 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr4_1:83591254-83591273 Msa0578930:intron 20.0%
!!! ATTTTTTAACCATTAACTTG+AGG + chr4_1:83591460-83591479 Msa0578930:intron 20.0%
!! TTAATAAAACTCCATAAACA+CGG - chr4_1:83591645-83591664 None:intergenic 20.0%
!! GTAACATAGTATTAATTGAA+GGG - chr4_1:83591943-83591962 None:intergenic 20.0%
!! TGTAACATAGTATTAATTGA+AGG - chr4_1:83591944-83591963 None:intergenic 20.0%
!!! TAAGCAAATTTTGACTTTTT+AGG - chr4_1:83592148-83592167 None:intergenic 20.0%
!!! CATTGATTAAAATGATGATA+TGG - chr4_1:83592295-83592314 None:intergenic 20.0%
!!! TGTACGTTGAATTAATATTT+TGG + chr4_1:83592315-83592334 Msa0578930:intron 20.0%
! AGAAAACAAATTTAGGAGAA+AGG - chr4_1:83587593-83587612 None:intergenic 25.0%
! ATAAAAAAACACAACTGTAG+TGG - chr4_1:83587999-83588018 None:intergenic 25.0%
! TAATATTAAACGGCCTATAA+AGG + chr4_1:83588051-83588070 Msa0578930:intron 25.0%
! AATATTAAACGGCCTATAAA+GGG + chr4_1:83588052-83588071 Msa0578930:intron 25.0%
! TAACTTCCTAAAGCAAATAT+AGG + chr4_1:83588128-83588147 Msa0578930:intron 25.0%
! AAAAAACTTTAGGTACTAGT+TGG - chr4_1:83588549-83588568 None:intergenic 25.0%
!!! ACCTAAAGTTTTTTTTTGAG+AGG + chr4_1:83588555-83588574 Msa0578930:intron 25.0%
! TCCTCTCAAAAAAAAACTTT+AGG - chr4_1:83588559-83588578 None:intergenic 25.0%
!! ATGAATTTTTGTTGGGAAAT+TGG + chr4_1:83588635-83588654 Msa0578930:intron 25.0%
!! TGAATTTTTGTTGGGAAATT+GGG + chr4_1:83588636-83588655 Msa0578930:intron 25.0%
!!! ATTTTGGAGGTATAATTACT+GGG - chr4_1:83588836-83588855 None:intergenic 25.0%
!! TCTTGGTAAAAGAAAGATTT+TGG - chr4_1:83588852-83588871 None:intergenic 25.0%
! ACAATTAGCTCACTTAATTA+AGG + chr4_1:83589235-83589254 Msa0578930:intron 25.0%
!! AGTAAGTTGTATGATTTTGA+TGG + chr4_1:83589432-83589451 Msa0578930:intron 25.0%
! GTTGACATTCTATAACATAA+AGG + chr4_1:83589594-83589613 Msa0578930:intron 25.0%
!!! ATCTTTGTTATTATTCTCCT+AGG + chr4_1:83589745-83589764 Msa0578930:intron 25.0%
!!! TCTTTGTTATTATTCTCCTA+GGG + chr4_1:83589746-83589765 Msa0578930:intron 25.0%
!! AGGTTTATGTTAAGTTTTCA+TGG + chr4_1:83589894-83589913 Msa0578930:intron 25.0%
!!! AACTTGATTTTGCGTTTTTT+TGG - chr4_1:83589924-83589943 None:intergenic 25.0%
! GTTCTTGAAAATTGTTTGAT+TGG + chr4_1:83590127-83590146 Msa0578930:intron 25.0%
! CATTCGTTCTTGAAAATATT+TGG - chr4_1:83590182-83590201 None:intergenic 25.0%
!!! ATGAGTCAATTTTTGAAGTT+AGG + chr4_1:83590199-83590218 Msa0578930:intron 25.0%
! ATTAATTATAGTTAGTGGAG+TGG - chr4_1:83590581-83590600 None:intergenic 25.0%
! CCCTTATTAATTATAGTTAG+TGG - chr4_1:83590586-83590605 None:intergenic 25.0%
! ACTTTAAACGACTATTATTG+TGG + chr4_1:83590678-83590697 Msa0578930:intron 25.0%
! ACTTTAAACGACTATTATTG+TGG + chr4_1:83590678-83590697 Msa0578930:intron 25.0%
