AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1236890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236890 MtrunA17_Chr8g0347511 99.541 218 1 0 1 218 1 218 5.41e-154 425
Msa1236890 MtrunA17_Chr8g0376831 52.344 128 59 2 1 127 1 127 1.02e-40 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236890 AT5G12230.1 63.229 223 75 3 1 218 1 221 3.73e-61 191
Msa1236890 AT5G19480.3 60.000 215 77 3 1 214 1 207 2.31e-56 178
Msa1236890 AT5G19480.2 60.000 215 77 3 1 214 1 207 2.31e-56 178
Msa1236890 AT5G19480.1 60.000 215 77 3 1 214 1 207 2.31e-56 178
Msa1236890 AT5G19480.4 60.000 215 77 3 1 214 1 207 2.31e-56 178

Find 84 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATCCGTCAGTAATATT+AGG 0.204662 8_2:+16135768 None:intergenic
TGGTTAATTTGTAAACTATA+TGG 0.216653 8_2:-16135808 Msa1236890:three_prime_UTR
TTTCTTCTTCTTTCACTGTT+TGG 0.231758 8_2:-16141736 Msa1236890:five_prime_UTR
TCCATCCGTCAGTAATATTA+GGG 0.250154 8_2:+16135769 None:intergenic
ATCCGTCGAAGTTAAATAAA+TGG 0.276751 8_2:+16135842 None:intergenic
AAGAAGAAGAAAGGGATTAA+AGG 0.326969 8_2:+16141747 None:intergenic
AGGATAACTGAAATAACTAT+TGG 0.351103 8_2:-16135901 Msa1236890:three_prime_UTR
GGATAACTGAAATAACTATT+GGG 0.353682 8_2:-16135900 Msa1236890:three_prime_UTR
TGGGAGCTGTTTCCCTTAGT+TGG 0.360962 8_2:+16139358 None:intergenic
TCGACGGATGGATCTGTATA+TGG 0.366636 8_2:-16135828 Msa1236890:three_prime_UTR
AGAAGAAGAAAGGGATTAAA+GGG 0.373158 8_2:+16141748 None:intergenic
AATCTTTGTGTTTGTTCCTT+CGG 0.399112 8_2:+16141825 None:intergenic
GTGTCAATTTGAAGGTGATT+TGG 0.403938 8_2:-16141491 Msa1236890:five_prime_UTR
AGCTCAAGAATTGATGAGTT+GGG 0.406971 8_2:-16138250 Msa1236890:CDS
GGTTAATTTGTAAACTATAT+GGG 0.410247 8_2:-16135807 Msa1236890:three_prime_UTR
AGCATAAGAAGCACAAAGAC+AGG 0.416670 8_2:-16139107 Msa1236890:CDS
AAAAGGAGATGGCATGCAAT+TGG 0.425102 8_2:-16139466 Msa1236890:CDS
TCGAAGTTAAATAAATGGTA+TGG 0.425907 8_2:+16135847 None:intergenic
TCAAGGAGGCTTTCCAACTA+AGG 0.441770 8_2:-16139371 Msa1236890:CDS
AAAGGAATACCAACAATTGC+AGG 0.443447 8_2:-16139162 Msa1236890:CDS
AATAACCGACAGCTTTGATC+AGG 0.445575 8_2:-16140135 Msa1236890:intron
CTTTGTTGAGGTTTCAGTGT+TGG 0.445650 8_2:+16141799 None:intergenic
AAACAGTGAAAGAAGAAGAA+AGG 0.465344 8_2:+16141738 None:intergenic
TACCATTTATTTAACTTCGA+CGG 0.467860 8_2:-16135844 Msa1236890:three_prime_UTR
TTTCTTTGAGTGATCAGCAC+TGG 0.470774 8_2:+16138978 None:intergenic
TCAAGAAATCTGAAAATGTC+AGG 0.479687 8_2:+16138133 None:intergenic
TTTGTGTTGTGTCAATTTGA+AGG 0.481281 8_2:-16141499 Msa1236890:five_prime_UTR
TTTCCCTAATAGGCGGAGAA+AGG 0.481542 8_2:-16139180 Msa1236890:intron
TTATTTGTTGCAGAGTAGCT+AGG 0.484718 8_2:-16136199 Msa1236890:intron
TATTTGTTGCAGAGTAGCTA+GGG 0.487765 8_2:-16136198 Msa1236890:intron
ACAGGGATAAGGACAAGGAC+AGG 0.491569 8_2:-16139089 Msa1236890:CDS
AACAGTGAAAGAAGAAGAAA+GGG 0.492849 8_2:+16141739 None:intergenic
AATTCACCTGATGGTGGAAA+AGG 0.493016 8_2:-16136146 Msa1236890:three_prime_UTR
CACTACCTGCACAGTGTAGT+AGG 0.493509 8_2:-16139504 Msa1236890:CDS
GAGCTCAAGAATTGATGAGT+TGG 0.493987 8_2:-16138251 Msa1236890:CDS
GGAGACACAGAAGTAAGAAA+AGG 0.503306 8_2:-16139483 Msa1236890:CDS
CAATTTGAAGGTGATTTGGT+GGG 0.504611 8_2:-16141487 Msa1236890:five_prime_UTR
CTCAAAGAAACATCATGAAA+AGG 0.506069 8_2:-16138965 Msa1236890:intron
ATTTATTTAACTTCGACGGA+TGG 0.519108 8_2:-16135840 Msa1236890:three_prime_UTR
TCCGCGATTGACACAGGAAG+CGG 0.522644 8_2:+16139531 None:intergenic
TAAAGGAAAGATCTTTGTTG+AGG 0.528082 8_2:+16141787 None:intergenic
TCGGATACAGCCTTTCGACT+TGG 0.534768 8_2:-16139400 Msa1236890:CDS
CATCATGATAGTCTTATAGT+CGG 0.535170 8_2:+16136172 None:intergenic
TCAATTTGAAGGTGATTTGG+TGG 0.537156 8_2:-16141488 Msa1236890:five_prime_UTR
CGAAGTTAAATAAATGGTAT+GGG 0.541995 8_2:+16135848 None:intergenic
GAAGCACAAAGACAGGGATA+AGG 0.543181 8_2:-16139100 Msa1236890:CDS
CAAATGACAACAACCAATTG+AGG 0.561634 8_2:+16138175 None:intergenic
ATCATGATAGTCTTATAGTC+GGG 0.563435 8_2:+16136173 None:intergenic
CAAGGAGGCTTTCCAACTAA+GGG 0.568109 8_2:-16139370 Msa1236890:CDS
GCTCAAGAATTGATGAGTTG+GGG 0.569389 8_2:-16138249 Msa1236890:CDS
TCAGGACCGAGGGAGTTGAC+AGG 0.569665 8_2:-16139615 Msa1236890:intron
TCTTACAGCAGGCAAATCGA+TGG 0.570777 8_2:+16139338 None:intergenic
CTGATGGTGGAAAAGGAAGC+AGG 0.572261 8_2:-16136139 Msa1236890:intron
TTTCGACTTGGATATACTCA+AGG 0.572941 8_2:-16139388 Msa1236890:CDS
GATAACTGAAATAACTATTG+GGG 0.573323 8_2:-16135899 Msa1236890:three_prime_UTR
CTTACAGCAGGCAAATCGAT+GGG 0.583764 8_2:+16139339 None:intergenic
TGTGTGTCCGCGATTGACAC+AGG 0.584301 8_2:+16139525 None:intergenic
CGACTATAAGACTATCATGA+TGG 0.587429 8_2:-16136171 Msa1236890:three_prime_UTR
ACAGCACCTGTCAACTCCCT+CGG 0.592323 8_2:+16139609 None:intergenic
TGTCTCCTACTACACTGTGC+AGG 0.593991 8_2:+16139499 None:intergenic
TTGTTGTCATTTGTATGTGA+AGG 0.602533 8_2:-16138165 Msa1236890:three_prime_UTR
AATTTGTAAACTATATGGGA+CGG 0.602653 8_2:-16135803 Msa1236890:three_prime_UTR
GCATAAGAAGCACAAAGACA+GGG 0.602938 8_2:-16139106 Msa1236890:CDS
ACAGAAGTAAGAAAAGGAGA+TGG 0.606393 8_2:-16139477 Msa1236890:CDS
CCATCCGTCAGTAATATTAG+GGG 0.607985 8_2:+16135770 None:intergenic
GAGGGAGTTGACAGGTGCTG+TGG 0.611611 8_2:-16139607 Msa1236890:CDS
AATTGAATCATGGATCCTGA+AGG 0.619824 8_2:-16140087 Msa1236890:exon
CAAAGACAGGGATAAGGACA+AGG 0.620436 8_2:-16139094 Msa1236890:CDS
