AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008821

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008821.t1 MTR_8g445780 70.000 310 86 2 1 308 86 390 1.02e-149 427
MS.gene008821.t1 MTR_8g014260 59.331 359 139 4 1 355 96 451 1.76e-131 383
MS.gene008821.t1 MTR_4g024710 62.712 295 107 3 63 355 54 347 8.31e-117 342
MS.gene008821.t1 MTR_8g014210 72.414 232 63 1 124 355 1 231 2.38e-113 329
MS.gene008821.t1 MTR_4g024745 61.679 274 102 3 67 338 12 284 6.92e-100 297
MS.gene008821.t1 MTR_8g062270 47.429 350 158 11 17 354 118 453 2.95e-87 270
MS.gene008821.t1 MTR_8g468810 47.671 365 173 9 1 355 107 463 3.55e-87 270
MS.gene008821.t1 MTR_2g083840 47.671 365 172 9 1 355 102 457 2.85e-86 268
MS.gene008821.t1 MTR_8g058970 47.309 353 165 11 16 355 133 477 9.55e-82 257
MS.gene008821.t1 MTR_5g092960 44.715 369 177 9 3 355 105 462 1.09e-77 246
MS.gene008821.t1 MTR_4g032730 44.241 382 168 12 3 355 102 467 7.88e-76 241
MS.gene008821.t1 MTR_8g468840 44.167 360 182 9 3 353 99 448 1.56e-74 238
MS.gene008821.t1 MTR_8g468760 42.149 363 158 11 3 354 97 418 8.82e-68 219
MS.gene008821.t1 MTR_8g467800 43.056 360 169 12 15 355 111 453 2.80e-67 219
MS.gene008821.t1 MTR_8g468810 48.000 275 129 7 1 269 107 373 7.92e-63 205
MS.gene008821.t1 MTR_8g058965 39.831 354 183 11 21 355 114 456 4.13e-57 192
MS.gene008821.t1 MTR_8g469020 37.088 364 200 11 11 355 98 451 1.96e-54 185
MS.gene008821.t1 MTR_8g014160 36.538 364 158 9 1 355 126 425 2.18e-53 182
MS.gene008821.t1 MTR_8g077460 63.699 146 52 1 210 355 231 375 2.46e-53 180
MS.gene008821.t1 MTR_8g077460 47.518 141 67 3 1 139 92 227 2.95e-29 116
MS.gene008821.t1 MTR_5g092960 45.324 278 134 6 3 270 105 374 6.82e-53 180
MS.gene008821.t1 MTR_8g062310 37.901 343 180 12 18 355 114 428 1.02e-50 175
MS.gene008821.t1 MTR_8g468810 47.867 211 103 3 1 211 107 310 9.46e-50 169
MS.gene008821.t1 MTR_8g468810 47.867 211 103 3 1 211 107 310 1.01e-49 169
MS.gene008821.t1 MTR_8g468810 47.867 211 103 3 1 211 107 310 1.85e-49 169
MS.gene008821.t1 MTR_8g062080 36.164 365 193 15 4 355 108 445 4.34e-48 168
MS.gene008821.t1 MTR_8g062010 38.261 345 184 12 18 355 108 430 1.46e-46 164
MS.gene008821.t1 MTR_8g070950 34.746 354 188 13 18 355 108 434 3.46e-44 158
MS.gene008821.t1 MTR_4g050250 38.562 306 154 10 18 299 123 418 6.27e-41 149
MS.gene008821.t1 MTR_8g062300 34.054 370 195 12 18 355 125 477 5.47e-40 147
MS.gene008821.t1 MTR_8g467800 43.269 208 101 7 15 215 111 308 3.70e-29 115
MS.gene008821.t1 MTR_8g014230 63.529 85 29 2 271 355 22 104 4.83e-27 103
MS.gene008821.t1 MTR_5g084070 31.268 339 207 12 18 348 100 420 2.60e-26 108
