AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1178170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178170 MtrunA17_Chr8g0349051 100.000 82 0 0 1 82 1 82 4.30e-50 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178170 AT2G45860.1 65.432 81 25 1 1 81 1 78 6.39e-11 53.5

Find 31 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCAAATTCATACAAATT+AGG 0.156463 8_1:-10832996 None:intergenic
CTTAAAATGGTATCCCTTTC+CGG 0.185449 8_1:+10831108 None:intergenic
GGGTGGTGGAAGTGGATTTA+AGG 0.234381 8_1:-10831494 Msa1178170:CDS
TCCCAAATTCATACAAATTA+GGG 0.240413 8_1:-10832995 None:intergenic
CTAATCAGACGGCCAGAAAA+AGG 0.300444 8_1:+10831075 None:intergenic
AGGACTCGTTATCCTTAAAA+TGG 0.309268 8_1:+10831095 None:intergenic
GGAAAATTTGTTTAGGTTGA+TGG 0.363350 8_1:-10831535 Msa1178170:intron
GCAATGGAGCTCGACAAATA+AGG 0.389856 8_1:-10831412 Msa1178170:exon
ATGAAATTCACCACCGGAAA+GGG 0.415538 8_1:-10831121 Msa1178170:three_prime_UTR
AATGTAACGCACGTTTGGTT+TGG 0.424655 8_1:-10831031 Msa1178170:three_prime_UTR
AGCTAAAGCTGCGCAGGCAA+TGG 0.436809 8_1:-10831428 Msa1178170:CDS
TGTTAAGTTATTTGACTATG+AGG 0.443416 8_1:-10831289 Msa1178170:three_prime_UTR
TGGTTGATTTGAGACAAAAT+TGG 0.443540 8_1:+10831214 None:intergenic
AGTCCAATGTAACGCACGTT+TGG 0.449089 8_1:-10831036 Msa1178170:three_prime_UTR
ATCTATTAATTTCACTGCAT+CGG 0.452439 8_1:+10831353 None:intergenic
AAACCAAACGTGCGTTACAT+TGG 0.503848 8_1:+10831033 None:intergenic
TTTCGACAGGGCTGACAACC+TGG 0.508262 8_1:+10831450 None:intergenic
GTCGAAAGCTAAAGCTGCGC+AGG 0.513870 8_1:-10831434 Msa1178170:CDS
CGCAGCTTTAGCTTTCGACA+GGG 0.523634 8_1:+10831438 None:intergenic
TAATTTCACTGCATCGGCAT+CGG 0.526109 8_1:+10831359 None:intergenic
TGGTGGAAGTGGATTTAAGG+TGG 0.555596 8_1:-10831491 Msa1178170:CDS
CAATGTCTAAATAAATGTGT+TGG 0.566363 8_1:-10831001 Msa1178170:three_prime_UTR
TAATATATTGTCTAATCAGA+CGG 0.571590 8_1:+10831064 None:intergenic
GGTGGAAGTGGATTTAAGGT+GGG 0.573086 8_1:-10831490 Msa1178170:CDS
ACAAATAAGGCGTCATTGTG+AGG 0.578453 8_1:-10831399 Msa1178170:exon
GTTGTCTCTTTCTCTTAGCG+AGG 0.589204 8_1:+10832909 None:intergenic
CACAGAATGAAATTCACCAC+CGG 0.607378 8_1:-10831127 Msa1178170:three_prime_UTR
AATGAAATTCACCACCGGAA+AGG 0.615913 8_1:-10831122 Msa1178170:three_prime_UTR
GAAAGAAATATCTGAAGACC+AGG 0.618159 8_1:-10831468 Msa1178170:CDS
TAGATGACATAGCTGTTCTG+AGG 0.624077 8_1:-10831335 Msa1178170:three_prime_UTR
AAAATGGTATCCCTTTCCGG+TGG 0.682021 8_1:+10831111 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAAATTAGAAAATT+AGG + chr8_1:10831157-10831176 None:intergenic 10.0%
!!! TTTTGTTTTTTAAATGATAT+TGG - chr8_1:10831493-10831512 Msa1178170:CDS 10.0%
!! AAATGAAAAATTAGAAAATT+AGG + chr8_1:10831157-10831176 None:intergenic 10.0%
!!! TTTTGTTTTTTAAATGATAT+TGG - chr8_1:10831493-10831512 Msa1178170:CDS 10.0%
!!! ATTAACTCTAAAACAAATAT+CGG + chr8_1:10831532-10831551 None:intergenic 15.0%
!!! TTTTATATTATTGAGATTGT+GGG - chr8_1:10831579-10831598 Msa1178170:intron 15.0%
!! ATCTATGAAAATAAAAGTAA+TGG - chr8_1:10831790-10831809 Msa1178170:intron 15.0%
!!! AGATATAAATAAAAAGTACA+TGG + chr8_1:10832794-10832813 None:intergenic 15.0%
!!! ATTAACTCTAAAACAAATAT+CGG + chr8_1:10831532-10831551 None:intergenic 15.0%
!!! TTTTATATTATTGAGATTGT+GGG - chr8_1:10831579-10831598 Msa1178170:intron 15.0%