GCCGCTTCCTGTGTCAATCG+CGG 0.625354 8_2:-16139532 Msa1236890:CDS
CAGGGATAAGGACAAGGACA+GGG 0.626401 8_2:-16139088 Msa1236890:CDS
ACAGCTTTGATCAGGTTCTG+TGG 0.628239 8_2:-16140127 Msa1236890:intron
CAGAAGCAAAGACAAAGACA+AGG 0.629036 8_2:-16139034 Msa1236890:CDS
CGACTTGGATATACTCAAGG+AGG 0.629284 8_2:-16139385 Msa1236890:CDS
CATCCGTCAGTAATATTAGG+GGG 0.629634 8_2:+16135771 None:intergenic
ATAACTGAAATAACTATTGG+GGG 0.648226 8_2:-16135898 Msa1236890:three_prime_UTR
TCTCAAGAGAGACAAGTGCT+CGG 0.651092 8_2:-16139419 Msa1236890:CDS
TTGAGTATATCCAAGTCGAA+AGG 0.652260 8_2:+16139390 None:intergenic
TTTCAGAAGAGGAAGCATGA+CGG 0.652327 8_2:-16138466 Msa1236890:intron
ATTTGTTGCAGAGTAGCTAG+GGG 0.663269 8_2:-16136197 Msa1236890:intron
ATGGTGAATTCACCTGATGG+TGG 0.663661 8_2:-16136152 Msa1236890:three_prime_UTR
CTCAAGAATTGATGAGTTGG+GGG 0.664098 8_2:-16138248 Msa1236890:CDS
GAAGCACAAACATCGTCACA+AGG 0.684990 8_2:-16139058 Msa1236890:CDS
ATGATGGTGAATTCACCTGA+TGG 0.706691 8_2:-16136155 Msa1236890:three_prime_UTR
ACAATCACGAGTACTACCGA+AGG 0.714721 8_2:-16141841 Msa1236890:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCAATTTATCAAAATA+TGG - chr8_2:16137065-16137084 Msa1236890:intron 10.0%
!!! AATGATTTATATAATTTTGT+TGG - chr8_2:16137438-16137457 Msa1236890:intron 10.0%
!! GAACATTTAAAAAATTATTA+GGG + chr8_2:16137519-16137538 None:intergenic 10.0%
!! AGAACATTTAAAAAATTATT+AGG + chr8_2:16137520-16137539 None:intergenic 10.0%
!!! AATAAAGATTTTATAGAATT+AGG + chr8_2:16137675-16137694 None:intergenic 10.0%
!! AAATTATTATAATAATTTGG+GGG + chr8_2:16141267-16141286 None:intergenic 10.0%
!! GAAATTATTATAATAATTTG+GGG + chr8_2:16141268-16141287 None:intergenic 10.0%
!! GTGAAATTATTATAATAATT+TGG + chr8_2:16141270-16141289 None:intergenic 10.0%
!! TTATGTATTCATTGAAAATT+TGG + chr8_2:16136030-16136049 None:intergenic 15.0%
!!! TTTAATTTTCAAATGATTAC+CGG - chr8_2:16136952-16136971 Msa1236890:intron 15.0%
!! TCAATTCCAAAAAAATTAAT+GGG + chr8_2:16137869-16137888 None:intergenic 15.0%
!! TTCAATTCCAAAAAAATTAA+TGG + chr8_2:16137870-16137889 None:intergenic 15.0%
!!! TTAATTTTTTTGGAATTGAA+TGG - chr8_2:16137870-16137889 Msa1236890:intron 15.0%
!! AGAGAAAAAATTAAAAATTG+TGG + chr8_2:16139594-16139613 None:intergenic 15.0%
!! TCAATTTCAAATTTAATTGT+CGG - chr8_2:16139969-16139988 Msa1236890:intron 15.0%
!! AAAAGAAAAAAAATCAATCA+GGG + chr8_2:16140126-16140145 None:intergenic 15.0%
!! TAAAAGAAAAAAAATCAATC+AGG + chr8_2:16140127-16140146 None:intergenic 15.0%
!! AATTATTATAATAATTTGGG+GGG + chr8_2:16141266-16141285 None:intergenic 15.0%
!!! AAAACTAAGAATTTTATTCA+TGG - chr8_2:16141390-16141409 Msa1236890:intron 15.0%
!! CAACAAATAAAAAAAACAAT+TGG + chr8_2:16141474-16141493 None:intergenic 15.0%
!! GTTCTCACAAAAATATATAA+AGG + chr8_2:16135916-16135935 None:intergenic 20.0%
!! AGTCAAGAATAACAATAAAA+AGG + chr8_2:16136061-16136080 None:intergenic 20.0%
!!! TTTTGAAGTTGGAATTTTTT+AGG - chr8_2:16136280-16136299 Msa1236890:intron 20.0%
!!! TTTGAAGTTGGAATTTTTTA+GGG - chr8_2:16136281-16136300 Msa1236890:intron 20.0%
!!! TATTAATGTGAAGAAGATTT+TGG - chr8_2:16136329-16136348 Msa1236890:intron 20.0%
!!! ATTAATGTGAAGAAGATTTT+GGG - chr8_2:16136330-16136349 Msa1236890:intron 20.0%
!!! TGTTAATTTTTTTTGAACGT+TGG - chr8_2:16136414-16136433 Msa1236890:intron 20.0%
!! TGAATATTTAACAATCTTCA+AGG - chr8_2:16136440-16136459 Msa1236890:intron 20.0%
!! TCAGTTTCATATAATCAATA+GGG + chr8_2:16136617-16136636 None:intergenic 20.0%
!! TTCAGTTTCATATAATCAAT+AGG + chr8_2:16136618-16136637 None:intergenic 20.0%
!! TTACAATTTAGATCATCTAA+AGG - chr8_2:16136648-16136667 Msa1236890:intron 20.0%
!!! AGTTAGTTTGATTAAGTTTT+GGG - chr8_2:16137316-16137335 Msa1236890:intron 20.0%
!!! GACAAATGATGATTTTTATA+TGG - chr8_2:16137470-16137489 Msa1236890:intron 20.0%
!!! TTATCACCCATTAATTTTTT+TGG - chr8_2:16137860-16137879 Msa1236890:intron 20.0%
!!! TATTGTGCAAACTTTAAAAA+GGG + chr8_2:16137962-16137981 None:intergenic 20.0%
!!! CATAATATTTTGTGCTAAAT+AGG + chr8_2:16139020-16139039 None:intergenic 20.0%
!! TTATGAAATAACAGTTATAG+CGG - chr8_2:16139035-16139054 Msa1236890:CDS 20.0%
!!! ATTCTTTTTTGGAGTTTTAA+CGG - chr8_2:16139636-16139655 Msa1236890:intron 20.0%
!! TTGCAAATAAAAGCAATTAA+GGG + chr8_2:16139666-16139685 None:intergenic 20.0%
!! TTTGCAAATAAAAGCAATTA+AGG + chr8_2:16139667-16139686 None:intergenic 20.0%
!! CAATTTCAAATTTAATTGTC+GGG - chr8_2:16139970-16139989 Msa1236890:intron 20.0%
!! AATTTCAAATTTAATTGTCG+GGG - chr8_2:16139971-16139990 Msa1236890:intron 20.0%
!! AATGTTGCCAATAAATAAAA+GGG - chr8_2:16140282-16140301 Msa1236890:intron 20.0%
!! TTATGAGCAATATAAAATGT+TGG - chr8_2:16141014-16141033 Msa1236890:intron 20.0%
!! AATTTATCACAGCATAATAA+GGG + chr8_2:16141222-16141241 None:intergenic 20.0%
!! TAATTTATCACAGCATAATA+AGG + chr8_2:16141223-16141242 None:intergenic 20.0%
!!! TGGTTAATTTGTAAACTATA+TGG - chr8_2:16141875-16141894 Msa1236890:five_prime_UTR 20.0%
!!! GGTTAATTTGTAAACTATAT+GGG - chr8_2:16141876-16141895 Msa1236890:five_prime_UTR 20.0%
! TTTACACACTATATCTATCA+TGG - chr8_2:16135996-16136015 Msa1236890:three_prime_UTR 25.0%
! TTACACACTATATCTATCAT+GGG - chr8_2:16135997-16136016 Msa1236890:three_prime_UTR 25.0%
! ATAAGCCAAAATCATCAATA+GGG + chr8_2:16136085-16136104 None:intergenic 25.0%
! AATAAGCCAAAATCATCAAT+AGG + chr8_2:16136086-16136105 None:intergenic 25.0%
