AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1362910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1362910 MtrunA17_Chr4g0044091 97.449 196 5 0 1 196 1 196 3.87e-140 389
Msa1362910 MtrunA17_Chr2g0308611 62.319 138 46 1 53 190 188 319 1.46e-52 172
Msa1362910 MtrunA17_Chr5g0400781 53.896 154 60 3 52 205 113 255 1.96e-49 162
Msa1362910 MtrunA17_Chr4g0055851 53.892 167 69 3 29 193 83 243 2.03e-49 162
Msa1362910 MtrunA17_Chr1g0175651 62.500 136 44 2 51 186 141 269 2.97e-49 162
Msa1362910 MtrunA17_Chr4g0054421 58.647 133 46 2 51 183 116 239 1.77e-48 159
Msa1362910 MtrunA17_Chr5g0399491 59.124 137 51 1 59 195 130 261 4.83e-48 159
Msa1362910 MtrunA17_Chr7g0258831 64.800 125 37 2 59 183 155 272 9.42e-48 158
Msa1362910 MtrunA17_Chr8g0335131 64.706 119 37 1 64 182 145 258 4.69e-47 156
Msa1362910 MtrunA17_Chr1g0151971 48.023 177 84 4 26 200 92 262 1.53e-43 147
Msa1362910 MtrunA17_Chr2g0299031 44.025 159 79 4 28 183 44 195 9.01e-36 125
Msa1362910 MtrunA17_Chr3g0135331 48.701 154 70 2 56 207 136 282 1.93e-35 126
Msa1362910 MtrunA17_Chr4g0071411 49.153 118 54 3 67 182 90 203 1.91e-28 106
Msa1362910 MtrunA17_Chr6g0450991 48.352 91 47 0 62 152 64 154 1.69e-19 84.3
Msa1362910 MtrunA17_Chr5g0415941 34.197 193 92 5 4 166 21 208 1.44e-17 79.3
Msa1362910 MtrunA17_Chr8g0362151 35.849 159 93 3 5 159 22 175 5.40e-17 77.4
Msa1362910 MtrunA17_Chr7g0217111 43.750 96 47 1 64 152 79 174 9.73e-17 76.3
Msa1362910 MtrunA17_Chr6g0453021 37.410 139 75 1 14 152 57 183 1.14e-16 76.3
Msa1362910 MtrunA17_Chr5g0416391 43.564 101 57 0 52 152 64 164 2.36e-16 75.5
Msa1362910 MtrunA17_Chr8g0362751 44.792 96 46 1 63 151 87 182 3.21e-16 75.1
Msa1362910 MtrunA17_Chr7g0265521 42.000 100 57 1 54 152 51 150 3.61e-16 74.3
Msa1362910 MtrunA17_Chr3g0123691 42.478 113 55 4 53 156 46 157 7.36e-16 74.3
Msa1362910 MtrunA17_Chr3g0119291 38.028 142 73 4 26 152 12 153 8.68e-16 73.6
Msa1362910 MtrunA17_Chr4g0060031 43.182 88 50 0 65 152 95 182 2.54e-14 70.5
Msa1362910 MtrunA17_Chr1g0179581 44.318 88 48 1 60 147 24 110 4.21e-14 65.9
Msa1362910 MtrunA17_Chr5g0403701 53.731 67 31 0 65 131 53 119 2.36e-13 66.2
Msa1362910 MtrunA17_Chr5g0403691 53.731 67 31 0 65 131 53 119 2.39e-13 66.2
Msa1362910 MtrunA17_Chr8g0381741 45.455 99 51 2 53 150 43 139 3.37e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1362910 AT2G01430.1 66.489 188 48 4 1 184 74 250 4.37e-79 238
Msa1362910 AT1G70920.1 59.474 190 56 5 1 184 1 175 1.19e-57 181
Msa1362910 AT1G70920.2 62.025 158 41 3 33 184 1 145 1.68e-56 177
Msa1362910 AT5G06710.1 49.761 209 86 6 1 205 133 326 2.48e-52 171
Msa1362910 AT4G37790.1 56.489 131 51 1 53 183 114 238 3.19e-47 156
Msa1362910 AT3G60390.1 62.406 133 42 3 52 182 148 274 5.13e-47 157
Msa1362910 AT4G16780.1 61.905 126 43 2 59 184 123 243 9.95e-47 155
Msa1362910 AT2G22800.1 57.895 133 46 2 51 183 103 225 6.53e-46 153
Msa1362910 AT2G44910.1 62.295 122 41 1 64 185 162 278 3.18e-45 152
Msa1362910 AT4G17460.1 58.015 131 50 1 53 183 123 248 1.71e-44 150
Msa1362910 AT5G47370.1 58.647 133 47 2 51 183 119 243 4.24e-44 149
Msa1362910 AT2G01430.2 60.833 120 40 3 1 116 74 190 6.24e-41 138
Msa1362910 AT5G06710.4 48.305 118 50 4 1 116 133 241 6.30e-22 90.9
Msa1362910 AT3G01470.1 47.778 90 47 0 63 152 66 155 8.19e-18 79.7
Msa1362910 AT1G69780.1 43.810 105 59 0 52 156 72 176 3.08e-17 78.6
Msa1362910 AT1G26960.1 40.323 124 68 1 52 175 58 175 9.31e-17 76.6
Msa1362910 AT5G65310.1 46.512 86 46 0 65 150 72 157 1.76e-14 70.9
Msa1362910 AT5G65310.2 46.512 86 46 0 65 150 54 139 1.86e-14 70.9
Msa1362910 AT4G36740.2 43.750 96 54 0 56 151 47 142 2.97e-14 69.3
Msa1362910 AT4G36740.1 43.750 96 54 0 56 151 46 141 3.37e-14 68.9
Msa1362910 AT2G36610.1 40.367 109 56 2 53 153 60 167 3.80e-14 68.2
Msa1362910 AT2G18550.1 42.857 98 56 0 54 151 50 147 4.67e-14 68.6
Msa1362910 AT1G27045.5 52.778 72 34 0 65 136 25 96 9.82e-14 67.0
Msa1362910 AT1G27045.3 52.778 72 34 0 65 136 25 96 9.82e-14 67.0
Msa1362910 AT1G27045.1 45.745 94 44 1 65 151 68 161 1.14e-13 67.8
Msa1362910 AT1G27045.2 52.778 72 34 0 65 136 17 88 1.20e-13 66.6
Msa1362910 AT5G15150.1 45.455 88 48 0 65 152 115 202 1.65e-13 68.2
Msa1362910 AT5G03790.1 42.697 89 51 0 65 153 77 165 1.79e-13 67.4
Msa1362910 AT4G40060.1 45.349 86 47 0 65 150 59 144 3.37e-13 67.4
Msa1362910 AT1G27045.4 52.778 72 34 0 65 136 68 139 3.40e-13 66.6
Msa1362910 AT2G22430.1 46.512 86 46 0 65 150 62 147 4.56e-13 67.0
Msa1362910 AT3G01220.1 42.157 102 57 1 44 143 64 165 7.10e-13 66.2
Msa1362910 AT5G66700.1 47.561 82 41 1 49 130 57 136 1.21e-12 65.1