!! ATCTATGAAAATAAAAGTAA+TGG - chr8_1:10831790-10831809 Msa1178170:intron 15.0%
!!! AGATATAAATAAAAAGTACA+TGG + chr8_1:10832794-10832813 None:intergenic 15.0%
!!! AGAAAATTAGGTTTGAAATT+GGG + chr8_1:10831145-10831164 None:intergenic 20.0%
!!! TAGAAAATTAGGTTTGAAAT+TGG + chr8_1:10831146-10831165 None:intergenic 20.0%
!!! TTTTTGTAATGATTTCTTTC+AGG - chr8_1:10831187-10831206 Msa1178170:three_prime_UTR 20.0%
!!! AAAAAGATAGTGTATGATTT+TGG - chr8_1:10831308-10831327 Msa1178170:three_prime_UTR 20.0%
!!! AAAAGATAGTGTATGATTTT+GGG - chr8_1:10831309-10831328 Msa1178170:three_prime_UTR 20.0%
!!! TTGTGAACTTTTTGTTTAAT+GGG - chr8_1:10831376-10831395 Msa1178170:three_prime_UTR 20.0%
!!! TTTTTGTTTAATGGGATAAT+GGG - chr8_1:10831384-10831403 Msa1178170:three_prime_UTR 20.0%
!! GTTAATTGATGAACATAAAT+TGG - chr8_1:10831464-10831483 Msa1178170:CDS 20.0%
!! AATATAAAAGTTCACAACTT+TGG + chr8_1:10831568-10831587 None:intergenic 20.0%
!!! CTTTTATATTATTGAGATTG+TGG - chr8_1:10831578-10831597 Msa1178170:intron 20.0%
!! TATTTATAGAGTAGGTTTAA+AGG - chr8_1:10832057-10832076 Msa1178170:intron 20.0%
!! ATATTAGATTTAAACTTGGA+AGG - chr8_1:10832334-10832353 Msa1178170:intron 20.0%
!! TAATATATTGTCTAATCAGA+CGG + chr8_1:10832924-10832943 None:intergenic 20.0%
!!! AGAAAATTAGGTTTGAAATT+GGG + chr8_1:10831145-10831164 None:intergenic 20.0%
!!! TAGAAAATTAGGTTTGAAAT+TGG + chr8_1:10831146-10831165 None:intergenic 20.0%
!!! TTTTTGTAATGATTTCTTTC+AGG - chr8_1:10831187-10831206 Msa1178170:three_prime_UTR 20.0%
!!! AAAAAGATAGTGTATGATTT+TGG - chr8_1:10831308-10831327 Msa1178170:three_prime_UTR 20.0%
!!! AAAAGATAGTGTATGATTTT+GGG - chr8_1:10831309-10831328 Msa1178170:three_prime_UTR 20.0%
!!! TTGTGAACTTTTTGTTTAAT+GGG - chr8_1:10831376-10831395 Msa1178170:three_prime_UTR 20.0%
!!! TTTTTGTTTAATGGGATAAT+GGG - chr8_1:10831384-10831403 Msa1178170:three_prime_UTR 20.0%
!! GTTAATTGATGAACATAAAT+TGG - chr8_1:10831464-10831483 Msa1178170:CDS 20.0%
!! AATATAAAAGTTCACAACTT+TGG + chr8_1:10831568-10831587 None:intergenic 20.0%
!!! CTTTTATATTATTGAGATTG+TGG - chr8_1:10831578-10831597 Msa1178170:intron 20.0%
!! TATTTATAGAGTAGGTTTAA+AGG - chr8_1:10832057-10832076 Msa1178170:intron 20.0%
!! ATATTAGATTTAAACTTGGA+AGG - chr8_1:10832334-10832353 Msa1178170:intron 20.0%
!! TAATATATTGTCTAATCAGA+CGG + chr8_1:10832924-10832943 None:intergenic 20.0%
!! AAAATTAGGTTTGAAATTGG+GGG + chr8_1:10831143-10831162 None:intergenic 25.0%
!! GAAAATTAGGTTTGAAATTG+GGG + chr8_1:10831144-10831163 None:intergenic 25.0%
! AAACAAAAAGTTCACAACTT+TGG + chr8_1:10831373-10831392 None:intergenic 25.0%
!!! GTTGTGAACTTTTTGTTTAA+TGG - chr8_1:10831375-10831394 Msa1178170:three_prime_UTR 25.0%
!!! CTTTTTGTTTAATGGGATAA+TGG - chr8_1:10831383-10831402 Msa1178170:three_prime_UTR 25.0%
! TTAAATGATATTGGTGAGTT+TGG - chr8_1:10831502-10831521 Msa1178170:CDS 25.0%
! TAAATGATATTGGTGAGTTT+GGG - chr8_1:10831503-10831522 Msa1178170:CDS 25.0%
!!! GTCAACTATAATCTACTTTT+TGG - chr8_1:10831601-10831620 Msa1178170:intron 25.0%
!! CAAATTCAACACCTAATTTT+CGG + chr8_1:10831665-10831684 None:intergenic 25.0%
!!! GATTGAAAGTGTTTTGATAT+GGG + chr8_1:10832252-10832271 None:intergenic 25.0%
!!! AGATTGAAAGTGTTTTGATA+TGG + chr8_1:10832253-10832272 None:intergenic 25.0%
