AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1235050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235050 MtrunA17_Chr8g0336861 93.262 282 19 0 1 282 1 282 0.0 550
Msa1235050 MtrunA17_Chr8g0336781 88.652 282 32 0 1 282 36 317 0.0 530
Msa1235050 MtrunA17_Chr8g0336851 85.461 282 40 1 1 282 1 281 0.0 509
Msa1235050 MtrunA17_Chr8g0348081 86.879 282 36 1 1 282 1 281 0.0 504
Msa1235050 MtrunA17_Chr8g0336761 84.752 282 42 1 1 282 1 281 4.51e-180 501
Msa1235050 MtrunA17_Chr8g0336631 82.332 283 48 2 1 282 1 282 1.65e-175 489
Msa1235050 MtrunA17_Chr8g0336831 85.477 241 35 0 1 241 1 241 7.40e-156 435
Msa1235050 MtrunA17_Chr4g0066121 73.498 283 73 2 1 282 1 282 2.63e-153 433
Msa1235050 MtrunA17_Chr2g0311761 68.382 272 80 4 15 282 20 289 2.22e-134 385
Msa1235050 MtrunA17_Chr2g0311831 68.165 267 80 3 19 282 24 288 2.77e-133 382
Msa1235050 MtrunA17_Chr2g0311921 65.185 270 88 4 17 282 8 275 2.42e-127 367
Msa1235050 MtrunA17_Chr8g0336751 61.429 280 102 4 6 282 38 314 2.95e-124 360
Msa1235050 MtrunA17_Chr8g0336791 86.010 193 27 0 1 193 1 193 1.90e-122 348
Msa1235050 MtrunA17_Chr2g0311861 60.563 284 86 5 2 282 4 264 6.66e-121 350
Msa1235050 MtrunA17_Chr1g0167961 60.595 269 100 5 17 282 24 289 5.13e-114 333
Msa1235050 MtrunA17_Chr1g0167911 59.701 268 103 4 17 282 9 273 1.43e-113 332
Msa1235050 MtrunA17_Chr1g0167951 59.124 274 104 5 14 282 2 272 4.44e-113 330
Msa1235050 MtrunA17_Chr8g0354261 55.882 272 111 4 17 282 22 290 2.23e-108 319
Msa1235050 MtrunA17_Chr8g0354241 54.779 272 114 4 17 282 22 290 2.04e-106 314
Msa1235050 MtrunA17_Chr1g0187821 51.812 276 119 6 16 282 17 287 6.12e-101 300
Msa1235050 MtrunA17_Chr8g0364471 50.000 268 130 4 17 282 22 287 9.42e-101 300
Msa1235050 MtrunA17_Chr7g0235951 50.000 270 131 4 15 282 20 287 9.77e-100 297
Msa1235050 MtrunA17_Chr6g0472861 53.214 280 114 4 15 282 15 289 4.00e-99 296
Msa1235050 MtrunA17_Chr2g0311701 51.292 271 126 4 16 282 21 289 2.29e-98 294
Msa1235050 MtrunA17_Chr1g0187811 50.357 280 122 5 16 282 133 408 3.51e-98 297
Msa1235050 MtrunA17_Chr7g0225881 50.182 275 125 3 15 282 15 284 1.06e-97 292
Msa1235050 MtrunA17_Chr8g0335411 51.071 280 132 4 5 282 11 287 1.23e-96 289
Msa1235050 MtrunA17_Chr7g0247991 51.661 271 123 4 16 282 21 287 2.06e-95 286
Msa1235050 MtrunA17_Chr1g0187831 48.571 280 124 5 16 282 18 290 2.65e-94 284
Msa1235050 MtrunA17_Chr2g0311741 57.205 229 96 2 54 282 21 247 6.45e-94 281
Msa1235050 MtrunA17_Chr2g0311681 48.611 288 137 6 1 282 1 283 1.17e-93 281
Msa1235050 MtrunA17_Chr2g0311711 49.815 271 130 4 16 282 19 287 4.02e-93 280
Msa1235050 MtrunA17_Chr2g0311691 48.611 288 137 6 1 282 1 283 4.48e-92 277
Msa1235050 MtrunA17_Chr4g0011311 44.898 294 155 5 3 291 5 296 5.67e-91 273
Msa1235050 MtrunA17_Chr1g0167931 51.493 268 87 4 17 282 9 235 1.99e-90 271
Msa1235050 MtrunA17_Chr4g0055591 45.965 285 141 4 16 296 13 288 2.94e-90 273
Msa1235050 MtrunA17_Chr7g0236011 49.071 269 133 4 16 282 21 287 3.81e-86 262
Msa1235050 MtrunA17_Chr1g0184241 45.522 268 141 2 17 282 23 287 4.18e-84 257
Msa1235050 MtrunA17_Chr4g0066991 48.913 276 114 6 12 282 14 267 1.50e-82 253
Msa1235050 MtrunA17_Chr8g0362741 44.674 291 139 7 5 290 7 280 3.17e-81 247
Msa1235050 MtrunA17_Chr7g0266651 41.199 267 151 3 19 282 15 278 1.09e-72 228
Msa1235050 MtrunA17_Chr7g0235981 41.418 268 123 5 16 282 7 241 9.75e-68 214
Msa1235050 MtrunA17_Chr1g0161081 41.418 268 148 3 19 282 28 290 1.36e-65 209
Msa1235050 MtrunA17_Chr1g0161041 40.067 297 167 4 4 296 36 325 3.06e-64 207
Msa1235050 MtrunA17_Chr1g0161111 41.045 268 149 3 19 282 87 349 7.45e-64 207
Msa1235050 MtrunA17_Chr8g0336871 92.391 92 7 0 186 277 1 92 1.13e-56 180
Msa1235050 MtrunA17_Chr1g0168001 55.090 167 64 5 17 175 9 172 2.31e-54 174
Msa1235050 MtrunA17_Chr7g0242551 34.247 292 175 8 19 296 6 294 2.09e-52 175
Msa1235050 MtrunA17_Chr3g0128001 37.004 227 134 3 60 283 38 258 1.58e-46 159
Msa1235050 MtrunA17_Chr4g0006371 32.459 305 172 8 19 296 5 302 3.40e-46 159
Msa1235050 MtrunA17_Chr2g0311631 37.638 271 144 9 27 282 21 281 6.43e-46 158
Msa1235050 MtrunA17_Chr8g0375571 32.384 281 171 6 27 296 10 282 3.93e-44 153
Msa1235050 MtrunA17_Chr3g0126741 34.247 292 167 9 3 283 6 283 5.69e-44 153
Msa1235050 MtrunA17_Chr1g0167921 60.909 110 43 0 176 285 50 159 1.06e-43 147
Msa1235050 MtrunA17_Chr8g0364161 44.379 169 87 4 10 173 12 178 4.88e-43 145
Msa1235050 MtrunA17_Chr8g0336801 89.041 73 8 0 210 282 1 73 2.43e-42 143
Msa1235050 MtrunA17_Chr5g0437181 34.818 247 152 5 56 296 45 288 1.42e-40 144
Msa1235050 MtrunA17_Chr3g0113641 31.429 280 182 5 19 289 6 284 1.83e-40 144
Msa1235050 MtrunA17_Chr1g0184151 37.391 230 135 5 57 282 35 259 3.15e-40 143
Msa1235050 MtrunA17_Chr1g0179801 32.482 274 161 8 27 282 26 293 2.12e-39 142
Msa1235050 MtrunA17_Chr8g0371931 35.345 232 141 5 54 279 33 261 5.51e-39 140
Msa1235050 MtrunA17_Chr1g0162351 34.274 248 135 7 60 283 69 312 6.27e-39 140
Msa1235050 MtrunA17_Chr8g0345831 33.043 230 149 2 56 283 38 264 1.15e-38 139
Msa1235050 MtrunA17_Chr5g0421101 33.216 283 162 9 27 296 12 280 2.51e-38 138
Msa1235050 MtrunA17_Chr8g0375671 31.295 278 178 7 27 296 17 289 2.62e-38 138
Msa1235050 MtrunA17_Chr5g0420951 31.186 295 186 7 11 296 1 287 3.09e-38 138
Msa1235050 MtrunA17_Chr1g0162321 33.198 247 139 7 60 283 69 312 4.77e-38 138
Msa1235050 MtrunA17_Chr5g0423201 32.197 264 165 6 27 282 12 269 6.37e-38 137
Msa1235050 MtrunA17_Chr7g0235991 41.259 143 82 2 60 202 21 161 7.37e-38 132
Msa1235050 MtrunA17_Chr8g0364171 48.673 113 58 0 174 286 17 129 9.47e-38 130
Msa1235050 MtrunA17_Chr1g0184161 31.518 257 161 7 34 282 10 259 2.51e-37 135
Msa1235050 MtrunA17_Chr7g0265221 30.282 284 170 8 23 282 21 300 6.69e-37 135
Msa1235050 MtrunA17_Chr8g0371921 34.615 234 140 7 54 279 33 261 6.81e-37 135