Msa1362910 AT5G03790.2 35.246 122 77 1 59 178 71 192 2.34e-11 60.8

Find 72 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGAAAGCAGCGTTAA+TGG 0.245343 tig0018019:+16461 Msa1362910:CDS
TTCTTGATCTTCTTCTTCTA+TGG 0.256573 tig0018019:+15382 Msa1362910:exon
AAAGAGAAGTTGAGGAGCTT+AGG 0.327770 tig0018019:+20398 Msa1362910:CDS
CAAGAAGATCCTTGATGAAA+AGG 0.362713 tig0018019:-15365 None:intergenic
AGCGACTGTGGCGGTGGTAT+TGG 0.370541 tig0018019:-20521 None:intergenic
AAAGTGAAGAAAACAAATTT+AGG 0.381582 tig0018019:-15331 None:intergenic
GATGAGGGGAGAAAAGAAAT+TGG 0.383567 tig0018019:-15470 None:intergenic
AAGACCCAAACCACCTCTTC+AGG 0.404339 tig0018019:-20351 None:intergenic
GGTGGTGACACGCTCACATC+GGG 0.415895 tig0018019:-20500 None:intergenic
GGTCTTTAACTGAGCAAAAC+CGG 0.425394 tig0018019:+20368 Msa1362910:CDS
TGCCATCCATTCTTCTTCTA+CGG 0.429731 tig0018019:-16429 None:intergenic
TGAAGCTTTCTTCAAGGAGA+TGG 0.431949 tig0018019:-16526 None:intergenic
AAGAGAAGTTGAGGAGCTTA+GGG 0.432553 tig0018019:+20399 Msa1362910:CDS
CAACTTCTCTTTGTAGCCTC+CGG 0.434325 tig0018019:-20387 None:intergenic
ACAGAAGCAGAAAGAGTGTT+TGG 0.439755 tig0018019:+16736 Msa1362910:intron
ATTGGTGAAGAAGCAAAGCC+TGG 0.448686 tig0018019:-15452 None:intergenic
GAATACCTGAAGAGGTGGTT+TGG 0.451281 tig0018019:+20346 Msa1362910:CDS
AGAAAACAAATTTAGGAGAA+AGG 0.458069 tig0018019:-15324 None:intergenic
CTTGATGAAAAGGGAGGAAA+AGG 0.462170 tig0018019:-15355 None:intergenic
ACCTACAAGTTCCTCCAGCT+TGG 0.470781 tig0018019:+15412 Msa1362910:CDS
AAGAAGATCCTTGATGAAAA+GGG 0.473088 tig0018019:-15364 None:intergenic
AACCACACCTCCACTTGCCT+TGG 0.476841 tig0018019:-16779 None:intergenic
GAAGCTTTCTTCAAGGAGAT+GGG 0.480176 tig0018019:-16525 None:intergenic
AATACCTGAAGAGGTGGTTT+GGG 0.488971 tig0018019:+20347 Msa1362910:CDS
TTCGGCAGCGACTGTGGCGG+TGG 0.489852 tig0018019:-20527 None:intergenic
CACATTGATAAGGTTGAAGC+TGG 0.491305 tig0018019:-20475 None:intergenic
TGTCATGCTTGTCACACTCT+AGG 0.496223 tig0018019:-20580 None:intergenic
GTCATGCTTGTCACACTCTA+GGG 0.499070 tig0018019:-20579 None:intergenic
ATTCTTCTTCTACGGTTACT+CGG 0.502354 tig0018019:-16421 None:intergenic
GGAGCTTAGGGCTATGAAGA+TGG 0.505130 tig0018019:+20411 Msa1362910:CDS
TAATTACTGGGTTTAAAGTG+TGG 0.513978 tig0018019:-16556 None:intergenic
GACTGTGGCGGTGGTATTGG+TGG 0.515726 tig0018019:-20518 None:intergenic
TCCAAGCTGGAGGAACTTGT+AGG 0.518571 tig0018019:-15413 None:intergenic
GAGTAACCGTAGAAGAAGAA+TGG 0.519061 tig0018019:+16423 Msa1362910:CDS
GGTTTCAAAACCGTAGGGCC+AGG 0.531848 tig0018019:+16798 Msa1362910:CDS
AGCAAAGCCTGGGATAGATA+TGG 0.534631 tig0018019:-15441 None:intergenic
CAAGTTGAAGCAGACAGAGA+TGG 0.539564 tig0018019:+20318 Msa1362910:CDS
GATAAGGTTGAAGCTGGAAG+AGG 0.548416 tig0018019:-20469 None:intergenic
GAATTGACCATATCTATCCC+AGG 0.565626 tig0018019:+15434 Msa1362910:CDS
GAGCTTAGGGCTATGAAGAT+GGG 0.567814 tig0018019:+20412 Msa1362910:CDS
CACTCGTGCACGATCGAGCG+TGG 0.575990 tig0018019:-20626 None:intergenic
AGAATGGATGGCACTAGAAG+AGG 0.577292 tig0018019:+16439 Msa1362910:CDS
TTAGCCTTTACCTGGCCCTA+CGG 0.577524 tig0018019:-16808 None:intergenic
AGATATGGTCAATTCCAAGC+TGG 0.579606 tig0018019:-15426 None:intergenic
ACACCTCCACTTGCCTTGGT+CGG 0.580254 tig0018019:-16775 None:intergenic
GTGCTACTTACCAGATGATG+AGG 0.582615 tig0018019:-15486 None:intergenic
ACATCGGGGACACATTGATA+AGG 0.583310 tig0018019:-20485 None:intergenic
TGCAGCTTAAGCTCCGACCA+AGG 0.586714 tig0018019:+16762 Msa1362910:CDS
GACCAAGGCAAGTGGAGGTG+TGG 0.601638 tig0018019:+16777 Msa1362910:CDS
AACCGTAGAAGAAGAATGGA+TGG 0.604290 tig0018019:+16427 Msa1362910:CDS
TGGTGGTGACACGCTCACAT+CGG 0.609053 tig0018019:-20501 None:intergenic
TGCTACTTACCAGATGATGA+GGG 0.609343 tig0018019:-15485 None:intergenic
TAAGCTCCGACCAAGGCAAG+TGG 0.615426 tig0018019:+16769 Msa1362910:CDS
AGGTGTGGTTTCAAAACCGT+AGG 0.616349 tig0018019:+16792 Msa1362910:CDS
TTGGTGAAGAAGCAAAGCCT+GGG 0.624929 tig0018019:-15451 None:intergenic
CACTCTAGGGGACAAAATGA+CGG 0.630061 tig0018019:-20566 None:intergenic
CAAGAAACTGCGTCTAACAA+AGG 0.630784 tig0018019:+16496 Msa1362910:CDS
GAGGCTACAAAGAGAAGTTG+AGG 0.631401 tig0018019:+20390 Msa1362910:CDS
TGGAGTGCGAATACCTGAAG+AGG 0.632527 tig0018019:+20338 Msa1362910:CDS
TGAGGAGATAACACAGTAGG+TGG 0.632854 tig0018019:-20436 None:intergenic
AAGATCCTTGATGAAAAGGG+AGG 0.635554 tig0018019:-15361 None:intergenic
TATGGTCAATTCCAAGCTGG+AGG 0.639066 tig0018019:-15423 None:intergenic
CTGTGAGGAGATAACACAGT+AGG 0.640869 tig0018019:-20439 None:intergenic
GTTAGACGCAGTTTCTTGCG+AGG 0.647544 tig0018019:-16491 None:intergenic