! AAAACACTTTCAATCTAAAG+TGG - chr8_1:10832257-10832276 Msa1178170:intron 25.0%
! CTGGATATTAGATTTAAACT+TGG - chr8_1:10832330-10832349 Msa1178170:intron 25.0%
!!! TTTTGCTGGAAAATTTGTTT+AGG - chr8_1:10832443-10832462 Msa1178170:intron 25.0%
! ATCTATTAATTTCACTGCAT+CGG + chr8_1:10832635-10832654 None:intergenic 25.0%
! TGTTAAGTTATTTGACTATG+AGG - chr8_1:10832696-10832715 Msa1178170:intron 25.0%
!! ATTGATGAAATTTTACATGC+TGG - chr8_1:10832822-10832841 Msa1178170:intron 25.0%
! CAATGTCTAAATAAATGTGT+TGG - chr8_1:10832984-10833003 Msa1178170:five_prime_UTR 25.0%
!! AAAATTAGGTTTGAAATTGG+GGG + chr8_1:10831143-10831162 None:intergenic 25.0%
!! GAAAATTAGGTTTGAAATTG+GGG + chr8_1:10831144-10831163 None:intergenic 25.0%
! AAACAAAAAGTTCACAACTT+TGG + chr8_1:10831373-10831392 None:intergenic 25.0%
!!! GTTGTGAACTTTTTGTTTAA+TGG - chr8_1:10831375-10831394 Msa1178170:three_prime_UTR 25.0%
!!! CTTTTTGTTTAATGGGATAA+TGG - chr8_1:10831383-10831402 Msa1178170:three_prime_UTR 25.0%
! TTAAATGATATTGGTGAGTT+TGG - chr8_1:10831502-10831521 Msa1178170:CDS 25.0%
! TAAATGATATTGGTGAGTTT+GGG - chr8_1:10831503-10831522 Msa1178170:CDS 25.0%
!!! GTCAACTATAATCTACTTTT+TGG - chr8_1:10831601-10831620 Msa1178170:intron 25.0%
!! CAAATTCAACACCTAATTTT+CGG + chr8_1:10831665-10831684 None:intergenic 25.0%
!!! GATTGAAAGTGTTTTGATAT+GGG + chr8_1:10832252-10832271 None:intergenic 25.0%
!!! AGATTGAAAGTGTTTTGATA+TGG + chr8_1:10832253-10832272 None:intergenic 25.0%
! AAAACACTTTCAATCTAAAG+TGG - chr8_1:10832257-10832276 Msa1178170:intron 25.0%
! CTGGATATTAGATTTAAACT+TGG - chr8_1:10832330-10832349 Msa1178170:intron 25.0%
!!! TTTTGCTGGAAAATTTGTTT+AGG - chr8_1:10832443-10832462 Msa1178170:intron 25.0%
! ATCTATTAATTTCACTGCAT+CGG + chr8_1:10832635-10832654 None:intergenic 25.0%
! TGTTAAGTTATTTGACTATG+AGG - chr8_1:10832696-10832715 Msa1178170:intron 25.0%
!! ATTGATGAAATTTTACATGC+TGG - chr8_1:10832822-10832841 Msa1178170:intron 25.0%
GTTTATAGTAGCCGAAAATT+AGG - chr8_1:10831651-10831670 Msa1178170:intron 30.0%
AGTGGAATGATAAGTATATG+TGG - chr8_1:10831995-10832014 Msa1178170:intron 30.0%
GTGGAATGATAAGTATATGT+GGG - chr8_1:10831996-10832015 Msa1178170:intron 30.0%
ACTCTATAAATACTAGCTCA+TGG + chr8_1:10832049-10832068 None:intergenic 30.0%
TGAGCTAGTATTTATAGAGT+AGG - chr8_1:10832049-10832068 Msa1178170:intron 30.0%
! TAGAGTAGGTTTAAAGGTTT+TGG - chr8_1:10832063-10832082 Msa1178170:intron 30.0%
!!! TTGTATGGTTTTGTTTTTGC+TGG - chr8_1:10832429-10832448 Msa1178170:intron 30.0%
!! GGAAAATTTGTTTAGGTTGA+TGG - chr8_1:10832450-10832469 Msa1178170:intron 30.0%
!! TGGTTGATTTGAGACAAAAT+TGG + chr8_1:10832774-10832793 None:intergenic 30.0%
GTTTATAGTAGCCGAAAATT+AGG - chr8_1:10831651-10831670 Msa1178170:intron 30.0%
AGTGGAATGATAAGTATATG+TGG - chr8_1:10831995-10832014 Msa1178170:intron 30.0%
GTGGAATGATAAGTATATGT+GGG - chr8_1:10831996-10832015 Msa1178170:intron 30.0%
ACTCTATAAATACTAGCTCA+TGG + chr8_1:10832049-10832068 None:intergenic 30.0%
TGAGCTAGTATTTATAGAGT+AGG - chr8_1:10832049-10832068 Msa1178170:intron 30.0%
! TAGAGTAGGTTTAAAGGTTT+TGG - chr8_1:10832063-10832082 Msa1178170:intron 30.0%
!!! TTGTATGGTTTTGTTTTTGC+TGG - chr8_1:10832429-10832448 Msa1178170:intron 30.0%
!! GGAAAATTTGTTTAGGTTGA+TGG - chr8_1:10832450-10832469 Msa1178170:intron 30.0%