Msa1235050 MtrunA17_Chr8g0375601 31.343 268 165 8 28 282 11 272 6.95e-37 135
Msa1235050 MtrunA17_Chr1g0184101 32.900 231 146 5 56 282 34 259 1.48e-36 133
Msa1235050 MtrunA17_Chr5g0420941 32.028 281 168 7 27 296 10 278 1.74e-36 133
Msa1235050 MtrunA17_Chr3g0109041 32.075 265 162 7 28 279 10 269 3.35e-36 132
Msa1235050 MtrunA17_Chr5g0412651 35.065 231 141 5 60 283 38 266 3.48e-36 132
Msa1235050 MtrunA17_Chr1g0184111 31.878 229 150 3 57 282 34 259 3.68e-36 132
Msa1235050 MtrunA17_Chr5g0420901 33.333 267 161 8 27 284 11 269 9.12e-36 131
Msa1235050 MtrunA17_Chr5g0421091 32.975 279 169 10 27 296 10 279 1.09e-35 131
Msa1235050 MtrunA17_Chr5g0423251 32.862 283 163 10 27 296 12 280 1.23e-35 131
Msa1235050 MtrunA17_Chr4g0045431 32.245 245 140 5 60 282 26 266 1.32e-35 131
Msa1235050 MtrunA17_Chr5g0412671 33.043 230 147 5 60 283 38 266 1.34e-35 131
Msa1235050 MtrunA17_Chr4g0045411 30.000 240 149 4 60 283 30 266 1.68e-35 130
Msa1235050 MtrunA17_Chr7g0220001 33.468 248 143 7 46 282 24 260 1.72e-35 130
Msa1235050 MtrunA17_Chr3g0093741 34.962 266 155 7 27 282 17 274 3.18e-35 130
Msa1235050 MtrunA17_Chr1g0184121 31.878 229 150 3 57 282 34 259 3.70e-35 129
Msa1235050 MtrunA17_Chr5g0412681 34.615 234 136 5 57 283 30 253 6.01e-35 129
Msa1235050 MtrunA17_Chr1g0162361 34.025 241 132 7 60 282 27 258 6.16e-35 129
Msa1235050 MtrunA17_Chr5g0421041 29.893 281 172 8 27 296 12 278 7.04e-35 129
Msa1235050 MtrunA17_Chr4g0045441 31.429 245 142 5 60 282 26 266 8.95e-35 129
Msa1235050 MtrunA17_Chr1g0162191 32.599 227 146 4 60 282 47 270 1.41e-34 128
Msa1235050 MtrunA17_Chr6g0455481 33.333 237 142 6 53 282 35 262 1.44e-34 128
Msa1235050 MtrunA17_Chr5g0405411 33.333 234 143 7 54 279 33 261 1.52e-34 128
Msa1235050 MtrunA17_Chr3g0102041 33.476 233 144 6 54 279 33 261 2.47e-34 127
Msa1235050 MtrunA17_Chr5g0421011 30.249 281 173 7 27 296 12 280 2.47e-34 127
Msa1235050 MtrunA17_Chr5g0423221 30.282 284 170 10 27 296 36 305 3.62e-34 127
Msa1235050 MtrunA17_Chr5g0423211 31.541 279 175 7 27 296 12 283 3.82e-34 127
Msa1235050 MtrunA17_Chr5g0426891 28.788 264 175 6 27 282 3 261 7.28e-34 126
Msa1235050 MtrunA17_Chr2g0314381 29.710 276 171 8 33 296 48 312 1.05e-33 126
Msa1235050 MtrunA17_Chr8g0375701 32.986 288 168 10 23 296 11 287 2.17e-33 125
Msa1235050 MtrunA17_Chr4g0045471 30.258 271 161 7 36 282 1 267 3.25e-33 124
Msa1235050 MtrunA17_Chr5g0398291 30.515 272 169 6 28 282 8 276 3.53e-33 124
Msa1235050 MtrunA17_Chr8g0365241 29.153 295 193 7 10 296 5 291 4.18e-33 124
Msa1235050 MtrunA17_Chr7g0220011 34.016 244 116 10 60 282 39 258 4.20e-33 124
Msa1235050 MtrunA17_Chr1g0191201 32.400 250 152 5 47 283 40 285 8.53e-33 124
Msa1235050 MtrunA17_Chr4g0045451 31.020 245 143 5 60 282 26 266 8.80e-33 123
Msa1235050 MtrunA17_Chr5g0420981 29.603 277 182 6 27 296 17 287 1.36e-32 123
Msa1235050 MtrunA17_Chr3g0093761 33.708 267 156 9 27 282 17 273 1.77e-32 122
Msa1235050 MtrunA17_Chr4g0050031 32.609 230 142 6 60 282 62 285 2.13e-32 122
Msa1235050 MtrunA17_Chr5g0423191 30.597 268 156 8 47 296 25 280 2.36e-32 122
Msa1235050 MtrunA17_Chr7g0265351 33.617 235 138 5 55 282 34 257 4.09e-32 121
Msa1235050 MtrunA17_Chr3g0093751 32.331 266 162 7 27 282 17 274 9.12e-32 120
Msa1235050 MtrunA17_Chr7g0239821 31.765 255 158 7 38 283 39 286 9.33e-32 121
Msa1235050 MtrunA17_Chr2g0332191 31.868 273 158 9 36 294 25 283 3.72e-31 119
Msa1235050 MtrunA17_Chr7g0239101 29.811 265 170 7 27 282 19 276 9.31e-31 118
Msa1235050 MtrunA17_Chr2g0314401 31.727 249 145 9 60 296 51 286 1.29e-30 117
Msa1235050 MtrunA17_Chr8g0375681 34.359 195 121 5 95 284 15 207 1.30e-30 116
Msa1235050 MtrunA17_Chr2g0314391 31.048 248 148 7 60 296 70 305 1.98e-30 117
Msa1235050 MtrunA17_Chr2g0311751 45.902 122 64 2 54 175 21 140 3.18e-30 112
Msa1235050 MtrunA17_Chr2g0314371 27.551 294 166 9 33 290 23 305 3.41e-30 116
Msa1235050 MtrunA17_Chr1g0204181 31.621 253 151 4 47 283 45 291 3.97e-30 117
Msa1235050 MtrunA17_Chr7g0239111 29.259 270 165 9 27 282 19 276 5.33e-30 116
Msa1235050 MtrunA17_Chr5g0424201 30.000 230 147 5 60 282 44 266 5.50e-30 115
Msa1235050 MtrunA17_Chr5g0424211 31.466 232 143 6 60 282 42 266 5.50e-30 115
Msa1235050 MtrunA17_Chr7g0232161 29.889 271 162 10 27 282 24 281 1.05e-29 114
Msa1235050 MtrunA17_Chr2g0319491 31.092 238 156 6 60 296 33 263 1.83e-29 114
Msa1235050 MtrunA17_Chr3g0114871 30.213 235 151 5 60 288 42 269 2.87e-29 112
Msa1235050 MtrunA17_Chr6g0474391 31.349 252 153 5 47 283 50 296 3.98e-29 114
Msa1235050 MtrunA17_Chr4g0064781 30.568 229 145 6 60 282 50 270 2.24e-28 111
Msa1235050 MtrunA17_Chr3g0145171 29.386 228 153 5 60 282 52 276 3.22e-28 111
Msa1235050 MtrunA17_Chr3g0105281 29.150 247 150 8 57 293 31 262 4.14e-28 110
Msa1235050 MtrunA17_Chr3g0125201 30.043 233 143 9 59 282 2 223 5.20e-28 110
Msa1235050 MtrunA17_Chr5g0439011 28.755 233 144 7 60 283 5 224 6.54e-28 110
Msa1235050 MtrunA17_Chr2g0289341 27.155 232 147 7 61 283 5 223 2.94e-27 108
Msa1235050 MtrunA17_Chr7g0250511 27.652 264 174 8 30 283 16 272 3.05e-27 108
Msa1235050 MtrunA17_Chr7g0239121 28.947 266 170 9 28 282 16 273 3.74e-27 108
Msa1235050 MtrunA17_Chr7g0239091 29.200 250 157 6 39 282 136 371 1.11e-26 108
Msa1235050 MtrunA17_Chr3g0130391 30.932 236 146 6 61 283 67 298 1.88e-26 107
Msa1235050 MtrunA17_Chr1g0148771 27.731 238 156 6 50 282 53 279 4.46e-26 105
Msa1235050 MtrunA17_Chr3g0121141 27.826 230 148 8 60 282 4 222 6.84e-26 104
Msa1235050 MtrunA17_Chr8g0370711 28.821 229 153 6 60 282 52 276 4.12e-25 102
Msa1235050 MtrunA17_Chr2g0296371 27.004 237 151 7 60 283 50 277 5.85e-25 102
Msa1235050 MtrunA17_Chr3g0125421 29.719 249 160 5 47 283 23 268 6.99e-25 102
Msa1235050 MtrunA17_Chr8g0370721 28.509 228 155 5 60 282 52 276 8.34e-25 102