!!! TTTTGGCTTATTTTGATGAA+AGG - chr8_2:16136094-16136113 Msa1236890:intron 25.0%
!! CTTTCGAAGAAATTTTTGTT+GGG - chr8_2:16136133-16136152 Msa1236890:intron 25.0%
!! TTTCGAAGAAATTTTTGTTG+GGG - chr8_2:16136134-16136153 Msa1236890:intron 25.0%
!!! GTTTTGATTGTTTTTGAAGT+TGG - chr8_2:16136269-16136288 Msa1236890:intron 25.0%
!! ATTAACAGCTTTTCAAAAAG+TGG + chr8_2:16136401-16136420 None:intergenic 25.0%
! ATATTTAACAATCTTCAAGG+TGG - chr8_2:16136443-16136462 Msa1236890:intron 25.0%
!!! TTCAGTTTTGAAAAGAAAAG+GGG + chr8_2:16136575-16136594 None:intergenic 25.0%
!!! GTTCAGTTTTGAAAAGAAAA+GGG + chr8_2:16136576-16136595 None:intergenic 25.0%
! TTTCACATGGATAAATACTA+TGG + chr8_2:16136676-16136695 None:intergenic 25.0%
! ATGCTTCTCTTGATATAAAT+TGG - chr8_2:16136700-16136719 Msa1236890:intron 25.0%
! AACTTATCAACTGTATTACT+TGG - chr8_2:16136824-16136843 Msa1236890:intron 25.0%
! ACTTATCAACTGTATTACTT+GGG - chr8_2:16136825-16136844 Msa1236890:intron 25.0%
! TTGAATGTAATCATATGTGT+CGG + chr8_2:16136928-16136947 None:intergenic 25.0%
!!! TTGGTCTAGAATGATTTTTA+TGG - chr8_2:16137026-16137045 Msa1236890:intron 25.0%
! AAATATGGAAAAAGAGAATG+AGG - chr8_2:16137080-16137099 Msa1236890:intron 25.0%
!!! CATGGATTAATATTTTCTGT+TGG - chr8_2:16137152-16137171 Msa1236890:intron 25.0%
! CAAAACTTAATCAAACTAAC+TGG + chr8_2:16137317-16137336 None:intergenic 25.0%
!!! CAGTTAGTTTGATTAAGTTT+TGG - chr8_2:16137315-16137334 Msa1236890:intron 25.0%
!!! GTTAGTTTGATTAAGTTTTG+GGG - chr8_2:16137317-16137336 Msa1236890:intron 25.0%
!! CAAGTTAAATGTCTTTTTGT+TGG - chr8_2:16137349-16137368 Msa1236890:intron 25.0%
! TTCTTTACTGCAATTTAAGA+GGG - chr8_2:16137403-16137422 Msa1236890:intron 25.0%
! AACCATGAAAAATTGAATCA+TGG - chr8_2:16137586-16137605 Msa1236890:intron 25.0%
!! ATCCATGATTCAATTTTTCA+TGG + chr8_2:16137591-16137610 None:intergenic 25.0%
! TGCCATAAACATATGAAATA+GGG + chr8_2:16137733-16137752 None:intergenic 25.0%
! GTTATCTAATTGACAATACT+TGG - chr8_2:16137765-16137784 Msa1236890:intron 25.0%
!! ATTGTGCAAACTTTAAAAAG+GGG + chr8_2:16137961-16137980 None:intergenic 25.0%
!! GTATTGTGCAAACTTTAAAA+AGG + chr8_2:16137963-16137982 None:intergenic 25.0%
! ATACAGAATGTCAAAAAACA+CGG + chr8_2:16138038-16138057 None:intergenic 25.0%
! TAATTCTTGCTGAAATCATT+CGG - chr8_2:16138401-16138420 Msa1236890:intron 25.0%
! ATATCAGTGATGTTAAATAG+CGG - chr8_2:16138939-16138958 Msa1236890:intron 25.0%
! AGATATTGAGCAAAAGTAAA+AGG + chr8_2:16139198-16139217 None:intergenic 25.0%
!!! CTATGTACTTCATTCTTTTT+TGG - chr8_2:16139625-16139644 Msa1236890:intron 25.0%
!!! TTCTTTTTTGGAGTTTTAAC+GGG - chr8_2:16139637-16139656 Msa1236890:intron 25.0%
! TCATATAACTAGGAATCAAA+CGG + chr8_2:16139706-16139725 None:intergenic 25.0%
!! ATGTAGTTAACAATTTTTCC+TGG - chr8_2:16139744-16139763 Msa1236890:intron 25.0%
! GAATGTTGCCAATAAATAAA+AGG - chr8_2:16140281-16140300 Msa1236890:intron 25.0%
! TGATAAATATGTGAATGCAA+TGG - chr8_2:16140475-16140494 Msa1236890:intron 25.0%
! AGAAAATATTGTGAGAGAAA+GGG - chr8_2:16140588-16140607 Msa1236890:intron 25.0%
!! TTATTTTCTTCAGTAACTCA+AGG + chr8_2:16140682-16140701 None:intergenic 25.0%
! AGAAAATAATAGAGCTTTAC+CGG - chr8_2:16140693-16140712 Msa1236890:intron 25.0%
! TATATATAAGAGGGATTTAG+AGG - chr8_2:16140955-16140974 Msa1236890:intron 25.0%
! ATATATAAGAGGGATTTAGA+GGG - chr8_2:16140956-16140975 Msa1236890:intron 25.0%
! TAATTCTCTTAAATGACAAG+AGG + chr8_2:16140983-16141002 None:intergenic 25.0%
!! CTTGTCATTTAAGAGAATTA+AGG - chr8_2:16140983-16141002 Msa1236890:intron 25.0%
!! TATTACTGTGTTTTGTAACT+TGG - chr8_2:16141132-16141151 Msa1236890:intron 25.0%
! AAAATAGATTGCAAAACTTC+CGG + chr8_2:16141178-16141197 None:intergenic 25.0%
!! AGTTTTGCAATCTATTTTGT+AGG - chr8_2:16141180-16141199 Msa1236890:intron 25.0%
! ATTATGCTGTGATAAATTAC+CGG - chr8_2:16141224-16141243 Msa1236890:intron 25.0%
! ATTATAATAATTTCACCCTG+TGG - chr8_2:16141274-16141293 Msa1236890:intron 25.0%
! TTATAATAATTTCACCCTGT+GGG - chr8_2:16141275-16141294 Msa1236890:intron 25.0%
!! ATTTTTCATGAATCTCAAAC+TGG - chr8_2:16141328-16141347 Msa1236890:intron 25.0%
! AGGATAACTGAAATAACTAT+TGG - chr8_2:16141782-16141801 Msa1236890:five_prime_UTR 25.0%
! GGATAACTGAAATAACTATT+GGG - chr8_2:16141783-16141802 Msa1236890:five_prime_UTR 25.0%
! GATAACTGAAATAACTATTG+GGG - chr8_2:16141784-16141803 Msa1236890:five_prime_UTR 25.0%
! ATAACTGAAATAACTATTGG+GGG - chr8_2:16141785-16141804 Msa1236890:five_prime_UTR 25.0%
! CGAAGTTAAATAAATGGTAT+GGG + chr8_2:16141838-16141857 None:intergenic 25.0%
! TCGAAGTTAAATAAATGGTA+TGG + chr8_2:16141839-16141858 None:intergenic 25.0%
!! TACCATTTATTTAACTTCGA+CGG - chr8_2:16141839-16141858 Msa1236890:five_prime_UTR 25.0%
! AATTTGTAAACTATATGGGA+CGG - chr8_2:16141880-16141899 Msa1236890:five_prime_UTR 25.0%
AATCTTTGTGTTTGTTCCTT+CGG + chr8_2:16135861-16135880 None:intergenic 30.0%
TAAAGGAAAGATCTTTGTTG+AGG + chr8_2:16135899-16135918 None:intergenic 30.0%
AGAAGAAGAAAGGGATTAAA+GGG + chr8_2:16135938-16135957 None:intergenic 30.0%
AAGAAGAAGAAAGGGATTAA+AGG + chr8_2:16135939-16135958 None:intergenic 30.0%
AACAGTGAAAGAAGAAGAAA+GGG + chr8_2:16135947-16135966 None:intergenic 30.0%
AAACAGTGAAAGAAGAAGAA+AGG + chr8_2:16135948-16135967 None:intergenic 30.0%
TTTCTTCTTCTTTCACTGTT+TGG - chr8_2:16135947-16135966 Msa1236890:three_prime_UTR 30.0%
