AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693670 MtrunA17_Chr4g0044091 96.939 196 6 0 1 196 1 196 3.59e-139 387
Msa0693670 MtrunA17_Chr2g0308611 62.319 138 46 1 53 190 188 319 1.84e-52 171
Msa0693670 MtrunA17_Chr5g0400781 53.896 154 60 3 52 205 113 255 2.09e-49 161
Msa0693670 MtrunA17_Chr4g0055851 53.892 167 69 3 29 193 83 243 2.19e-49 162
Msa0693670 MtrunA17_Chr1g0175651 62.500 136 44 2 51 186 141 269 3.97e-49 162
Msa0693670 MtrunA17_Chr4g0054421 58.647 133 46 2 51 183 116 239 1.88e-48 159
Msa0693670 MtrunA17_Chr5g0399491 52.222 180 70 4 22 195 92 261 4.63e-48 159
Msa0693670 MtrunA17_Chr7g0258831 64.800 125 37 2 59 183 155 272 1.14e-47 158
Msa0693670 MtrunA17_Chr8g0335131 64.706 119 37 1 64 182 145 258 4.90e-47 156
Msa0693670 MtrunA17_Chr1g0151971 48.023 177 84 4 26 200 92 262 2.10e-44 149
Msa0693670 MtrunA17_Chr3g0135331 48.701 154 70 2 56 207 136 282 2.65e-36 129
Msa0693670 MtrunA17_Chr2g0299031 44.025 159 79 4 28 183 44 195 2.27e-35 124
Msa0693670 MtrunA17_Chr4g0071411 49.573 117 55 2 67 182 90 203 5.55e-29 107
Msa0693670 MtrunA17_Chr6g0450991 48.352 91 47 0 62 152 64 154 1.69e-19 84.3
Msa0693670 MtrunA17_Chr5g0415941 34.375 192 91 5 4 165 21 207 2.08e-17 79.0
Msa0693670 MtrunA17_Chr8g0362151 35.849 159 93 3 5 159 22 175 5.80e-17 77.0
Msa0693670 MtrunA17_Chr7g0217111 43.750 96 47 1 64 152 79 174 1.06e-16 76.3
Msa0693670 MtrunA17_Chr6g0453021 37.410 139 75 1 14 152 57 183 1.10e-16 76.3
Msa0693670 MtrunA17_Chr5g0416391 43.564 101 57 0 52 152 64 164 2.36e-16 75.5
Msa0693670 MtrunA17_Chr8g0362751 44.792 96 46 1 63 151 87 182 3.58e-16 75.1
Msa0693670 MtrunA17_Chr7g0265521 42.000 100 57 1 54 152 51 150 3.73e-16 74.3
Msa0693670 MtrunA17_Chr3g0119291 38.028 142 73 4 26 152 12 153 8.42e-16 73.6
Msa0693670 MtrunA17_Chr3g0123691 42.478 113 55 4 53 156 46 157 9.08e-16 74.3
Msa0693670 MtrunA17_Chr4g0060031 45.161 93 44 1 65 150 95 187 2.75e-14 70.5
Msa0693670 MtrunA17_Chr1g0179581 44.318 88 48 1 60 147 24 110 3.79e-14 65.9
Msa0693670 MtrunA17_Chr5g0403691 53.731 67 31 0 65 131 53 119 2.27e-13 66.2
Msa0693670 MtrunA17_Chr5g0403701 53.731 67 31 0 65 131 53 119 2.59e-13 65.9
Msa0693670 MtrunA17_Chr8g0381741 45.455 99 51 2 53 150 43 139 2.99e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693670 AT2G01430.1 66.489 188 48 4 1 184 74 250 4.46e-79 238
Msa0693670 AT1G70920.1 59.474 190 56 5 1 184 1 175 1.73e-57 181
Msa0693670 AT1G70920.2 62.025 158 41 3 33 184 1 145 2.44e-56 176
Msa0693670 AT5G06710.1 49.761 209 86 6 1 205 133 326 2.23e-52 171
Msa0693670 AT3G60390.1 62.406 133 42 3 52 182 148 274 6.12e-48 159
Msa0693670 AT4G37790.1 56.489 131 51 1 53 183 114 238 3.83e-47 156
Msa0693670 AT2G44910.1 64.228 123 37 2 64 185 162 278 4.62e-46 155
Msa0693670 AT4G16780.1 60.317 126 45 1 59 184 123 243 5.11e-46 154
Msa0693670 AT2G22800.1 57.895 133 46 2 51 183 103 225 8.02e-46 153
Msa0693670 AT4G17460.1 59.091 132 47 2 53 183 123 248 8.41e-45 150
Msa0693670 AT5G47370.1 59.701 134 44 3 51 183 119 243 3.42e-44 149
Msa0693670 AT2G01430.2 60.833 120 40 3 1 116 74 190 5.54e-41 139
Msa0693670 AT5G06710.4 48.305 118 50 4 1 116 133 241 6.57e-22 90.9
Msa0693670 AT3G01470.1 41.803 122 56 2 63 169 66 187 7.86e-18 79.7
Msa0693670 AT1G69780.1 43.810 105 59 0 52 156 72 176 3.15e-17 78.6
Msa0693670 AT1G26960.1 40.323 124 68 1 52 175 58 175 1.96e-16 75.9
Msa0693670 AT5G65310.1 46.512 86 46 0 65 150 72 157 1.87e-14 70.9
Msa0693670 AT5G65310.2 46.512 86 46 0 65 150 54 139 2.09e-14 70.5
Msa0693670 AT4G36740.2 43.750 96 54 0 56 151 47 142 2.82e-14 69.3
Msa0693670 AT4G36740.1 43.750 96 54 0 56 151 46 141 2.92e-14 69.3
Msa0693670 AT2G36610.1 40.367 109 56 2 53 153 60 167 4.17e-14 68.2
Msa0693670 AT2G18550.1 42.857 98 56 0 54 151 50 147 4.17e-14 68.9
Msa0693670 AT1G27045.5 52.778 72 34 0 65 136 25 96 9.62e-14 67.0
Msa0693670 AT1G27045.3 52.778 72 34 0 65 136 25 96 9.62e-14 67.0
Msa0693670 AT1G27045.2 52.778 72 34 0 65 136 17 88 1.17e-13 66.6
Msa0693670 AT1G27045.1 45.745 94 44 1 65 151 68 161 1.31e-13 67.4
Msa0693670 AT5G15150.1 45.455 88 48 0 65 152 115 202 1.49e-13 68.6
Msa0693670 AT5G03790.1 42.697 89 51 0 65 153 77 165 1.75e-13 67.4
Msa0693670 AT1G27045.4 52.778 72 34 0 65 136 68 139 3.37e-13 66.6
Msa0693670 AT4G40060.1 45.349 86 47 0 65 150 59 144 3.83e-13 67.0
Msa0693670 AT2G22430.1 46.512 86 46 0 65 150 62 147 4.60e-13 67.0
Msa0693670 AT3G01220.1 42.157 102 57 1 44 143 64 165 6.83e-13 66.2
Msa0693670 AT5G66700.1 47.561 82 41 1 49 130 57 136 1.20e-12 65.1