Msa1235050 MtrunA17_Chr3g0087031 29.583 240 150 8 53 283 53 282 1.03e-24 102
Msa1235050 MtrunA17_Chr4g0045461 28.794 257 134 6 60 283 26 266 1.41e-24 101
Msa1235050 MtrunA17_Chr8g0351101 30.472 233 152 3 60 283 54 285 1.53e-24 101
Msa1235050 MtrunA17_Chr3g0092531 28.870 239 140 7 59 283 5 227 1.63e-24 100
Msa1235050 MtrunA17_Chr2g0319521 36.885 122 77 0 175 296 16 137 4.38e-24 95.1
Msa1235050 MtrunA17_Chr3g0145181 27.826 230 157 6 60 282 49 276 3.65e-23 97.4
Msa1235050 MtrunA17_Chr3g0126761 42.478 113 63 2 173 283 42 154 5.35e-23 94.7
Msa1235050 MtrunA17_Chr6g0488511 27.236 246 155 9 59 294 2 233 1.97e-22 94.7
Msa1235050 MtrunA17_Chr3g0145201 27.826 230 157 6 60 282 684 911 3.18e-22 97.1
Msa1235050 MtrunA17_Chr8g0384461 26.296 270 180 5 29 283 12 277 2.03e-21 92.8
Msa1235050 MtrunA17_Chr3g0114861 28.358 268 169 7 28 283 6 262 7.89e-21 90.9
Msa1235050 MtrunA17_Chr1g0161101 44.348 115 64 0 162 276 348 462 1.65e-20 91.3
Msa1235050 MtrunA17_Chr4g0037611 42.000 100 57 1 185 283 1 100 4.11e-20 85.9
Msa1235050 MtrunA17_Chr5g0394071 37.963 108 67 0 176 283 3 110 8.91e-20 85.1
Msa1235050 MtrunA17_Chr2g0311611 53.623 69 25 1 221 282 2 70 1.07e-19 81.3
Msa1235050 MtrunA17_Chr5g0420721 33.125 160 97 5 143 296 27 182 1.35e-19 86.3
Msa1235050 MtrunA17_Chr5g0407781 27.753 227 148 7 59 282 4 217 6.45e-19 85.1
Msa1235050 MtrunA17_Chr7g0239071 27.551 196 133 4 93 282 29 221 1.01e-18 84.7
Msa1235050 MtrunA17_Chr2g0285931 28.235 255 128 10 58 283 26 254 2.48e-18 84.0
Msa1235050 MtrunA17_Chr8g0348951 29.675 246 140 9 57 283 2 233 3.54e-18 83.2
Msa1235050 MtrunA17_Chr4g0068891 25.532 235 156 6 57 282 17 241 7.85e-18 82.4
Msa1235050 MtrunA17_Chr7g0219991 37.383 107 65 2 176 281 249 354 1.68e-17 81.6
Msa1235050 MtrunA17_Chr2g0313111 26.122 245 149 8 52 282 20 246 1.97e-17 81.3
Msa1235050 MtrunA17_Chr3g0092581 35.644 101 61 2 185 283 1 99 9.08e-17 76.6
Msa1235050 MtrunA17_Chr2g0311641 36.641 131 74 5 27 153 21 146 1.08e-16 76.3
Msa1235050 MtrunA17_Chr7g0233661 52.459 61 29 0 223 283 24 84 2.08e-16 75.1
Msa1235050 MtrunA17_Chr1g0158021 25.926 243 152 8 44 275 36 261 3.04e-16 77.0
Msa1235050 MtrunA17_Chr7g0247741 29.817 218 120 8 85 283 30 233 3.17e-16 77.8
Msa1235050 MtrunA17_Chr8g0384481 24.031 258 176 7 39 283 38 288 3.32e-16 78.2
Msa1235050 MtrunA17_Chr8g0389941 25.000 240 157 7 65 282 34 272 2.48e-15 75.5
Msa1235050 MtrunA17_Chr2g0311621 38.776 98 56 2 27 123 21 115 2.92e-15 70.9
Msa1235050 MtrunA17_Chr8g0375641 31.788 151 92 5 27 171 17 162 3.34e-15 72.4
Msa1235050 MtrunA17_Chr8g0375661 30.464 151 94 5 27 171 17 162 4.73e-15 71.6
Msa1235050 MtrunA17_Chr6g0486831 26.000 250 144 7 65 282 21 261 6.40e-15 73.9
Msa1235050 MtrunA17_Chr8g0375581 37.931 87 51 3 196 280 1 86 2.08e-14 67.4
Msa1235050 MtrunA17_Chr7g0252371 50.000 84 41 1 178 260 1 84 3.27e-14 67.8
Msa1235050 MtrunA17_Chr8g0375591 34.579 107 67 2 27 130 10 116 6.43e-14 67.4
Msa1235050 MtrunA17_Chr1g0170631 37.273 110 64 5 173 279 1 108 2.58e-13 67.4
Msa1235050 MtrunA17_Chr5g0420881 46.032 63 33 1 221 282 2 64 6.53e-13 65.1
Msa1235050 MtrunA17_Chr4g0064771 32.110 109 72 2 176 282 27 135 2.18e-12 65.1
Msa1235050 MtrunA17_Chr5g0420891 28.667 150 98 4 27 173 11 154 6.56e-12 62.8
Msa1235050 MtrunA17_Chr4g0055871 23.293 249 157 8 53 282 2 235 4.03e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235050 AT5G59540.2 56.727 275 111 5 15 283 12 284 4.59e-116 336
Msa1235050 AT5G59540.1 56.934 274 110 5 15 282 12 283 1.58e-115 337
Msa1235050 AT1G06640.2 54.125 303 125 5 4 296 1 299 1.61e-114 333
Msa1235050 AT1G06650.1 56.777 273 111 2 16 282 14 285 4.09e-114 332
Msa1235050 AT1G06650.2 56.777 273 111 2 16 282 14 285 1.14e-113 333
Msa1235050 AT1G06620.2 57.249 269 110 3 19 284 18 284 1.69e-113 329
Msa1235050 AT5G43440.2 53.623 276 120 2 15 284 11 284 1.24e-112 327
Msa1235050 AT1G04350.1 54.745 274 114 4 14 282 8 276 3.96e-112 328
Msa1235050 AT1G06620.1 57.303 267 109 3 19 282 18 282 6.53e-112 328
Msa1235050 AT5G59530.1 57.509 273 109 7 15 282 11 281 1.24e-110 325
Msa1235050 AT5G43440.1 53.285 274 120 2 15 282 11 282 3.56e-110 324
Msa1235050 AT1G06640.1 55.363 289 115 5 4 282 1 285 4.28e-110 323
Msa1235050 AT1G06640.3 55.052 287 115 5 4 280 1 283 1.97e-109 319
Msa1235050 AT1G06645.1 55.160 281 113 4 9 282 21 295 1.33e-108 320
Msa1235050 AT2G30840.2 54.380 274 119 3 16 284 9 281 6.51e-108 316
Msa1235050 AT2G30840.3 54.044 272 119 3 16 282 9 279 1.18e-106 315
Msa1235050 AT2G30840.1 54.044 272 119 3 16 282 9 279 1.47e-106 314
Msa1235050 AT2G30830.1 54.682 267 119 2 17 282 10 275 5.49e-106 313
Msa1235050 AT1G03410.2 52.381 273 122 4 16 282 8 278 2.12e-103 306
Msa1235050 AT1G03410.1 52.381 273 122 4 16 282 45 315 6.12e-103 306
Msa1235050 AT5G43450.2 52.030 271 119 4 20 284 16 281 1.19e-102 302
Msa1235050 AT5G43450.1 51.673 269 119 4 20 282 16 279 1.00e-100 300
Msa1235050 AT1G04380.2 50.362 276 117 5 16 289 13 270 1.07e-100 296
Msa1235050 AT2G25450.1 52.788 269 123 3 16 282 9 275 5.25e-100 298
Msa1235050 AT1G04380.1 51.119 268 112 4 16 282 13 262 8.89e-99 294
Msa1235050 AT3G61400.2 48.264 288 139 5 4 282 1 287 6.00e-96 285
Msa1235050 AT3G61400.1 48.264 288 139 5 4 282 1 287 1.62e-95 286
Msa1235050 AT1G03400.1 50.185 271 121 3 16 282 8 268 7.56e-94 281
Msa1235050 AT1G03400.2 50.185 271 121 3 16 282 8 268 4.59e-93 281
Msa1235050 AT4G10500.1 32.618 233 152 2 52 282 36 265 1.18e-45 157
Msa1235050 AT2G38240.1 33.798 287 171 7 21 296 5 283 3.38e-45 157
Msa1235050 AT3G13610.1 34.848 264 156 7 27 282 26 281 5.64e-44 154
Msa1235050 AT3G12900.1 36.293 259 159 5 27 282 21 276 6.51e-44 153
Msa1235050 AT1G55290.1 34.091 264 159 6 27 282 25 281 5.57e-43 151
Msa1235050 AT4G10490.1 31.356 236 157 2 49 282 31 263 1.60e-42 149
Msa1235050 AT5G05600.2 31.142 289 180 7 4 282 10 289 1.94e-41 145