! GCTTTCGAAGAAATTTTTGT+TGG - chr8_2:16136132-16136151 Msa1236890:intron 30.0%
TTTGTGTTGTGTCAATTTGA+AGG - chr8_2:16136184-16136203 Msa1236890:three_prime_UTR 30.0%
!!! AGAAGATTTTGGGTTTTTTG+TGG - chr8_2:16136340-16136359 Msa1236890:intron 30.0%
ACAGGATAAGAAACAATTGA+TGG - chr8_2:16136474-16136493 Msa1236890:intron 30.0%
!!! GGTTCAGTTTTGAAAAGAAA+AGG + chr8_2:16136577-16136596 None:intergenic 30.0%
!! TTTTTGTTATGCTAGTGTGT+TGG - chr8_2:16136782-16136801 Msa1236890:intron 30.0%
TGATGATTTCATGTGTGATT+TGG - chr8_2:16136848-16136867 Msa1236890:intron 30.0%
GATGATTTCATGTGTGATTT+GGG - chr8_2:16136849-16136868 Msa1236890:intron 30.0%
AATGAGGTGAATGAATTCTA+TGG - chr8_2:16137096-16137115 Msa1236890:intron 30.0%
TAGCTGTACAATAATGATTG+TGG - chr8_2:16137273-16137292 Msa1236890:intron 30.0%
AGCTGTACAATAATGATTGT+GGG - chr8_2:16137274-16137293 Msa1236890:intron 30.0%
CTCTTAAATTGCAGTAAAGA+AGG + chr8_2:16137404-16137423 None:intergenic 30.0%
CTTCTTTACTGCAATTTAAG+AGG - chr8_2:16137402-16137421 Msa1236890:intron 30.0%
GTCCCTATTTCATATGTTTA+TGG - chr8_2:16137728-16137747 Msa1236890:intron 30.0%
GTGCCATAAACATATGAAAT+AGG + chr8_2:16137734-16137753 None:intergenic 30.0%
!!! TAGTTTTTTATTTGCCCTTC+TGG - chr8_2:16137817-16137836 Msa1236890:intron 30.0%
!! TTCTGTATTTTTGAATCCTC+AGG - chr8_2:16138050-16138069 Msa1236890:intron 30.0%
TTGCAGAAAAATTCATAGTG+CGG + chr8_2:16138128-16138147 None:intergenic 30.0%
! ACTATGAATTTTTCTGCAAG+AGG - chr8_2:16138129-16138148 Msa1236890:intron 30.0%
!! TTTGATTTTCCTGCAATTGT+TGG + chr8_2:16138533-16138552 None:intergenic 30.0%
GACAAAAAGAAAGACAAAAG+CGG - chr8_2:16138671-16138690 Msa1236890:intron 30.0%
ACAAAAAGAAAGACAAAAGC+GGG - chr8_2:16138672-16138691 Msa1236890:intron 30.0%
CTCAAAGAAACATCATGAAA+AGG - chr8_2:16138718-16138737 Msa1236890:intron 30.0%
AGTACTTGTAAACTCTGTTT+AGG - chr8_2:16138888-16138907 Msa1236890:intron 30.0%
ATTAAAATGATCTCCTTCAC+TGG + chr8_2:16138916-16138935 None:intergenic 30.0%
CATTTGCTCTACATACTATT+TGG - chr8_2:16139140-16139159 Msa1236890:CDS 30.0%
TTCTGGTGTATATTTCTTAG+TGG - chr8_2:16139348-16139367 Msa1236890:CDS 30.0%
! TTGTTGTCATTTGTATGTGA+AGG - chr8_2:16139518-16139537 Msa1236890:CDS 30.0%
TCAAGAAATCTGAAAATGTC+AGG + chr8_2:16139553-16139572 None:intergenic 30.0%
! TGACATTTTCAGATTTCTTG+AGG - chr8_2:16139552-16139571 Msa1236890:CDS 30.0%
AAGAATGAAGTACATAGTCA+TGG + chr8_2:16139622-16139641 None:intergenic 30.0%
!!! TCTTTTTTGGAGTTTTAACG+GGG - chr8_2:16139638-16139657 Msa1236890:intron 30.0%
CATATAACTAGGAATCAAAC+GGG + chr8_2:16139705-16139724 None:intergenic 30.0%
GTCAATTATGGAAAATAGTG+TGG + chr8_2:16139932-16139951 None:intergenic 30.0%
!! GCTCAATCCCTTTTATTTAT+TGG + chr8_2:16140292-16140311 None:intergenic 30.0%
CAACCTGTTATGTAATCAAA+GGG - chr8_2:16140362-16140381 Msa1236890:intron 30.0%
ATTCCCTTTGATTACATAAC+AGG + chr8_2:16140368-16140387 None:intergenic 30.0%
! TTCTCTCACAATATTTTCTG+TGG + chr8_2:16140587-16140606 None:intergenic 30.0%
CAGAAAATATTGTGAGAGAA+AGG - chr8_2:16140587-16140606 Msa1236890:intron 30.0%
TATATAAGAGGGATTTAGAG+GGG - chr8_2:16140957-16140976 Msa1236890:intron 30.0%
GGTTATTTACATAGCAAGTT+AGG - chr8_2:16141035-16141054 Msa1236890:intron 30.0%
! CAATCTATTTTGTAGGCAAA+AGG - chr8_2:16141187-16141206 Msa1236890:intron 30.0%
TTAAAAGCAGTGTGATAAAG+TGG - chr8_2:16141359-16141378 Msa1236890:intron 30.0%
!! ATCATGATAGTCTTATAGTC+GGG + chr8_2:16141513-16141532 None:intergenic 30.0%
!! CATCATGATAGTCTTATAGT+CGG + chr8_2:16141514-16141533 None:intergenic 30.0%
AGTTCACTAGCAATTCTATA+AGG + chr8_2:16141613-16141632 None:intergenic 30.0%
ATAGAATTGCTAGTGAACTT+TGG - chr8_2:16141614-16141633 Msa1236890:intron 30.0%
!! GATCTAGAAGCTTTTTGTTT+AGG - chr8_2:16141762-16141781 Msa1236890:five_prime_UTR 30.0%
ATCCGTCGAAGTTAAATAAA+TGG + chr8_2:16141844-16141863 None:intergenic 30.0%
! ATTTATTTAACTTCGACGGA+TGG - chr8_2:16141843-16141862 Msa1236890:five_prime_UTR 30.0%
!! GACTACCCTATTGATGATTT+TGG - chr8_2:16136077-16136096 Msa1236890:intron 35.0%
GTGTCAATTTGAAGGTGATT+TGG - chr8_2:16136192-16136211 Msa1236890:intron 35.0%
! TCAATTTGAAGGTGATTTGG+TGG - chr8_2:16136195-16136214 Msa1236890:intron 35.0%
!! CAATTTGAAGGTGATTTGGT+GGG - chr8_2:16136196-16136215 Msa1236890:intron 35.0%
! TTGAGGATTTTTCACTCTTC+AGG - chr8_2:16136230-16136249 Msa1236890:intron 35.0%
TTCAAGGTGGAAATTGAAAC+AGG - chr8_2:16136456-16136475 Msa1236890:intron 35.0%
!!! AGTTTTGAAAAGAAAAGGGG+TGG + chr8_2:16136572-16136591 None:intergenic 35.0%
CTCTTGATATAAATTGGTGC+TGG - chr8_2:16136706-16136725 Msa1236890:intron 35.0%
TGTTTGTTTCAGTGCTTCAT+TGG - chr8_2:16137007-16137026 Msa1236890:intron 35.0%
! TGTTTGCAGATCATTAGCTT+TGG - chr8_2:16137128-16137147 Msa1236890:intron 35.0%
!! GTTTGCAGATCATTAGCTTT+GGG - chr8_2:16137129-16137148 Msa1236890:intron 35.0%
!!! ATATTTTCTGTTGGCCTTAC+TGG - chr8_2:16137161-16137180 Msa1236890:intron 35.0%
!!! TATTTTCTGTTGGCCTTACT+GGG - chr8_2:16137162-16137181 Msa1236890:intron 35.0%
AAAAACAAGTGTTCCCAGTA+AGG + chr8_2:16137178-16137197 None:intergenic 35.0%
!!! GAACACTTGTTTTTTCCAGT+TGG - chr8_2:16137184-16137203 Msa1236890:intron 35.0%
!!! TTTTTCCAGTTGGTCTTAGA+TGG - chr8_2:16137194-16137213 Msa1236890:intron 35.0%
! TGTACAGCTAAAAGCTTTGT+AGG + chr8_2:16137263-16137282 None:intergenic 35.0%
!!! TGATTAAGTTTTGGGGTTTG+TGG - chr8_2:16137324-16137343 Msa1236890:intron 35.0%