GGTGTGGTTTCAAAACCGTA+GGG 0.647806 tig0018019:+16793 Msa1362910:CDS
GCTCCGACCAAGGCAAGTGG+AGG 0.651935 tig0018019:+16772 Msa1362910:CDS
TCATGCTTGTCACACTCTAG+GGG 0.663913 tig0018019:-20578 None:intergenic
AGTGCGAATACCTGAAGAGG+TGG 0.667742 tig0018019:+20341 Msa1362910:CDS
GGAAGAGGCTCAGAACTGTG+AGG 0.688248 tig0018019:-20454 None:intergenic
GCTACTTACCAGATGATGAG+GGG 0.700104 tig0018019:-15484 None:intergenic
CTTTAACTGAGCAAAACCGG+AGG 0.749476 tig0018019:+20371 Msa1362910:CDS
GTGGTGACACGCTCACATCG+GGG 0.751626 tig0018019:-20499 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAATAATAAATTTAA+GGG - tig0018019:15756-15775 None:intergenic 0.0%
!! TATAAAAAATAATAAATTTA+AGG - tig0018019:15757-15776 None:intergenic 0.0%
!! AATAAAATTAAAACAATGAT+CGG + tig0018019:15692-15711 Msa1362910:intron 10.0%
!! AACAAAAAGTTAATATTAAA+CGG + tig0018019:15776-15795 Msa1362910:intron 10.0%
!! AAAGTAAAAAATTGTATATT+AGG - tig0018019:15903-15922 None:intergenic 10.0%
!! TATATTATATATCTAACTTT+AGG - tig0018019:16324-16343 None:intergenic 10.0%
!! AAAAATTCATAATTCTTTAT+AGG - tig0018019:16360-16379 None:intergenic 10.0%
!! AATTATATGCATATTAATTA+AGG - tig0018019:16705-16724 None:intergenic 10.0%
!! TTAATTAATATGCATATAAT+TGG + tig0018019:16704-16723 Msa1362910:intron 10.0%
!! ATTAATAATGATAACATTTA+AGG + tig0018019:18354-18373 Msa1362910:intron 10.0%
!!! TTCATTTATTTTACCATTAT+TGG + tig0018019:15632-15651 Msa1362910:intron 15.0%
!! TTAAAAAATGAAACCAATAA+TGG - tig0018019:15648-15667 None:intergenic 15.0%
!! TGAAAAAATGATATATTTGT+CGG + tig0018019:16220-16239 Msa1362910:intron 15.0%
!!! AAAGAATTATGAATTTTTGT+TGG + tig0018019:16362-16381 Msa1362910:intron 15.0%
!!! AAGAATTATGAATTTTTGTT+GGG + tig0018019:16363-16382 Msa1362910:intron 15.0%
!! AAGAAAATATGAAGAAATTA+AGG - tig0018019:16623-16642 None:intergenic 15.0%
!!! TTTCATATATAGTCTTAATT+AGG - tig0018019:16943-16962 None:intergenic 15.0%
!! TTGTTTAGTAATAAAATGTT+AGG + tig0018019:17086-17105 Msa1362910:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - tig0018019:17256-17275 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - tig0018019:17257-17276 None:intergenic 15.0%
!!! TTATCGCTTAATTTAATTTT+AGG - tig0018019:17625-17644 None:intergenic 15.0%
!! GAATAATAACAAAGATAATA+TGG - tig0018019:17712-17731 None:intergenic 15.0%
!!! ATAATAATGTTTTTATGAAC+CGG + tig0018019:18258-18277 Msa1362910:intron 15.0%
!!! AATAAATAAGAGTATAATAG+TGG - tig0018019:18511-18530 None:intergenic 15.0%
!! TCAACTAACTATAATTAATA+AGG + tig0018019:18553-18572 Msa1362910:intron 15.0%
!! CAACTAACTATAATTAATAA+GGG + tig0018019:18554-18573 Msa1362910:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - tig0018019:19110-19129 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - tig0018019:19213-19232 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - tig0018019:19237-19256 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + tig0018019:19236-19255 Msa1362910:intron 15.0%
!!! TACAAATAGAAATTTTATCT+TGG - tig0018019:19410-19429 None:intergenic 15.0%
!! TATTTAACCTATTAATGTAA+GGG - tig0018019:19475-19494 None:intergenic 15.0%
!! ATATTTAACCTATTAATGTA+AGG - tig0018019:19476-19495 None:intergenic 15.0%
!! GTAATATAGTATTAATTGAA+GGG - tig0018019:19917-19936 None:intergenic 15.0%
!! TGTAATATAGTATTAATTGA+AGG - tig0018019:19918-19937 None:intergenic 15.0%
!! TTAAAGAAAGAATAATACTT+TGG - tig0018019:19947-19966 None:intergenic 15.0%
!!! TAAACAAATTTTGACTTTTT+AGG - tig0018019:20116-20135 None:intergenic 15.0%
!! AAAGTGAAGAAAACAAATTT+AGG - tig0018019:15334-15353 None:intergenic 20.0%
!! GAAGAAAAAAATAAGTATGT+GGG - tig0018019:15815-15834 None:intergenic 20.0%
!! AGAAGAAAAAAATAAGTATG+TGG - tig0018019:15816-15835 None:intergenic 20.0%
!!! TTATTTTTTTCTTCTTCTTG+AGG + tig0018019:15821-15840 Msa1362910:intron 20.0%
!!! ATTTTACCTATATTTGCTTT+AGG - tig0018019:15872-15891 None:intergenic 20.0%
!! TACAATGACTGAAAAAAATA+AGG - tig0018019:15930-15949 None:intergenic 20.0%
!!! TTGATCTTTATTGTTTCTTT+AGG + tig0018019:15969-15988 Msa1362910:intron 20.0%
!! GAAAAAATGATATATTTGTC+GGG + tig0018019:16221-16240 Msa1362910:intron 20.0%
!!! AAAAATTTTTAGGTACTAGT+TGG - tig0018019:16284-16303 None:intergenic 20.0%
!!! ACCTAAAAATTTTTTTTGAG+AGG + tig0018019:16290-16309 Msa1362910:intron 20.0%
!!! TCCTCTCAAAAAAAATTTTT+AGG - tig0018019:16294-16313 None:intergenic 20.0%
!!! TCTTTTCAATTCTTTTTCAT+CGG - tig0018019:17119-17138 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - tig0018019:17187-17206 None:intergenic 20.0%
!!! AGACACTTTTTTTTAGAAAA+TGG - tig0018019:17188-17207 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - tig0018019:17297-17316 None:intergenic 20.0%