Msa0693670 AT5G03790.2 36.066 122 76 1 59 178 71 192 2.56e-12 63.5

Find 72 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGAAAGCAGCGTTAA+TGG 0.245343 4_4:+62610477 Msa0693670:CDS
TTCTTGATCTTCTTCTTCTA+TGG 0.256573 4_4:+62609330 Msa0693670:exon
AAAGAGAAGTTGAGGAGCTT+AGG 0.327770 4_4:+62614165 Msa0693670:CDS
CAAGAAGATCCTTGATGAAA+AGG 0.362713 4_4:-62609313 None:intergenic
AGCGACTGTGGCGGTGGTAT+TGG 0.370541 4_4:-62614288 None:intergenic
AAAGTGAAGAAAACAAATTT+AGG 0.381582 4_4:-62609279 None:intergenic
GATGAGGGGAGAAAAGATAT+TGG 0.398648 4_4:-62609418 None:intergenic
AAGACCCAAACCACCTCTTC+AGG 0.404339 4_4:-62614118 None:intergenic
GGTGGTGACACGCTCACATC+GGG 0.415895 4_4:-62614267 None:intergenic
GGTCTTTAACTGAGCAAAAC+CGG 0.425394 4_4:+62614135 Msa0693670:CDS
TGCCATCCATTCTTCTTCTA+CGG 0.429731 4_4:-62610445 None:intergenic
TGAAGCTTTCTTCAAGGAGA+TGG 0.431949 4_4:-62610542 None:intergenic
AAGAGAAGTTGAGGAGCTTA+GGG 0.432553 4_4:+62614166 Msa0693670:CDS
CAACTTCTCTTTGTAGCCTC+CGG 0.434325 4_4:-62614154 None:intergenic
ACAGAAGCAGAAAGAGTGTT+TGG 0.439755 4_4:+62610752 Msa0693670:intron
GAATACCTGAAGAGGTGGTT+TGG 0.451281 4_4:+62614113 Msa0693670:CDS
AGAAAACAAATTTAGGAGAA+AGG 0.458069 4_4:-62609272 None:intergenic
ATTGGTGAAGAAGCAAAGCC+TGG 0.460244 4_4:-62609400 None:intergenic
CTTGATGAAAAGGGAGGAAA+AGG 0.462170 4_4:-62609303 None:intergenic
ACCTACAAGTTCCTCCAGCT+TGG 0.470781 4_4:+62609360 Msa0693670:CDS
TGTCATGCCTGTCACACTCT+AGG 0.472466 4_4:-62614347 None:intergenic
AAGAAGATCCTTGATGAAAA+GGG 0.473088 4_4:-62609312 None:intergenic
AACCACACCTCCACTTGCCT+TGG 0.476841 4_4:-62610795 None:intergenic
GAAGCTTTCTTCAAGGAGAT+GGG 0.480176 4_4:-62610541 None:intergenic
TTTGTCCCCTAGAGTGTGAC+AGG 0.484186 4_4:+62614340 Msa0693670:exon
AATACCTGAAGAGGTGGTTT+GGG 0.488971 4_4:+62614114 Msa0693670:CDS
TTCGGCAGCGACTGTGGCGG+TGG 0.489852 4_4:-62614294 None:intergenic
CACATTGATAAGGTTGAAGC+TGG 0.491305 4_4:-62614242 None:intergenic
ATTCTTCTTCTACGGTTACT+CGG 0.502354 4_4:-62610437 None:intergenic
GTCATGCCTGTCACACTCTA+GGG 0.503409 4_4:-62614346 None:intergenic
GGAGCTTAGGGCTATGAAGA+TGG 0.505130 4_4:+62614178 Msa0693670:CDS
TAATTACTGGGTTTAAAGTG+TGG 0.513978 4_4:-62610572 None:intergenic
GACTGTGGCGGTGGTATTGG+TGG 0.515726 4_4:-62614285 None:intergenic
TCCAAGCTGGAGGAACTTGT+AGG 0.518571 4_4:-62609361 None:intergenic
GAGTAACCGTAGAAGAAGAA+TGG 0.519061 4_4:+62610439 Msa0693670:CDS
GGTTTCAAAACCGTAGGGCC+AGG 0.531848 4_4:+62610814 Msa0693670:CDS
AGCAAAGCCTGGGATAGATA+TGG 0.534631 4_4:-62609389 None:intergenic
CAAGTTGAAGCAGACAGAGA+TGG 0.539564 4_4:+62614085 Msa0693670:CDS
GATAAGGTTGAAGCTGGAAG+AGG 0.548416 4_4:-62614236 None:intergenic
GAATTGACCATATCTATCCC+AGG 0.565626 4_4:+62609382 Msa0693670:CDS
GAGCTTAGGGCTATGAAGAT+GGG 0.567814 4_4:+62614179 Msa0693670:CDS
AGAATGGATGGCACTAGAAG+AGG 0.577292 4_4:+62610455 Msa0693670:CDS
TTAGCCTTTACCTGGCCCTA+CGG 0.577524 4_4:-62610824 None:intergenic
AGATATGGTCAATTCCAAGC+TGG 0.579606 4_4:-62609374 None:intergenic
ACACCTCCACTTGCCTTGGT+CGG 0.580254 4_4:-62610791 None:intergenic
GTGCTACTTACCAGATGATG+AGG 0.582615 4_4:-62609434 None:intergenic
ACATCGGGGACACATTGATA+AGG 0.583310 4_4:-62614252 None:intergenic
TGCAGCTTAAGCTCCGACCA+AGG 0.586714 4_4:+62610778 Msa0693670:CDS
GACCAAGGCAAGTGGAGGTG+TGG 0.601638 4_4:+62610793 Msa0693670:CDS
AACCGTAGAAGAAGAATGGA+TGG 0.604290 4_4:+62610443 Msa0693670:CDS
TGGTGGTGACACGCTCACAT+CGG 0.609053 4_4:-62614268 None:intergenic
TGCTACTTACCAGATGATGA+GGG 0.609343 4_4:-62609433 None:intergenic
TAAGCTCCGACCAAGGCAAG+TGG 0.615426 4_4:+62610785 Msa0693670:CDS
AGGTGTGGTTTCAAAACCGT+AGG 0.616349 4_4:+62610808 Msa0693670:CDS
CTGTGAGGAGATAACACAGT+AGG 0.623475 4_4:-62614206 None:intergenic
CACTCTAGGGGACAAAATGA+CGG 0.630061 4_4:-62614333 None:intergenic
CAAGAAACTGCGTCTAACAA+AGG 0.630784 4_4:+62610512 Msa0693670:CDS
GAGGCTACAAAGAGAAGTTG+AGG 0.631401 4_4:+62614157 Msa0693670:CDS
TTGGTGAAGAAGCAAAGCCT+GGG 0.631749 4_4:-62609399 None:intergenic
TGGAGTGCGAATACCTGAAG+AGG 0.632527 4_4:+62614105 Msa0693670:CDS
TGAGGAGATAACACAGTAGG+TGG 0.632854 4_4:-62614203 None:intergenic
AAGATCCTTGATGAAAAGGG+AGG 0.635554 4_4:-62609309 None:intergenic
TATGGTCAATTCCAAGCTGG+AGG 0.639066 4_4:-62609371 None:intergenic
GTTAGACGCAGTTTCTTGCG+AGG 0.647544 4_4:-62610507 None:intergenic
GGTGTGGTTTCAAAACCGTA+GGG 0.647806 4_4:+62610809 Msa0693670:CDS
GCTCCGACCAAGGCAAGTGG+AGG 0.651935 4_4:+62610788 Msa0693670:CDS
TCATGCCTGTCACACTCTAG+GGG 0.663913 4_4:-62614345 None:intergenic
AGTGCGAATACCTGAAGAGG+TGG 0.667742 4_4:+62614108 Msa0693670:CDS