!!! TTTTTATGTGTGAAAGTACA+AGG + chr4_1:83590961-83590980 Msa0578930:intron 25.0%
! AAGACAAAGGAATTACATTA+AGG + chr4_1:83591029-83591048 Msa0578930:intron 25.0%
! AATGATTAAGAGAAAGAGAA+TGG - chr4_1:83591297-83591316 None:intergenic 25.0%
! AAGGTGCACTTAATAATTAT+TGG - chr4_1:83591700-83591719 None:intergenic 25.0%
! CATGATGATTATAAATGCAT+GGG - chr4_1:83591752-83591771 None:intergenic 25.0%
! TCATGATGATTATAAATGCA+TGG - chr4_1:83591753-83591772 None:intergenic 25.0%
!!! GTGTAAGTAATCACTTTTTA+TGG - chr4_1:83591803-83591822 None:intergenic 25.0%
!!! AAACGACACTTATTTTGAAA+CGG - chr4_1:83591843-83591862 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - chr4_1:83592158-83592177 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr4_1:83592084-83592103 Msa0578930:intron 25.0%
! CATTCAATAAATGATGTATG+TGG - chr4_1:83592084-83592103 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG + chr4_1:83592158-83592177 Msa0578930:intron 25.0%
AAGAAGATCCTTGATGAAAA+GGG - chr4_1:83587633-83587652 None:intergenic 30.0%
TTCTTGATCTTCTTCTTCTA+TGG + chr4_1:83587648-83587667 Msa0578930:exon 30.0%
ATACTAGACAAAGATGCAAA+AGG - chr4_1:83587792-83587811 None:intergenic 30.0%
CGTGCAAAATTAATTCATGT+AGG - chr4_1:83588383-83588402 None:intergenic 30.0%
!!! TTTTTCTGAAGCTTTCTTCA+AGG - chr4_1:83588800-83588819 None:intergenic 30.0%
! TAATTACTGGGTTTAAAGTG+TGG - chr4_1:83588824-83588843 None:intergenic 30.0%
!! GATTTTGGAGGTATAATTAC+TGG - chr4_1:83588837-83588856 None:intergenic 30.0%
! TGGTAAAAGAAAGATTTTGG+AGG - chr4_1:83588849-83588868 None:intergenic 30.0%
TAGAAATATAGCATCTCTCA+TGG - chr4_1:83588939-83588958 None:intergenic 30.0%
AGTTGGAAGCTAATATATAG+AGG - chr4_1:83589100-83589119 None:intergenic 30.0%
GCTAAGTTTCAAAATCATCA+TGG + chr4_1:83590028-83590047 Msa0578930:intron 30.0%
! ATCATGGATTTGTTTGTTGA+AGG + chr4_1:83590044-83590063 Msa0578930:intron 30.0%
!!! TCAATTTTTGAAGTTAGGCA+AGG + chr4_1:83590204-83590223 Msa0578930:intron 30.0%
!!! CAATTTTTGAAGTTAGGCAA+GGG + chr4_1:83590205-83590224 Msa0578930:intron 30.0%
ATAACATTTAAGGAGTTGCA+TGG + chr4_1:83590393-83590412 Msa0578930:intron 30.0%
! AAGTGATTTTGAGCTAAAGA+AGG + chr4_1:83590419-83590438 Msa0578930:intron 30.0%
GACGATTATTATGAGATAGA+GGG - chr4_1:83590468-83590487 None:intergenic 30.0%
AGACGATTATTATGAGATAG+AGG - chr4_1:83590469-83590488 None:intergenic 30.0%
TAAATATTGCATTGCTAGAC+AGG - chr4_1:83590506-83590525 None:intergenic 30.0%
ACAAGGATGGTACAAAAAAA+AGG - chr4_1:83590723-83590742 None:intergenic 30.0%
AGGAATTACATTAAGGAGAA+TGG + chr4_1:83591036-83591055 Msa0578930:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr4_1:83591345-83591364 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr4_1:83591346-83591365 Msa0578930:intron 30.0%