! GTCTTTTTGTTGGATTGTCA+TGG - chr8_2:16137359-16137378 Msa1236890:intron 35.0%
!!! GGATTGTCATGGTTTTGAAA+TGG - chr8_2:16137370-16137389 Msa1236890:intron 35.0%
TGGTATCATCTGCTTCATTA+TGG - chr8_2:16137490-16137509 Msa1236890:intron 35.0%
AATTGAATCATGGATCCTGA+AGG - chr8_2:16137596-16137615 Msa1236890:intron 35.0%
GATCCTGAAGGAAAAAAGTT+TGG - chr8_2:16137608-16137627 Msa1236890:intron 35.0%
AAGTTTCAAATCTGCCAGAA+GGG + chr8_2:16137834-16137853 None:intergenic 35.0%
AAAGTTTCAAATCTGCCAGA+AGG + chr8_2:16137835-16137854 None:intergenic 35.0%
ACAGAAGTAAGAAAAGGAGA+TGG - chr8_2:16138206-16138225 Msa1236890:three_prime_UTR 35.0%
TTGAGTATATCCAAGTCGAA+AGG + chr8_2:16138296-16138315 None:intergenic 35.0%
!! TTTCGACTTGGATATACTCA+AGG - chr8_2:16138295-16138314 Msa1236890:intron 35.0%
ACTACACAATTTCTTACAGC+AGG + chr8_2:16138359-16138378 None:intergenic 35.0%
!! GTTTGATGATGTGTTCTTTG+TGG - chr8_2:16138453-16138472 Msa1236890:CDS 35.0%
! GTTCCTTGATTTTCCCTAAT+AGG - chr8_2:16138493-16138512 Msa1236890:intron 35.0%
AAAGGAATACCAACAATTGC+AGG - chr8_2:16138521-16138540 Msa1236890:intron 35.0%
TTGCAATGTTATTGCATGAC+AGG + chr8_2:16138807-16138826 None:intergenic 35.0%
! TTTGTGCTAAATAGGTATCG+CGG + chr8_2:16139012-16139031 None:intergenic 35.0%
ATATCGAACAGTGTTGTCAA+TGG + chr8_2:16139117-16139136 None:intergenic 35.0%
TGCTCAATATCTTTCAGAAG+AGG - chr8_2:16139206-16139225 Msa1236890:intron 35.0%
GCACAAACACAAAAAGAGTA+AGG - chr8_2:16139261-16139280 Msa1236890:intron 35.0%
ATATACACCAGAAATGTGCT+GGG + chr8_2:16139341-16139360 None:intergenic 35.0%
AATATACACCAGAAATGTGC+TGG + chr8_2:16139342-16139361 None:intergenic 35.0%
AGCTCAAGAATTGATGAGTT+GGG - chr8_2:16139433-16139452 Msa1236890:CDS 35.0%
! TTCACTCTCTTTTCCTCAAT+TGG - chr8_2:16139495-16139514 Msa1236890:CDS 35.0%
CAAATGACAACAACCAATTG+AGG + chr8_2:16139511-16139530 None:intergenic 35.0%
GCTGCTAATAAATAGCGTAT+TGG + chr8_2:16139867-16139886 None:intergenic 35.0%
GAGATCAGTGTTGTCAATTA+TGG + chr8_2:16139944-16139963 None:intergenic 35.0%
ATTGTAAGACAAATCTACCC+TGG - chr8_2:16140041-16140060 Msa1236890:intron 35.0%
AAAATCAATCAGGGTCTGAA+TGG + chr8_2:16140117-16140136 None:intergenic 35.0%
! ACTTGCTAACTAACTACCTA+GGG + chr8_2:16140232-16140251 None:intergenic 35.0%
AGTTAGTTAGCAAGTGAGTT+AGG - chr8_2:16140237-16140256 Msa1236890:intron 35.0%
GTTAGTTAGCAAGTGAGTTA+GGG - chr8_2:16140238-16140257 Msa1236890:intron 35.0%
GGAGACAATTAGGAGAAATA+AGG - chr8_2:16140259-16140278 Msa1236890:intron 35.0%
AATAAAAGGGATTGAGCATG+AGG - chr8_2:16140295-16140314 Msa1236890:intron 35.0%
ATAAAAGGGATTGAGCATGA+GGG - chr8_2:16140296-16140315 Msa1236890:intron 35.0%
GCAACCTGTTATGTAATCAA+AGG - chr8_2:16140361-16140380 Msa1236890:intron 35.0%
TATCAACCGACATTGTATCA+CGG + chr8_2:16140411-16140430 None:intergenic 35.0%
! CAATGTCGGTTGATATCAAT+CGG - chr8_2:16140416-16140435 Msa1236890:intron 35.0%
ATATGTGAATGCAATGGTTG+TGG - chr8_2:16140481-16140500 Msa1236890:intron 35.0%
AAATATTGTGAGAGAAAGGG+AGG - chr8_2:16140591-16140610 Msa1236890:intron 35.0%
GGTTCAATCTGTTGACATAA+TGG - chr8_2:16140651-16140670 Msa1236890:intron 35.0%
TTATCACTTACAGAAGAGTC+CGG + chr8_2:16140715-16140734 None:intergenic 35.0%
GACAGTCTGAACATTAACAA+GGG + chr8_2:16140793-16140812 None:intergenic 35.0%
AGACAGTCTGAACATTAACA+AGG + chr8_2:16140794-16140813 None:intergenic 35.0%
! AAGAAGTTTTTGTCGTACTG+AGG - chr8_2:16140894-16140913 Msa1236890:intron 35.0%
TAAAAGAATGCATCTTGCCT+CGG - chr8_2:16140931-16140950 Msa1236890:intron 35.0%
TGATAGAATGAGAGAAGATG+AGG + chr8_2:16141071-16141090 None:intergenic 35.0%
AGATAATGCAGACTGAAACA+TGG + chr8_2:16141102-16141121 None:intergenic 35.0%
TTGTAACTTGGATTTGTCAG+AGG - chr8_2:16141144-16141163 Msa1236890:intron 35.0%
! TTATTTGTTGCAGAGTAGCT+AGG - chr8_2:16141484-16141503 Msa1236890:five_prime_UTR 35.0%
! TATTTGTTGCAGAGTAGCTA+GGG - chr8_2:16141485-16141504 Msa1236890:five_prime_UTR 35.0%
CGACTATAAGACTATCATGA+TGG - chr8_2:16141512-16141531 Msa1236890:five_prime_UTR 35.0%
CTTTGTTGAGGTTTCAGTGT+TGG + chr8_2:16135887-16135906 None:intergenic 40.0%
! GTTTGGATCTGCAATTTTGC+AGG - chr8_2:16135964-16135983 Msa1236890:three_prime_UTR 40.0%
! CGAAGAAATTTTTGTTGGGG+TGG - chr8_2:16136137-16136156 Msa1236890:intron 40.0%
! GGTTGAAGTTTTGCAATTGC+TGG - chr8_2:16136158-16136177 Msa1236890:three_prime_UTR 40.0%
! TGAAGTTTTGCAATTGCTGG+AGG - chr8_2:16136161-16136180 Msa1236890:three_prime_UTR 40.0%
! AGGATTTTTCACTCTTCAGG+TGG - chr8_2:16136233-16136252 Msa1236890:intron 40.0%
! GGATTTTTCACTCTTCAGGT+GGG - chr8_2:16136234-16136253 Msa1236890:intron 40.0%
! GATTTTTCACTCTTCAGGTG+GGG - chr8_2:16136235-16136254 Msa1236890:intron 40.0%
AGGGATGACATGAACTTGAT+TGG + chr8_2:16136598-16136617 None:intergenic 40.0%
!! GAGAAGCATTCAGTTTCACA+TGG + chr8_2:16136689-16136708 None:intergenic 40.0%
! AAACACCATCTAAGACCAAC+TGG + chr8_2:16137202-16137221 None:intergenic 40.0%
! TGGTGTTTTGCTTGAATGCT+AGG - chr8_2:16137214-16137233 Msa1236890:intron 40.0%
! GGTGTTTTGCTTGAATGCTA+GGG - chr8_2:16137215-16137234 Msa1236890:intron 40.0%
! TGATCAAAGCTGTCGGTTAT+TGG + chr8_2:16137549-16137568 None:intergenic 40.0%
! AATAACCGACAGCTTTGATC+AGG - chr8_2:16137548-16137567 Msa1236890:intron 40.0%
!!! CCTCCAAACTTTTTTCCTTC+AGG + chr8_2:16137614-16137633 None:intergenic 40.0%