Msa1235050 AT5G05600.1 30.592 304 188 9 4 296 10 301 5.43e-41 146
Msa1235050 AT5G24530.1 32.773 238 149 4 60 294 38 267 3.59e-40 143
Msa1235050 AT2G36690.2 32.234 273 163 8 25 282 18 283 5.54e-40 143
Msa1235050 AT2G36690.1 32.234 273 163 8 25 282 18 283 5.54e-40 143
Msa1235050 AT3G55970.2 31.915 282 177 7 21 288 7 287 3.10e-39 139
Msa1235050 AT1G17020.1 34.553 246 138 7 60 292 53 288 7.81e-39 140
Msa1235050 AT3G55970.1 31.724 290 181 8 21 296 7 293 1.26e-38 139
Msa1235050 AT3G11180.1 29.966 297 186 8 1 282 29 318 5.80e-37 136
Msa1235050 AT3G11180.2 29.966 297 186 8 1 282 29 318 5.80e-37 136
Msa1235050 AT4G25300.1 33.878 245 144 6 58 292 50 286 7.73e-37 135
Msa1235050 AT4G22880.1 30.258 271 172 6 28 282 7 276 1.29e-35 131
Msa1235050 AT4G22880.2 30.258 271 172 6 28 282 7 276 1.29e-35 131
Msa1235050 AT4G22880.3 30.258 271 172 6 28 282 7 276 1.29e-35 131
Msa1235050 AT4G25310.1 34.978 223 126 7 80 292 70 283 2.53e-35 130
Msa1235050 AT3G19010.2 31.579 247 146 5 55 283 23 264 1.51e-34 127
Msa1235050 AT3G19010.1 31.707 246 145 5 55 282 23 263 2.00e-34 128
Msa1235050 AT3G19010.4 31.707 246 145 5 55 282 23 263 2.00e-34 128
Msa1235050 AT3G19000.2 30.072 276 165 8 30 284 2 270 1.31e-33 124
Msa1235050 AT4G21200.1 30.303 231 142 6 60 283 42 260 3.28e-33 124
Msa1235050 AT3G51240.1 32.685 257 156 7 34 279 10 260 3.48e-33 125
Msa1235050 AT3G19000.1 30.292 274 163 8 30 282 2 268 7.14e-33 124
Msa1235050 AT1G78550.1 32.937 252 154 8 40 282 31 276 7.60e-33 124
Msa1235050 AT3G21420.1 29.927 274 166 6 28 283 17 282 5.78e-32 122
Msa1235050 AT5G08640.2 32.018 228 141 6 59 279 42 262 1.45e-31 120
Msa1235050 AT5G08640.1 32.018 228 141 6 59 279 42 262 1.45e-31 120
Msa1235050 AT4G16330.2 29.694 229 142 6 60 279 67 285 2.10e-31 120
Msa1235050 AT1G17010.1 32.197 264 162 8 40 292 31 288 2.33e-31 120
Msa1235050 AT1G15550.1 30.380 237 143 7 56 282 53 277 4.15e-30 117
Msa1235050 AT1G60980.1 29.478 268 160 5 42 283 28 292 5.39e-30 117
Msa1235050 AT4G25420.2 30.233 258 168 3 39 286 40 295 6.45e-30 115
Msa1235050 AT2G44800.1 27.304 293 177 7 21 294 9 284 7.79e-30 116
Msa1235050 AT4G25420.1 30.588 255 165 3 39 283 40 292 1.36e-29 115
Msa1235050 AT1G77330.1 30.962 239 135 8 59 282 2 225 3.95e-29 113
Msa1235050 AT3G60290.1 29.388 245 151 6 60 294 52 284 1.98e-27 109
Msa1235050 AT5G07200.1 27.758 281 189 4 15 283 13 291 2.15e-27 110
Msa1235050 AT3G19010.3 29.915 234 135 7 55 282 23 233 3.79e-27 108
Msa1235050 AT1G50960.1 28.458 253 169 5 51 296 25 272 4.39e-27 108
Msa1235050 AT1G05010.1 29.185 233 143 7 60 283 4 223 9.78e-27 107
Msa1235050 AT1G80330.1 28.387 310 151 12 34 296 14 299 9.87e-27 107
Msa1235050 AT5G63580.1 29.289 239 145 6 57 284 16 241 2.83e-26 104
Msa1235050 AT5G12270.1 28.358 268 175 7 25 282 18 278 7.04e-26 105
Msa1235050 AT1G62380.1 28.448 232 144 7 60 282 7 225 7.48e-26 104
Msa1235050 AT1G12010.1 26.923 234 145 7 60 282 7 225 8.99e-26 104
Msa1235050 AT5G63580.2 29.487 234 141 6 57 279 16 236 1.06e-25 102
Msa1235050 AT1G78550.2 32.828 198 122 6 92 282 5 198 1.71e-25 102
Msa1235050 AT5G51810.2 31.197 234 137 6 60 279 63 286 5.44e-25 102
Msa1235050 AT5G51810.1 31.092 238 140 6 60 283 63 290 6.06e-25 103
Msa1235050 AT1G80340.1 28.958 259 160 8 36 282 24 270 9.00e-25 102
Msa1235050 AT5G63590.1 32.218 239 143 8 51 279 4 233 4.14e-24 99.8
Msa1235050 AT5G20400.1 27.652 264 180 6 28 282 9 270 4.96e-24 100
Msa1235050 AT5G63600.1 28.509 228 145 5 60 281 33 248 1.68e-23 98.6
Msa1235050 AT5G63595.1 28.992 238 119 8 56 279 21 222 1.72e-23 97.4
Msa1235050 AT5G63600.2 28.509 228 145 5 60 281 33 248 1.83e-23 98.2
Msa1235050 AT1G44090.1 30.328 244 138 7 60 283 63 294 1.30e-22 97.1
Msa1235050 AT5G07480.1 26.744 258 174 7 47 294 31 283 3.21e-22 95.5
Msa1235050 AT5G58660.1 26.070 257 141 9 60 283 34 274 1.33e-21 93.6
Msa1235050 AT5G20550.1 27.820 266 178 9 28 282 9 271 1.60e-21 93.2
Msa1235050 AT3G47190.1 25.417 240 149 7 60 283 32 257 1.98e-21 92.8
Msa1235050 AT3G51240.2 42.308 104 54 3 180 279 75 176 2.04e-21 91.7
Msa1235050 AT4G25310.2 29.279 222 112 7 80 292 70 255 2.07e-21 92.8
Msa1235050 AT5G58660.2 25.781 256 141 9 60 282 34 273 2.41e-21 91.7
Msa1235050 AT4G16330.1 32.836 134 87 1 149 279 46 179 4.83e-21 90.5
Msa1235050 AT5G54000.2 26.966 267 181 7 28 283 9 272 7.17e-21 91.7
Msa1235050 AT2G19590.1 27.897 233 143 9 60 282 11 228 8.56e-21 90.9
Msa1235050 AT1G49390.1 25.758 264 185 7 28 282 9 270 1.08e-20 90.9
Msa1235050 AT4G21690.1 29.339 242 142 9 56 280 43 272 1.57e-20 90.5
Msa1235050 AT1G14130.1 28.936 235 133 7 59 280 8 221 2.62e-19 86.7
Msa1235050 AT4G25300.2 39.167 120 71 2 175 292 73 192 5.55e-19 84.7
Msa1235050 AT1G14120.2 28.870 239 134 9 56 280 4 220 2.96e-18 83.6
Msa1235050 AT1G14120.1 28.870 239 134 9 56 280 4 220 2.96e-18 83.6
Msa1235050 AT1G14120.3 28.870 239 134 9 56 280 4 220 2.96e-18 83.6
Msa1235050 AT4G23340.1 30.769 208 129 6 86 283 30 232 1.41e-17 82.0
Msa1235050 AT1G30040.2 26.459 257 156 9 56 294 27 268 2.56e-16 77.4
Msa1235050 AT5G54000.1 27.461 193 134 4 96 283 1 192 5.64e-16 76.6
Msa1235050 AT1G30040.1 26.141 241 149 8 56 282 27 252 1.03e-15 76.6
Msa1235050 AT5G43935.1 25.641 234 131 7 60 281 19 221 2.33e-15 75.1
Msa1235050 AT2G34555.1 26.667 240 144 8 59 283 26 248 2.92e-15 75.5
Msa1235050 AT5G51310.1 26.829 246 141 8 60 283 5 233 1.31e-14 73.6
Msa1235050 AT1G78440.1 26.295 251 135 10 58 282 16 242 2.20e-14 72.8
Msa1235050 AT2G19590.2 26.768 198 127 7 93 282 26 213 1.66e-13 70.1
Msa1235050 AT1G49390.2 25.000 192 138 4 96 282 1 191 1.89e-13 69.3
Msa1235050 AT2G06960.1 46.667 60 27 1 217 276 27 81 6.28e-13 65.5
Msa1235050 AT4G16770.1 27.197 239 141 10 55 271 17 244 1.51e-11 63.9

Find 76 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTACTAATAATAGTTTA+TGG 0.210216 8_2:-12866220 None:intergenic