GCTACTTACCAGATGATGAG+GGG 0.700104 4_4:-62609432 None:intergenic
GGAAGAGGCTCAAAACTGTG+AGG 0.704587 4_4:-62614221 None:intergenic
CTTTAACTGAGCAAAACCGG+AGG 0.749476 4_4:+62614138 Msa0693670:CDS
GTGGTGACACGCTCACATCG+GGG 0.751626 4_4:-62614266 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAATAATAAATTTAA+GGG - chr4_4:62609709-62609728 None:intergenic 0.0%
!! TATAAAAAATAATAAATTTA+AGG - chr4_4:62609710-62609729 None:intergenic 0.0%
!! AATAAAATTAAAACAATGAT+CGG + chr4_4:62609645-62609664 Msa0693670:intron 10.0%
!! AACAAAAAGTTAATATTAAA+CGG + chr4_4:62609729-62609748 Msa0693670:intron 10.0%
!! AAAGTAAAAAATTGTATATT+AGG - chr4_4:62609856-62609875 None:intergenic 10.0%
!! TATATTATATATCTAACTTT+AGG - chr4_4:62610340-62610359 None:intergenic 10.0%
!! AAAAATTCATAATTCTTTAT+AGG - chr4_4:62610376-62610395 None:intergenic 10.0%
!! AAGAAAATATGAATAAATTA+AGG - chr4_4:62610639-62610658 None:intergenic 10.0%
!! AATTATATGCATATTAATTA+AGG - chr4_4:62610721-62610740 None:intergenic 10.0%
!! TTAATTAATATGCATATAAT+TGG + chr4_4:62610720-62610739 Msa0693670:intron 10.0%
!!! ATATTTCAATTCTTTTTTAT+CGG + chr4_4:62611022-62611041 Msa0693670:intron 10.0%
!! ATTAATAATGATAACATTTA+AGG + chr4_4:62612248-62612267 Msa0693670:intron 10.0%
!! TATTTAACATATTAATGTAA+GGG - chr4_4:62613375-62613394 None:intergenic 10.0%
!!! TTCATTTATTTTACCATTAT+TGG + chr4_4:62609580-62609599 Msa0693670:intron 15.0%
!! TTAAAAAATGAAACCAATAA+TGG - chr4_4:62609596-62609615 None:intergenic 15.0%
!!! TTGATCTTTATTGTTTTTTT+AGG + chr4_4:62609922-62609941 Msa0693670:intron 15.0%
!! TGAAAAAATGATATATTTGT+CGG + chr4_4:62610235-62610254 Msa0693670:intron 15.0%
!!! AAAGAATTATGAATTTTTGT+TGG + chr4_4:62610378-62610397 Msa0693670:intron 15.0%
!!! AAGAATTATGAATTTTTGTT+GGG + chr4_4:62610379-62610398 Msa0693670:intron 15.0%
!!! TTTCATATATAGTCTTAATT+AGG - chr4_4:62610957-62610976 None:intergenic 15.0%
!! TTGTTTAGTAATAAAATGTT+AGG - chr4_4:62611055-62611074 None:intergenic 15.0%
!! TGTGAATTTAATGATAAATA+AGG - chr4_4:62611215-62611234 None:intergenic 15.0%
!! GAATAATAACAAAGATAATA+TGG - chr4_4:62611607-62611626 None:intergenic 15.0%
!!! ATAATAATGTTTTTATGAAC+CGG + chr4_4:62612152-62612171 Msa0693670:intron 15.0%
!!! AATAAATAAGAGTATAATAG+TGG - chr4_4:62612428-62612447 None:intergenic 15.0%
!!! TACAAATAGAAATTTTATCT+TGG - chr4_4:62613310-62613329 None:intergenic 15.0%
!! GTATTTAACATATTAATGTA+AGG - chr4_4:62613376-62613395 None:intergenic 15.0%
!! TTTCTTAAGAAATGTAAAAA+AGG - chr4_4:62613430-62613449 None:intergenic 15.0%
!! AGTTATTAGTAGTATTAATT+AGG + chr4_4:62613550-62613569 Msa0693670:intron 15.0%
!! GTTATTAGTAGTATTAATTA+GGG + chr4_4:62613551-62613570 Msa0693670:intron 15.0%
!! TTATTAGTAGTATTAATTAG+GGG + chr4_4:62613552-62613571 Msa0693670:intron 15.0%
!!! GTGAAATTTTTGTTATTATT+GGG - chr4_4:62613994-62614013 None:intergenic 15.0%
!!! AGTGAAATTTTTGTTATTAT+TGG - chr4_4:62613995-62614014 None:intergenic 15.0%
!! AAAGTGAAGAAAACAAATTT+AGG - chr4_4:62609282-62609301 None:intergenic 20.0%
!! GAAGAAAAAAATAAGTATGT+GGG - chr4_4:62609768-62609787 None:intergenic 20.0%
!! AGAAGAAAAAAATAAGTATG+TGG - chr4_4:62609769-62609788 None:intergenic 20.0%
!!! TTATTTTTTTCTTCTTCTTG+AGG + chr4_4:62609774-62609793 Msa0693670:intron 20.0%
!! TACAATGACTGAAAAAAATA+AGG - chr4_4:62609883-62609902 None:intergenic 20.0%
!! GAAAAAATGATATATTTGTC+GGG + chr4_4:62610236-62610255 Msa0693670:intron 20.0%
!!! TTCTAAAACATCAAAAGAAA+AGG + chr4_4:62611354-62611373 Msa0693670:intron 20.0%
!!! TCATCGCTTAATTTAATTTT+AGG - chr4_4:62611522-62611541 None:intergenic 20.0%
!!! TAATAATGTTTTTATGAACC+GGG + chr4_4:62612153-62612172 Msa0693670:intron 20.0%
!! TCCACTAACTATAATTAATA+AGG + chr4_4:62612470-62612489 Msa0693670:intron 20.0%
!! CCACTAACTATAATTAATAA+GGG + chr4_4:62612471-62612490 Msa0693670:intron 20.0%
!!! TTCATAAAACTTACTTGTTT+TGG - chr4_4:62613242-62613261 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG - chr4_4:62613506-62613525 None:intergenic 20.0%
!! AGAACAAAAATAAAGTCAAA+TGG + chr4_4:62613632-62613651 Msa0693670:intron 20.0%
!! GAACAAAAATAAAGTCAAAT+GGG + chr4_4:62613633-62613652 Msa0693670:intron 20.0%
!! AACAAAAATAAAGTCAAATG+GGG + chr4_4:62613634-62613653 Msa0693670:intron 20.0%
!!! AAATGTGTAATCACTTTTTA+TGG - chr4_4:62613968-62613987 None:intergenic 20.0%
!!! CATTGATTAAAATGATGATA+TGG - chr4_4:62614029-62614048 None:intergenic 20.0%
!!! TGTACGTTGAATTAATATTT+TGG + chr4_4:62614049-62614068 Msa0693670:intron 20.0%
! AGAAAACAAATTTAGGAGAA+AGG - chr4_4:62609275-62609294 None:intergenic 25.0%