ATTCTCATTAAACATACCGT+AGG + chr4_1:83591546-83591565 Msa0578930:intron 30.0%
! TTGAGTTGTCTACTTTCATT+TGG - chr4_1:83591605-83591624 None:intergenic 30.0%
GCACTTAATAATTATTGGAG+AGG - chr4_1:83591695-83591714 None:intergenic 30.0%
ATGATTATAAATGCATGGGT+TGG - chr4_1:83591748-83591767 None:intergenic 30.0%
!! TTCAAAATGAGTGTTGCTTT+AGG - chr4_1:83592237-83592256 None:intergenic 30.0%
!! AAGCAACACTCATTTTGAAA+CGG + chr4_1:83592238-83592257 Msa0578930:intron 30.0%
!! TTAATATTTTGGACACATGC+AGG + chr4_1:83592326-83592345 Msa0578930:intron 30.0%
! GGCATCAATGACTAATTTTT+CGG - chr4_1:83592581-83592600 None:intergenic 30.0%
CAAGAAGATCCTTGATGAAA+AGG - chr4_1:83587634-83587653 None:intergenic 35.0%
AAGACACAAACATGAAGAGA+GGG - chr4_1:83587851-83587870 None:intergenic 35.0%
AAAGACACAAACATGAAGAG+AGG - chr4_1:83587852-83587871 None:intergenic 35.0%
ATTCTTCTTCTACGGTTACT+CGG - chr4_1:83588689-83588708 None:intergenic 35.0%
ACACATATTGAAGTCGATTG+AGG - chr4_1:83589139-83589158 None:intergenic 35.0%
ACAAAGATAATATGGCGAAG+AGG - chr4_1:83589733-83589752 None:intergenic 35.0%
TATTATTCTCCTAGGGTTTG+CGG + chr4_1:83589753-83589772 Msa0578930:intron 35.0%
!! TTGCGGAGTGTTATCTATTT+TGG + chr4_1:83589770-83589789 Msa0578930:intron 35.0%
!! TGCGGAGTGTTATCTATTTT+GGG + chr4_1:83589771-83589790 Msa0578930:intron 35.0%
ACATAAACCTTGCCATATGT+AGG - chr4_1:83589884-83589903 None:intergenic 35.0%
TTTCAAGAACATGAACAGCT+AGG - chr4_1:83590117-83590136 None:intergenic 35.0%
ATGGGAATGTTCTCTTAGAT+AGG + chr4_1:83590238-83590257 Msa0578930:intron 35.0%
TGCAAGGATGGTACAATAAA+AGG - chr4_1:83590861-83590880 None:intergenic 35.0%
ATCCTTAATCATTGCCATTG+GGG - chr4_1:83591071-83591090 None:intergenic 35.0%
GATCCTTAATCATTGCCATT+GGG - chr4_1:83591072-83591091 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+GGG - chr4_1:83591108-83591127 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr4_1:83591211-83591230 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr4_1:83591215-83591234 None:intergenic 35.0%
AAACAGTGTCCTCAAGTTAA+TGG - chr4_1:83591472-83591491 None:intergenic 35.0%
AGCAAGACCCTTACATTAAT+AGG + chr4_1:83591492-83591511 Msa0578930:intron 35.0%
GAAACGGAGTGAGTATTATT+GGG - chr4_1:83591827-83591846 None:intergenic 35.0%
TGAAACGGAGTGAGTATTAT+TGG - chr4_1:83591828-83591847 None:intergenic 35.0%
AGGCAATTGCACATAGATTA+AGG - chr4_1:83592217-83592236 None:intergenic 35.0%
GGTCTTTAACTGAACAAAAC+CGG + chr4_1:83592401-83592420 Msa0578930:CDS 35.0%
CTTGATGAAAAGGGAGGAAA+AGG - chr4_1:83587624-83587643 None:intergenic 40.0%
! CTTTTCCTCCCTTTTCATCA+AGG + chr4_1:83587622-83587641 Msa0578930:five_prime_UTR 40.0%
AAGATCCTTGATGAAAAGGG+AGG - chr4_1:83587630-83587649 None:intergenic 40.0%