CCTGAAGGAAAAAAGTTTGG+AGG - chr8_2:16137611-16137630 Msa1236890:intron 40.0%
GAAGGAAAAAAGTTTGGAGG+AGG - chr8_2:16137614-16137633 Msa1236890:intron 40.0%
GGAGACACAGAAGTAAGAAA+AGG - chr8_2:16138200-16138219 Msa1236890:three_prime_UTR 40.0%
AAAAGGAGATGGCATGCAAT+TGG - chr8_2:16138217-16138236 Msa1236890:exon 40.0%
! CCTTGATTTTCCCTAATAGG+CGG - chr8_2:16138496-16138515 Msa1236890:intron 40.0%
ATTCCTTTCTCCGCCTATTA+GGG + chr8_2:16138509-16138528 None:intergenic 40.0%
TATTCCTTTCTCCGCCTATT+AGG + chr8_2:16138510-16138529 None:intergenic 40.0%
! AGCATAAGAAGCACAAAGAC+AGG - chr8_2:16138576-16138595 Msa1236890:intron 40.0%
! GCATAAGAAGCACAAAGACA+GGG - chr8_2:16138577-16138596 Msa1236890:intron 40.0%
CAGAAGCAAAGACAAAGACA+AGG - chr8_2:16138649-16138668 Msa1236890:intron 40.0%
TTTCTTTGAGTGATCAGCAC+TGG + chr8_2:16138708-16138727 None:intergenic 40.0%
GCTATAGCGTTGTTGCATAA+TGG - chr8_2:16138963-16138982 Msa1236890:intron 40.0%
TCTATAGCACTATTGCGTTG+TGG - chr8_2:16139059-16139078 Msa1236890:CDS 40.0%
! TTTCAGAAGAGGAAGCATGA+CGG - chr8_2:16139217-16139236 Msa1236890:intron 40.0%
GAGCTCAAGAATTGATGAGT+TGG - chr8_2:16139432-16139451 Msa1236890:CDS 40.0%
GCTCAAGAATTGATGAGTTG+GGG - chr8_2:16139434-16139453 Msa1236890:CDS 40.0%
! CTCAAGAATTGATGAGTTGG+GGG - chr8_2:16139435-16139454 Msa1236890:CDS 40.0%
GCTGTCTGACTCATATAACT+AGG + chr8_2:16139716-16139735 None:intergenic 40.0%
!! AGAGATTTGTTGCTCAATCC+AGG + chr8_2:16139765-16139784 None:intergenic 40.0%
TTCTCGAATAGTGGCTATTG+CGG - chr8_2:16139792-16139811 Msa1236890:intron 40.0%
GCTGTAGCACTATAGCTAAA+CGG - chr8_2:16139816-16139835 Msa1236890:intron 40.0%
CAAATTTAATTGTCGGGGAG+TGG - chr8_2:16139976-16139995 Msa1236890:intron 40.0%
CTATTGAACAACATCAGCCA+GGG + chr8_2:16140061-16140080 None:intergenic 40.0%
CTGATGTTGTTCAATAGCCA+GGG - chr8_2:16140064-16140083 Msa1236890:intron 40.0%
GCACACAACTACACTGATAA+TGG + chr8_2:16140174-16140193 None:intergenic 40.0%
AAGGAGAAAAATGAGAGGTC+AGG + chr8_2:16140199-16140218 None:intergenic 40.0%
!! TGACCTCTCATTTTTCTCCT+TGG - chr8_2:16140198-16140217 Msa1236890:intron 40.0%
!! CTCTCATTTTTCTCCTTGGT+GGG - chr8_2:16140202-16140221 Msa1236890:intron 40.0%
CTTGCTAACTAACTACCTAG+GGG + chr8_2:16140231-16140250 None:intergenic 40.0%
! CACTTGCTAACTAACTACCT+AGG + chr8_2:16140233-16140252 None:intergenic 40.0%
AGTGAGTTAGGGAGACAATT+AGG - chr8_2:16140249-16140268 Msa1236890:intron 40.0%
TAAAAGGGATTGAGCATGAG+GGG - chr8_2:16140297-16140316 Msa1236890:intron 40.0%
AACAGGTTGCAGAACTTTGA+GGG + chr8_2:16140351-16140370 None:intergenic 40.0%
TAACAGGTTGCAGAACTTTG+AGG + chr8_2:16140352-16140371 None:intergenic 40.0%
GTGAATCCGTGATACAATGT+CGG - chr8_2:16140402-16140421 Msa1236890:intron 40.0%
AGAGTAACTCTGGATGACAT+AGG - chr8_2:16140559-16140578 Msa1236890:intron 40.0%
GGACTATCTTCTACAGCATT+TGG - chr8_2:16140630-16140649 Msa1236890:intron 40.0%
TTTCTTCAGTAACTCAAGGC+AGG + chr8_2:16140678-16140697 None:intergenic 40.0%
! GAACATTAACAAGGGCACAT+GGG + chr8_2:16140785-16140804 None:intergenic 40.0%
! TGAACATTAACAAGGGCACA+TGG + chr8_2:16140786-16140805 None:intergenic 40.0%
TGGATTGATTGCATGAGTTG+TGG + chr8_2:16140836-16140855 None:intergenic 40.0%
! TGTCGTACTGAGGAACATTT+TGG - chr8_2:16140904-16140923 Msa1236890:intron 40.0%
TTGCCTCGGCTATATATAAG+AGG - chr8_2:16140945-16140964 Msa1236890:intron 40.0%
TGCCTCGGCTATATATAAGA+GGG - chr8_2:16140946-16140965 Msa1236890:intron 40.0%
ATCCCTCTTATATATAGCCG+AGG + chr8_2:16140951-16140970 None:intergenic 40.0%
! ATTTGTTGCAGAGTAGCTAG+GGG - chr8_2:16141486-16141505 Msa1236890:five_prime_UTR 40.0%
! ATGATGGTGAATTCACCTGA+TGG - chr8_2:16141528-16141547 Msa1236890:five_prime_UTR 40.0%
!! AATTCACCTGATGGTGGAAA+AGG - chr8_2:16141537-16141556 Msa1236890:five_prime_UTR 40.0%
! GTCTTCCTTTTCCCAGTTTT+TGG - chr8_2:16141636-16141655 Msa1236890:intron 40.0%
TATCCAGTGCTCCAAAAACT+GGG + chr8_2:16141650-16141669 None:intergenic 40.0%
ATATCCAGTGCTCCAAAAAC+TGG + chr8_2:16141651-16141670 None:intergenic 40.0%
ACAATCACGAGTACTACCGA+AGG - chr8_2:16135842-16135861 Msa1236890:three_prime_UTR 45.0%
!!! AGGTGATTTGGTGGGTTTTG+TGG - chr8_2:16136204-16136223 Msa1236890:intron 45.0%
!!! GGTGATTTGGTGGGTTTTGT+GGG - chr8_2:16136205-16136224 Msa1236890:intron 45.0%
AGAAAAGGGGTGGAACCAAA+GGG + chr8_2:16136562-16136581 None:intergenic 45.0%
AAGAAAAGGGGTGGAACCAA+AGG + chr8_2:16136563-16136582 None:intergenic 45.0%
! CTAGAATTCCGAAGCACCAA+AGG - chr8_2:16136877-16136896 Msa1236890:intron 45.0%
! TGATGTGTCACTGTTGTGTC+TGG - chr8_2:16136978-16136997 Msa1236890:intron 45.0%
!! CAGATCATTAGCTTTGGGCA+TGG - chr8_2:16137134-16137153 Msa1236890:intron 45.0%
! CAAAGCTGTCGGTTATTGGA+AGG + chr8_2:16137545-16137564 None:intergenic 45.0%
CAGAACCTGATCAAAGCTGT+CGG + chr8_2:16137556-16137575 None:intergenic 45.0%
! ACAGCTTTGATCAGGTTCTG+TGG - chr8_2:16137556-16137575 Msa1236890:intron 45.0%
! TTTTTGAATCCTCAGGACCG+AGG - chr8_2:16138057-16138076 Msa1236890:intron 45.0%
! TTTTGAATCCTCAGGACCGA+GGG - chr8_2:16138058-16138077 Msa1236890:intron 45.0%
TCTCAAGAGAGACAAGTGCT+CGG - chr8_2:16138264-16138283 Msa1236890:intron 45.0%
! CGACTTGGATATACTCAAGG+AGG - chr8_2:16138298-16138317 Msa1236890:intron 45.0%
TCAAGGAGGCTTTCCAACTA+AGG - chr8_2:16138312-16138331 Msa1236890:intron 45.0%
CAAGGAGGCTTTCCAACTAA+GGG - chr8_2:16138313-16138332 Msa1236890:intron 45.0%