! TAATATTAAACGGCCTATAA+AGG + chr4_4:62609739-62609758 Msa0693670:intron 25.0%
! AATATTAAACGGCCTATAAA+GGG + chr4_4:62609740-62609759 Msa0693670:intron 25.0%
! TAACTTCCTAAAGCAAATAT+AGG + chr4_4:62609816-62609835 Msa0693670:intron 25.0%
! ATTTCACCTATATTTGCTTT+AGG - chr4_4:62609825-62609844 None:intergenic 25.0%
! AAAAAACTTTAGGTACTACT+TGG - chr4_4:62610299-62610318 None:intergenic 25.0%
! CCTCTCAAAAAAAAAACTTT+AGG - chr4_4:62610309-62610328 None:intergenic 25.0%
!!! CCTAAAGTTTTTTTTTTGAG+AGG + chr4_4:62610306-62610325 Msa0693670:intron 25.0%
!! ATGAATTTTTGTTGGGAAAT+TGG + chr4_4:62610386-62610405 Msa0693670:intron 25.0%
!! TGAATTTTTGTTGGGAAATT+GGG + chr4_4:62610387-62610406 Msa0693670:intron 25.0%
!!! ATTTTGGAGGTATAATTACT+GGG - chr4_4:62610587-62610606 None:intergenic 25.0%
!! TCTTGGTAAAAGAAAGATTT+TGG - chr4_4:62610603-62610622 None:intergenic 25.0%
! ACAATTAGCTCACTTAATTA+AGG + chr4_4:62610982-62611001 Msa0693670:intron 25.0%
! AAACATCAAAAGAAAAGGAA+TGG - chr4_4:62611359-62611378 None:intergenic 25.0%
! AGCTAAAACATCAAAAGAAA+AGG - chr4_4:62611128-62611147 None:intergenic 25.0%
!! TTTATTGTGTTTTCCAACAA+GGG + chr4_4:62611269-62611288 Msa0693670:intron 25.0%
!! CACTAAAACATCAAAAGTTT+TGG + chr4_4:62611318-62611337 Msa0693670:intron 25.0%
! AAACATCAAAAGAAAAGGAA+TGG + chr4_4:62611359-62611378 Msa0693670:intron 25.0%
! GTTGACATTCTATAACATAA+AGG + chr4_4:62611457-62611476 Msa0693670:intron 25.0%
!!! ATCTTTGTTATTATTCTCCT+AGG + chr4_4:62611611-62611630 Msa0693670:intron 25.0%
!!! TCTTTGTTATTATTCTCCTA+GGG + chr4_4:62611612-62611631 Msa0693670:intron 25.0%
! GTTCTTGAAAATTGTTTGAT+TGG + chr4_4:62611992-62612011 Msa0693670:intron 25.0%
!!! ATGAGTCAATTTTTGAAGTT+AGG + chr4_4:62612064-62612083 Msa0693670:intron 25.0%
! TAAAATTACGAATATGAACC+CGG - chr4_4:62612174-62612193 None:intergenic 25.0%
! ATTAATTATAGTTAGTGGAG+TGG - chr4_4:62612469-62612488 None:intergenic 25.0%
! CCCTTATTAATTATAGTTAG+TGG - chr4_4:62612474-62612493 None:intergenic 25.0%
! ACTTTAAACGACTATTATTG+TGG + chr4_4:62612566-62612585 Msa0693670:intron 25.0%
! ACTTTAAACGACTATTATTG+TGG + chr4_4:62612566-62612585 Msa0693670:intron 25.0%
!!! TTTTTATGTGTGAAAGTACA+AGG + chr4_4:62612849-62612868 Msa0693670:intron 25.0%
! AAATACAGTCAAAGTAAGAT+AGG - chr4_4:62612970-62612989 None:intergenic 25.0%
! AGAAATGTAAAAAAGGCAAT+GGG - chr4_4:62613423-62613442 None:intergenic 25.0%
! AAGAAATGTAAAAAAGGCAA+TGG - chr4_4:62613424-62613443 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + chr4_4:62613562-62613581 Msa0693670:intron 25.0%
! AATGCATCTAGTAATTTGAA+AGG + chr4_4:62613596-62613615 Msa0693670:intron 25.0%
! ATGCATCTAGTAATTTGAAA+GGG + chr4_4:62613597-62613616 Msa0693670:intron 25.0%
! TGAATAAAACTCCATAAACA+CGG - chr4_4:62613810-62613829 None:intergenic 25.0%
! AAGGTGCACTTAATAATTAT+TGG - chr4_4:62613865-62613884 None:intergenic 25.0%
! CATGATGATTATAAATGCAT+GGG - chr4_4:62613917-62613936 None:intergenic 25.0%
! TCATGATGATTATAAATGCA+TGG - chr4_4:62613918-62613937 None:intergenic 25.0%
AAGAAGATCCTTGATGAAAA+GGG - chr4_4:62609315-62609334 None:intergenic 30.0%
TTCTTGATCTTCTTCTTCTA+TGG + chr4_4:62609330-62609349 Msa0693670:exon 30.0%
ATACTAGACAAAGATGCAAA+AGG - chr4_4:62609474-62609493 None:intergenic 30.0%
ATAAAAAAACACAACTGCAG+TGG - chr4_4:62609686-62609705 None:intergenic 30.0%
CGTGCAAAATTAATTCATGT+AGG - chr4_4:62610133-62610152 None:intergenic 30.0%
!!! TTTTTCTGAAGCTTTCTTCA+AGG - chr4_4:62610551-62610570 None:intergenic 30.0%
! TAATTACTGGGTTTAAAGTG+TGG - chr4_4:62610575-62610594 None:intergenic 30.0%
!! GATTTTGGAGGTATAATTAC+TGG - chr4_4:62610588-62610607 None:intergenic 30.0%
! TGGTAAAAGAAAGATTTTGG+AGG - chr4_4:62610600-62610619 None:intergenic 30.0%
! AAGGTCATGTAAATTAGTCT+TGG - chr4_4:62610620-62610639 None:intergenic 30.0%
TAGAAATATAGCATCTCTCA+TGG - chr4_4:62610690-62610709 None:intergenic 30.0%
AGTTGGAAGCTAATATATAG+AGG - chr4_4:62610851-62610870 None:intergenic 30.0%
ATCAAAAGAAAAGGAATGGA+GGG - chr4_4:62611363-62611382 None:intergenic 30.0%
ATTCACATGTGATAAACCAA+AGG + chr4_4:62611228-62611247 Msa0693670:intron 30.0%
ATTAAAGTAGTTGTGACCTT+TGG - chr4_4:62611247-62611266 None:intergenic 30.0%
! GTTTATTGTGTTTTCCAACA+AGG + chr4_4:62611268-62611287 Msa0693670:intron 30.0%
ATCAAAAGAAAAGGAATGGA+GGG + chr4_4:62611363-62611382 Msa0693670:intron 30.0%
! AGGTTTATGTTAGGTTTTCA+TGG + chr4_4:62611760-62611779 Msa0693670:intron 30.0%
GCTAAGTTTCAAAATCATCA+TGG + chr4_4:62611893-62611912 Msa0693670:intron 30.0%