!! TGGTTGATTTGAGACAAAAT+TGG + chr8_1:10832774-10832793 None:intergenic 30.0%
TTCAGGAGAAAAACTTGAGA+AGG - chr8_1:10831204-10831223 Msa1178170:three_prime_UTR 35.0%
!!! TCATCTTGTTTTTCTTCGCT+TGG + chr8_1:10831249-10831268 None:intergenic 35.0%
!! CTAACTTTTCAGGGAGATTA+TGG + chr8_1:10831414-10831433 None:intergenic 35.0%
! CAAACACTGCTAACTTTTCA+GGG + chr8_1:10831423-10831442 None:intergenic 35.0%
! TCAAACACTGCTAACTTTTC+AGG + chr8_1:10831424-10831443 None:intergenic 35.0%
AATACTAGCTCATGGACATT+AGG + chr8_1:10832041-10832060 None:intergenic 35.0%
! ACACTTTCAATCTAAAGTGG+CGG - chr8_1:10832260-10832279 Msa1178170:intron 35.0%
CAACCACACACATAATATGT+AGG + chr8_1:10832299-10832318 None:intergenic 35.0%
ACTGAAAGTTGAGATTAGAG+AGG - chr8_1:10832360-10832379 Msa1178170:intron 35.0%
GTGTGTATCTTGAGGATTAA+TGG - chr8_1:10832406-10832425 Msa1178170:intron 35.0%
CTTGAGGATTAATGGTTGTA+TGG - chr8_1:10832414-10832433 Msa1178170:intron 35.0%
! TGGTAGTGACAAGAAAAAGA+AGG - chr8_1:10832470-10832489 Msa1178170:intron 35.0%
GGTAGTGACAAGAAAAAGAA+GGG - chr8_1:10832471-10832490 Msa1178170:intron 35.0%
GAAAGAAATATCTGAAGACC+AGG - chr8_1:10832517-10832536 Msa1178170:intron 35.0%
CTTAAAATGGTATCCCTTTC+CGG + chr8_1:10832880-10832899 None:intergenic 35.0%
AGGACTCGTTATCCTTAAAA+TGG + chr8_1:10832893-10832912 None:intergenic 35.0%
TTCAGGAGAAAAACTTGAGA+AGG - chr8_1:10831204-10831223 Msa1178170:three_prime_UTR 35.0%
!!! TCATCTTGTTTTTCTTCGCT+TGG + chr8_1:10831249-10831268 None:intergenic 35.0%
!! CTAACTTTTCAGGGAGATTA+TGG + chr8_1:10831414-10831433 None:intergenic 35.0%
! CAAACACTGCTAACTTTTCA+GGG + chr8_1:10831423-10831442 None:intergenic 35.0%
! TCAAACACTGCTAACTTTTC+AGG + chr8_1:10831424-10831443 None:intergenic 35.0%
AATACTAGCTCATGGACATT+AGG + chr8_1:10832041-10832060 None:intergenic 35.0%
! ACACTTTCAATCTAAAGTGG+CGG - chr8_1:10832260-10832279 Msa1178170:intron 35.0%
CAACCACACACATAATATGT+AGG + chr8_1:10832299-10832318 None:intergenic 35.0%
ACTGAAAGTTGAGATTAGAG+AGG - chr8_1:10832360-10832379 Msa1178170:intron 35.0%
GTGTGTATCTTGAGGATTAA+TGG - chr8_1:10832406-10832425 Msa1178170:intron 35.0%
CTTGAGGATTAATGGTTGTA+TGG - chr8_1:10832414-10832433 Msa1178170:intron 35.0%
! TGGTAGTGACAAGAAAAAGA+AGG - chr8_1:10832470-10832489 Msa1178170:intron 35.0%
GGTAGTGACAAGAAAAAGAA+GGG - chr8_1:10832471-10832490 Msa1178170:intron 35.0%
GAAAGAAATATCTGAAGACC+AGG - chr8_1:10832517-10832536 Msa1178170:intron 35.0%
CTTAAAATGGTATCCCTTTC+CGG + chr8_1:10832880-10832899 None:intergenic 35.0%
AGGACTCGTTATCCTTAAAA+TGG + chr8_1:10832893-10832912 None:intergenic 35.0%
! GTTGTCCAAGTAAAGGTACA+GGG + chr8_1:10832090-10832109 None:intergenic 40.0%
! AGTTGTCCAAGTAAAGGTAC+AGG + chr8_1:10832091-10832110 None:intergenic 40.0%
ACTCACAGTTGTCCAAGTAA+AGG + chr8_1:10832097-10832116 None:intergenic 40.0%
TAAACAGATAACCTGGTCTG+TGG + chr8_1:10832145-10832164 None:intergenic 40.0%
GTGCCTACATATTATGTGTG+TGG - chr8_1:10832293-10832312 Msa1178170:intron 40.0%
TGTGGTTGTGCAATAAAAGC+TGG - chr8_1:10832311-10832330 Msa1178170:intron 40.0%
AGTGACAAGAAAAAGAAGGG+TGG - chr8_1:10832474-10832493 Msa1178170:intron 40.0%
! ACAAATAAGGCGTCATTGTG+AGG - chr8_1:10832586-10832605 Msa1178170:intron 40.0%
! TAATTTCACTGCATCGGCAT+CGG + chr8_1:10832629-10832648 None:intergenic 40.0%
TAGATGACATAGCTGTTCTG+AGG - chr8_1:10832650-10832669 Msa1178170:intron 40.0%