AGATATGGTCAATTCCAAGC+TGG - chr4_1:83587695-83587714 None:intergenic 40.0%
GAATTGACCATATCTATCCC+AGG + chr4_1:83587700-83587719 Msa0578930:CDS 40.0%
GATGAGGGGAGAAAAGAAAT+TGG - chr4_1:83587739-83587758 None:intergenic 40.0%
! TGCTACTTACCAGATGATGA+GGG - chr4_1:83587754-83587773 None:intergenic 40.0%
AGTATGTGGGAACCCTTTAT+AGG - chr4_1:83588067-83588086 None:intergenic 40.0%
! GGGTGTTACAGTGAAAAAGT+TGG + chr4_1:83588656-83588675 Msa0578930:intron 40.0%
GAGTAACCGTAGAAGAAGAA+TGG + chr4_1:83588688-83588707 Msa0578930:CDS 40.0%
AACCGTAGAAGAAGAATGGA+TGG + chr4_1:83588692-83588711 Msa0578930:CDS 40.0%
TGCCATCCATTCTTCTTCTA+CGG - chr4_1:83588697-83588716 None:intergenic 40.0%
GAAGAAGAAAGCAGCGTTAA+TGG + chr4_1:83588726-83588745 Msa0578930:CDS 40.0%
CAAGAAACTGCGTCTAACAA+AGG + chr4_1:83588761-83588780 Msa0578930:CDS 40.0%
GAAGCTTTCTTCAAGGAGAT+GGG - chr4_1:83588793-83588812 None:intergenic 40.0%
TGAAGCTTTCTTCAAGGAGA+TGG - chr4_1:83588794-83588813 None:intergenic 40.0%
AAGGTCATGTAAATGGGTCT+TGG - chr4_1:83588869-83588888 None:intergenic 40.0%
TATAGCATCTCTCATGGACA+TGG - chr4_1:83588933-83588952 None:intergenic 40.0%
!! ACAGAAGCAGAAAGAGTGTT+TGG + chr4_1:83589001-83589020 Msa0578930:intron 40.0%
!! ATAGAGGATTAGCCTTTACC+TGG - chr4_1:83589084-83589103 None:intergenic 40.0%
GATCAGTCATGATGAGAAGT+TGG - chr4_1:83589117-83589136 None:intergenic 40.0%
! ATGGCTATGTTTTCCTGGTT+TGG + chr4_1:83589846-83589865 Msa0578930:intron 40.0%
! TCAAGTTGCAAACCCTAATC+TGG + chr4_1:83589937-83589956 Msa0578930:intron 40.0%
TGAAGGTTTGACCATTGATG+AGG + chr4_1:83590061-83590080 Msa0578930:intron 40.0%
GTTATCTGATTCCAAGTCGA+TGG - chr4_1:83590095-83590114 None:intergenic 40.0%
GAGAGAGTCAGAAACAAAGT+TGG + chr4_1:83590769-83590788 Msa0578930:intron 40.0%
TACAAGGAATGTATGCCACA+TGG + chr4_1:83590977-83590996 Msa0578930:intron 40.0%
ACAAGGAATGTATGCCACAT+GGG + chr4_1:83590978-83590997 Msa0578930:intron 40.0%
CATTAAGGAGAATGGTAACC+AGG + chr4_1:83591044-83591063 Msa0578930:intron 40.0%
GGATCCTTAATCATTGCCAT+TGG - chr4_1:83591073-83591092 None:intergenic 40.0%
!!! AACAGAGGGAGTACTTGTTT+TGG - chr4_1:83591094-83591113 None:intergenic 40.0%
!!! CGACACTCATTTTGAAACAG+AGG - chr4_1:83591109-83591128 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr4_1:83591212-83591231 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr4_1:83591350-83591369 Msa0578930:intron 40.0%
TTTATCCCACAGCAATCCTA+CGG - chr4_1:83591565-83591584 None:intergenic 40.0%
AAACTCCATAAACACGGACA+CGG - chr4_1:83591639-83591658 None:intergenic 40.0%
! GTCTAAAGCATGAAATCGAG+TGG - chr4_1:83591726-83591745 None:intergenic 40.0%