GTTGTTCCCACAGTCAATTC+TGG 0.240799 8_2:-12866027 None:intergenic
AAGTTCTTTATGAAGATAAA+TGG 0.252533 8_2:+12866109 Msa1235050:CDS
ACCAAACCATTTGAAAGATA+TGG 0.258398 8_2:+12865951 Msa1235050:CDS
ATTTATATTTCTAGAGGTTC+TGG 0.259943 8_2:-12864511 None:intergenic
TCTTCTGGTTTGAGAGTATC+AGG 0.295106 8_2:-12865020 None:intergenic
GAAACAAAAGCAGGTGTAAA+AGG 0.300249 8_2:+12864603 Msa1235050:CDS
GGAAAACACATGATGAATCT+AGG 0.331310 8_2:+12865886 Msa1235050:CDS
CTCAATTGGAAGGATAGTTT+TGG 0.336725 8_2:+12864981 Msa1235050:CDS
TCCATATCTTTCAAATGGTT+TGG 0.339562 8_2:-12865952 None:intergenic
TATACGTAACTCTCTGTCTT+TGG 0.345455 8_2:+12864446 Msa1235050:five_prime_UTR
CATACTACAGGAAACTCTTC+TGG 0.350265 8_2:-12865035 None:intergenic
GTTAGGTTTGGTTGTATCAA+TGG 0.379115 8_2:-12864544 None:intergenic
GAATTGTTGTCAGAAGCTTT+AGG 0.379576 8_2:+12865922 Msa1235050:CDS
GGTTGATGATGGAATAATTC+AGG 0.384299 8_2:-12864654 None:intergenic
CCCACAGTCAATTCTGGTTC+AGG 0.384551 8_2:-12866021 None:intergenic
AATAACATTGCTTGTGTTGT+TGG 0.393117 8_2:-12864694 None:intergenic
CGTATTTGTCAGGTTGATGA+TGG 0.404579 8_2:-12864665 None:intergenic
TCAAGGAAGCATGTGAAACT+TGG 0.407695 8_2:+12864784 Msa1235050:CDS
CACAATCCATATCTTTCAAA+TGG 0.407796 8_2:-12865957 None:intergenic
CTCTAGAAATATAAATAGAA+TGG 0.415101 8_2:+12864518 Msa1235050:exon
CTGAATGTGGAATCAAGGTT+AGG 0.417776 8_2:-12864561 None:intergenic
ATAGCTCCCCAGCACTCAAT+TGG 0.419090 8_2:+12864967 Msa1235050:CDS
AGAGATATACTGCTACAATA+TGG 0.421575 8_2:+12865865 Msa1235050:intron
TTGGCTTTCTCGTATTTGTC+AGG 0.425112 8_2:-12864675 None:intergenic
ATTTATCTTCATAAAGAACT+TGG 0.428540 8_2:-12866107 None:intergenic
GTGCTTCTTCAAGACCATAT+TGG 0.431127 8_2:+12866078 Msa1235050:CDS
ACTATCCCTTGGTGAATACT+TGG 0.435000 8_2:-12864753 None:intergenic
GAACTTGGAGGCCACCAATA+TGG 0.439098 8_2:-12866092 None:intergenic
CAGGACAAGAAGGATAATAA+TGG 0.443073 8_2:-12866002 None:intergenic
GTTCTTGAGGAGTTGAAAGA+TGG 0.453205 8_2:+12864846 Msa1235050:CDS
TGACTTTCTCAACTATCCCT+TGG 0.453903 8_2:-12864764 None:intergenic
CTATCCTTCCAATTGAGTGC+TGG 0.480825 8_2:-12864975 None:intergenic
TATCCTTCCAATTGAGTGCT+GGG 0.483226 8_2:-12864974 None:intergenic
GGTGTAAAAGGACTTGTTGA+TGG 0.488743 8_2:+12864615 Msa1235050:CDS
CAAGGAAGCATGTGAAACTT+GGG 0.490551 8_2:+12864785 Msa1235050:CDS
TGTGGAATCAAGGTTAGGTT+TGG 0.492547 8_2:-12864556 None:intergenic
TCTAGAAATATAAATAGAAT+GGG 0.498993 8_2:+12864519 Msa1235050:exon
AGTTGAAAGATGGGGTGAAA+AGG 0.500490 8_2:+12864856 Msa1235050:CDS
GAAAACACATGATGAATCTA+GGG 0.500724 8_2:+12865887 Msa1235050:CDS
TATCTTCATAAAGAACTTGG+AGG 0.504240 8_2:-12866104 None:intergenic
AAAGATATGGATTGTGCTCA+AGG 0.508149 8_2:+12865964 Msa1235050:CDS
AACTCCTCAAGAACACTCAA+AGG 0.516232 8_2:-12864837 None:intergenic
TGCTTTGCGTTCACTGAATG+TGG 0.522597 8_2:-12864574 None:intergenic
ACTCCTCAAGAACACTCAAA+GGG 0.527377 8_2:-12864836 None:intergenic
CTTTATTATCAATATCATCA+AGG 0.531884 8_2:-12864728 None:intergenic
ACTATGAGAGCTCCAGGTAC+AGG 0.532297 8_2:-12866144 None:intergenic
GTTCACTGAATGTGGAATCA+AGG 0.532410 8_2:-12864566 None:intergenic
CTTCTTCAAGACCATATTGG+TGG 0.533768 8_2:+12866081 Msa1235050:CDS
TACGTATATAAACAAATATG+TGG 0.537367 8_2:-12864431 None:intergenic
ACATTAACTATGAGAGCTCC+AGG 0.542016 8_2:-12866150 None:intergenic
AAGAGTTTCCTGTAGTATGC+AGG 0.544361 8_2:+12865039 Msa1235050:CDS
TAAACATACCTGCATACTAC+AGG 0.544570 8_2:-12865047 None:intergenic
AATCCCTTTGAGTGTTCTTG+AGG 0.545874 8_2:+12864833 Msa1235050:CDS
CATTCTATTTATATTTCTAG+AGG 0.550360 8_2:-12864517 None:intergenic
GGAGCTCTCATAGTTAATGT+TGG 0.553848 8_2:+12866153 Msa1235050:CDS
TTCTTGAGGAGTTGAAAGAT+GGG 0.560902 8_2:+12864847 Msa1235050:CDS
CTCCCCAGCACTCAATTGGA+AGG 0.579306 8_2:+12864971 Msa1235050:CDS
ATTGATATAACACCTGTACC+TGG 0.585161 8_2:+12866132 Msa1235050:CDS
AATTCTGGTTCAGGACAAGA+AGG 0.588777 8_2:-12866012 None:intergenic
ATATCATCAAGGTCTATGAC+AGG 0.589876 8_2:-12864717 None:intergenic
GCATTTGATGAAACAAAAGC+AGG 0.595830 8_2:+12864594 Msa1235050:CDS
TTCTGATAATGATTTCCTCA+CGG 0.610874 8_2:+12866056 Msa1235050:CDS
AAGGGGACGGCTGTCTATGT+CGG 0.630188 8_2:+12864352 None:intergenic
AGGGATAGTTGAGAAAGTCA+AGG 0.633105 8_2:+12864767 Msa1235050:CDS
TCTGGTTTGAGAGTATCAGG+TGG 0.638557 8_2:-12865017 None:intergenic
AAGATCCAAGTATTCACCAA+GGG 0.638816 8_2:+12864748 Msa1235050:CDS
AAGATATGGATTGTGCTCAA+GGG 0.643268 8_2:+12865965 Msa1235050:CDS
AAGGAAGCATGTGAAACTTG+GGG 0.645602 8_2:+12864786 Msa1235050:CDS
ATCCTTCCAATTGAGTGCTG+GGG 0.645721 8_2:-12864973 None:intergenic
GTAAAAGGACTTGTTGATGG+AGG 0.671654 8_2:+12864618 Msa1235050:CDS
AAAGATCCAAGTATTCACCA+AGG 0.675646 8_2:+12864747 Msa1235050:CDS
TCCTGAACCAGAATTGACTG+TGG 0.682984 8_2:+12866020 Msa1235050:CDS
TCTTGAGGAGTTGAAAGATG+GGG 0.685762 8_2:+12864848 Msa1235050:CDS
CCTGAACCAGAATTGACTGT+GGG 0.714206 8_2:+12866021 Msa1235050:CDS
GGTCTTGAAGAAGCACCGTG+AGG 0.748481 8_2:-12866071 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTAGTTTATTTATAATT+CGG + chr8_2:12865223-12865242 Msa1235050:intron 10.0%
!!! GATTAATATATTTTAACATA+AGG - chr8_2:12865692-12865711 None:intergenic 10.0%
!!! AGTTTAGTTTATTTATAATT+CGG + chr8_2:12865223-12865242 Msa1235050:intron 10.0%
!!! GATTAATATATTTTAACATA+AGG - chr8_2:12865692-12865711 None:intergenic 10.0%
!! TCTAGAAATATAAATAGAAT+GGG + chr8_2:12864519-12864538 Msa1235050:exon 15.0%
!! ATATTAGAGATATTAGAAAA+AGG - chr8_2:12865615-12865634 None:intergenic 15.0%
!! TCACATATAATAGTATAAAA+TGG + chr8_2:12865797-12865816 Msa1235050:intron 15.0%
!! ACATTACTAATAATAGTTTA+TGG - chr8_2:12866223-12866242 None:intergenic 15.0%
!! TCTAGAAATATAAATAGAAT+GGG + chr8_2:12864519-12864538 Msa1235050:exon 15.0%
!! ATATTAGAGATATTAGAAAA+AGG - chr8_2:12865615-12865634 None:intergenic 15.0%