! ATCATGGATTTGTTTGTTGA+AGG + chr4_4:62611909-62611928 Msa0693670:intron 30.0%
CATTCGTTCTCGAAAATATT+TGG - chr4_4:62612047-62612066 None:intergenic 30.0%
!!! TCAATTTTTGAAGTTAGGCA+AGG + chr4_4:62612069-62612088 Msa0693670:intron 30.0%
!!! CAATTTTTGAAGTTAGGCAA+GGG + chr4_4:62612070-62612089 Msa0693670:intron 30.0%
ATAACATTTAAGGAGTTGCA+TGG + chr4_4:62612258-62612277 Msa0693670:intron 30.0%
!! AACTGATTTTGAGCTAAAGA+AGG + chr4_4:62612284-62612303 Msa0693670:intron 30.0%
!!! AGTGACAATATTTTTGAGAC+AGG - chr4_4:62612371-62612390 None:intergenic 30.0%
ACAAGGATGGTACAAAAAAA+AGG - chr4_4:62612611-62612630 None:intergenic 30.0%
TCAAATGAGTCATCTATTGT+GGG - chr4_4:62612931-62612950 None:intergenic 30.0%
TTCAAATGAGTCATCTATTG+TGG - chr4_4:62612932-62612951 None:intergenic 30.0%
!! TATTTTGAAAATACTCACCG+AGG - chr4_4:62613045-62613064 None:intergenic 30.0%
TCAACTGTGTCAAGTATTAT+GGG + chr4_4:62613143-62613162 Msa0693670:intron 30.0%
AAGACAGAGGAATTACATTA+AGG + chr4_4:62613177-62613196 Msa0693670:intron 30.0%
AGGAATTACATTAAGGAGAA+TGG + chr4_4:62613184-62613203 Msa0693670:intron 30.0%
ATCCTTAATCATTGCCATTA+GGG - chr4_4:62613219-62613238 None:intergenic 30.0%
ATTCTTTAACCATTACCTTG+AGG + chr4_4:62613333-62613352 Msa0693670:intron 30.0%
TGCATCTAGTAATTTGAAAG+GGG + chr4_4:62613598-62613617 Msa0693670:intron 30.0%
TTTCTCATTAAACATACCGT+AGG + chr4_4:62613711-62613730 Msa0693670:intron 30.0%
TTCTCATTAAACATACCGTA+GGG + chr4_4:62613712-62613731 Msa0693670:intron 30.0%
! TTGAGTTGTCTACTTTCATT+TGG - chr4_4:62613770-62613789 None:intergenic 30.0%
CTTAATAATTATTGGAGAGG+TGG - chr4_4:62613857-62613876 None:intergenic 30.0%
GCACTTAATAATTATTGGAG+AGG - chr4_4:62613860-62613879 None:intergenic 30.0%
ATGATTATAAATGCATGGGT+TGG - chr4_4:62613913-62613932 None:intergenic 30.0%
!! TTAATATTTTGGACACATGC+AGG + chr4_4:62614060-62614079 Msa0693670:intron 30.0%
CAAGAAGATCCTTGATGAAA+AGG - chr4_4:62609316-62609335 None:intergenic 35.0%
AAGACACAAACATGAAGAGA+GGG - chr4_4:62609533-62609552 None:intergenic 35.0%
AAAGACACAAACATGAAGAG+AGG - chr4_4:62609534-62609553 None:intergenic 35.0%
ATTCTTCTTCTACGGTTACT+CGG - chr4_4:62610440-62610459 None:intergenic 35.0%
AATCAGTCATGATGAGAAGT+TGG - chr4_4:62610868-62610887 None:intergenic 35.0%
CATCAAAAGAAAAGGAATGG+AGG - chr4_4:62611362-62611381 None:intergenic 35.0%
TACTCCTTAAAACTTGTGTC+AGG - chr4_4:62611151-62611170 None:intergenic 35.0%
TTTCTCAAGTTTACCCTTGT+TGG - chr4_4:62611285-62611304 None:intergenic 35.0%
CATCAAAAGAAAAGGAATGG+AGG + chr4_4:62611362-62611381 Msa0693670:intron 35.0%
ACAAAGATAATATGGCGAAG+AGG - chr4_4:62611599-62611618 None:intergenic 35.0%
TATTATTCTCCTAGGGTTTG+CGG + chr4_4:62611619-62611638 Msa0693670:intron 35.0%
!! TTGCGGAGTGTTATCTATTT+TGG + chr4_4:62611636-62611655 Msa0693670:intron 35.0%
!! TGCGGAGTGTTATCTATTTT+GGG + chr4_4:62611637-62611656 Msa0693670:intron 35.0%
CATATGGCAAGGTTTATGTT+AGG + chr4_4:62611751-62611770 Msa0693670:intron 35.0%
TCACCAAAAAACGCAAAATC+AGG + chr4_4:62611784-62611803 Msa0693670:intron 35.0%
! CAACCTGATTTTGCGTTTTT+TGG - chr4_4:62611790-62611809 None:intergenic 35.0%
TTTCAAGAACATGAACAGCT+AGG - chr4_4:62611982-62612001 None:intergenic 35.0%
ATGGGAATGTTCTCTTAGAT+AGG + chr4_4:62612103-62612122 Msa0693670:intron 35.0%
TGCAAGGATGGTACAATAAA+AGG - chr4_4:62612749-62612768 None:intergenic 35.0%
GTCAACTGTGTCAAGTATTA+TGG + chr4_4:62613142-62613161 Msa0693670:intron 35.0%
TACCCTAATGGCAATGATTA+AGG + chr4_4:62613214-62613233 Msa0693670:intron 35.0%
GATCCTTAATCATTGCCATT+AGG - chr4_4:62613220-62613239 None:intergenic 35.0%
GCATCTAGTAATTTGAAAGG+GGG + chr4_4:62613599-62613618 Msa0693670:intron 35.0%
TCAAATGGGGACTTAGATAT+AGG + chr4_4:62613647-62613666 Msa0693670:intron 35.0%
CAAATGGGGACTTAGATATA+GGG + chr4_4:62613648-62613667 Msa0693670:intron 35.0%
!!! GGCATCGATGACTAATTTTT+CGG - chr4_4:62614315-62614334 None:intergenic 35.0%
CTTGATGAAAAGGGAGGAAA+AGG - chr4_4:62609306-62609325 None:intergenic 40.0%
! CTTTTCCTCCCTTTTCATCA+AGG + chr4_4:62609304-62609323 Msa0693670:five_prime_UTR 40.0%
AAGATCCTTGATGAAAAGGG+AGG - chr4_4:62609312-62609331 None:intergenic 40.0%
AGATATGGTCAATTCCAAGC+TGG - chr4_4:62609377-62609396 None:intergenic 40.0%
GAATTGACCATATCTATCCC+AGG + chr4_4:62609382-62609401 Msa0693670:CDS 40.0%
GATGAGGGGAGAAAAGATAT+TGG - chr4_4:62609421-62609440 None:intergenic 40.0%
! TGCTACTTACCAGATGATGA+GGG - chr4_4:62609436-62609455 None:intergenic 40.0%
AGTATGTGGGAACCCTTTAT+AGG - chr4_4:62609755-62609774 None:intergenic 40.0%
! GGGTGTTACAGTGAAAAAGT+TGG + chr4_4:62610407-62610426 Msa0693670:intron 40.0%