GGTAAAATTACTACTCCCTC+CGG + chr4_1:83592027-83592046 Msa0578930:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr4_1:83592162-83592181 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr4_1:83592161-83592180 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr4_1:83592161-83592180 Msa0578930:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr4_1:83592162-83592181 Msa0578930:intron 40.0%
AATACCTGAAGAGGTGGTTT+GGG + chr4_1:83592380-83592399 Msa0578930:CDS 40.0%
CTTTAACTGAACAAAACCGG+AGG + chr4_1:83592404-83592423 Msa0578930:CDS 40.0%
AAAGAGAAGTTGAGGAGCTT+AGG + chr4_1:83592431-83592450 Msa0578930:CDS 40.0%
AAGAGAAGTTGAGGAGCTTA+GGG + chr4_1:83592432-83592451 Msa0578930:CDS 40.0%
CACATTGATAAGGTTGAAGC+TGG - chr4_1:83592511-83592530 None:intergenic 40.0%
TATGGTCAATTCCAAGCTGG+AGG - chr4_1:83587692-83587711 None:intergenic 45.0%
AGCAAAGCCTGGGATAGATA+TGG - chr4_1:83587710-83587729 None:intergenic 45.0%
TTGGTGAAGAAGCAAAGCCT+GGG - chr4_1:83587720-83587739 None:intergenic 45.0%
ATTGGTGAAGAAGCAAAGCC+TGG - chr4_1:83587721-83587740 None:intergenic 45.0%
! TCTTTTCTCCCCTCATCATC+TGG + chr4_1:83587742-83587761 Msa0578930:CDS 45.0%
GCTACTTACCAGATGATGAG+GGG - chr4_1:83587753-83587772 None:intergenic 45.0%
!! GTGCTACTTACCAGATGATG+AGG - chr4_1:83587755-83587774 None:intergenic 45.0%
AGAATGGATGGCACTAGAAG+AGG + chr4_1:83588704-83588723 Msa0578930:CDS 45.0%
AGGTGTGGTTTCAAAACCGT+AGG + chr4_1:83589057-83589076 Msa0578930:CDS 45.0%
GGTGTGGTTTCAAAACCGTA+GGG + chr4_1:83589058-83589077 Msa0578930:CDS 45.0%
TTTGGGTCGTCGTGTTCAAT+TGG + chr4_1:83589788-83589807 Msa0578930:intron 45.0%
TTGGGTCGTCGTGTTCAATT+GGG + chr4_1:83589789-83589808 Msa0578930:intron 45.0%
AAGACACACGCTACTCACAA+GGG - chr4_1:83589824-83589843 None:intergenic 45.0%
! CTTGCATGGCTATGTTTTCC+TGG + chr4_1:83589841-83589860 Msa0578930:intron 45.0%
CGTATGCATCAGCCTACATA+TGG + chr4_1:83589869-83589888 Msa0578930:intron 45.0%
!! GTGGTGCTTTGGGAATGATT+CGG - chr4_1:83589972-83589991 None:intergenic 45.0%
TTTGCAAAGCGTGGTGCTTT+GGG - chr4_1:83589982-83590001 None:intergenic 45.0%
TCAGAAAGCTTTGCAAAGCG+TGG - chr4_1:83589991-83590010 None:intergenic 45.0%
AGGTTTGACCATTGATGAGG+AGG + chr4_1:83590064-83590083 Msa0578930:intron 45.0%
TGGTCAAACCTCCTCATCAA+TGG - chr4_1:83590075-83590094 None:intergenic 45.0%
AGGCAAGGGTTTGACATTCA+TGG + chr4_1:83590219-83590238 Msa0578930:intron 45.0%
GGCAAGGGTTTGACATTCAT+GGG + chr4_1:83590220-83590239 Msa0578930:intron 45.0%
TCTTCTCCCTAGTGTCACAT+GGG - chr4_1:83590751-83590770 None:intergenic 45.0%
GAGAGAGTCAGAGACAAAGT+TGG + chr4_1:83590906-83590925 Msa0578930:intron 45.0%
!! AGACAAAGTTGGTGAGTGTG+TGG + chr4_1:83590917-83590936 Msa0578930:intron 45.0%
!! GACAAAGTTGGTGAGTGTGT+GGG + chr4_1:83590918-83590937 Msa0578930:intron 45.0%
!! ACAAAGTTGGTGAGTGTGTG+GGG + chr4_1:83590782-83590801 Msa0578930:intron 45.0%