MS.gene008821.t1 MTR_2g086020 48.092 131 66 2 227 355 185 315 2.76e-25 104
MS.gene008821.t1 MTR_8g467790 33.681 288 142 12 21 300 248 494 4.15e-25 106
MS.gene008821.t1 MTR_5g080710 30.117 342 211 13 18 348 123 447 2.86e-20 92.0
MS.gene008821.t1 MTR_1g041245 26.781 351 179 13 18 355 101 386 7.11e-17 81.3
MS.gene008821.t1 MTR_3g087260 26.842 380 218 13 22 354 90 456 3.37e-16 79.7
MS.gene008821.t1 MTR_3g108560 27.673 318 169 11 46 354 123 388 4.53e-16 79.0
MS.gene008821.t1 MTR_5g058000 29.226 349 161 17 17 354 101 374 1.59e-15 77.4
MS.gene008821.t1 MTR_8g014290 55.000 60 26 1 3 61 100 159 1.84e-14 70.9
MS.gene008821.t1 MTR_1g038710 29.129 333 192 14 18 322 111 427 2.27e-14 74.3
MS.gene008821.t1 MTR_4g113810 33.333 180 93 9 1 168 1 165 4.34e-14 69.7
MS.gene008821.t1 MTR_3g107100 26.420 352 185 15 20 355 105 398 4.49e-14 73.2
MS.gene008821.t1 MTR_7g098510 35.606 132 79 4 230 355 260 391 1.84e-13 71.2
MS.gene008821.t1 MTR_5g021550 56.452 62 26 1 1 61 101 162 2.49e-13 67.8
MS.gene008821.t1 MTR_8g014220 40.351 114 54 6 1 111 58 160 7.83e-13 66.2
MS.gene008821.t1 MTR_5g008950 25.957 235 136 8 150 355 140 365 3.64e-12 67.4
MS.gene008821.t1 MTR_7g098480 26.603 312 166 12 48 354 135 388 4.23e-12 67.4
MS.gene008821.t1 MTR_7g098570 26.733 303 179 12 60 351 119 389 5.38e-12 67.0
MS.gene008821.t1 MTR_3g115430 35.455 110 65 3 248 355 20 125 6.60e-12 62.4
MS.gene008821.t1 MTR_4g056070 27.914 326 185 14 13 308 132 437 7.01e-12 66.6
MS.gene008821.t1 MTR_4g055990 25.464 377 212 15 13 349 129 476 1.26e-11 66.2
MS.gene008821.t1 MTR_4g055990 25.464 377 212 15 13 349 129 476 1.45e-11 65.9
MS.gene008821.t1 MTR_7g032380 33.065 124 78 3 236 355 234 356 2.04e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008821.t1 AT4G26340 28.732 355 221 14 13 355 85 419 2.23e-24 103
MS.gene008821.t1 AT4G00160 29.973 367 212 17 11 355 99 442 6.29e-23 99.8
MS.gene008821.t1 AT3G50710 31.129 363 202 18 13 352 87 424 6.10e-22 96.7
MS.gene008821.t1 AT4G10400 28.161 348 208 18 18 354 92 408 3.55e-21 94.4
MS.gene008821.t1 AT4G10400 28.161 348 208 18 18 354 92 408 3.55e-21 94.4
MS.gene008821.t1 AT4G10400 28.161 348 208 18 18 354 92 408 3.55e-21 94.4
MS.gene008821.t1 AT4G26350 26.790 377 219 16 8 355 80 428 1.41e-20 92.8
MS.gene008821.t1 AT5G56420 27.089 347 218 13 21 355 99 422 2.88e-20 91.7
MS.gene008821.t1 AT5G56420 27.089 347 218 13 21 355 99 422 2.88e-20 91.7
MS.gene008821.t1 AT5G56420 27.089 347 218 13 21 355 99 422 2.88e-20 91.7
MS.gene008821.t1 AT5G56380 29.688 384 207 17 6 354 83 438 9.22e-20 90.5
MS.gene008821.t1 AT5G56380 29.688 384 207 17 6 354 83 438 9.22e-20 90.5