GAGTAACCGTAGAAGAAGAA+TGG + chr4_4:62610439-62610458 Msa0693670:CDS 40.0%
AACCGTAGAAGAAGAATGGA+TGG + chr4_4:62610443-62610462 Msa0693670:CDS 40.0%
TGCCATCCATTCTTCTTCTA+CGG - chr4_4:62610448-62610467 None:intergenic 40.0%
GAAGAAGAAAGCAGCGTTAA+TGG + chr4_4:62610477-62610496 Msa0693670:CDS 40.0%
CAAGAAACTGCGTCTAACAA+AGG + chr4_4:62610512-62610531 Msa0693670:CDS 40.0%
GAAGCTTTCTTCAAGGAGAT+GGG - chr4_4:62610544-62610563 None:intergenic 40.0%
TGAAGCTTTCTTCAAGGAGA+TGG - chr4_4:62610545-62610564 None:intergenic 40.0%
TATAGCATCTCTCATGGACA+TGG - chr4_4:62610684-62610703 None:intergenic 40.0%
!! ACAGAAGCAGAAAGAGTGTT+TGG + chr4_4:62610752-62610771 Msa0693670:intron 40.0%
!! ATAGAGGATTAGCCTTTACC+TGG - chr4_4:62610835-62610854 None:intergenic 40.0%
! AGCTCCTGACACAAGTTTTA+AGG + chr4_4:62611144-62611163 Msa0693670:intron 40.0%
ACATAAACCTTGCCATATGC+AGG - chr4_4:62611750-62611769 None:intergenic 40.0%
TTTGCAAAGCGTAGTGCTTT+GGG - chr4_4:62611847-62611866 None:intergenic 40.0%
! TTTTGCAAAGCGTAGTGCTT+TGG - chr4_4:62611848-62611867 None:intergenic 40.0%
TGAAGGTTTGACCATTGATG+AGG + chr4_4:62611926-62611945 Msa0693670:intron 40.0%
GTTATCTGATTCCAAGTCGA+CGG - chr4_4:62611960-62611979 None:intergenic 40.0%
GAGAGAGTCAGAAACAAAGT+TGG + chr4_4:62612657-62612676 Msa0693670:intron 40.0%
TACAAGGAATGTATGCCACA+TGG + chr4_4:62612865-62612884 Msa0693670:intron 40.0%
ACAAGGAATGTATGCCACAT+GGG + chr4_4:62612866-62612885 Msa0693670:intron 40.0%
CTGTGTCAAGTATTATGGGA+CGG + chr4_4:62613147-62613166 Msa0693670:intron 40.0%
AATGGTAACCAGTACCCTAA+TGG + chr4_4:62613202-62613221 Msa0693670:intron 40.0%
AATCATTGCCATTAGGGTAC+TGG - chr4_4:62613213-62613232 None:intergenic 40.0%
AAACTCCATAAACACGGACA+CGG - chr4_4:62613804-62613823 None:intergenic 40.0%
! GTCTAAAGCATGAAATCGAG+TGG - chr4_4:62613891-62613910 None:intergenic 40.0%
AATACCTGAAGAGGTGGTTT+GGG + chr4_4:62614114-62614133 Msa0693670:CDS 40.0%
GGTCTTTAACTGAGCAAAAC+CGG + chr4_4:62614135-62614154 Msa0693670:CDS 40.0%
AAAGAGAAGTTGAGGAGCTT+AGG + chr4_4:62614165-62614184 Msa0693670:CDS 40.0%
AAGAGAAGTTGAGGAGCTTA+GGG + chr4_4:62614166-62614185 Msa0693670:CDS 40.0%
CACATTGATAAGGTTGAAGC+TGG - chr4_4:62614245-62614264 None:intergenic 40.0%
TATGGTCAATTCCAAGCTGG+AGG - chr4_4:62609374-62609393 None:intergenic 45.0%
AGCAAAGCCTGGGATAGATA+TGG - chr4_4:62609392-62609411 None:intergenic 45.0%
TTGGTGAAGAAGCAAAGCCT+GGG - chr4_4:62609402-62609421 None:intergenic 45.0%
ATTGGTGAAGAAGCAAAGCC+TGG - chr4_4:62609403-62609422 None:intergenic 45.0%
! TCTTTTCTCCCCTCATCATC+TGG + chr4_4:62609424-62609443 Msa0693670:CDS 45.0%
GCTACTTACCAGATGATGAG+GGG - chr4_4:62609435-62609454 None:intergenic 45.0%
!! GTGCTACTTACCAGATGATG+AGG - chr4_4:62609437-62609456 None:intergenic 45.0%
AGAATGGATGGCACTAGAAG+AGG + chr4_4:62610455-62610474 Msa0693670:CDS 45.0%
AGGTGTGGTTTCAAAACCGT+AGG + chr4_4:62610808-62610827 Msa0693670:CDS 45.0%
GGTGTGGTTTCAAAACCGTA+GGG + chr4_4:62610809-62610828 Msa0693670:CDS 45.0%
TTTGGGTCGTCGTGTTCAAT+TGG + chr4_4:62611654-62611673 Msa0693670:intron 45.0%
TTGGGTCGTCGTGTTCAATT+GGG + chr4_4:62611655-62611674 Msa0693670:intron 45.0%
AAGACACACGCTACTCACAA+GGG - chr4_4:62611690-62611709 None:intergenic 45.0%
! CTTGCATGGCTATGTTTTCC+TGG + chr4_4:62611707-62611726 Msa0693670:intron 45.0%
CATATGCAGGCTGATGCATA+CGG - chr4_4:62611737-62611756 None:intergenic 45.0%
CAGAATGCGCATCCAGATTA+GGG - chr4_4:62611817-62611836 None:intergenic 45.0%
TCAGAATGCGCATCCAGATT+AGG - chr4_4:62611818-62611837 None:intergenic 45.0%
AGGTTTGACCATTGATGAGG+AGG + chr4_4:62611929-62611948 Msa0693670:intron 45.0%
AGGCAAGGGTTTGACATTCA+TGG + chr4_4:62612084-62612103 Msa0693670:intron 45.0%
GGCAAGGGTTTGACATTCAT+GGG + chr4_4:62612085-62612104 Msa0693670:intron 45.0%
TCTTCTCCCTAGTGTCACAT+GGG - chr4_4:62612639-62612658 None:intergenic 45.0%
GAGAGAGTCAGAGACAAAGT+TGG + chr4_4:62612794-62612813 Msa0693670:intron 45.0%
!! AGACAAAGTTGGTGAGTGTG+TGG + chr4_4:62612805-62612824 Msa0693670:intron 45.0%
!! GACAAAGTTGGTGAGTGTGT+GGG + chr4_4:62612806-62612825 Msa0693670:intron 45.0%
!! ACAAAGTTGGTGAGTGTGTG+GGG + chr4_4:62612670-62612689 Msa0693670:intron 45.0%
AAAAATGACACGTGACGACG+TGG - chr4_4:62612834-62612853 None:intergenic 45.0%
CAAGGAATGTATGCCACATG+GGG + chr4_4:62612867-62612886 Msa0693670:intron 45.0%
GTCATCTATTGTGGGACTGA+GGG - chr4_4:62612923-62612942 None:intergenic 45.0%
AGTCATCTATTGTGGGACTG+AGG - chr4_4:62612924-62612943 None:intergenic 45.0%
AGATGTCGTTAGATTCGCCT+CGG + chr4_4:62613025-62613044 Msa0693670:intron 45.0%