AAAAATGACACGTGACGACG+TGG - chr4_1:83590946-83590965 None:intergenic 45.0%
CAAGGAATGTATGCCACATG+GGG + chr4_1:83590979-83590998 Msa0578930:intron 45.0%
GACCCCAATGGCAATGATTA+AGG + chr4_1:83591066-83591085 Msa0578930:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr4_1:83591349-83591368 Msa0578930:intron 45.0%
AACATACCGTAGGATTGCTG+TGG + chr4_1:83591556-83591575 Msa0578930:intron 45.0%
ACATACCGTAGGATTGCTGT+GGG + chr4_1:83591557-83591576 Msa0578930:intron 45.0%
GCATGAAATCGAGTGGTCAA+AGG - chr4_1:83591719-83591738 None:intergenic 45.0%
GTCAAATGTCATACTCCCTC+CGG - chr4_1:83592180-83592199 None:intergenic 45.0%
! CAAGTTGAAGCAGACAGAGA+TGG + chr4_1:83592351-83592370 Msa0578930:CDS 45.0%
GAATACCTGAAGAGGTGGTT+TGG + chr4_1:83592379-83592398 Msa0578930:CDS 45.0%
CAACTTCTCTTTGTAGCCTC+CGG - chr4_1:83592423-83592442 None:intergenic 45.0%
GAGGCTACAAAGAGAAGTTG+AGG + chr4_1:83592423-83592442 Msa0578930:CDS 45.0%
TGAGGAGATAACACAGTAGG+TGG - chr4_1:83592472-83592491 None:intergenic 45.0%
CTGTGAGGAGATAACACAGT+AGG - chr4_1:83592475-83592494 None:intergenic 45.0%
GATAAGGTTGAAGCTGGAAG+AGG - chr4_1:83592505-83592524 None:intergenic 45.0%
ACATCGGGGACACATTGATA+AGG - chr4_1:83592521-83592540 None:intergenic 45.0%
!! TAATTTTTCGGCAGCGACTG+TGG - chr4_1:83592569-83592588 None:intergenic 45.0%
! CACTCTAGGGGACAAAATGA+CGG - chr4_1:83592602-83592621 None:intergenic 45.0%
TCATGCTTGTCACACTCTAG+GGG - chr4_1:83592614-83592633 None:intergenic 45.0%
GTCATGCTTGTCACACTCTA+GGG - chr4_1:83592615-83592634 None:intergenic 45.0%
TGTCATGCTTGTCACACTCT+AGG - chr4_1:83592616-83592635 None:intergenic 45.0%
!!! AAAAAAAAAATCAAAATTTT+GGG - chr4_1:83589556-83589575 None:intergenic 5.0%
!!! TAAAAAAAAAATCAAAATTT+TGG - chr4_1:83589557-83589576 None:intergenic 5.0%
ACCTACAAGTTCCTCCAGCT+TGG + chr4_1:83587678-83587697 Msa0578930:CDS 50.0%
TCCAAGCTGGAGGAACTTGT+AGG - chr4_1:83587682-83587701 None:intergenic 50.0%
GTTAGACGCAGTTTCTTGCG+AGG - chr4_1:83588759-83588778 None:intergenic 50.0%
AAAACCGTAGGGCCAGGTAA+AGG + chr4_1:83589069-83589088 Msa0578930:intron 50.0%
! TTAGCCTTTACCTGGCCCTA+CGG - chr4_1:83589076-83589095 None:intergenic 50.0%
GATAACACTCCGCAAACCCT+AGG - chr4_1:83589765-83589784 None:intergenic 50.0%
CAAGACACACGCTACTCACA+AGG - chr4_1:83589825-83589844 None:intergenic 50.0%
TGAGTAGCGTGTGTCTTGCA+TGG + chr4_1:83589827-83589846 Msa0578930:intron 50.0%
GCATCAGCCTACATATGGCA+AGG + chr4_1:83589874-83589893 Msa0578930:intron 50.0%
CGGAATGCGCATCCAGATTA+GGG - chr4_1:83589952-83589971 None:intergenic 50.0%
TCGGAATGCGCATCCAGATT+AGG - chr4_1:83589953-83589972 None:intergenic 50.0%
CTTTGCAAAGCGTGGTGCTT+TGG - chr4_1:83589983-83590002 None:intergenic 50.0%
! AGGAGGTTTGACCATCGACT+TGG + chr4_1:83590081-83590100 Msa0578930:intron 50.0%