CACAGAATGAAATTCACCAC+CGG - chr8_1:10832858-10832877 Msa1178170:intron 40.0%
AATGAAATTCACCACCGGAA+AGG - chr8_1:10832863-10832882 Msa1178170:intron 40.0%
ATGAAATTCACCACCGGAAA+GGG - chr8_1:10832864-10832883 Msa1178170:intron 40.0%
! CGGAAAGGGATACCATTTTA+AGG - chr8_1:10832878-10832897 Msa1178170:intron 40.0%
! AGGATAACGAGTCCTTTTTC+TGG - chr8_1:10832898-10832917 Msa1178170:CDS 40.0%
AAACCAAACGTGCGTTACAT+TGG + chr8_1:10832955-10832974 None:intergenic 40.0%
AATGTAACGCACGTTTGGTT+TGG - chr8_1:10832954-10832973 Msa1178170:five_prime_UTR 40.0%
! GTTGTCCAAGTAAAGGTACA+GGG + chr8_1:10832090-10832109 None:intergenic 40.0%
! AGTTGTCCAAGTAAAGGTAC+AGG + chr8_1:10832091-10832110 None:intergenic 40.0%
ACTCACAGTTGTCCAAGTAA+AGG + chr8_1:10832097-10832116 None:intergenic 40.0%
TAAACAGATAACCTGGTCTG+TGG + chr8_1:10832145-10832164 None:intergenic 40.0%
GTGCCTACATATTATGTGTG+TGG - chr8_1:10832293-10832312 Msa1178170:intron 40.0%
TGTGGTTGTGCAATAAAAGC+TGG - chr8_1:10832311-10832330 Msa1178170:intron 40.0%
AGTGACAAGAAAAAGAAGGG+TGG - chr8_1:10832474-10832493 Msa1178170:intron 40.0%
! ACAAATAAGGCGTCATTGTG+AGG - chr8_1:10832586-10832605 Msa1178170:intron 40.0%
! TAATTTCACTGCATCGGCAT+CGG + chr8_1:10832629-10832648 None:intergenic 40.0%
TAGATGACATAGCTGTTCTG+AGG - chr8_1:10832650-10832669 Msa1178170:intron 40.0%
CACAGAATGAAATTCACCAC+CGG - chr8_1:10832858-10832877 Msa1178170:intron 40.0%
AATGAAATTCACCACCGGAA+AGG - chr8_1:10832863-10832882 Msa1178170:intron 40.0%
ATGAAATTCACCACCGGAAA+GGG - chr8_1:10832864-10832883 Msa1178170:intron 40.0%
! CGGAAAGGGATACCATTTTA+AGG - chr8_1:10832878-10832897 Msa1178170:intron 40.0%
! AGGATAACGAGTCCTTTTTC+TGG - chr8_1:10832898-10832917 Msa1178170:CDS 40.0%
AAACCAAACGTGCGTTACAT+TGG + chr8_1:10832955-10832974 None:intergenic 40.0%
AATGTAACGCACGTTTGGTT+TGG - chr8_1:10832954-10832973 Msa1178170:five_prime_UTR 40.0%
GTTGTCTCTTTCTCTTAGCG+AGG + chr8_1:10831079-10831098 None:intergenic 45.0%
! TCGAAGGTGAGAGTGTACTT+CGG + chr8_1:10831115-10831134 None:intergenic 45.0%
GAAATTGGGGGCAAAATCGA+AGG + chr8_1:10831131-10831150 None:intergenic 45.0%
!! TGGCAGGATTAGAAAGTGTC+TGG + chr8_1:10831845-10831864 None:intergenic 45.0%
CATTGAATGGCCTCTGAGTA+GGG - chr8_1:10831888-10831907 Msa1178170:intron 45.0%
CTTCTTCTTTGGGCGAATGA+GGG - chr8_1:10831930-10831949 Msa1178170:intron 45.0%
TAGCTCATGGACATTAGGTC+AGG + chr8_1:10832036-10832055 None:intergenic 45.0%
TTGGTCCCTGTACCTTTACT+TGG - chr8_1:10832082-10832101 Msa1178170:intron 45.0%
ACTAATCTCTCAAGGGACCA+GGG + chr8_1:10832121-10832140 None:intergenic 45.0%
CTGTGGCACTAATCTCTCAA+GGG + chr8_1:10832128-10832147 None:intergenic 45.0%
TCTGTGGCACTAATCTCTCA+AGG + chr8_1:10832129-10832148 None:intergenic 45.0%
CCAAGCGTAAACAGATAACC+TGG + chr8_1:10832152-10832171 None:intergenic 45.0%
CCAGGTTATCTGTTTACGCT+TGG - chr8_1:10832149-10832168 Msa1178170:intron 45.0%
TCCTCGCACAAGGAATCATT+GGG + chr8_1:10832196-10832215 None:intergenic 45.0%
GACCACATGTATGTCCCAAA+GGG + chr8_1:10832220-10832239 None:intergenic 45.0%
TGACCACATGTATGTCCCAA+AGG + chr8_1:10832221-10832240 None:intergenic 45.0%
! TTTGGGACATACATGTGGTC+AGG - chr8_1:10832220-10832239 Msa1178170:intron 45.0%
CTAAAGTGGCGGTGATTCAT+AGG - chr8_1:10832271-10832290 Msa1178170:intron 45.0%