TGTCAAGTATTATGGGACGG+AGG + chr4_4:62613150-62613169 Msa0693670:intron 45.0%
GTCAAGTATTATGGGACGGA+GGG + chr4_4:62613151-62613170 Msa0693670:intron 45.0%
AACCATTACCTTGAGGACAC+TGG + chr4_4:62613340-62613359 Msa0693670:intron 45.0%
AACCAGTGTCCTCAAGGTAA+TGG - chr4_4:62613345-62613364 None:intergenic 45.0%
TGCCTACATTAAGGGACGAA+GGG - chr4_4:62613400-62613419 None:intergenic 45.0%
GCAATGGGTGCCTACATTAA+GGG - chr4_4:62613408-62613427 None:intergenic 45.0%
TGGGGACTTAGATATAGGGA+CGG + chr4_4:62613652-62613671 Msa0693670:intron 45.0%
GACTTAGATATAGGGACGGA+GGG + chr4_4:62613656-62613675 Msa0693670:intron 45.0%
TTTATCCCACAGCAACCCTA+CGG - chr4_4:62613730-62613749 None:intergenic 45.0%
GCATGAAATCGAGTGGTCAA+AGG - chr4_4:62613884-62613903 None:intergenic 45.0%
! CAAGTTGAAGCAGACAGAGA+TGG + chr4_4:62614085-62614104 Msa0693670:CDS 45.0%
GAATACCTGAAGAGGTGGTT+TGG + chr4_4:62614113-62614132 Msa0693670:CDS 45.0%
CTTTAACTGAGCAAAACCGG+AGG + chr4_4:62614138-62614157 Msa0693670:CDS 45.0%
CAACTTCTCTTTGTAGCCTC+CGG - chr4_4:62614157-62614176 None:intergenic 45.0%
GAGGCTACAAAGAGAAGTTG+AGG + chr4_4:62614157-62614176 Msa0693670:CDS 45.0%
GAGCTTAGGGCTATGAAGAT+GGG + chr4_4:62614179-62614198 Msa0693670:CDS 45.0%
TGAGGAGATAACACAGTAGG+TGG - chr4_4:62614206-62614225 None:intergenic 45.0%
CTGTGAGGAGATAACACAGT+AGG - chr4_4:62614209-62614228 None:intergenic 45.0%
GATAAGGTTGAAGCTGGAAG+AGG - chr4_4:62614239-62614258 None:intergenic 45.0%
ACATCGGGGACACATTGATA+AGG - chr4_4:62614255-62614274 None:intergenic 45.0%
!! TAATTTTTCGGCAGCGACTG+TGG - chr4_4:62614303-62614322 None:intergenic 45.0%
! CACTCTAGGGGACAAAATGA+CGG - chr4_4:62614336-62614355 None:intergenic 45.0%
!!! AAAAAATAATTCAAAATTTT+GGG - chr4_4:62611416-62611435 None:intergenic 5.0%
!!! AAAAAAATAATTCAAAATTT+TGG - chr4_4:62611417-62611436 None:intergenic 5.0%
ACCTACAAGTTCCTCCAGCT+TGG + chr4_4:62609360-62609379 Msa0693670:CDS 50.0%
TCCAAGCTGGAGGAACTTGT+AGG - chr4_4:62609364-62609383 None:intergenic 50.0%
GTTAGACGCAGTTTCTTGCG+AGG - chr4_4:62610510-62610529 None:intergenic 50.0%
AAAACCGTAGGGCCAGGTAA+AGG + chr4_4:62610820-62610839 Msa0693670:intron 50.0%
! TTAGCCTTTACCTGGCCCTA+CGG - chr4_4:62610827-62610846 None:intergenic 50.0%
GATAACACTCCGCAAACCCT+AGG - chr4_4:62611631-62611650 None:intergenic 50.0%
CAAGACACACGCTACTCACA+AGG - chr4_4:62611691-62611710 None:intergenic 50.0%
TGAGTAGCGTGTGTCTTGCA+TGG + chr4_4:62611693-62611712 Msa0693670:intron 50.0%
CGTATGCATCAGCCTGCATA+TGG + chr4_4:62611735-62611754 Msa0693670:intron 50.0%
! TCAGGTTGCAGACCCTAATC+TGG + chr4_4:62611802-62611821 Msa0693670:intron 50.0%
CGGTCAAACCTCCTCATCAA+TGG - chr4_4:62611940-62611959 None:intergenic 50.0%
TACACCCCCATGTGACACTA+GGG + chr4_4:62612630-62612649 Msa0693670:intron 50.0%
TTCTCCCTAGTGTCACATGG+GGG - chr4_4:62612637-62612656 None:intergenic 50.0%
CTTCTCCCTAGTGTCACATG+GGG - chr4_4:62612638-62612657 None:intergenic 50.0%
CTCTTCTCCCTAGTGTCACA+TGG - chr4_4:62612640-62612659 None:intergenic 50.0%
TCTTCTCCCTAGTGCCACAT+GGG - chr4_4:62612776-62612795 None:intergenic 50.0%
CTTGCTAACCAGTGTCCTCA+AGG - chr4_4:62613351-62613370 None:intergenic 50.0%
CTCCCTTCGTCCCTTAATGT+AGG + chr4_4:62613395-62613414 Msa0693670:intron 50.0%
GTGCCTACATTAAGGGACGA+AGG - chr4_4:62613401-62613420 None:intergenic 50.0%
GGCAATGGGTGCCTACATTA+AGG - chr4_4:62613409-62613428 None:intergenic 50.0%
GGACTTAGATATAGGGACGG+AGG + chr4_4:62613655-62613674 Msa0693670:intron 50.0%
AACATACCGTAGGGTTGCTG+TGG + chr4_4:62613721-62613740 Msa0693670:intron 50.0%
ACATACCGTAGGGTTGCTGT+GGG + chr4_4:62613722-62613741 Msa0693670:intron 50.0%
TCAGTGTAGTGTAGCACACG+AGG - chr4_4:62613834-62613853 None:intergenic 50.0%
TGGAGTGCGAATACCTGAAG+AGG + chr4_4:62614105-62614124 Msa0693670:CDS 50.0%
AGTGCGAATACCTGAAGAGG+TGG + chr4_4:62614108-62614127 Msa0693670:CDS 50.0%
AAGACCCAAACCACCTCTTC+AGG - chr4_4:62614121-62614140 None:intergenic 50.0%
GGAGCTTAGGGCTATGAAGA+TGG + chr4_4:62614178-62614197 Msa0693670:CDS 50.0%
GGAAGAGGCTCAAAACTGTG+AGG - chr4_4:62614224-62614243 None:intergenic 50.0%
TTTGTCCCCTAGAGTGTGAC+AGG + chr4_4:62614340-62614359 Msa0693670:exon 50.0%
TCATGCCTGTCACACTCTAG+GGG - chr4_4:62614348-62614367 None:intergenic 50.0%
GTCATGCCTGTCACACTCTA+GGG - chr4_4:62614349-62614368 None:intergenic 50.0%
TGTCATGCCTGTCACACTCT+AGG - chr4_4:62614350-62614369 None:intergenic 50.0%
TGCAGCTTAAGCTCCGACCA+AGG + chr4_4:62610778-62610797 Msa0693670:CDS 55.0%
TAAGCTCCGACCAAGGCAAG+TGG + chr4_4:62610785-62610804 Msa0693670:CDS 55.0%