MS.gene008821.t1 AT1G32375 26.197 355 232 11 13 355 86 422 3.48e-19 88.6
MS.gene008821.t1 AT1G32375 26.197 355 232 11 13 355 86 422 3.48e-19 88.6
MS.gene008821.t1 AT3G52680 30.986 355 205 17 21 355 111 445 2.45e-18 86.3
MS.gene008821.t1 AT3G54910 29.178 353 216 16 12 355 46 373 3.03e-17 82.4
MS.gene008821.t1 AT3G54910 29.178 353 216 16 12 355 46 373 3.03e-17 82.4
MS.gene008821.t1 AT3G54910 29.178 353 216 16 12 355 46 373 3.03e-17 82.4
MS.gene008821.t1 AT5G56390 28.231 294 185 9 74 354 144 424 3.18e-17 82.8
MS.gene008821.t1 AT1G78750 25.915 355 228 14 18 352 116 455 3.06e-16 80.1
MS.gene008821.t1 AT1G78750 25.915 355 228 14 18 352 116 455 3.06e-16 80.1
MS.gene008821.t1 AT3G26920 29.050 358 211 17 14 354 8 339 4.26e-16 79.0
MS.gene008821.t1 AT3G26920 29.050 358 211 17 14 354 8 339 4.26e-16 79.0
MS.gene008821.t1 AT4G10420 26.453 344 219 13 21 354 2 321 6.59e-16 78.2
MS.gene008821.t1 AT5G38570 27.465 284 160 10 90 354 119 375 7.49e-16 78.6
MS.gene008821.t1 AT5G56370 27.297 370 209 14 12 354 84 420 7.68e-16 78.6
MS.gene008821.t1 AT5G56370 27.297 370 209 14 12 354 84 420 7.68e-16 78.6
MS.gene008821.t1 AT5G50270 26.453 344 213 13 13 337 86 408 5.87e-15 75.9
MS.gene008821.t1 AT5G56700 26.970 330 203 14 9 322 43 350 7.75e-15 75.1
MS.gene008821.t1 AT5G53840 24.791 359 236 14 10 352 97 437 1.21e-14 75.1
MS.gene008821.t1 AT1G16930 24.523 367 220 15 19 352 104 446 7.16e-14 72.8
MS.gene008821.t1 AT1G16930 24.523 367 220 15 19 352 104 446 7.16e-14 72.8
MS.gene008821.t1 AT1G16930 24.523 367 220 15 19 352 104 446 7.16e-14 72.8
MS.gene008821.t1 AT5G56325 26.894 264 170 8 103 354 11 263 8.04e-14 71.2
MS.gene008821.t1 AT5G56440 25.543 368 224 13 13 354 86 429 8.61e-14 72.4
MS.gene008821.t1 AT5G56452 26.840 231 149 7 127 352 8 223 3.65e-13 68.6
MS.gene008821.t1 AT1G78760 25.967 362 223 17 14 352 101 440 3.92e-13 70.5
MS.gene008821.t1 AT5G56560 25.356 351 222 15 18 355 95 418 4.70e-13 70.1
MS.gene008821.t1 AT5G56452 26.840 231 150 7 127 352 8 224 1.09e-12 67.4
MS.gene008821.t1 AT5G56800 27.429 350 201 20 27 355 27 344 1.27e-12 68.6
MS.gene008821.t1 AT1G06630 27.306 271 179 8 1 265 95 353 4.41e-12 67.4
MS.gene008821.t1 AT1G06630 27.306 271 179 8 1 265 95 353 4.41e-12 67.4
MS.gene008821.t1 AT1G06630 27.306 271 179 8 1 265 95 353 4.41e-12 67.4
MS.gene008821.t1 AT1G06630 27.306 271 179 8 1 265 95 353 4.41e-12 67.4
MS.gene008821.t1 AT1G06630 27.407 270 178 8 1 264 95 352 4.90e-12 67.0
MS.gene008821.t1 AT1G06630 27.407 270 178 8 1 264 95 352 4.90e-12 67.0
MS.gene008821.t1 AT1G06630 28.044 271 177 9 1 265 104 362 5.79e-12 67.0
MS.gene008821.t1 AT1G06630 27.306 271 179 8 1 265 95 353 8.57e-12 66.6