GTGTGAGTGTGTGTATCTTG+AGG - chr8_1:10832398-10832417 Msa1178170:intron 45.0%
GACAAGAAAAAGAAGGGTGG+TGG - chr8_1:10832477-10832496 Msa1178170:intron 45.0%
!! AAAAAGAAGGGTGGTGGAAG+TGG - chr8_1:10832483-10832502 Msa1178170:intron 45.0%
! TGGTGGAAGTGGATTTAAGG+TGG - chr8_1:10832494-10832513 Msa1178170:intron 45.0%
! GGTGGAAGTGGATTTAAGGT+GGG - chr8_1:10832495-10832514 Msa1178170:intron 45.0%
GCAATGGAGCTCGACAAATA+AGG - chr8_1:10832573-10832592 Msa1178170:intron 45.0%
AAAATGGTATCCCTTTCCGG+TGG + chr8_1:10832877-10832896 None:intergenic 45.0%
CTAATCAGACGGCCAGAAAA+AGG + chr8_1:10832913-10832932 None:intergenic 45.0%
AGTCCAATGTAACGCACGTT+TGG - chr8_1:10832949-10832968 Msa1178170:five_prime_UTR 45.0%
GTTGTCTCTTTCTCTTAGCG+AGG + chr8_1:10831079-10831098 None:intergenic 45.0%
! TCGAAGGTGAGAGTGTACTT+CGG + chr8_1:10831115-10831134 None:intergenic 45.0%
GAAATTGGGGGCAAAATCGA+AGG + chr8_1:10831131-10831150 None:intergenic 45.0%
!! TGGCAGGATTAGAAAGTGTC+TGG + chr8_1:10831845-10831864 None:intergenic 45.0%
CATTGAATGGCCTCTGAGTA+GGG - chr8_1:10831888-10831907 Msa1178170:intron 45.0%
CTTCTTCTTTGGGCGAATGA+GGG - chr8_1:10831930-10831949 Msa1178170:intron 45.0%
TAGCTCATGGACATTAGGTC+AGG + chr8_1:10832036-10832055 None:intergenic 45.0%
TTGGTCCCTGTACCTTTACT+TGG - chr8_1:10832082-10832101 Msa1178170:intron 45.0%
ACTAATCTCTCAAGGGACCA+GGG + chr8_1:10832121-10832140 None:intergenic 45.0%
CTGTGGCACTAATCTCTCAA+GGG + chr8_1:10832128-10832147 None:intergenic 45.0%
TCTGTGGCACTAATCTCTCA+AGG + chr8_1:10832129-10832148 None:intergenic 45.0%
CCAAGCGTAAACAGATAACC+TGG + chr8_1:10832152-10832171 None:intergenic 45.0%
CCAGGTTATCTGTTTACGCT+TGG - chr8_1:10832149-10832168 Msa1178170:intron 45.0%
TCCTCGCACAAGGAATCATT+GGG + chr8_1:10832196-10832215 None:intergenic 45.0%
GACCACATGTATGTCCCAAA+GGG + chr8_1:10832220-10832239 None:intergenic 45.0%
TGACCACATGTATGTCCCAA+AGG + chr8_1:10832221-10832240 None:intergenic 45.0%
! TTTGGGACATACATGTGGTC+AGG - chr8_1:10832220-10832239 Msa1178170:intron 45.0%
CTAAAGTGGCGGTGATTCAT+AGG - chr8_1:10832271-10832290 Msa1178170:intron 45.0%
GTGTGAGTGTGTGTATCTTG+AGG - chr8_1:10832398-10832417 Msa1178170:intron 45.0%
GACAAGAAAAAGAAGGGTGG+TGG - chr8_1:10832477-10832496 Msa1178170:intron 45.0%
!! AAAAAGAAGGGTGGTGGAAG+TGG - chr8_1:10832483-10832502 Msa1178170:intron 45.0%
! TGGTGGAAGTGGATTTAAGG+TGG - chr8_1:10832494-10832513 Msa1178170:intron 45.0%
! GGTGGAAGTGGATTTAAGGT+GGG - chr8_1:10832495-10832514 Msa1178170:intron 45.0%
GCAATGGAGCTCGACAAATA+AGG - chr8_1:10832573-10832592 Msa1178170:intron 45.0%
AAAATGGTATCCCTTTCCGG+TGG + chr8_1:10832877-10832896 None:intergenic 45.0%
CTAATCAGACGGCCAGAAAA+AGG + chr8_1:10832913-10832932 None:intergenic 45.0%
AGTCCAATGTAACGCACGTT+TGG - chr8_1:10832949-10832968 Msa1178170:five_prime_UTR 45.0%
CTGCCAGACTTGAGATCCTT+GGG - chr8_1:10831859-10831878 Msa1178170:intron 50.0%
ACACCCAAGGATCTCAAGTC+TGG + chr8_1:10831865-10831884 None:intergenic 50.0%
GACTTGAGATCCTTGGGTGT+TGG - chr8_1:10831865-10831884 Msa1178170:intron 50.0%
CCATTCAATGCCAACACCCA+AGG + chr8_1:10831878-10831897 None:intergenic 50.0%
!! CCTTGGGTGTTGGCATTGAA+TGG - chr8_1:10831875-10831894 Msa1178170:intron 50.0%
GCATTGAATGGCCTCTGAGT+AGG - chr8_1:10831887-10831906 Msa1178170:intron 50.0%