!!! AAGAAAAGTGTATAAATGAA+GGG - tig0018019:17321-17340 None:intergenic 20.0%
!!! TAAGAAAAGTGTATAAATGA+AGG - tig0018019:17322-17341 None:intergenic 20.0%
!!! TAATAATGTTTTTATGAACC+GGG + tig0018019:18259-18278 Msa1362910:intron 20.0%
!! ATTAATTATAGTTAGTTGAG+TGG - tig0018019:18552-18571 None:intergenic 20.0%
!! CTTATAATAAAAGCAATGAT+AGG - tig0018019:18984-19003 None:intergenic 20.0%
!!! TTGCTTTTATTATAAGACAA+AGG + tig0018019:18988-19007 Msa1362910:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - tig0018019:19150-19169 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + tig0018019:19227-19246 Msa1362910:intron 20.0%
!!! ATTTTTTAACCATTAACTTG+AGG + tig0018019:19433-19452 Msa1362910:intron 20.0%
!! TTAATAAAACTCCATAAACA+CGG - tig0018019:19619-19638 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - tig0018019:19150-19169 None:intergenic 20.0%
!! AAATTATCATAATCAACTGT+TGG - tig0018019:19981-20000 None:intergenic 20.0%
!! AACAGTTGATTATGATAATT+TGG + tig0018019:19980-19999 Msa1362910:intron 20.0%
!!! AATTTGTTTATAATAGTGAC+CGG + tig0018019:20126-20145 Msa1362910:intron 20.0%
!!! CATTGATTAAAATGATGATA+TGG - tig0018019:20262-20281 None:intergenic 20.0%
!!! TGTACGTTGAATTAATATTT+TGG + tig0018019:20282-20301 Msa1362910:intron 20.0%
! AGAAAACAAATTTAGGAGAA+AGG - tig0018019:15327-15346 None:intergenic 25.0%
! ATAAAAAAACACAACTGTAG+TGG - tig0018019:15733-15752 None:intergenic 25.0%
! TAATATTAAACGGCCTATAA+AGG + tig0018019:15786-15805 Msa1362910:intron 25.0%
! AATATTAAACGGCCTATAAA+GGG + tig0018019:15787-15806 Msa1362910:intron 25.0%
! TAACTTCCTAAAGCAAATAT+AGG + tig0018019:15863-15882 Msa1362910:intron 25.0%
!! ATGAATTTTTGTTGGGAAAT+TGG + tig0018019:16370-16389 Msa1362910:intron 25.0%
!! TGAATTTTTGTTGGGAAATT+GGG + tig0018019:16371-16390 Msa1362910:intron 25.0%
!!! ATTTTGGAGGTATAATTACT+GGG - tig0018019:16571-16590 None:intergenic 25.0%
!! TCTTGGTAAAAGAAAGATTT+TGG - tig0018019:16587-16606 None:intergenic 25.0%
! GAAATTAAGGTCATGTAAAT+GGG - tig0018019:16610-16629 None:intergenic 25.0%
! AGAAATTAAGGTCATGTAAA+TGG - tig0018019:16611-16630 None:intergenic 25.0%
! ACAATTAGCTCACTTAATTA+AGG + tig0018019:16968-16987 Msa1362910:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG - tig0018019:17298-17317 None:intergenic 25.0%
!! AGAAAAGTGTATAAATGAAG+GGG - tig0018019:17320-17339 None:intergenic 25.0%
!! AGTAAGTTGTATGATTTTGA+TGG + tig0018019:17391-17410 Msa1362910:intron 25.0%
! GTTGACATTCTATAACATAA+AGG + tig0018019:17560-17579 Msa1362910:intron 25.0%
!!! ATCTTTGTTATTATTCTCCT+AGG + tig0018019:17716-17735 Msa1362910:intron 25.0%
!!! TCTTTGTTATTATTCTCCTA+GGG + tig0018019:17717-17736 Msa1362910:intron 25.0%
!!! AACTTGATTTTGCGTTTTTT+TGG - tig0018019:17895-17914 None:intergenic 25.0%
! GTTCTTGAAAATTGTTTGAT+TGG + tig0018019:18098-18117 Msa1362910:intron 25.0%
! CATTCGTTCTTGAAAATATT+TGG - tig0018019:18153-18172 None:intergenic 25.0%
!!! ATGAGTCAATTTTTGAAGTT+AGG + tig0018019:18170-18189 Msa1362910:intron 25.0%
! TAAAATTACGAATATGAACC+CGG - tig0018019:18280-18299 None:intergenic 25.0%
! ATAACATTTAAGGAGTTGAA+TGG + tig0018019:18364-18383 Msa1362910:intron 25.0%
! ACTTTAAACGACTATTATTG+TGG + tig0018019:18649-18668 Msa1362910:intron 25.0%
! ACTTTAAACGACTATTATTG+TGG + tig0018019:18649-18668 Msa1362910:intron 25.0%
! AAGACAAAGGAATTACATTA+AGG + tig0018019:19001-19020 Msa1362910:intron 25.0%
! AATGATTAAGAGAAAGAGAA+TGG - tig0018019:19270-19289 None:intergenic 25.0%
!! TTGAGTTGTCTACTTTAATT+TGG - tig0018019:19579-19598 None:intergenic 25.0%
! CATGATGATTATAAATGCAT+GGG - tig0018019:19726-19745 None:intergenic 25.0%
! TCATGATGATTATAAATGCA+TGG - tig0018019:19727-19746 None:intergenic 25.0%
!!! GTGTAAGTAATCACTTTTTA+TGG - tig0018019:19777-19796 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - tig0018019:20023-20042 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + tig0018019:20058-20077 Msa1362910:intron 25.0%
! CATTCAATAAATGATGTATG+TGG - tig0018019:20058-20077 None:intergenic 25.0%
AAGAAGATCCTTGATGAAAA+GGG - tig0018019:15367-15386 None:intergenic 30.0%
TTCTTGATCTTCTTCTTCTA+TGG + tig0018019:15382-15401 Msa1362910:exon 30.0%
ATACTAGACAAAGATGCAAA+AGG - tig0018019:15526-15545 None:intergenic 30.0%
CGTGCAAAATTAATTCATGT+AGG - tig0018019:16118-16137 None:intergenic 30.0%
!!! TTTTTCTGAAGCTTTCTTCA+AGG - tig0018019:16535-16554 None:intergenic 30.0%
! TAATTACTGGGTTTAAAGTG+TGG - tig0018019:16559-16578 None:intergenic 30.0%
!! GATTTTGGAGGTATAATTAC+TGG - tig0018019:16572-16591 None:intergenic 30.0%