TACACCCCCATGTGACACTA+GGG + chr4_1:83590742-83590761 Msa0578930:intron 50.0%
TTCTCCCTAGTGTCACATGG+GGG - chr4_1:83590749-83590768 None:intergenic 50.0%
CTTCTCCCTAGTGTCACATG+GGG - chr4_1:83590750-83590769 None:intergenic 50.0%
CTCTTCTCCCTAGTGTCACA+TGG - chr4_1:83590752-83590771 None:intergenic 50.0%
TCTTCTCCCTAGTGCCACAT+GGG - chr4_1:83590888-83590907 None:intergenic 50.0%
AATGGTAACCAGGACCCCAA+TGG + chr4_1:83591054-83591073 Msa0578930:intron 50.0%
AATCATTGCCATTGGGGTCC+TGG - chr4_1:83591065-83591084 None:intergenic 50.0%
TCAGTGTAGTGTAGCACACG+AGG - chr4_1:83591669-83591688 None:intergenic 50.0%
TGGAGTGCGAATACCTGAAG+AGG + chr4_1:83592371-83592390 Msa0578930:CDS 50.0%
AGTGCGAATACCTGAAGAGG+TGG + chr4_1:83592374-83592393 Msa0578930:CDS 50.0%
AAGACCCAAACCACCTCTTC+AGG - chr4_1:83592387-83592406 None:intergenic 50.0%
GGAGCTTAGGGCTATGAAGA+TGG + chr4_1:83592444-83592463 Msa0578930:CDS 50.0%
TGCAGCTTAAGCTCCGACCA+AGG + chr4_1:83589027-83589046 Msa0578930:CDS 55.0%
TAAGCTCCGACCAAGGCAAG+TGG + chr4_1:83589034-83589053 Msa0578930:CDS 55.0%
ACACCTCCACTTGCCTTGGT+CGG - chr4_1:83589043-83589062 None:intergenic 55.0%
AACCACACCTCCACTTGCCT+TGG - chr4_1:83589047-83589066 None:intergenic 55.0%
GGTTTCAAAACCGTAGGGCC+AGG + chr4_1:83589063-83589082 Msa0578930:CDS 55.0%
GCTGATGCATACGCCAAACC+AGG - chr4_1:83589862-83589881 None:intergenic 55.0%
! CACATGGGGGTGTACAAGGA+TGG - chr4_1:83590736-83590755 None:intergenic 55.0%
! GTGTCACATGGGGGTGTACA+AGG - chr4_1:83590740-83590759 None:intergenic 55.0%
GTACACCCCCATGTGACACT+AGG + chr4_1:83590741-83590760 Msa0578930:intron 55.0%
TTCTCCCTAGTGCCACATGG+GGG - chr4_1:83590886-83590905 None:intergenic 55.0%
CTTCTCCCTAGTGCCACATG+GGG - chr4_1:83590887-83590906 None:intergenic 55.0%
CTCTTCTCCCTAGTGCCACA+TGG - chr4_1:83590889-83590908 None:intergenic 55.0%
GGAATGTATGCCACATGGGG+TGG + chr4_1:83590982-83591001 Msa0578930:intron 55.0%
! GATAGGTTGACCACCCCATG+TGG - chr4_1:83590995-83591014 None:intergenic 55.0%
! TAAACACGGACACGGTGCTG+TGG - chr4_1:83591631-83591650 None:intergenic 55.0%
CAGCACCGTGTCCGTGTTTA+TGG + chr4_1:83591631-83591650 Msa0578930:intron 55.0%
GGAAGAGGCTCAGAACTGTG+AGG - chr4_1:83592490-83592509 None:intergenic 55.0%
! TGGTGGTGACACGCTCACAT+CGG - chr4_1:83592537-83592556 None:intergenic 55.0%
!! TTTTTCGGCAGCGACTGTGG+CGG - chr4_1:83592566-83592585 None:intergenic 55.0%
GACCAAGGCAAGTGGAGGTG+TGG + chr4_1:83589042-83589061 Msa0578930:CDS 60.0%
! CACATGGGGGTGTGCAAGGA+TGG - chr4_1:83590873-83590892 None:intergenic 60.0%
CATCCTTGCACACCCCCATG+TGG + chr4_1:83590871-83590890 Msa0578930:intron 60.0%
CACACCCCCATGTGGCACTA+GGG + chr4_1:83590879-83590898 Msa0578930:intron 60.0%
GTGGTGACACGCTCACATCG+GGG - chr4_1:83592535-83592554 None:intergenic 60.0%