AAGAAGAAGGCTGCAGTCGA+CGG + chr8_1:10831919-10831938 None:intergenic 50.0%
TCGACTGCAGCCTTCTTCTT+TGG - chr8_1:10831919-10831938 Msa1178170:intron 50.0%
CGACTGCAGCCTTCTTCTTT+GGG - chr8_1:10831920-10831939 Msa1178170:intron 50.0%
CCTCATTCGCCCAAAGAAGA+AGG + chr8_1:10831932-10831951 None:intergenic 50.0%
CCTTCTTCTTTGGGCGAATG+AGG - chr8_1:10831929-10831948 Msa1178170:intron 50.0%
! GCGCTTGCTAACTAGACTGT+TGG + chr8_1:10831975-10831994 None:intergenic 50.0%
AGTCTAGTTAGCAAGCGCAG+TGG - chr8_1:10831977-10831996 Msa1178170:intron 50.0%
CACTAATCTCTCAAGGGACC+AGG + chr8_1:10832122-10832141 None:intergenic 50.0%
AGAGATTAGTGCCACAGACC+AGG - chr8_1:10832131-10832150 Msa1178170:intron 50.0%
TTTACGCTTGGCCTCATGTG+CGG - chr8_1:10832161-10832180 Msa1178170:intron 50.0%
CCTCGCACAAGGAATCATTG+GGG + chr8_1:10832195-10832214 None:intergenic 50.0%
CTCCTCGCACAAGGAATCAT+TGG + chr8_1:10832197-10832216 None:intergenic 50.0%
!! AGCCCTTTGGGACATACATG+TGG - chr8_1:10832215-10832234 Msa1178170:intron 50.0%
ACATACATGTGGTCAGGCGT+TGG - chr8_1:10832226-10832245 Msa1178170:intron 50.0%
!! GGGTGGTGGAAGTGGATTTA+AGG - chr8_1:10832491-10832510 Msa1178170:intron 50.0%
!! CGCAGCTTTAGCTTTCGACA+GGG + chr8_1:10832550-10832569 None:intergenic 50.0%
CTGCCAGACTTGAGATCCTT+GGG - chr8_1:10831859-10831878 Msa1178170:intron 50.0%
ACACCCAAGGATCTCAAGTC+TGG + chr8_1:10831865-10831884 None:intergenic 50.0%
GACTTGAGATCCTTGGGTGT+TGG - chr8_1:10831865-10831884 Msa1178170:intron 50.0%
CCATTCAATGCCAACACCCA+AGG + chr8_1:10831878-10831897 None:intergenic 50.0%
!! CCTTGGGTGTTGGCATTGAA+TGG - chr8_1:10831875-10831894 Msa1178170:intron 50.0%
GCATTGAATGGCCTCTGAGT+AGG - chr8_1:10831887-10831906 Msa1178170:intron 50.0%
AAGAAGAAGGCTGCAGTCGA+CGG + chr8_1:10831919-10831938 None:intergenic 50.0%
TCGACTGCAGCCTTCTTCTT+TGG - chr8_1:10831919-10831938 Msa1178170:intron 50.0%
CGACTGCAGCCTTCTTCTTT+GGG - chr8_1:10831920-10831939 Msa1178170:intron 50.0%
CCTCATTCGCCCAAAGAAGA+AGG + chr8_1:10831932-10831951 None:intergenic 50.0%
CCTTCTTCTTTGGGCGAATG+AGG - chr8_1:10831929-10831948 Msa1178170:intron 50.0%
! GCGCTTGCTAACTAGACTGT+TGG + chr8_1:10831975-10831994 None:intergenic 50.0%
AGTCTAGTTAGCAAGCGCAG+TGG - chr8_1:10831977-10831996 Msa1178170:intron 50.0%
CACTAATCTCTCAAGGGACC+AGG + chr8_1:10832122-10832141 None:intergenic 50.0%
AGAGATTAGTGCCACAGACC+AGG - chr8_1:10832131-10832150 Msa1178170:intron 50.0%
TTTACGCTTGGCCTCATGTG+CGG - chr8_1:10832161-10832180 Msa1178170:intron 50.0%
CCTCGCACAAGGAATCATTG+GGG + chr8_1:10832195-10832214 None:intergenic 50.0%
CTCCTCGCACAAGGAATCAT+TGG + chr8_1:10832197-10832216 None:intergenic 50.0%
!! AGCCCTTTGGGACATACATG+TGG - chr8_1:10832215-10832234 Msa1178170:intron 50.0%
ACATACATGTGGTCAGGCGT+TGG - chr8_1:10832226-10832245 Msa1178170:intron 50.0%
!! GGGTGGTGGAAGTGGATTTA+AGG - chr8_1:10832491-10832510 Msa1178170:intron 50.0%
!! CGCAGCTTTAGCTTTCGACA+GGG + chr8_1:10832550-10832569 None:intergenic 50.0%
CCAAGGATCTCAAGTCTGGC+AGG + chr8_1:10831861-10831880 None:intergenic 55.0%
CCTGCCAGACTTGAGATCCT+TGG - chr8_1:10831858-10831877 Msa1178170:intron 55.0%
TTGGACAACTGTGAGTGCCC+TGG - chr8_1:10832101-10832120 Msa1178170:intron 55.0%
GGGTTGTGATACCGCACATG+AGG + chr8_1:10832175-10832194 None:intergenic 55.0%