! TGGTAAAAGAAAGATTTTGG+AGG - tig0018019:16584-16603 None:intergenic 30.0%
TAGAAATATAGCATCTCTCA+TGG - tig0018019:16674-16693 None:intergenic 30.0%
! AGTTGGAAGCTTTTATATAG+AGG - tig0018019:16835-16854 None:intergenic 30.0%
! ATGGCTATGTTTTCTTAGTT+TGG + tig0018019:17817-17836 Msa1362910:intron 30.0%
! AGGTTTATGTTAGGTTTTCA+TGG + tig0018019:17865-17884 Msa1362910:intron 30.0%
GCTAAGTTTCAAAATCATCA+TGG + tig0018019:17999-18018 Msa1362910:intron 30.0%
! ATCATGGATTTGTTTGTTGA+AGG + tig0018019:18015-18034 Msa1362910:intron 30.0%
!!! TCAATTTTTGAAGTTAGGCA+AGG + tig0018019:18175-18194 Msa1362910:intron 30.0%
!!! CAATTTTTGAAGTTAGGCAA+GGG + tig0018019:18176-18195 Msa1362910:intron 30.0%
!! AACTGATTTTGAGCTAAAGA+AGG + tig0018019:18390-18409 Msa1362910:intron 30.0%
GACGATTATTATGAGATAGA+GGG - tig0018019:18439-18458 None:intergenic 30.0%
AGACGATTATTATGAGATAG+AGG - tig0018019:18440-18459 None:intergenic 30.0%
TAAATATTGCATTGCTAGAC+AGG - tig0018019:18477-18496 None:intergenic 30.0%
CAAGGATGGTACAAAAAAAA+AGG - tig0018019:18694-18713 None:intergenic 30.0%
!! TTTTTATGTGTGAAAGCACA+AGG + tig0018019:18933-18952 Msa1362910:intron 30.0%
AGGAATTACATTAAGGAGAA+TGG + tig0018019:19008-19027 Msa1362910:intron 30.0%
ATCTTTAATCATTGCCATTG+GGG - tig0018019:19043-19062 None:intergenic 30.0%
GATCTTTAATCATTGCCATT+GGG - tig0018019:19044-19063 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - tig0018019:19318-19337 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+TGG + tig0018019:19319-19338 Msa1362910:intron 30.0%
TTTCTCATTAAACATACCGT+AGG + tig0018019:19520-19539 Msa1362910:intron 30.0%
AAGGTGCACTCAATAATTAT+TGG - tig0018019:19674-19693 None:intergenic 30.0%
ATGATTATAAATGCATGGGT+TGG - tig0018019:19722-19741 None:intergenic 30.0%
! GAAACAGATGGAGTATTATT+GGG - tig0018019:19801-19820 None:intergenic 30.0%
! TGAAACAGATGGAGTATTAT+TGG - tig0018019:19802-19821 None:intergenic 30.0%
!!! GACACTTATTTTGAAACAGA+TGG - tig0018019:19813-19832 None:intergenic 30.0%
!! TTCAAAATGAGTGTTGCTTT+AGG - tig0018019:20204-20223 None:intergenic 30.0%
!!! AACACTCATTTTGAAACGAA+TGG + tig0018019:20209-20228 Msa1362910:intron 30.0%
!! TTAATATTTTGGACACATGC+AGG + tig0018019:20293-20312 Msa1362910:intron 30.0%
! GGCATCAATGACTAATTTTT+CGG - tig0018019:20548-20567 None:intergenic 30.0%
CAAGAAGATCCTTGATGAAA+AGG - tig0018019:15368-15387 None:intergenic 35.0%
AAGACACAAACATGAAGAGA+GGG - tig0018019:15585-15604 None:intergenic 35.0%
AAAGACACAAACATGAAGAG+AGG - tig0018019:15586-15605 None:intergenic 35.0%
ATTCTTCTTCTACGGTTACT+CGG - tig0018019:16424-16443 None:intergenic 35.0%
ACACAAATTGAAGTCGATTG+AGG - tig0018019:16874-16893 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - tig0018019:17174-17193 None:intergenic 35.0%
TGTATAAATGAAGGGGAAAG+TGG - tig0018019:17313-17332 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + tig0018019:17343-17362 Msa1362910:intron 35.0%
CTGGTATAATTGACCTACTT+TGG - tig0018019:17359-17378 None:intergenic 35.0%
CAAAGTAGGTCAATTATACC+AGG + tig0018019:17357-17376 Msa1362910:intron 35.0%
ACAAAGATAATATGGCGAAG+AGG - tig0018019:17704-17723 None:intergenic 35.0%
TATTATTCTCCTAGGGTTTG+CGG + tig0018019:17724-17743 Msa1362910:intron 35.0%
!! TTGCGGAGTGTTATCTATTT+TGG + tig0018019:17741-17760 Msa1362910:intron 35.0%
!! TGCGGAGTGTTATCTATTTT+GGG + tig0018019:17742-17761 Msa1362910:intron 35.0%
ACATAAACCTTGCCATATGT+AGG - tig0018019:17855-17874 None:intergenic 35.0%
CATATGGCAAGGTTTATGTT+AGG + tig0018019:17856-17875 Msa1362910:intron 35.0%
TTTCAAGAACATGAACAGCT+AGG - tig0018019:18088-18107 None:intergenic 35.0%
! TTTGGCTCGAATATGTTTGT+CGG - tig0018019:18135-18154 None:intergenic 35.0%
ATGGGAATGTTCTCTTTGAT+AGG + tig0018019:18209-18228 Msa1362910:intron 35.0%
TGCAAGGATGGTACAATAAA+AGG - tig0018019:18833-18852 None:intergenic 35.0%
GGATCTTTAATCATTGCCAT+TGG - tig0018019:19045-19064 None:intergenic 35.0%
!! AACAGATGGAGTACTTGTTT+TGG - tig0018019:19066-19085 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+TGG - tig0018019:19080-19099 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - tig0018019:19184-19203 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - tig0018019:19188-19207 None:intergenic 35.0%
!!! GACACTCATTTTGAAATGGA+GGG + tig0018019:19323-19342 Msa1362910:intron 35.0%
AAACAGTGTCCTCAAGTTAA+TGG - tig0018019:19445-19464 None:intergenic 35.0%
AGCAAGACCCTTACATTAAT+AGG + tig0018019:19465-19484 Msa1362910:intron 35.0%
GCACTCAATAATTATTGGAG+AGG - tig0018019:19669-19688 None:intergenic 35.0%
ATTGCATTGGAAACTGAAAG+TGG - tig0018019:19137-19156 None:intergenic 35.0%