CTTACAGCAGGCAAATCGAT+GGG + chr8_2:16138347-16138366 None:intergenic 45.0%
TCTTACAGCAGGCAAATCGA+TGG + chr8_2:16138348-16138367 None:intergenic 45.0%
CCGCCTATTAGGGAAAATCA+AGG + chr8_2:16138499-16138518 None:intergenic 45.0%
TTTCCCTAATAGGCGGAGAA+AGG - chr8_2:16138503-16138522 Msa1236890:intron 45.0%
GAAGCACAAAGACAGGGATA+AGG - chr8_2:16138583-16138602 Msa1236890:intron 45.0%
CAAAGACAGGGATAAGGACA+AGG - chr8_2:16138589-16138608 Msa1236890:intron 45.0%
GAAGCACAAACATCGTCACA+AGG - chr8_2:16138625-16138644 Msa1236890:intron 45.0%
! CTCTGTTTAGGATCCAGTGA+AGG - chr8_2:16138900-16138919 Msa1236890:intron 45.0%
TCGAACAGTGTTGTCAATGG+CGG + chr8_2:16139114-16139133 None:intergenic 45.0%
TTTCTGTCCCAGCACATTTC+TGG - chr8_2:16139331-16139350 Msa1236890:intron 45.0%
CAATTCTTGAGCTCTTGTGC+TGG + chr8_2:16139426-16139445 None:intergenic 45.0%
! TGATGAGTTGGGGGCAATAA+AGG - chr8_2:16139444-16139463 Msa1236890:CDS 45.0%
ATTTAATTGTCGGGGAGTGG+AGG - chr8_2:16139979-16139998 Msa1236890:intron 45.0%
GCTATTGAACAACATCAGCC+AGG + chr8_2:16140062-16140081 None:intergenic 45.0%
GCTGATGTTGTTCAATAGCC+AGG - chr8_2:16140063-16140082 Msa1236890:intron 45.0%
CCACCAAGGAGAAAAATGAG+AGG + chr8_2:16140204-16140223 None:intergenic 45.0%
!! CCTCTCATTTTTCTCCTTGG+TGG - chr8_2:16140201-16140220 Msa1236890:intron 45.0%
!! GTGTTTTGTCGTTTGAGAGG+AGG - chr8_2:16140319-16140338 Msa1236890:intron 45.0%
TTCTTCGCTGACGATGATAC+AGG - chr8_2:16140511-16140530 Msa1236890:intron 45.0%
TGACGATGATACAGGTAGAG+AGG - chr8_2:16140519-16140538 Msa1236890:intron 45.0%
TCCAGCAACTAGAGTAACTC+TGG - chr8_2:16140549-16140568 Msa1236890:intron 45.0%
TCCAGAGTTACTCTAGTTGC+TGG + chr8_2:16140553-16140572 None:intergenic 45.0%
TATTGTGAGAGAAAGGGAGG+AGG - chr8_2:16140594-16140613 Msa1236890:intron 45.0%
ATTGTGAGAGAAAGGGAGGA+GGG - chr8_2:16140595-16140614 Msa1236890:intron 45.0%
ATAAGCCAAGTAAGTCCAGC+AGG - chr8_2:16140731-16140750 Msa1236890:intron 45.0%
TCTAACCTGCTGGACTTACT+TGG + chr8_2:16140739-16140758 None:intergenic 45.0%
!!! GTTTTGTAGCTCTAACCTGC+TGG + chr8_2:16140749-16140768 None:intergenic 45.0%
CTGTCTATCACCTCTAAACC+AGG - chr8_2:16140808-16140827 Msa1236890:intron 45.0%
! TTTGTCAGAGGTGCACAATC+CGG - chr8_2:16141156-16141175 Msa1236890:intron 45.0%
ATGGTGAATTCACCTGATGG+TGG - chr8_2:16141531-16141550 Msa1236890:five_prime_UTR 45.0%
GTGCTCCAAAAACTGGGAAA+AGG + chr8_2:16141644-16141663 None:intergenic 45.0%
!!! TTTCCCAGTTTTTGGAGCAC+TGG - chr8_2:16141644-16141663 Msa1236890:intron 45.0%
TCGACGGATGGATCTGTATA+TGG - chr8_2:16141855-16141874 Msa1236890:five_prime_UTR 45.0%
!! TGAAATTATTATAATAATTT+GGG + chr8_2:16141269-16141288 None:intergenic 5.0%
!! GGTGGGTTTTGTGGGAATTG+AGG - chr8_2:16136213-16136232 Msa1236890:intron 50.0%
!!! GTGCTGTTTTTTCCCCCCTT+TGG - chr8_2:16136544-16136563 Msa1236890:intron 50.0%
AAAAGGGGTGGAACCAAAGG+GGG + chr8_2:16136560-16136579 None:intergenic 50.0%
GAAAAGGGGTGGAACCAAAG+GGG + chr8_2:16136561-16136580 None:intergenic 50.0%
CAACAGTGACACATCAGCAC+CGG + chr8_2:16136974-16136993 None:intergenic 50.0%
CACTACCTGCACAGTGTAGT+AGG - chr8_2:16138179-16138198 Msa1236890:three_prime_UTR 50.0%
TGTCTCCTACTACACTGTGC+AGG + chr8_2:16138187-16138206 None:intergenic 50.0%
TCGGATACAGCCTTTCGACT+TGG - chr8_2:16138283-16138302 Msa1236890:intron 50.0%
! TGGGAGCTGTTTCCCTTAGT+TGG + chr8_2:16138328-16138347 None:intergenic 50.0%
ACAGGGATAAGGACAAGGAC+AGG - chr8_2:16138594-16138613 Msa1236890:intron 50.0%
CAGGGATAAGGACAAGGACA+GGG - chr8_2:16138595-16138614 Msa1236890:intron 50.0%
TTGGGGGCAATAAAGGTTGC+TGG - chr8_2:16139451-16139470 Msa1236890:CDS 50.0%
CTACCAGCGTTCTCGAATAG+TGG - chr8_2:16139783-16139802 Msa1236890:intron 50.0%
TAGCCACTATTCGAGAACGC+TGG + chr8_2:16139789-16139808 None:intergenic 50.0%
GCTGCGCTACAGTGATATAG+CGG + chr8_2:16139897-16139916 None:intergenic 50.0%
ACACACTGAATCTGCAACCC+TGG + chr8_2:16140084-16140103 None:intergenic 50.0%
!! GGGGTGTTTTGTCGTTTGAG+AGG - chr8_2:16140316-16140335 Msa1236890:intron 50.0%
TGCATCCTACCCTCCAAGAT+CGG + chr8_2:16140450-16140469 None:intergenic 50.0%
! CATCGTCAGCGAAGAAGCAT+CGG + chr8_2:16140507-16140526 None:intergenic 50.0%
! ACAAGGGCACATGGGTATCA+TGG + chr8_2:16140777-16140796 None:intergenic 50.0%
AGTTGTGGCTCCTGGTTTAG+AGG + chr8_2:16140821-16140840 None:intergenic 50.0%
ATTGCATGAGTTGTGGCTCC+TGG + chr8_2:16140829-16140848 None:intergenic 50.0%
ACTAACACACCAGAGTCAGG+AGG + chr8_2:16140867-16140886 None:intergenic 50.0%
TCCTGACTCTGGTGTGTTAG+TGG - chr8_2:16140866-16140885 Msa1236890:intron 50.0%
GGGAAAAGAGTGATACGAGC+CGG + chr8_2:16141246-16141265 None:intergenic 50.0%
TTTCACCCTGTGGGAATCAC+TGG - chr8_2:16141284-16141303 Msa1236890:intron 50.0%
TTCACCCTGTGGGAATCACT+GGG - chr8_2:16141285-16141304 Msa1236890:intron 50.0%
AACTCCCAGTGATTCCCACA+GGG + chr8_2:16141292-16141311 None:intergenic 50.0%
AAACTCCCAGTGATTCCCAC+AGG + chr8_2:16141293-16141312 None:intergenic 50.0%
! CTGCTTCCTTTTCCACCATC+AGG + chr8_2:16141546-16141565 None:intergenic 50.0%
!! CTGATGGTGGAAAAGGAAGC+AGG - chr8_2:16141544-16141563 Msa1236890:five_prime_UTR 50.0%
AAAGGGGTGGAACCAAAGGG+GGG + chr8_2:16136559-16136578 None:intergenic 55.0%
!! CAGACACGCCTTTGGTGCTT+CGG + chr8_2:16136888-16136907 None:intergenic 55.0%
! CACCAAAGGCGTGTCTGACA+CGG - chr8_2:16136891-16136910 Msa1236890:intron 55.0%