CCCCAATGATTCCTTGTGCG+AGG - chr8_1:10832192-10832211 Msa1178170:intron 55.0%
TTTCGACAGGGCTGACAACC+TGG + chr8_1:10832538-10832557 None:intergenic 55.0%
!! GCGCAGCTTTAGCTTTCGAC+AGG + chr8_1:10832551-10832570 None:intergenic 55.0%
GTCGAAAGCTAAAGCTGCGC+AGG - chr8_1:10832551-10832570 Msa1178170:intron 55.0%
AGCTAAAGCTGCGCAGGCAA+TGG - chr8_1:10832557-10832576 Msa1178170:intron 55.0%
CCAAGGATCTCAAGTCTGGC+AGG + chr8_1:10831861-10831880 None:intergenic 55.0%
CCTGCCAGACTTGAGATCCT+TGG - chr8_1:10831858-10831877 Msa1178170:intron 55.0%
TTGGACAACTGTGAGTGCCC+TGG - chr8_1:10832101-10832120 Msa1178170:intron 55.0%
GGGTTGTGATACCGCACATG+AGG + chr8_1:10832175-10832194 None:intergenic 55.0%
CCCCAATGATTCCTTGTGCG+AGG - chr8_1:10832192-10832211 Msa1178170:intron 55.0%
TTTCGACAGGGCTGACAACC+TGG + chr8_1:10832538-10832557 None:intergenic 55.0%
!! GCGCAGCTTTAGCTTTCGAC+AGG + chr8_1:10832551-10832570 None:intergenic 55.0%
GTCGAAAGCTAAAGCTGCGC+AGG - chr8_1:10832551-10832570 Msa1178170:intron 55.0%
AGCTAAAGCTGCGCAGGCAA+TGG - chr8_1:10832557-10832576 Msa1178170:intron 55.0%
AAGAAGGCTGCAGTCGACGG+AGG + chr8_1:10831916-10831935 None:intergenic 60.0%
TCCTTGTGCGAGGAGCCCTT+TGG - chr8_1:10832202-10832221 Msa1178170:intron 60.0%
CCTTGTGCGAGGAGCCCTTT+GGG - chr8_1:10832203-10832222 Msa1178170:intron 60.0%
AAGAAGGCTGCAGTCGACGG+AGG + chr8_1:10831916-10831935 None:intergenic 60.0%
TCCTTGTGCGAGGAGCCCTT+TGG - chr8_1:10832202-10832221 Msa1178170:intron 60.0%
CCTTGTGCGAGGAGCCCTTT+GGG - chr8_1:10832203-10832222 Msa1178170:intron 60.0%
!! GACGGAGGTGCCCTACTCAG+AGG + chr8_1:10831901-10831920 None:intergenic 65.0%
CCCAAAGGGCTCCTCGCACA+AGG + chr8_1:10832206-10832225 None:intergenic 65.0%
!! GACGGAGGTGCCCTACTCAG+AGG + chr8_1:10831901-10831920 None:intergenic 65.0%
CCCAAAGGGCTCCTCGCACA+AGG + chr8_1:10832206-10832225 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 10831001 10833006 10831001 ID=Msa1178170;Name=Msa1178170
chr8_1 mRNA 10831001 10833006 10831001 ID=Msa1178170-mRNA-1;Parent=Msa1178170;Name=Msa1178170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=58|1|1|1|1|1|3|413|82
chr8_1 exon 10831001 10831542 10831001 ID=Msa1178170-mRNA-1:exon:3784;Parent=Msa1178170-mRNA-1
chr8_1 exon 10832737 10832798 10832737 ID=Msa1178170-mRNA-1:exon:3783;Parent=Msa1178170-mRNA-1
chr8_1 exon 10832891 10833006 10832891 ID=Msa1178170-mRNA-1:exon:3782;Parent=Msa1178170-mRNA-1
chr8_1 five_prime_UTR 10832949 10833006 10832949 ID=Msa1178170-mRNA-1:five_prime_utr;Parent=Msa1178170-mRNA-1
chr8_1 CDS 10832891 10832948 10832891 ID=Msa1178170-mRNA-1:cds;Parent=Msa1178170-mRNA-1
chr8_1 CDS 10832737 10832798 10832737 ID=Msa1178170-mRNA-1:cds;Parent=Msa1178170-mRNA-1
chr8_1 CDS 10831414 10831542 10831414 ID=Msa1178170-mRNA-1:cds;Parent=Msa1178170-mRNA-1
chr8_1 three_prime_UTR 10831001 10831413 10831001 ID=Msa1178170-mRNA-1:three_prime_utr;Parent=Msa1178170-mRNA-1
Gene Sequence

>Msa1178170

ATGTCGAAGAAGAACGACCTCGCTAAGAGAAAGAGACAACACGAATTCGAACTCCGAAGAGAAAAACTTGAGAAGGAGAAGAAAGAAAAGAAGCTCCAAGCGAAGAAAAACAAGATGAAAGTTGATGGTAGTGACAAGAAAAAGAAGGGTGGTGGAAGTGGATTTAAGGTGGGAAAGAAATATCTGAAGACCAGGTTGTCAGCCCTGTCGAAAGCTAAAGCTGCGCAGGCAATGGAGCTCGACAAATAA

Protein sequence

>Msa1178170

MSKKNDLAKRKRQHEFELRREKLEKEKKEKKLQAKKNKMKVDGSDKKKKGGGSGFKVGKKYLKTRLSALSKAKAAQAMELDK*