MS.gene008821.t1 AT2G26030 24.863 366 239 11 10 352 13 365 1.95e-11 65.1
MS.gene008821.t1 AT2G26030 24.863 366 239 11 10 352 86 438 2.01e-11 65.5
MS.gene008821.t1 AT2G26030 24.863 366 239 11 10 352 86 438 2.01e-11 65.5
MS.gene008821.t1 AT2G26030 24.731 372 237 12 10 352 86 443 2.20e-11 65.1
MS.gene008821.t1 AT3G49030 28.571 287 178 12 82 354 167 440 3.34e-11 64.7
MS.gene008821.t1 AT1G13780 23.692 325 218 9 48 352 138 452 4.14e-11 64.3
MS.gene008821.t1 AT3G49020 28.896 308 174 15 74 355 157 445 7.30e-11 63.5
MS.gene008821.t1 AT1G69630 25.143 350 227 13 18 347 109 443 7.56e-11 63.5
MS.gene008821.t1 AT5G53635 23.596 356 232 12 18 354 91 425 9.22e-11 63.2

Find 92 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTTCTTGGCGCTCTCTC+TGG 0.222591 8.1:+34782114 MS.gene008821:CDS
GAATGTCGTACTTCTTCTTT+AGG 0.305944 8.1:-34782913 None:intergenic
ACTCTATATGCTTGTTATTA+CGG 0.309039 8.1:+34780988 MS.gene008821:CDS
TCTTTGTTAATCAGTCTCTA+TGG 0.310114 8.1:+34781712 MS.gene008821:intron
TATGCTTGTTATTACGGTTC+CGG 0.320782 8.1:+34780994 MS.gene008821:CDS
ATCCCTTTACACAACCTTCT+TGG 0.322992 8.1:+34782102 MS.gene008821:CDS
TAGTTTCTCTCCGCAAAGTT+TGG 0.339315 8.1:+34781876 MS.gene008821:CDS
AAATTCTTTAAATTGAATAA+AGG 0.358875 8.1:-34782795 None:intergenic
AACATTACCCGAATCACATT+TGG 0.369562 8.1:+34782000 MS.gene008821:CDS
CGCCAAGAAGGTTGTGTAAA+GGG 0.386248 8.1:-34782104 None:intergenic
TTGGCACATCAGATAATGTT+TGG 0.386365 8.1:-34782937 None:intergenic
TCCAGCCTTCTTACGGAAGA+TGG 0.394716 8.1:-34781913 None:intergenic
ATTCAATTTAAAGAATTTCA+AGG 0.397138 8.1:+34782800 MS.gene008821:CDS
GATGTCTTTCCCCAATCGTT+TGG 0.397912 8.1:+34782072 MS.gene008821:CDS
ACCTTCTTGGCGCTCTCTCT+GGG 0.399525 8.1:+34782115 MS.gene008821:CDS
GATCAGGCGCATTTATTTCA+AGG 0.403961 8.1:-34781966 None:intergenic
AGGGTAGCCCATTCTAAAAT+TGG 0.410375 8.1:-34782737 None:intergenic
CCTGAGTGATACGAGGTTAG+AGG 0.411988 8.1:-34781046 None:intergenic
AGCTTGGCCAAATGTGATTC+GGG 0.414911 8.1:-34782007 None:intergenic
CAAACTTTGTCCAAACTTTG+CGG 0.419034 8.1:-34781886 None:intergenic
GATTACCGCTGATAGTTCAT+TGG 0.421500 8.1:+34782889 MS.gene008821:CDS
GAGGAAGTGAAAAGTGTTTG+AGG 0.430660 8.1:-34781027 None:intergenic
AAGCTTGGCCAAATGTGATT+CGG 0.437271 8.1:-34782008 None:intergenic
ATGTGATTCGGGTAATGTTA+AGG 0.445469 8.1:-34781996 None:intergenic
AACGTGAATGCACTTCTTTG+TGG 0.447771 8.1:+34781826 MS.gene008821:CDS
AACTTTATCGATTGAGTCGT+GGG 0.449141 8.1:+34780924 MS.gene008821:CDS
GGCGATTTCCAGCCTTCTTA+CGG 0.449202 8.1:-34781920 None:intergenic
CTTTAAATTGAATAAAGGTC+AGG 0.450396 8.1:-34782790 None:intergenic