!! TCACATATAATAGTATAAAA+TGG + chr8_2:12865797-12865816 Msa1235050:intron 15.0%
!! ACATTACTAATAATAGTTTA+TGG - chr8_2:12866223-12866242 None:intergenic 15.0%
!!! TATTTAACGAGTTACATTTT+AGG - chr8_2:12864404-12864423 None:intergenic 20.0%
!! TACGTATATAAACAAATATG+TGG - chr8_2:12864434-12864453 None:intergenic 20.0%
!!! CATTCTATTTATATTTCTAG+AGG - chr8_2:12864520-12864539 None:intergenic 20.0%
!!! CTCTAGAAATATAAATAGAA+TGG + chr8_2:12864518-12864537 Msa1235050:exon 20.0%
!! CTTTATTATCAATATCATCA+AGG - chr8_2:12864731-12864750 None:intergenic 20.0%
!! TTTATTTGCTCATTGAAATT+TGG + chr8_2:12865085-12865104 Msa1235050:intron 20.0%
!! TCTGTTAAATAATGTGTAAT+GGG + chr8_2:12865174-12865193 Msa1235050:intron 20.0%
!! ATTTATCTTCATAAAGAACT+TGG - chr8_2:12866110-12866129 None:intergenic 20.0%
!! AAGTTCTTTATGAAGATAAA+TGG + chr8_2:12866109-12866128 Msa1235050:CDS 20.0%
!!! TATTTAACGAGTTACATTTT+AGG - chr8_2:12864404-12864423 None:intergenic 20.0%
!! TACGTATATAAACAAATATG+TGG - chr8_2:12864434-12864453 None:intergenic 20.0%
!!! CATTCTATTTATATTTCTAG+AGG - chr8_2:12864520-12864539 None:intergenic 20.0%
!!! CTCTAGAAATATAAATAGAA+TGG + chr8_2:12864518-12864537 Msa1235050:exon 20.0%
!! CTTTATTATCAATATCATCA+AGG - chr8_2:12864731-12864750 None:intergenic 20.0%
!! TTTATTTGCTCATTGAAATT+TGG + chr8_2:12865085-12865104 Msa1235050:intron 20.0%
!! TCTGTTAAATAATGTGTAAT+GGG + chr8_2:12865174-12865193 Msa1235050:intron 20.0%
!! ATTTATCTTCATAAAGAACT+TGG - chr8_2:12866110-12866129 None:intergenic 20.0%
!! AAGTTCTTTATGAAGATAAA+TGG + chr8_2:12866109-12866128 Msa1235050:CDS 20.0%
!!! ATTTATATTTCTAGAGGTTC+TGG - chr8_2:12864514-12864533 None:intergenic 25.0%
!!! TTTTTTCAAGTTGTCAATCA+TGG + chr8_2:12864810-12864829 Msa1235050:CDS 25.0%
! GTCTGTTAAATAATGTGTAA+TGG + chr8_2:12865173-12865192 Msa1235050:intron 25.0%
!!! TTTTGTTATAATTCGGCTAA+GGG + chr8_2:12865199-12865218 Msa1235050:intron 25.0%
!! TGTATGAAATGTGTTTTCAT+TGG + chr8_2:12865649-12865668 Msa1235050:intron 25.0%
!!! ATTTATATTTCTAGAGGTTC+TGG - chr8_2:12864514-12864533 None:intergenic 25.0%
!!! TTTTTTCAAGTTGTCAATCA+TGG + chr8_2:12864810-12864829 Msa1235050:CDS 25.0%
! GTCTGTTAAATAATGTGTAA+TGG + chr8_2:12865173-12865192 Msa1235050:intron 25.0%
!!! TTTTGTTATAATTCGGCTAA+GGG + chr8_2:12865199-12865218 Msa1235050:intron 25.0%
!! TGTATGAAATGTGTTTTCAT+TGG + chr8_2:12865649-12865668 Msa1235050:intron 25.0%
AATAACATTGCTTGTGTTGT+TGG - chr8_2:12864697-12864716 None:intergenic 30.0%
!! ATGGGCCTTTTGTTATAATT+CGG + chr8_2:12865192-12865211 Msa1235050:intron 30.0%
CTTAGCCGAATTATAACAAA+AGG - chr8_2:12865200-12865219 None:intergenic 30.0%
!! CTTTTGTTATAATTCGGCTA+AGG + chr8_2:12865198-12865217 Msa1235050:intron 30.0%
AGAAGAGAACAAAAGAACAA+AGG - chr8_2:12865305-12865324 None:intergenic 30.0%
ATGAAACACTACTAACATGT+TGG - chr8_2:12865451-12865470 None:intergenic 30.0%
ACATGTTAGTAGTGTTTCAT+AGG + chr8_2:12865451-12865470 Msa1235050:intron 30.0%
GTTTCATAGGACTTAAGTTA+AGG + chr8_2:12865464-12865483 Msa1235050:intron 30.0%
TTTGTCTAATCGAAGTAACA+AGG + chr8_2:12865516-12865535 Msa1235050:intron 30.0%
AGCTTGAGTATGACTTAAAT+AGG - chr8_2:12865589-12865608 None:intergenic 30.0%
CATCTCTAGCAAATAAGAAA+AGG - chr8_2:12865738-12865757 None:intergenic 30.0%
AGAGATATACTGCTACAATA+TGG + chr8_2:12865865-12865884 Msa1235050:intron 30.0%
GAAAACACATGATGAATCTA+GGG + chr8_2:12865887-12865906 Msa1235050:CDS 30.0%
ACCAAACCATTTGAAAGATA+TGG + chr8_2:12865951-12865970 Msa1235050:CDS 30.0%
TCCATATCTTTCAAATGGTT+TGG - chr8_2:12865955-12865974 None:intergenic 30.0%
CACAATCCATATCTTTCAAA+TGG - chr8_2:12865960-12865979 None:intergenic 30.0%
! TTCTGATAATGATTTCCTCA+CGG + chr8_2:12866056-12866075 Msa1235050:CDS 30.0%
TATCTTCATAAAGAACTTGG+AGG - chr8_2:12866107-12866126 None:intergenic 30.0%
AATAACATTGCTTGTGTTGT+TGG - chr8_2:12864697-12864716 None:intergenic 30.0%
!! ATGGGCCTTTTGTTATAATT+CGG + chr8_2:12865192-12865211 Msa1235050:intron 30.0%
CTTAGCCGAATTATAACAAA+AGG - chr8_2:12865200-12865219 None:intergenic 30.0%
!! CTTTTGTTATAATTCGGCTA+AGG + chr8_2:12865198-12865217 Msa1235050:intron 30.0%
AGAAGAGAACAAAAGAACAA+AGG - chr8_2:12865305-12865324 None:intergenic 30.0%
ATGAAACACTACTAACATGT+TGG - chr8_2:12865451-12865470 None:intergenic 30.0%
ACATGTTAGTAGTGTTTCAT+AGG + chr8_2:12865451-12865470 Msa1235050:intron 30.0%
GTTTCATAGGACTTAAGTTA+AGG + chr8_2:12865464-12865483 Msa1235050:intron 30.0%
TTTGTCTAATCGAAGTAACA+AGG + chr8_2:12865516-12865535 Msa1235050:intron 30.0%
AGCTTGAGTATGACTTAAAT+AGG - chr8_2:12865589-12865608 None:intergenic 30.0%
CATCTCTAGCAAATAAGAAA+AGG - chr8_2:12865738-12865757 None:intergenic 30.0%
AGAGATATACTGCTACAATA+TGG + chr8_2:12865865-12865884 Msa1235050:intron 30.0%
GAAAACACATGATGAATCTA+GGG + chr8_2:12865887-12865906 Msa1235050:CDS 30.0%
ACCAAACCATTTGAAAGATA+TGG + chr8_2:12865951-12865970 Msa1235050:CDS 30.0%
TCCATATCTTTCAAATGGTT+TGG - chr8_2:12865955-12865974 None:intergenic 30.0%
CACAATCCATATCTTTCAAA+TGG - chr8_2:12865960-12865979 None:intergenic 30.0%
! TTCTGATAATGATTTCCTCA+CGG + chr8_2:12866056-12866075 Msa1235050:CDS 30.0%
TATCTTCATAAAGAACTTGG+AGG - chr8_2:12866107-12866126 None:intergenic 30.0%
TATACGTAACTCTCTGTCTT+TGG + chr8_2:12864446-12864465 Msa1235050:five_prime_UTR 35.0%
! GTTAGGTTTGGTTGTATCAA+TGG - chr8_2:12864547-12864566 None:intergenic 35.0%
GCATTTGATGAAACAAAAGC+AGG + chr8_2:12864594-12864613 Msa1235050:CDS 35.0%
GAAACAAAAGCAGGTGTAAA+AGG + chr8_2:12864603-12864622 Msa1235050:CDS 35.0%
!! GGTTGATGATGGAATAATTC+AGG - chr8_2:12864657-12864676 None:intergenic 35.0%
ATATCATCAAGGTCTATGAC+AGG - chr8_2:12864720-12864739 None:intergenic 35.0%
AAAGATCCAAGTATTCACCA+AGG + chr8_2:12864747-12864766 Msa1235050:CDS 35.0%
AAGATCCAAGTATTCACCAA+GGG + chr8_2:12864748-12864767 Msa1235050:CDS 35.0%