TTGTTTATAATAGTGACCGG+AGG + tig0018019:20129-20148 Msa1362910:intron 35.0%
TGTTTATAATAGTGACCGGA+GGG + tig0018019:20130-20149 Msa1362910:intron 35.0%
AGGCAATTGCACATAGATTA+AGG - tig0018019:20184-20203 None:intergenic 35.0%
CTTGATGAAAAGGGAGGAAA+AGG - tig0018019:15358-15377 None:intergenic 40.0%
! CTTTTCCTCCCTTTTCATCA+AGG + tig0018019:15356-15375 Msa1362910:five_prime_UTR 40.0%
AAGATCCTTGATGAAAAGGG+AGG - tig0018019:15364-15383 None:intergenic 40.0%
AGATATGGTCAATTCCAAGC+TGG - tig0018019:15429-15448 None:intergenic 40.0%
GAATTGACCATATCTATCCC+AGG + tig0018019:15434-15453 Msa1362910:CDS 40.0%
GATGAGGGGAGAAAAGAAAT+TGG - tig0018019:15473-15492 None:intergenic 40.0%
! TGCTACTTACCAGATGATGA+GGG - tig0018019:15488-15507 None:intergenic 40.0%
AGTATGTGGGAACCCTTTAT+AGG - tig0018019:15802-15821 None:intergenic 40.0%
! GGGTGTTACAGTGAAAAAGT+TGG + tig0018019:16391-16410 Msa1362910:intron 40.0%
GAGTAACCGTAGAAGAAGAA+TGG + tig0018019:16423-16442 Msa1362910:CDS 40.0%
AACCGTAGAAGAAGAATGGA+TGG + tig0018019:16427-16446 Msa1362910:CDS 40.0%
TGCCATCCATTCTTCTTCTA+CGG - tig0018019:16432-16451 None:intergenic 40.0%
GAAGAAGAAAGCAGCGTTAA+TGG + tig0018019:16461-16480 Msa1362910:CDS 40.0%
CAAGAAACTGCGTCTAACAA+AGG + tig0018019:16496-16515 Msa1362910:CDS 40.0%
GAAGCTTTCTTCAAGGAGAT+GGG - tig0018019:16528-16547 None:intergenic 40.0%
TGAAGCTTTCTTCAAGGAGA+TGG - tig0018019:16529-16548 None:intergenic 40.0%
AAGGTCATGTAAATGGGTCT+TGG - tig0018019:16604-16623 None:intergenic 40.0%
TATAGCATCTCTCATGGACA+TGG - tig0018019:16668-16687 None:intergenic 40.0%
!! ACAGAAGCAGAAAGAGTGTT+TGG + tig0018019:16736-16755 Msa1362910:intron 40.0%
!! ATAGAGGATTAGCCTTTACC+TGG - tig0018019:16819-16838 None:intergenic 40.0%
GATCAGTCATGATGAGAAGT+TGG - tig0018019:16852-16871 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG - tig0018019:17173-17192 None:intergenic 40.0%
GTAGGTCAATTATACCAGGA+CGG + tig0018019:17361-17380 Msa1362910:intron 40.0%
! TCAAGTTGCAAACCCTAATC+TGG + tig0018019:17908-17927 Msa1362910:intron 40.0%
! TCAGAAAGTTTTGCAAAGCG+TGG - tig0018019:17962-17981 None:intergenic 40.0%
TGAAGGTTTGACCATTGATG+AGG + tig0018019:18032-18051 Msa1362910:intron 40.0%
GTTATCTGATTCCAAGTCGA+TGG - tig0018019:18066-18085 None:intergenic 40.0%
GAGAGAGTCAGAAACAAAGT+TGG + tig0018019:18741-18760 Msa1362910:intron 40.0%
CATTAAGGAGAATGGTAACC+AGG + tig0018019:19016-19035 Msa1362910:intron 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - tig0018019:19185-19204 None:intergenic 40.0%
!!! CGACACTCATTTTGAAATGG+AGG + tig0018019:19322-19341 Msa1362910:intron 40.0%
TTTATCCCACAGCAATCCTA+CGG - tig0018019:19539-19558 None:intergenic 40.0%
! GTCTAAAGCATGAAATCGAG+TGG - tig0018019:19700-19719 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG - tig0018019:20019-20038 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - tig0018019:20020-20039 None:intergenic 40.0%
AATACCTGAAGAGGTGGTTT+GGG + tig0018019:20347-20366 Msa1362910:CDS 40.0%
GGTCTTTAACTGAGCAAAAC+CGG + tig0018019:20368-20387 Msa1362910:CDS 40.0%
AAAGAGAAGTTGAGGAGCTT+AGG + tig0018019:20398-20417 Msa1362910:CDS 40.0%
AAGAGAAGTTGAGGAGCTTA+GGG + tig0018019:20399-20418 Msa1362910:CDS 40.0%
CACATTGATAAGGTTGAAGC+TGG - tig0018019:20478-20497 None:intergenic 40.0%
TATGGTCAATTCCAAGCTGG+AGG - tig0018019:15426-15445 None:intergenic 45.0%
AGCAAAGCCTGGGATAGATA+TGG - tig0018019:15444-15463 None:intergenic 45.0%
TTGGTGAAGAAGCAAAGCCT+GGG - tig0018019:15454-15473 None:intergenic 45.0%
ATTGGTGAAGAAGCAAAGCC+TGG - tig0018019:15455-15474 None:intergenic 45.0%
! TCTTTTCTCCCCTCATCATC+TGG + tig0018019:15476-15495 Msa1362910:CDS 45.0%
GCTACTTACCAGATGATGAG+GGG - tig0018019:15487-15506 None:intergenic 45.0%
!! GTGCTACTTACCAGATGATG+AGG - tig0018019:15489-15508 None:intergenic 45.0%
AGAATGGATGGCACTAGAAG+AGG + tig0018019:16439-16458 Msa1362910:CDS 45.0%
AGGTGTGGTTTCAAAACCGT+AGG + tig0018019:16792-16811 Msa1362910:CDS 45.0%
GGTGTGGTTTCAAAACCGTA+GGG + tig0018019:16793-16812 Msa1362910:CDS 45.0%
TTTGGGTCGTCGTGTTCAAT+TGG + tig0018019:17759-17778 Msa1362910:intron 45.0%
TTGGGTCGTCGTGTTCAATT+GGG + tig0018019:17760-17779 Msa1362910:intron 45.0%
AAGACACACGCTACTCACAA+GGG - tig0018019:17795-17814 None:intergenic 45.0%
CGTATGCATCAGCCTACATA+TGG + tig0018019:17840-17859 Msa1362910:intron 45.0%
!! GTGGTGCTTTGGGAATGATT+CGG - tig0018019:17943-17962 None:intergenic 45.0%
TTTGCAAAGCGTGGTGCTTT+GGG - tig0018019:17953-17972 None:intergenic 45.0%
! TTTTGCAAAGCGTGGTGCTT+TGG - tig0018019:17954-17973 None:intergenic 45.0%