TCTGATGTGCCAAGGGCCTC+AGG 0.454537 8.1:+34782947 MS.gene008821:CDS
AACTTAACCATGGTTGTTGA+AGG 0.457176 8.1:-34782159 None:intergenic
CAGGTGCGATACGAGACAAT+TGG 0.467374 8.1:-34782771 None:intergenic
TCGCCAATGAGGATGAAGTT+GGG 0.469081 8.1:+34781938 MS.gene008821:CDS
GCCTAGAGCTCAATCTTCCC+TGG 0.469450 8.1:+34782418 MS.gene008821:CDS
GACAATTGGGAACACTTGGC+AGG 0.470535 8.1:-34782757 None:intergenic
CCCATCTTCCGTAAGAAGGC+TGG 0.470819 8.1:+34781912 MS.gene008821:CDS
GATGACAGAACCAAACGATT+GGG 0.471945 8.1:-34782082 None:intergenic
AACCCCAACTTCATCCTCAT+TGG 0.472522 8.1:-34781941 None:intergenic
TCTCTCTGGGACTAAACATC+TGG 0.472916 8.1:+34782128 MS.gene008821:CDS
TCAACAAATGACACCTCATC+TGG 0.479159 8.1:-34782827 None:intergenic
AGGTGCGATACGAGACAATT+GGG 0.480496 8.1:-34782770 None:intergenic
TCGTGGGTTCGTGCCGCCGT+TGG 0.486691 8.1:+34780940 MS.gene008821:CDS
ATTTGCAGTGTCTTTAATGA+TGG 0.487972 8.1:-34781778 None:intergenic
AAGTGAAAAGTGTTTGAGGT+AGG 0.492896 8.1:-34781023 None:intergenic
TGTTTGAGGTAGGTTGAATC+CGG 0.493042 8.1:-34781013 None:intergenic
GTGTCCCATCTTCCGTAAGA+AGG 0.494377 8.1:+34781908 MS.gene008821:CDS
ATCGCCAATGAGGATGAAGT+TGG 0.497075 8.1:+34781937 MS.gene008821:CDS
ATGTTAAGGTACTCAAGATC+AGG 0.497396 8.1:-34781982 None:intergenic
GCAAATCAGCATGGGTTATG+TGG 0.509391 8.1:+34781795 MS.gene008821:CDS
CCAGCCTTCTTACGGAAGAT+GGG 0.510309 8.1:-34781912 None:intergenic
AGATCAAGAGATTCAATGAT+GGG 0.510349 8.1:-34781853 None:intergenic
TGACACATTCCTGAGGCCCT+TGG 0.520521 8.1:-34782956 None:intergenic
ACCAGGGAAGATTGAGCTCT+AGG 0.521976 8.1:-34782419 None:intergenic
GGATGACAGAACCAAACGAT+TGG 0.529615 8.1:-34782083 None:intergenic
ATTATTAGAACTTGAAGCAT+GGG 0.531928 8.1:-34782480 None:intergenic
CAGAGAATTTGAGTTAAACC+AGG 0.532850 8.1:-34782436 None:intergenic
GCGCCAAGAAGGTTGTGTAA+AGG 0.540668 8.1:-34782105 None:intergenic
GAACTTTATCGATTGAGTCG+TGG 0.542146 8.1:+34780923 MS.gene008821:CDS
CGCCAATGAGGATGAAGTTG+GGG 0.543325 8.1:+34781939 MS.gene008821:CDS
AAGATCAAGAGATTCAATGA+TGG 0.544218 8.1:-34781854 None:intergenic
AGCTCGAGTTCATCAAGGTA+GGG 0.549139 8.1:-34780964 None:intergenic
TTCATCAAGGTAGGGTCCAA+CGG 0.557332 8.1:-34780956 None:intergenic
ACGAGACAATTGGGAACACT+TGG 0.559054 8.1:-34782761 None:intergenic
TCCCAGAGAGAGCGCCAAGA+AGG 0.560841 8.1:-34782116 None:intergenic
AATTATTAGAACTTGAAGCA+TGG 0.571659 8.1:-34782481 None:intergenic
GGCAAACTAACCACCGTGGA+GGG 0.575221 8.1:-34781757 None:intergenic
AAACATTATCTGATGTGCCA+AGG 0.577099 8.1:+34782939 MS.gene008821:CDS
AACATTATCTGATGTGCCAA+GGG 0.577206 8.1:+34782940 MS.gene008821:CDS
AGTTGTACATGCTGAAAGCT+TGG 0.596389 8.1:-34782023 None:intergenic