GGTGGTGACACGCTCACATC+GGG - chr4_1:83592536-83592555 None:intergenic 60.0%
! GACTGTGGCGGTGGTATTGG+TGG - chr4_1:83592554-83592573 None:intergenic 60.0%
AGCGACTGTGGCGGTGGTAT+TGG - chr4_1:83592557-83592576 None:intergenic 60.0%
GCTCCGACCAAGGCAAGTGG+AGG + chr4_1:83589037-83589056 Msa0578930:CDS 65.0%
! GTGCCACATGGGGGTGTGCA+AGG - chr4_1:83590877-83590896 None:intergenic 65.0%
GCACACCCCCATGTGGCACT+AGG + chr4_1:83590878-83590897 Msa0578930:intron 65.0%
CACTCGTGCACGATCGAGCG+TGG - chr4_1:83592662-83592681 None:intergenic 65.0%
TTCGGCAGCGACTGTGGCGG+TGG - chr4_1:83592563-83592582 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83587559 83592740 83587559 ID=Msa0578930;Name=Msa0578930
chr4_1 mRNA 83587559 83592740 83587559 ID=Msa0578930-mRNA-1;Parent=Msa0578930;Name=Msa0578930-mRNA-1;_AED=0.11;_eAED=0.11;_QI=108|1|1|1|0.66|0.75|4|116|207
chr4_1 exon 83587559 83587763 83587559 ID=Msa0578930-mRNA-1:exon:30501;Parent=Msa0578930-mRNA-1
chr4_1 exon 83588667 83588836 83588667 ID=Msa0578930-mRNA-1:exon:30502;Parent=Msa0578930-mRNA-1
chr4_1 exon 83589005 83589084 83589005 ID=Msa0578930-mRNA-1:exon:30503;Parent=Msa0578930-mRNA-1
chr4_1 exon 83592348 83592740 83592348 ID=Msa0578930-mRNA-1:exon:30504;Parent=Msa0578930-mRNA-1
chr4_1 five_prime_UTR 83587559 83587666 83587559 ID=Msa0578930-mRNA-1:five_prime_utr;Parent=Msa0578930-mRNA-1
chr4_1 CDS 83587667 83587763 83587667 ID=Msa0578930-mRNA-1:cds;Parent=Msa0578930-mRNA-1
chr4_1 CDS 83588667 83588836 83588667 ID=Msa0578930-mRNA-1:cds;Parent=Msa0578930-mRNA-1
chr4_1 CDS 83589005 83589084 83589005 ID=Msa0578930-mRNA-1:cds;Parent=Msa0578930-mRNA-1
chr4_1 CDS 83592348 83592624 83592348 ID=Msa0578930-mRNA-1:cds;Parent=Msa0578930-mRNA-1
chr4_1 three_prime_UTR 83592625 83592740 83592625 ID=Msa0578930-mRNA-1:three_prime_utr;Parent=Msa0578930-mRNA-1
Gene Sequence

>Msa0578930

ATGGCAGTTTTACCTACAAGTTCCTCCAGCTTGGAATTGACCATATCTATCCCAGGCTTTGCTTCTTCACCAATTTCTTTTCTCCCCTCATCATCTGTGAAAAAGTTGGATGTGAACCGAGTAACCGTAGAAGAAGAATGGATGGCACTAGAAGAGGAAGAAGAAAGCAGCGTTAATGGAGACACTCCTCGCAAGAAACTGCGTCTAACAAAGGAACAGTCCCATCTCCTTGAAGAAAGCTTCAGAAAAAACCACACTTTAAACCCAAAGCAGAAAGAGTGTTTGGCAATGCAGCTTAAGCTCCGACCAAGGCAAGTGGAGGTGTGGTTTCAAAACCGTAGGGCCAGGAGCAAGTTGAAGCAGACAGAGATGGAGTGCGAATACCTGAAGAGGTGGTTTGGGTCTTTAACTGAACAAAACCGGAGGCTACAAAGAGAAGTTGAGGAGCTTAGGGCTATGAAGATGGATCCACCTACTGTGTTATCTCCTCACAGTTCTGAGCCTCTTCCAGCTTCAACCTTATCAATGTGTCCCCGATGTGAGCGTGTCACCACCAATACCACCGCCACAGTCGCTGCCGAAAAATTAGTCATTGATGCCGTCATTTTGTCCCCTAGAGTGTGA

Protein sequence

>Msa0578930

MAVLPTSSSSLELTISIPGFASSPISFLPSSSVKKLDVNRVTVEEEWMALEEEEESSVNGDTPRKKLRLTKEQSHLLEESFRKNHTLNPKQKECLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKMDPPTVLSPHSSEPLPASTLSMCPRCERVTTNTTATVAAEKLVIDAVILSPRV*