AGGTTTGACCATTGATGAGG+AGG + tig0018019:18035-18054 Msa1362910:intron 45.0%
TGGTCAAACCTCCTCATCAA+TGG - tig0018019:18046-18065 None:intergenic 45.0%
AGGCAAGGGTTTGACATTCA+TGG + tig0018019:18190-18209 Msa1362910:intron 45.0%
GGCAAGGGTTTGACATTCAT+GGG + tig0018019:18191-18210 Msa1362910:intron 45.0%
TCTTCTCCCTAGTGTCACAT+GGG - tig0018019:18723-18742 None:intergenic 45.0%
GAGAGAGTCAGAGACAAAGT+TGG + tig0018019:18878-18897 Msa1362910:intron 45.0%
!! AGACAAAGTTGGTGAGTGTG+TGG + tig0018019:18889-18908 Msa1362910:intron 45.0%
!! GACAAAGTTGGTGAGTGTGT+GGG + tig0018019:18890-18909 Msa1362910:intron 45.0%
!! ACAAAGTTGGTGAGTGTGTG+GGG + tig0018019:18754-18773 Msa1362910:intron 45.0%
AAAAATGACACGTGACGACG+TGG - tig0018019:18918-18937 None:intergenic 45.0%
CAAGGAATGTATGCCACATG+AGG + tig0018019:18951-18970 Msa1362910:intron 45.0%
AACATACCGTAGGATTGCTG+TGG + tig0018019:19530-19549 Msa1362910:intron 45.0%
ACATACCGTAGGATTGCTGT+GGG + tig0018019:19531-19550 Msa1362910:intron 45.0%
AAACTCCATAAACACGGACG+CGG - tig0018019:19613-19632 None:intergenic 45.0%
GCATGAAATCGAGTGGTCAA+AGG - tig0018019:19693-19712 None:intergenic 45.0%
GGTAAAATTGCTACTCCCTC+CGG + tig0018019:20001-20020 Msa1362910:intron 45.0%
AGTCAAATGCATACTCCCTC+CGG - tig0018019:20148-20167 None:intergenic 45.0%
! CAAGTTGAAGCAGACAGAGA+TGG + tig0018019:20318-20337 Msa1362910:CDS 45.0%
GAATACCTGAAGAGGTGGTT+TGG + tig0018019:20346-20365 Msa1362910:CDS 45.0%
CTTTAACTGAGCAAAACCGG+AGG + tig0018019:20371-20390 Msa1362910:CDS 45.0%
CAACTTCTCTTTGTAGCCTC+CGG - tig0018019:20390-20409 None:intergenic 45.0%
GAGGCTACAAAGAGAAGTTG+AGG + tig0018019:20390-20409 Msa1362910:CDS 45.0%
GAGCTTAGGGCTATGAAGAT+GGG + tig0018019:20412-20431 Msa1362910:CDS 45.0%
TGAGGAGATAACACAGTAGG+TGG - tig0018019:20439-20458 None:intergenic 45.0%
CTGTGAGGAGATAACACAGT+AGG - tig0018019:20442-20461 None:intergenic 45.0%
GATAAGGTTGAAGCTGGAAG+AGG - tig0018019:20472-20491 None:intergenic 45.0%
ACATCGGGGACACATTGATA+AGG - tig0018019:20488-20507 None:intergenic 45.0%
!! TAATTTTTCGGCAGCGACTG+TGG - tig0018019:20536-20555 None:intergenic 45.0%
! CACTCTAGGGGACAAAATGA+CGG - tig0018019:20569-20588 None:intergenic 45.0%
TCATGCTTGTCACACTCTAG+GGG - tig0018019:20581-20600 None:intergenic 45.0%
GTCATGCTTGTCACACTCTA+GGG - tig0018019:20582-20601 None:intergenic 45.0%
TGTCATGCTTGTCACACTCT+AGG - tig0018019:20583-20602 None:intergenic 45.0%
!!! AAATAATAATTCAAAATTTT+GGG - tig0018019:17516-17535 None:intergenic 5.0%
!!! AAAATAATAATTCAAAATTT+TGG - tig0018019:17517-17536 None:intergenic 5.0%
ACCTACAAGTTCCTCCAGCT+TGG + tig0018019:15412-15431 Msa1362910:CDS 50.0%
TCCAAGCTGGAGGAACTTGT+AGG - tig0018019:15416-15435 None:intergenic 50.0%
GTTAGACGCAGTTTCTTGCG+AGG - tig0018019:16494-16513 None:intergenic 50.0%
AAAACCGTAGGGCCAGGTAA+AGG + tig0018019:16804-16823 Msa1362910:intron 50.0%
! TTAGCCTTTACCTGGCCCTA+CGG - tig0018019:16811-16830 None:intergenic 50.0%
AAAACATACTCCCTCCGTCC+CGG + tig0018019:17152-17171 Msa1362910:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - tig0018019:17169-17188 None:intergenic 50.0%
GGTCAATTATACCAGGACGG+AGG + tig0018019:17364-17383 Msa1362910:intron 50.0%
ACTTACTACTACCTCCGTCC+TGG - tig0018019:17378-17397 None:intergenic 50.0%
GATAACACTCCGCAAACCCT+AGG - tig0018019:17736-17755 None:intergenic 50.0%
CAAGACACACGCTACTCACA+AGG - tig0018019:17796-17815 None:intergenic 50.0%
TGAGTAGCGTGTGTCTTGCA+TGG + tig0018019:17798-17817 Msa1362910:intron 50.0%
GCATCAGCCTACATATGGCA+AGG + tig0018019:17845-17864 Msa1362910:intron 50.0%
CGGAATGCGCATCCAGATTA+GGG - tig0018019:17923-17942 None:intergenic 50.0%
TCGGAATGCGCATCCAGATT+AGG - tig0018019:17924-17943 None:intergenic 50.0%
! AGGAGGTTTGACCATCGACT+TGG + tig0018019:18052-18071 Msa1362910:intron 50.0%
TACACCCCCATGTGACACTA+GGG + tig0018019:18714-18733 Msa1362910:intron 50.0%
TTCTCCCTAGTGTCACATGG+GGG - tig0018019:18721-18740 None:intergenic 50.0%
CTTCTCCCTAGTGTCACATG+GGG - tig0018019:18722-18741 None:intergenic 50.0%
CTCTTCTCCCTAGTGTCACA+TGG - tig0018019:18724-18743 None:intergenic 50.0%
TCTTCTCCCTAGTGCCACAT+GGG - tig0018019:18860-18879 None:intergenic 50.0%
GGAATGTATGCCACATGAGG+TGG + tig0018019:18954-18973 Msa1362910:intron 50.0%
! GATAGGTTGACCACCTCATG+TGG - tig0018019:18967-18986 None:intergenic 50.0%
AATGGTAACCAGGACCCCAA+TGG + tig0018019:19026-19045 Msa1362910:intron 50.0%
AATCATTGCCATTGGGGTCC+TGG - tig0018019:19037-19056 None:intergenic 50.0%
TCAGTGTAGTGTAGCACACG+AGG - tig0018019:19643-19662 None:intergenic 50.0%
TGGAGTGCGAATACCTGAAG+AGG + tig0018019:20338-20357 Msa1362910:CDS 50.0%