AAAGACACTGCAAATCAGCA+TGG 0.599276 8.1:+34781786 MS.gene008821:CDS
GAGTAAGCTCGAGTTCATCA+AGG 0.600720 8.1:-34780969 None:intergenic
AAGCTCGAGTTCATCAAGGT+AGG 0.612968 8.1:-34780965 None:intergenic
CATGGGACATTTCTGAAGCA+AGG 0.613005 8.1:-34782463 None:intergenic
GTTGAATCCTTCAACAACCA+TGG 0.615902 8.1:+34782152 MS.gene008821:CDS
AAGACACTGCAAATCAGCAT+GGG 0.617348 8.1:+34781787 MS.gene008821:CDS
AGAGAATTTGAGTTAAACCA+GGG 0.618533 8.1:-34782435 None:intergenic
ATGTACAAACAGTGGCTGCT+TGG 0.624830 8.1:+34782351 MS.gene008821:intron
TCTAATAATTCAGAATGACA+AGG 0.629883 8.1:+34782494 MS.gene008821:CDS
ACAATTGGGAACACTTGGCA+GGG 0.634349 8.1:-34782756 None:intergenic
ATGACAGAACCAAACGATTG+GGG 0.634767 8.1:-34782081 None:intergenic
CCTCTAACCTCGTATCACTC+AGG 0.636710 8.1:+34781046 MS.gene008821:CDS
ATTTCAAGGAATTCCAGATG+AGG 0.637246 8.1:+34782814 MS.gene008821:CDS
TGTATTCATCGAACCCTCCA+CGG 0.640389 8.1:+34781744 MS.gene008821:CDS
AAGGCTGGAAATCGCCAATG+AGG 0.649702 8.1:+34781927 MS.gene008821:CDS
GATCAAGAGATTCAATGATG+GGG 0.660131 8.1:-34781852 None:intergenic
GTACAACTTACACAATGTCG+TGG 0.661367 8.1:+34782038 MS.gene008821:CDS
TAGGTCCAATGAACTATCAG+CGG 0.669674 8.1:-34782894 None:intergenic
TGGCAAACTAACCACCGTGG+AGG 0.683102 8.1:-34781758 None:intergenic
TTTAAGTTGACACATTCCTG+AGG 0.695966 8.1:-34782963 None:intergenic
ATCAAGGTAGGGTCCAACGG+CGG 0.736817 8.1:-34780953 None:intergenic
ATGCATGCCTGAGTGATACG+AGG 0.769171 8.1:-34781053 None:intergenic
TGATGGCAAACTAACCACCG+TGG 0.771170 8.1:-34781761 None:intergenic
ATTCATCGAACCCTCCACGG+TGG 0.791933 8.1:+34781747 MS.gene008821:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAGAAAATTTAG+AGG + chr8.1:34781581-34781600 MS.gene008821:intron 10.0%
!! AAATTCTTTAAATTGAATAA+AGG - chr8.1:34782798-34782817 None:intergenic 10.0%
!! ACATAATAATTAGAAATTGT+TGG + chr8.1:34781352-34781371 MS.gene008821:intron 15.0%
!! ATTCAATTTAAAGAATTTCA+AGG + chr8.1:34782800-34782819 MS.gene008821:CDS 15.0%
!! TAAAAGAAAATTTAGATTAG+AGG + chr8.1:34781586-34781605 MS.gene008821:intron 15.0%
!!! AATTTTCTCATATATAAATC+TGG + chr8.1:34781111-34781130 MS.gene008821:intron 15.0%
!!! CAATATTCATTTTTTTGAAA+AGG - chr8.1:34782678-34782697 None:intergenic 15.0%
!! CTTGATAAAAGTTTATAAAG+AGG + chr8.1:34781467-34781486 MS.gene008821:intron 20.0%
!! GAAATAAAAAAACTTAACCA+TGG - chr8.1:34782172-34782191 None:intergenic 20.0%
!! TATGAGTAAATCATGATTAT+TGG - chr8.1:34782290-34782309 None:intergenic 20.0%
!! TGTAATCTATTCATAAAAAC+TGG - chr8.1:34782571-34782590 None:intergenic 20.0%
!! TTAATCTTGCTAATATTAAG+TGG - chr8.1:34782627-34782646 None:intergenic 20.0%
! AAGTTAAATTGACCAAATTC+AGG - chr8.1:34782534-34782553 None:intergenic 25.0%