! ACCAAAGGCGTGTCTGACAC+GGG - chr8_2:16136892-16136911 Msa1236890:intron 55.0%
ACAGCACCTGTCAACTCCCT+CGG + chr8_2:16138077-16138096 None:intergenic 55.0%
TCCGCGATTGACACAGGAAG+CGG + chr8_2:16138155-16138174 None:intergenic 55.0%
TGTGTGTCCGCGATTGACAC+AGG + chr8_2:16138161-16138180 None:intergenic 55.0%
!! GTGTTGTCAATGGCGGATCG+TGG + chr8_2:16139107-16139126 None:intergenic 55.0%
GGAGTGGAGGAAGAGGGAAT+TGG - chr8_2:16139992-16140011 Msa1236890:intron 55.0%
TACCTAGGGGTAACCCACCA+AGG + chr8_2:16140218-16140237 None:intergenic 55.0%
!! ATCGGCATCAGTGCCGATCT+TGG - chr8_2:16140434-16140453 Msa1236890:intron 55.0%
!! GCATCAGTGCCGATCTTGGA+GGG - chr8_2:16140438-16140457 Msa1236890:intron 55.0%
TGAGAGAAAGGGAGGAGGGA+AGG - chr8_2:16140599-16140618 Msa1236890:intron 55.0%
GAGAGAAAGGGAGGAGGGAA+GGG - chr8_2:16140600-16140619 Msa1236890:intron 55.0%
GGAGGAGGGAAGGGTAGTAA+TGG - chr8_2:16140609-16140628 Msa1236890:intron 55.0%
AGAGTCAGGAGGTGGAGGTT+TGG + chr8_2:16140856-16140875 None:intergenic 55.0%
AAACCTCCACCTCCTGACTC+TGG - chr8_2:16140855-16140874 Msa1236890:intron 55.0%
AACACACCAGAGTCAGGAGG+TGG + chr8_2:16140864-16140883 None:intergenic 55.0%
GCCACTAACACACCAGAGTC+AGG + chr8_2:16140870-16140889 None:intergenic 55.0%
TCCCGTGTCAGACACGCCTT+TGG + chr8_2:16136896-16136915 None:intergenic 60.0%
TGTCAACTCCCTCGGTCCTG+AGG + chr8_2:16138069-16138088 None:intergenic 60.0%
TCAGGACCGAGGGAGTTGAC+AGG - chr8_2:16138068-16138087 Msa1236890:intron 60.0%
! GAGGGAGTTGACAGGTGCTG+TGG - chr8_2:16138076-16138095 Msa1236890:intron 60.0%
GCCGCTTCCTGTGTCAATCG+CGG - chr8_2:16138151-16138170 Msa1236890:three_prime_UTR 60.0%
TTGTCGGGGAGTGGAGGAAG+AGG - chr8_2:16139985-16140004 Msa1236890:intron 60.0%
TGTCGGGGAGTGGAGGAAGA+GGG - chr8_2:16139986-16140005 Msa1236890:intron 60.0%
!! CTCCTTGGTGGGTTACCCCT+AGG - chr8_2:16140213-16140232 Msa1236890:intron 60.0%
!! GGCATCAGTGCCGATCTTGG+AGG - chr8_2:16140437-16140456 Msa1236890:intron 60.0%
!! CAGTGCCGATCTTGGAGGGT+AGG - chr8_2:16140442-16140461 Msa1236890:intron 60.0%
ACACCAGAGTCAGGAGGTGG+AGG + chr8_2:16140861-16140880 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 16135774 16141931 16135774 ID=Msa1236890;Name=Msa1236890
chr8_2 mRNA 16135774 16141931 16135774 ID=Msa1236890-mRNA-1;Parent=Msa1236890;Name=Msa1236890-mRNA-1;_AED=0.11;_eAED=0.11;_QI=376|1|1|1|0.62|0.44|9|445|218
chr8_2 exon 16135774 16136053 16135774 ID=Msa1236890-mRNA-1:exon:6047;Parent=Msa1236890-mRNA-1
chr8_2 exon 16136140 16136208 16136140 ID=Msa1236890-mRNA-1:exon:6046;Parent=Msa1236890-mRNA-1
chr8_2 exon 16138132 16138278 16138132 ID=Msa1236890-mRNA-1:exon:6045;Parent=Msa1236890-mRNA-1
chr8_2 exon 16138423 16138482 16138423 ID=Msa1236890-mRNA-1:exon:6044;Parent=Msa1236890-mRNA-1
chr8_2 exon 16138966 16139190 16138966 ID=Msa1236890-mRNA-1:exon:6043;Parent=Msa1236890-mRNA-1
chr8_2 exon 16139344 16139633 16139344 ID=Msa1236890-mRNA-1:exon:6042;Parent=Msa1236890-mRNA-1
chr8_2 exon 16140070 16140145 16140070 ID=Msa1236890-mRNA-1:exon:6041;Parent=Msa1236890-mRNA-1
chr8_2 exon 16141454 16141576 16141454 ID=Msa1236890-mRNA-1:exon:6040;Parent=Msa1236890-mRNA-1
chr8_2 exon 16141724 16141931 16141724 ID=Msa1236890-mRNA-1:exon:6039;Parent=Msa1236890-mRNA-1
chr8_2 five_prime_UTR 16141724 16141931 16141724 ID=Msa1236890-mRNA-1:five_prime_utr;Parent=Msa1236890-mRNA-1
chr8_2 five_prime_UTR 16141454 16141576 16141454 ID=Msa1236890-mRNA-1:five_prime_utr;Parent=Msa1236890-mRNA-1
chr8_2 five_prime_UTR 16140101 16140145 16140101 ID=Msa1236890-mRNA-1:five_prime_utr;Parent=Msa1236890-mRNA-1
chr8_2 CDS 16140070 16140100 16140070 ID=Msa1236890-mRNA-1:cds;Parent=Msa1236890-mRNA-1
chr8_2 CDS 16139344 16139633 16139344 ID=Msa1236890-mRNA-1:cds;Parent=Msa1236890-mRNA-1
chr8_2 CDS 16138966 16139190 16138966 ID=Msa1236890-mRNA-1:cds;Parent=Msa1236890-mRNA-1
chr8_2 CDS 16138423 16138482 16138423 ID=Msa1236890-mRNA-1:cds;Parent=Msa1236890-mRNA-1
chr8_2 CDS 16138228 16138278 16138228 ID=Msa1236890-mRNA-1:cds;Parent=Msa1236890-mRNA-1
chr8_2 three_prime_UTR 16138132 16138227 16138132 ID=Msa1236890-mRNA-1:three_prime_utr;Parent=Msa1236890-mRNA-1
chr8_2 three_prime_UTR 16136140 16136208 16136140 ID=Msa1236890-mRNA-1:three_prime_utr;Parent=Msa1236890-mRNA-1
chr8_2 three_prime_UTR 16135774 16136053 16135774 ID=Msa1236890-mRNA-1:three_prime_utr;Parent=Msa1236890-mRNA-1
Gene Sequence

>Msa1236890

ATGGATCCTGAAGGAAAAAAGTTTGGAGGAGGACCGAGGGAGTTGACAGGTGCTGTGGATCTCATAAGTCATTTCAAATTAATACCGCACTATGAATTTTTCTGCAAGAGGCCGCTTCCTGTGTCAATCGCGGACACACACTACCTGCACAGTGTAGTAGGAGACACAGAAGTAAGAAAAGGAGATGGCATGCAATTGGACGAACTCATTCAGAATACATCTTTCTCAAGAGAGACAAGTGCTCGGATACAGCCTTTCGACTTGGATATACTCAAGGAGGCTTTCCAACTAAGGGAAACAGCTCCCATCGATTTGCCTGCTGCGGAGAAAGGAATACCAACAATTGCAGGAAAATCAAAAAGTGAGAAAGACAAAGAGAAGAAGCATAAGAAGCACAAAGACAGGGATAAGGACAAGGACAGGGAGCATAAGAAGCACAAACATCGTCACAAGGACAGAAGCAAAGACAAAGACAAGGACAAAAAGAAAGACAAAAGCGGGCATCGTGATTCCAGTGCTGATCACTCAAAGAAACATCATGAAAAGAAGAGGAAGCATGACGGAGATGATGATGCTAATGATGTGCACAAACACAAAAAGAGTAAGCACAAGAGCTCAAGAATTGATGAGTTGGGGGCAATAAAGGTTGCTGGCTGA

Protein sequence

>Msa1236890

MDPEGKKFGGGPRELTGAVDLISHFKLIPHYEFFCKRPLPVSIADTHYLHSVVGDTEVRKGDGMQLDELIQNTSFSRETSARIQPFDLDILKEAFQLRETAPIDLPAAEKGIPTIAGKSKSEKDKEKKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHRDSSADHSKKHHEKKRKHDGDDDANDVHKHKKSKHKSSRIDELGAIKVAG*