ACACCTCCACTTGCCTTGGT+CGG - chr4_4:62610794-62610813 None:intergenic 55.0%
AACCACACCTCCACTTGCCT+TGG - chr4_4:62610798-62610817 None:intergenic 55.0%
GGTTTCAAAACCGTAGGGCC+AGG + chr4_4:62610814-62610833 Msa0693670:CDS 55.0%
GCTGATGCATACGGCAAACC+AGG - chr4_4:62611728-62611747 None:intergenic 55.0%
GCATCAGCCTGCATATGGCA+AGG + chr4_4:62611740-62611759 Msa0693670:intron 55.0%
! AGGAGGTTTGACCGTCGACT+TGG + chr4_4:62611946-62611965 Msa0693670:intron 55.0%
! CACATGGGGGTGTACAAGGA+TGG - chr4_4:62612624-62612643 None:intergenic 55.0%
! GTGTCACATGGGGGTGTACA+AGG - chr4_4:62612628-62612647 None:intergenic 55.0%
GTACACCCCCATGTGACACT+AGG + chr4_4:62612629-62612648 Msa0693670:intron 55.0%
TTCTCCCTAGTGCCACATGG+GGG - chr4_4:62612774-62612793 None:intergenic 55.0%
CTTCTCCCTAGTGCCACATG+GGG - chr4_4:62612775-62612794 None:intergenic 55.0%
CTCTTCTCCCTAGTGCCACA+TGG - chr4_4:62612777-62612796 None:intergenic 55.0%
GGAATGTATGCCACATGGGG+TGG + chr4_4:62612870-62612889 Msa0693670:intron 55.0%
GATACGTTGACCACCCCATG+TGG - chr4_4:62612883-62612902 None:intergenic 55.0%
! TAAACACGGACACGGTGCTG+TGG - chr4_4:62613796-62613815 None:intergenic 55.0%
CAGCACCGTGTCCGTGTTTA+TGG + chr4_4:62613796-62613815 Msa0693670:intron 55.0%
! TGGTGGTGACACGCTCACAT+CGG - chr4_4:62614271-62614290 None:intergenic 55.0%
!! TTTTTCGGCAGCGACTGTGG+CGG - chr4_4:62614300-62614319 None:intergenic 55.0%
GACCAAGGCAAGTGGAGGTG+TGG + chr4_4:62610793-62610812 Msa0693670:CDS 60.0%
! CACATGGGGGTGTGCAAGGA+TGG - chr4_4:62612761-62612780 None:intergenic 60.0%
CATCCTTGCACACCCCCATG+TGG + chr4_4:62612759-62612778 Msa0693670:intron 60.0%
CACACCCCCATGTGGCACTA+GGG + chr4_4:62612767-62612786 Msa0693670:intron 60.0%
GGACGGAGGGAGTAAGACAG+AGG + chr4_4:62613164-62613183 Msa0693670:intron 60.0%
GTGGTGACACGCTCACATCG+GGG - chr4_4:62614269-62614288 None:intergenic 60.0%
GGTGGTGACACGCTCACATC+GGG - chr4_4:62614270-62614289 None:intergenic 60.0%
! GACTGTGGCGGTGGTATTGG+TGG - chr4_4:62614288-62614307 None:intergenic 60.0%
AGCGACTGTGGCGGTGGTAT+TGG - chr4_4:62614291-62614310 None:intergenic 60.0%
GCTCCGACCAAGGCAAGTGG+AGG + chr4_4:62610788-62610807 Msa0693670:CDS 65.0%
! GTGCCACATGGGGGTGTGCA+AGG - chr4_4:62612765-62612784 None:intergenic 65.0%
GCACACCCCCATGTGGCACT+AGG + chr4_4:62612766-62612785 Msa0693670:intron 65.0%
TTCGGCAGCGACTGTGGCGG+TGG - chr4_4:62614297-62614316 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 62609241 62614474 62609241 ID=Msa0693670;Name=Msa0693670
chr4_4 mRNA 62609241 62614474 62609241 ID=Msa0693670-mRNA-1;Parent=Msa0693670;Name=Msa0693670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=108|1|1|1|1|1|4|116|207
chr4_4 exon 62609241 62609445 62609241 ID=Msa0693670-mRNA-1:exon:17583;Parent=Msa0693670-mRNA-1
chr4_4 exon 62610418 62610587 62610418 ID=Msa0693670-mRNA-1:exon:17584;Parent=Msa0693670-mRNA-1
chr4_4 exon 62610756 62610835 62610756 ID=Msa0693670-mRNA-1:exon:17585;Parent=Msa0693670-mRNA-1
chr4_4 exon 62614082 62614474 62614082 ID=Msa0693670-mRNA-1:exon:17586;Parent=Msa0693670-mRNA-1
chr4_4 five_prime_UTR 62609241 62609348 62609241 ID=Msa0693670-mRNA-1:five_prime_utr;Parent=Msa0693670-mRNA-1
chr4_4 CDS 62609349 62609445 62609349 ID=Msa0693670-mRNA-1:cds;Parent=Msa0693670-mRNA-1
chr4_4 CDS 62610418 62610587 62610418 ID=Msa0693670-mRNA-1:cds;Parent=Msa0693670-mRNA-1
chr4_4 CDS 62610756 62610835 62610756 ID=Msa0693670-mRNA-1:cds;Parent=Msa0693670-mRNA-1
chr4_4 CDS 62614082 62614358 62614082 ID=Msa0693670-mRNA-1:cds;Parent=Msa0693670-mRNA-1
chr4_4 three_prime_UTR 62614359 62614474 62614359 ID=Msa0693670-mRNA-1:three_prime_utr;Parent=Msa0693670-mRNA-1
Gene Sequence

>Msa0693670

ATGGCAGTTTTACCTACAAGTTCCTCCAGCTTGGAATTGACCATATCTATCCCAGGCTTTGCTTCTTCACCAATATCTTTTCTCCCCTCATCATCTGTGAAAAAGTTGGATGTGAACCGAGTAACCGTAGAAGAAGAATGGATGGCACTAGAAGAGGAAGAAGAAAGCAGCGTTAATGGAGACACTCCTCGCAAGAAACTGCGTCTAACAAAGGAACAGTCCCATCTCCTTGAAGAAAGCTTCAGAAAAAACCACACTTTAAACCCAAAGCAGAAAGAGTGTTTGGCAATGCAGCTTAAGCTCCGACCAAGGCAAGTGGAGGTGTGGTTTCAAAACCGTAGGGCCAGGAGCAAGTTGAAGCAGACAGAGATGGAGTGCGAATACCTGAAGAGGTGGTTTGGGTCTTTAACTGAGCAAAACCGGAGGCTACAAAGAGAAGTTGAGGAGCTTAGGGCTATGAAGATGGGTCCACCTACTGTGTTATCTCCTCACAGTTTTGAGCCTCTTCCAGCTTCAACCTTATCAATGTGTCCCCGATGTGAGCGTGTCACCACCAATACCACCGCCACAGTCGCTGCCGAAAAATTAGTCATCGATGCCGTCATTTTGTCCCCTAGAGTGTGA

Protein sequence

>Msa0693670

MAVLPTSSSSLELTISIPGFASSPISFLPSSSVKKLDVNRVTVEEEWMALEEEEESSVNGDTPRKKLRLTKEQSHLLEESFRKNHTLNPKQKECLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKMGPPTVLSPHSFEPLPASTLSMCPRCERVTTNTTATVAAEKLVIDAVILSPRV*