TTCTTGAGGAGTTGAAAGAT+GGG + chr8_2:12864847-12864866 Msa1235050:CDS 35.0%
! CTCAATTGGAAGGATAGTTT+TGG + chr8_2:12864981-12865000 Msa1235050:CDS 35.0%
!!! GGATAGTTTTGGTTGTAACT+TGG + chr8_2:12864992-12865011 Msa1235050:CDS 35.0%
TAAACATACCTGCATACTAC+AGG - chr8_2:12865050-12865069 None:intergenic 35.0%
CACTTTACAGTATAGAGTAC+TGG - chr8_2:12865328-12865347 None:intergenic 35.0%
AGTATGACTTAAATAGGCAG+CGG - chr8_2:12865583-12865602 None:intergenic 35.0%
! TAGAGATGCATCTCTTTTAC+AGG + chr8_2:12865750-12865769 Msa1235050:intron 35.0%
! ATGCATCTCTTTTACAGGAA+AGG + chr8_2:12865755-12865774 Msa1235050:intron 35.0%
GGAAAACACATGATGAATCT+AGG + chr8_2:12865886-12865905 Msa1235050:CDS 35.0%
GAATTGTTGTCAGAAGCTTT+AGG + chr8_2:12865922-12865941 Msa1235050:CDS 35.0%
! AAAGATATGGATTGTGCTCA+AGG + chr8_2:12865964-12865983 Msa1235050:CDS 35.0%
! AAGATATGGATTGTGCTCAA+GGG + chr8_2:12865965-12865984 Msa1235050:CDS 35.0%
CAGGACAAGAAGGATAATAA+TGG - chr8_2:12866005-12866024 None:intergenic 35.0%
ATTGATATAACACCTGTACC+TGG + chr8_2:12866132-12866151 Msa1235050:CDS 35.0%
! TAATGTTGGAGATCTTTTGC+AGG + chr8_2:12866167-12866186 Msa1235050:CDS 35.0%
TATACGTAACTCTCTGTCTT+TGG + chr8_2:12864446-12864465 Msa1235050:five_prime_UTR 35.0%
! GTTAGGTTTGGTTGTATCAA+TGG - chr8_2:12864547-12864566 None:intergenic 35.0%
GCATTTGATGAAACAAAAGC+AGG + chr8_2:12864594-12864613 Msa1235050:CDS 35.0%
GAAACAAAAGCAGGTGTAAA+AGG + chr8_2:12864603-12864622 Msa1235050:CDS 35.0%
!! GGTTGATGATGGAATAATTC+AGG - chr8_2:12864657-12864676 None:intergenic 35.0%
ATATCATCAAGGTCTATGAC+AGG - chr8_2:12864720-12864739 None:intergenic 35.0%
AAAGATCCAAGTATTCACCA+AGG + chr8_2:12864747-12864766 Msa1235050:CDS 35.0%
AAGATCCAAGTATTCACCAA+GGG + chr8_2:12864748-12864767 Msa1235050:CDS 35.0%
TTCTTGAGGAGTTGAAAGAT+GGG + chr8_2:12864847-12864866 Msa1235050:CDS 35.0%
! CTCAATTGGAAGGATAGTTT+TGG + chr8_2:12864981-12865000 Msa1235050:CDS 35.0%
!!! GGATAGTTTTGGTTGTAACT+TGG + chr8_2:12864992-12865011 Msa1235050:CDS 35.0%
TAAACATACCTGCATACTAC+AGG - chr8_2:12865050-12865069 None:intergenic 35.0%
CACTTTACAGTATAGAGTAC+TGG - chr8_2:12865328-12865347 None:intergenic 35.0%
AGTATGACTTAAATAGGCAG+CGG - chr8_2:12865583-12865602 None:intergenic 35.0%
! TAGAGATGCATCTCTTTTAC+AGG + chr8_2:12865750-12865769 Msa1235050:intron 35.0%
! ATGCATCTCTTTTACAGGAA+AGG + chr8_2:12865755-12865774 Msa1235050:intron 35.0%
GGAAAACACATGATGAATCT+AGG + chr8_2:12865886-12865905 Msa1235050:CDS 35.0%
GAATTGTTGTCAGAAGCTTT+AGG + chr8_2:12865922-12865941 Msa1235050:CDS 35.0%
! AAAGATATGGATTGTGCTCA+AGG + chr8_2:12865964-12865983 Msa1235050:CDS 35.0%
! AAGATATGGATTGTGCTCAA+GGG + chr8_2:12865965-12865984 Msa1235050:CDS 35.0%
CAGGACAAGAAGGATAATAA+TGG - chr8_2:12866005-12866024 None:intergenic 35.0%
ATTGATATAACACCTGTACC+TGG + chr8_2:12866132-12866151 Msa1235050:CDS 35.0%
! TAATGTTGGAGATCTTTTGC+AGG + chr8_2:12866167-12866186 Msa1235050:CDS 35.0%
TGTGGAATCAAGGTTAGGTT+TGG - chr8_2:12864559-12864578 None:intergenic 40.0%
CTGAATGTGGAATCAAGGTT+AGG - chr8_2:12864564-12864583 None:intergenic 40.0%
GTTCACTGAATGTGGAATCA+AGG - chr8_2:12864569-12864588 None:intergenic 40.0%
!! GGTGTAAAAGGACTTGTTGA+TGG + chr8_2:12864615-12864634 Msa1235050:CDS 40.0%
!! GTAAAAGGACTTGTTGATGG+AGG + chr8_2:12864618-12864637 Msa1235050:CDS 40.0%
!! CGTATTTGTCAGGTTGATGA+TGG - chr8_2:12864668-12864687 None:intergenic 40.0%
! TTGGCTTTCTCGTATTTGTC+AGG - chr8_2:12864678-12864697 None:intergenic 40.0%
ACTATCCCTTGGTGAATACT+TGG - chr8_2:12864756-12864775 None:intergenic 40.0%
TGACTTTCTCAACTATCCCT+TGG - chr8_2:12864767-12864786 None:intergenic 40.0%
AGGGATAGTTGAGAAAGTCA+AGG + chr8_2:12864767-12864786 Msa1235050:CDS 40.0%
! TCAAGGAAGCATGTGAAACT+TGG + chr8_2:12864784-12864803 Msa1235050:CDS 40.0%
! CAAGGAAGCATGTGAAACTT+GGG + chr8_2:12864785-12864804 Msa1235050:CDS 40.0%
! AAGGAAGCATGTGAAACTTG+GGG + chr8_2:12864786-12864805 Msa1235050:CDS 40.0%
AATCCCTTTGAGTGTTCTTG+AGG + chr8_2:12864833-12864852 Msa1235050:CDS 40.0%
ACTCCTCAAGAACACTCAAA+GGG - chr8_2:12864839-12864858 None:intergenic 40.0%
AACTCCTCAAGAACACTCAA+AGG - chr8_2:12864840-12864859 None:intergenic 40.0%
GTTCTTGAGGAGTTGAAAGA+TGG + chr8_2:12864846-12864865 Msa1235050:CDS 40.0%
TCTTGAGGAGTTGAAAGATG+GGG + chr8_2:12864848-12864867 Msa1235050:CDS 40.0%
AGTTGAAAGATGGGGTGAAA+AGG + chr8_2:12864856-12864875 Msa1235050:CDS 40.0%
TATCCTTCCAATTGAGTGCT+GGG - chr8_2:12864977-12864996 None:intergenic 40.0%
!! TCTTCTGGTTTGAGAGTATC+AGG - chr8_2:12865023-12865042 None:intergenic 40.0%
CATACTACAGGAAACTCTTC+TGG - chr8_2:12865038-12865057 None:intergenic 40.0%
AAGAGTTTCCTGTAGTATGC+AGG + chr8_2:12865039-12865058 Msa1235050:CDS 40.0%
! GCAGCACTGAAATTTCAGAT+TGG + chr8_2:12865120-12865139 Msa1235050:intron 40.0%
!! AATTCTGGTTCAGGACAAGA+AGG - chr8_2:12866015-12866034 None:intergenic 40.0%
GTGCTTCTTCAAGACCATAT+TGG + chr8_2:12866078-12866097 Msa1235050:CDS 40.0%
CTTCTTCAAGACCATATTGG+TGG + chr8_2:12866081-12866100 Msa1235050:CDS 40.0%
ACATTAACTATGAGAGCTCC+AGG - chr8_2:12866153-12866172 None:intergenic 40.0%
GGAGCTCTCATAGTTAATGT+TGG + chr8_2:12866153-12866172 Msa1235050:CDS 40.0%
TGTGGAATCAAGGTTAGGTT+TGG - chr8_2:12864559-12864578 None:intergenic 40.0%
CTGAATGTGGAATCAAGGTT+AGG - chr8_2:12864564-12864583 None:intergenic 40.0%
GTTCACTGAATGTGGAATCA+AGG - chr8_2:12864569-12864588 None:intergenic 40.0%
!! GGTGTAAAAGGACTTGTTGA+TGG + chr8_2:12864615-12864634 Msa1235050:CDS 40.0%
!! GTAAAAGGACTTGTTGATGG+AGG + chr8_2:12864618-12864637 Msa1235050:CDS 40.0%
!! CGTATTTGTCAGGTTGATGA+TGG - chr8_2:12864668-12864687 None:intergenic 40.0%
! TTGGCTTTCTCGTATTTGTC+AGG - chr8_2:12864678-12864697 None:intergenic 40.0%
ACTATCCCTTGGTGAATACT+TGG - chr8_2:12864756-12864775 None:intergenic 40.0%
TGACTTTCTCAACTATCCCT+TGG - chr8_2:12864767-12864786 None:intergenic 40.0%