AGTGCGAATACCTGAAGAGG+TGG + tig0018019:20341-20360 Msa1362910:CDS 50.0%
AAGACCCAAACCACCTCTTC+AGG - tig0018019:20354-20373 None:intergenic 50.0%
GGAGCTTAGGGCTATGAAGA+TGG + tig0018019:20411-20430 Msa1362910:CDS 50.0%
TGCAGCTTAAGCTCCGACCA+AGG + tig0018019:16762-16781 Msa1362910:CDS 55.0%
TAAGCTCCGACCAAGGCAAG+TGG + tig0018019:16769-16788 Msa1362910:CDS 55.0%
ACACCTCCACTTGCCTTGGT+CGG - tig0018019:16778-16797 None:intergenic 55.0%
AACCACACCTCCACTTGCCT+TGG - tig0018019:16782-16801 None:intergenic 55.0%
GGTTTCAAAACCGTAGGGCC+AGG + tig0018019:16798-16817 Msa1362910:CDS 55.0%
GTCAGTTATTCCGGGACGGA+GGG - tig0018019:17165-17184 None:intergenic 55.0%
! CACATGGGGGTGTACAAGGA+TGG - tig0018019:18708-18727 None:intergenic 55.0%
! GTGTCACATGGGGGTGTACA+AGG - tig0018019:18712-18731 None:intergenic 55.0%
GTACACCCCCATGTGACACT+AGG + tig0018019:18713-18732 Msa1362910:intron 55.0%
TTCTCCCTAGTGCCACATGG+GGG - tig0018019:18858-18877 None:intergenic 55.0%
CTTCTCCCTAGTGCCACATG+GGG - tig0018019:18859-18878 None:intergenic 55.0%
CTCTTCTCCCTAGTGCCACA+TGG - tig0018019:18861-18880 None:intergenic 55.0%
GGAAGAGGCTCAGAACTGTG+AGG - tig0018019:20457-20476 None:intergenic 55.0%
! TGGTGGTGACACGCTCACAT+CGG - tig0018019:20504-20523 None:intergenic 55.0%
!! TTTTTCGGCAGCGACTGTGG+CGG - tig0018019:20533-20552 None:intergenic 55.0%
GACCAAGGCAAGTGGAGGTG+TGG + tig0018019:16777-16796 Msa1362910:CDS 60.0%
GGTCAGTTATTCCGGGACGG+AGG - tig0018019:17166-17185 None:intergenic 60.0%
! CACATGGGGGTGTGCAAGGA+TGG - tig0018019:18845-18864 None:intergenic 60.0%
CATCCTTGCACACCCCCATG+TGG + tig0018019:18843-18862 Msa1362910:intron 60.0%
CACACCCCCATGTGGCACTA+GGG + tig0018019:18851-18870 Msa1362910:intron 60.0%
! TAAACACGGACGCGGTGCTG+TGG - tig0018019:19605-19624 None:intergenic 60.0%
CAGCACCGCGTCCGTGTTTA+TGG + tig0018019:19605-19624 Msa1362910:intron 60.0%
GTGGTGACACGCTCACATCG+GGG - tig0018019:20502-20521 None:intergenic 60.0%
GGTGGTGACACGCTCACATC+GGG - tig0018019:20503-20522 None:intergenic 60.0%
! GACTGTGGCGGTGGTATTGG+TGG - tig0018019:20521-20540 None:intergenic 60.0%
AGCGACTGTGGCGGTGGTAT+TGG - tig0018019:20524-20543 None:intergenic 60.0%
GCTCCGACCAAGGCAAGTGG+AGG + tig0018019:16772-16791 Msa1362910:CDS 65.0%
! GTGCCACATGGGGGTGTGCA+AGG - tig0018019:18849-18868 None:intergenic 65.0%
GCACACCCCCATGTGGCACT+AGG + tig0018019:18850-18869 Msa1362910:intron 65.0%
CACTCGTGCACGATCGAGCG+TGG - tig0018019:20629-20648 None:intergenic 65.0%
TTCGGCAGCGACTGTGGCGG+TGG - tig0018019:20530-20549 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0018019 gene 15293 20707 15293 ID=Msa1362910;Name=Msa1362910
tig0018019 mRNA 15293 20707 15293 ID=Msa1362910-mRNA-1;Parent=Msa1362910;Name=Msa1362910-mRNA-1;_AED=0.11;_eAED=0.11;_QI=108|1|1|1|1|1|4|116|207
tig0018019 exon 15293 15497 15293 ID=Msa1362910-mRNA-1:exon:13282;Parent=Msa1362910-mRNA-1
tig0018019 exon 16402 16571 16402 ID=Msa1362910-mRNA-1:exon:13283;Parent=Msa1362910-mRNA-1
tig0018019 exon 16740 16819 16740 ID=Msa1362910-mRNA-1:exon:13284;Parent=Msa1362910-mRNA-1
tig0018019 exon 20315 20707 20315 ID=Msa1362910-mRNA-1:exon:13285;Parent=Msa1362910-mRNA-1
tig0018019 five_prime_UTR 15293 15400 15293 ID=Msa1362910-mRNA-1:five_prime_utr;Parent=Msa1362910-mRNA-1
tig0018019 CDS 15401 15497 15401 ID=Msa1362910-mRNA-1:cds;Parent=Msa1362910-mRNA-1
tig0018019 CDS 16402 16571 16402 ID=Msa1362910-mRNA-1:cds;Parent=Msa1362910-mRNA-1
tig0018019 CDS 16740 16819 16740 ID=Msa1362910-mRNA-1:cds;Parent=Msa1362910-mRNA-1
tig0018019 CDS 20315 20591 20315 ID=Msa1362910-mRNA-1:cds;Parent=Msa1362910-mRNA-1
tig0018019 three_prime_UTR 20592 20707 20592 ID=Msa1362910-mRNA-1:three_prime_utr;Parent=Msa1362910-mRNA-1
Gene Sequence

>Msa1362910

ATGGCAGTTTTACCTACAAGTTCCTCCAGCTTGGAATTGACCATATCTATCCCAGGCTTTGCTTCTTCACCAATTTCTTTTCTCCCCTCATCATCTGTGAAAAAGTTGGATGTGAACCGAGTAACCGTAGAAGAAGAATGGATGGCACTAGAAGAGGAAGAAGAAAGCAGCGTTAATGGAGACACTCCTCGCAAGAAACTGCGTCTAACAAAGGAACAGTCCCATCTCCTTGAAGAAAGCTTCAGAAAAAACCACACTTTAAACCCAAAGCAGAAAGAGTGTTTGGCAATGCAGCTTAAGCTCCGACCAAGGCAAGTGGAGGTGTGGTTTCAAAACCGTAGGGCCAGGAGCAAGTTGAAGCAGACAGAGATGGAGTGCGAATACCTGAAGAGGTGGTTTGGGTCTTTAACTGAGCAAAACCGGAGGCTACAAAGAGAAGTTGAGGAGCTTAGGGCTATGAAGATGGGTCCACCTACTGTGTTATCTCCTCACAGTTCTGAGCCTCTTCCAGCTTCAACCTTATCAATGTGTCCCCGATGTGAGCGTGTCACCACCAATACCACCGCCACAGTCGCTGCCGAAAAATTAGTCATTGATGCCGTCATTTTGTCCCCTAGAGTGTGA

Protein sequence

>Msa1362910

MAVLPTSSSSLELTISIPGFASSPISFLPSSSVKKLDVNRVTVEEEWMALEEEEESSVNGDTPRKKLRLTKEQSHLLEESFRKNHTLNPKQKECLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKMGPPTVLSPHSSEPLPASTLSMCPRCERVTTNTTATVAAEKLVIDAVILSPRV*