AGGGATAGTTGAGAAAGTCA+AGG + chr8_2:12864767-12864786 Msa1235050:CDS 40.0%
! TCAAGGAAGCATGTGAAACT+TGG + chr8_2:12864784-12864803 Msa1235050:CDS 40.0%
! CAAGGAAGCATGTGAAACTT+GGG + chr8_2:12864785-12864804 Msa1235050:CDS 40.0%
! AAGGAAGCATGTGAAACTTG+GGG + chr8_2:12864786-12864805 Msa1235050:CDS 40.0%
AATCCCTTTGAGTGTTCTTG+AGG + chr8_2:12864833-12864852 Msa1235050:CDS 40.0%
ACTCCTCAAGAACACTCAAA+GGG - chr8_2:12864839-12864858 None:intergenic 40.0%
AACTCCTCAAGAACACTCAA+AGG - chr8_2:12864840-12864859 None:intergenic 40.0%
GTTCTTGAGGAGTTGAAAGA+TGG + chr8_2:12864846-12864865 Msa1235050:CDS 40.0%
TCTTGAGGAGTTGAAAGATG+GGG + chr8_2:12864848-12864867 Msa1235050:CDS 40.0%
AGTTGAAAGATGGGGTGAAA+AGG + chr8_2:12864856-12864875 Msa1235050:CDS 40.0%
TATCCTTCCAATTGAGTGCT+GGG - chr8_2:12864977-12864996 None:intergenic 40.0%
!! TCTTCTGGTTTGAGAGTATC+AGG - chr8_2:12865023-12865042 None:intergenic 40.0%
CATACTACAGGAAACTCTTC+TGG - chr8_2:12865038-12865057 None:intergenic 40.0%
AAGAGTTTCCTGTAGTATGC+AGG + chr8_2:12865039-12865058 Msa1235050:CDS 40.0%
! GCAGCACTGAAATTTCAGAT+TGG + chr8_2:12865120-12865139 Msa1235050:intron 40.0%
!! AATTCTGGTTCAGGACAAGA+AGG - chr8_2:12866015-12866034 None:intergenic 40.0%
GTGCTTCTTCAAGACCATAT+TGG + chr8_2:12866078-12866097 Msa1235050:CDS 40.0%
CTTCTTCAAGACCATATTGG+TGG + chr8_2:12866081-12866100 Msa1235050:CDS 40.0%
ACATTAACTATGAGAGCTCC+AGG - chr8_2:12866153-12866172 None:intergenic 40.0%
GGAGCTCTCATAGTTAATGT+TGG + chr8_2:12866153-12866172 Msa1235050:CDS 40.0%
TGCTTTGCGTTCACTGAATG+TGG - chr8_2:12864577-12864596 None:intergenic 45.0%
! ATCCTTCCAATTGAGTGCTG+GGG - chr8_2:12864976-12864995 None:intergenic 45.0%
CTATCCTTCCAATTGAGTGC+TGG - chr8_2:12864978-12864997 None:intergenic 45.0%
!! TCTGGTTTGAGAGTATCAGG+TGG - chr8_2:12865020-12865039 None:intergenic 45.0%
AAGGACTGAAATTCGCAGCA+AGG + chr8_2:12865535-12865554 Msa1235050:intron 45.0%
TCCTGAACCAGAATTGACTG+TGG + chr8_2:12866020-12866039 Msa1235050:CDS 45.0%
CCTGAACCAGAATTGACTGT+GGG + chr8_2:12866021-12866040 Msa1235050:CDS 45.0%
GTTGTTCCCACAGTCAATTC+TGG - chr8_2:12866030-12866049 None:intergenic 45.0%
TGCTTTGCGTTCACTGAATG+TGG - chr8_2:12864577-12864596 None:intergenic 45.0%
! ATCCTTCCAATTGAGTGCTG+GGG - chr8_2:12864976-12864995 None:intergenic 45.0%
CTATCCTTCCAATTGAGTGC+TGG - chr8_2:12864978-12864997 None:intergenic 45.0%
!! TCTGGTTTGAGAGTATCAGG+TGG - chr8_2:12865020-12865039 None:intergenic 45.0%
AAGGACTGAAATTCGCAGCA+AGG + chr8_2:12865535-12865554 Msa1235050:intron 45.0%
TCCTGAACCAGAATTGACTG+TGG + chr8_2:12866020-12866039 Msa1235050:CDS 45.0%
CCTGAACCAGAATTGACTGT+GGG + chr8_2:12866021-12866040 Msa1235050:CDS 45.0%
GTTGTTCCCACAGTCAATTC+TGG - chr8_2:12866030-12866049 None:intergenic 45.0%
ATAGCTCCCCAGCACTCAAT+TGG + chr8_2:12864967-12864986 Msa1235050:CDS 50.0%
!! CCCACAGTCAATTCTGGTTC+AGG - chr8_2:12866024-12866043 None:intergenic 50.0%
GAACTTGGAGGCCACCAATA+TGG - chr8_2:12866095-12866114 None:intergenic 50.0%
ACTATGAGAGCTCCAGGTAC+AGG - chr8_2:12866147-12866166 None:intergenic 50.0%
ATAGCTCCCCAGCACTCAAT+TGG + chr8_2:12864967-12864986 Msa1235050:CDS 50.0%
!! CCCACAGTCAATTCTGGTTC+AGG - chr8_2:12866024-12866043 None:intergenic 50.0%
GAACTTGGAGGCCACCAATA+TGG - chr8_2:12866095-12866114 None:intergenic 50.0%
ACTATGAGAGCTCCAGGTAC+AGG - chr8_2:12866147-12866166 None:intergenic 50.0%
CTCCCCAGCACTCAATTGGA+AGG + chr8_2:12864971-12864990 Msa1235050:CDS 55.0%
!! GGTCTTGAAGAAGCACCGTG+AGG - chr8_2:12866074-12866093 None:intergenic 55.0%
CTCCCCAGCACTCAATTGGA+AGG + chr8_2:12864971-12864990 Msa1235050:CDS 55.0%
!! GGTCTTGAAGAAGCACCGTG+AGG - chr8_2:12866074-12866093 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 12864363 12866246 12864363 ID=Msa1235050;Name=Msa1235050
chr8_2 mRNA 12864363 12866246 12864363 ID=Msa1235050-mRNA-1;Parent=Msa1235050;Name=Msa1235050-mRNA-1;_AED=0.35;_eAED=0.35;_QI=174|1|1|1|1|1|2|10|297
chr8_2 exon 12864363 12865060 12864363 ID=Msa1235050-mRNA-1:exon:4988;Parent=Msa1235050-mRNA-1
chr8_2 exon 12865867 12866246 12865867 ID=Msa1235050-mRNA-1:exon:4989;Parent=Msa1235050-mRNA-1
chr8_2 five_prime_UTR 12864363 12864536 12864363 ID=Msa1235050-mRNA-1:five_prime_utr;Parent=Msa1235050-mRNA-1
chr8_2 CDS 12864537 12865060 12864537 ID=Msa1235050-mRNA-1:cds;Parent=Msa1235050-mRNA-1
chr8_2 CDS 12865867 12866236 12865867 ID=Msa1235050-mRNA-1:cds;Parent=Msa1235050-mRNA-1
chr8_2 three_prime_UTR 12866237 12866246 12866237 ID=Msa1235050-mRNA-1:three_prime_utr;Parent=Msa1235050-mRNA-1
Gene Sequence

>Msa1235050

ATGGGAACCATTGATACAACCAAACCTAACCTTGATTCCACATTCAGTGAACGCAAAGCATTTGATGAAACAAAAGCAGGTGTAAAAGGACTTGTTGATGGAGGACTTAAGAAGATACCTGAATTATTCCATCATCAACCTGACAAATACGAGAAAGCCAACAACACAAGCAATGTTATTCCTGTCATAGACCTTGATGATATTGATAATAAAGATCCAAGTATTCACCAAGGGATAGTTGAGAAAGTCAAGGAAGCATGTGAAACTTGGGGATTTTTTCAAGTTGTCAATCATGGAATCCCTTTGAGTGTTCTTGAGGAGTTGAAAGATGGGGTGAAAAGGTTTTATGAACAAGACACAGAAGTCAAAAAAGATTTTTATACAAGAGATATCAGTAGATCATTTATTTACAATAGCAATGTTGATGTTTATAGCTCCCCAGCACTCAATTGGAAGGATAGTTTTGGTTGTAACTTGGCTCCACCTGATACTCTCAAACCAGAAGAGTTTCCTGTAGTATGCAGAGATATACTGCTACAATATGGAAAACACATGATGAATCTAGGGACTTTATTATTTGAATTGTTGTCAGAAGCTTTAGGTTTGAAACCAAACCATTTGAAAGATATGGATTGTGCTCAAGGGCTAATTGCTCTTTGCCATTATTATCCTTCTTGTCCTGAACCAGAATTGACTGTGGGAACAACAAAGCATTCTGATAATGATTTCCTCACGGTGCTTCTTCAAGACCATATTGGTGGCCTCCAAGTTCTTTATGAAGATAAATGGATTGATATAACACCTGTACCTGGAGCTCTCATAGTTAATGTTGGAGATCTTTTGCAGGCAAGTTTTTTGCATACTTATGTGTATATTTCCATAAACTATTATTAG
Protein sequence

>Msa1235050

MGTIDTTKPNLDSTFSERKAFDETKAGVKGLVDGGLKKIPELFHHQPDKYEKANNTSNVIPVIDLDDIDNKDPSIHQGIVEKVKEACETWGFFQVVNHGIPLSVLEELKDGVKRFYEQDTEVKKDFYTRDISRSFIYNSNVDVYSSPALNWKDSFGCNLAPPDTLKPEEFPVVCRDILLQYGKHMMNLGTLLFELLSEALGLKPNHLKDMDCAQGLIALCHYYPSCPEPELTVGTTKHSDNDFLTVLLQDHIGGLQVLYEDKWIDITPVPGALIVNVGDLLQASFLHTYVYISINYY*