! AATTATTAGAACTTGAAGCA+TGG - chr8.1:34782484-34782503 None:intergenic 25.0%
! ATTATTAGAACTTGAAGCAT+GGG - chr8.1:34782483-34782502 None:intergenic 25.0%
! ATTCTTGAAAAAGTAGATCA+TGG - chr8.1:34782383-34782402 None:intergenic 25.0%
! CATTTATACAGAGTATAAGT+TGG + chr8.1:34782227-34782246 MS.gene008821:intron 25.0%
! CTTTAAATTGAATAAAGGTC+AGG - chr8.1:34782793-34782812 None:intergenic 25.0%
! GATTGAGCTTATGAAAAATA+TGG - chr8.1:34781310-34781329 None:intergenic 25.0%
! TCTAATAATTCAGAATGACA+AGG + chr8.1:34782494-34782513 MS.gene008821:CDS 25.0%
! TTCTTGAAAAAGTAGATCAT+GGG - chr8.1:34782382-34782401 None:intergenic 25.0%
!! ACACTTTTCACATTATAAGT+CGG + chr8.1:34781492-34781511 MS.gene008821:intron 25.0%
!! CTTTTTCCTTCCATAAAATA+CGG - chr8.1:34781201-34781220 None:intergenic 25.0%
!!! ACAGTTACCAATTTTAGAAT+GGG + chr8.1:34782730-34782749 MS.gene008821:CDS 25.0%
!!! ACTCTATATGCTTGTTATTA+CGG + chr8.1:34780988-34781007 MS.gene008821:CDS 25.0%
!!! CATAAGTTATTTTCCAAATG+AGG + chr8.1:34781284-34781303 MS.gene008821:intron 25.0%
!!! TACAGTTACCAATTTTAGAA+TGG + chr8.1:34782729-34782748 MS.gene008821:CDS 25.0%
AAGATCAAGAGATTCAATGA+TGG - chr8.1:34781857-34781876 None:intergenic 30.0%
ACAGTAAGGAACAAATTTAG+AGG + chr8.1:34781547-34781566 MS.gene008821:intron 30.0%
AGATCAAGAGATTCAATGAT+GGG - chr8.1:34781856-34781875 None:intergenic 30.0%
ATGAAAAATATGGCCTCATT+TGG - chr8.1:34781300-34781319 None:intergenic 30.0%
ATTATTATGTAACCCGACTA+TGG - chr8.1:34781342-34781361 None:intergenic 30.0%
ATTTGCAGTGTCTTTAATGA+TGG - chr8.1:34781781-34781800 None:intergenic 30.0%
GTTCCTTACTGTTGAAATTT+GGG - chr8.1:34781539-34781558 None:intergenic 30.0%
TAAATTGACCAAATTCAGGT+TGG - chr8.1:34782530-34782549 None:intergenic 30.0%
TCTTGAAAAAGTAGATCATG+GGG - chr8.1:34782381-34782400 None:intergenic 30.0%
TCTTTGTTAATCAGTCTCTA+TGG + chr8.1:34781712-34781731 MS.gene008821:intron 30.0%
TGTTCCTTACTGTTGAAATT+TGG - chr8.1:34781540-34781559 None:intergenic 30.0%
TGTTTAATCCAACCTGAATT+TGG + chr8.1:34782519-34782538 MS.gene008821:intron 30.0%
TTCATAAGCTCAATCCAAAT+GGG + chr8.1:34781315-34781334 MS.gene008821:intron 30.0%
TTCCTTACTGTTGAAATTTG+GGG - chr8.1:34781538-34781557 None:intergenic 30.0%
TTTCATAAGCTCAATCCAAA+TGG + chr8.1:34781314-34781333 MS.gene008821:intron 30.0%
! AGAGAATTTGAGTTAAACCA+GGG - chr8.1:34782438-34782457 None:intergenic 30.0%
! CAAGCTTTTACCGTATTTTA+TGG + chr8.1:34781188-34781207 MS.gene008821:intron 30.0%
! CTTTTACCGTATTTTATGGA+AGG + chr8.1:34781192-34781211 MS.gene008821:intron 30.0%
AAACATTATCTGATGTGCCA+AGG + chr8.1:34782939-34782958 MS.gene008821:CDS 35.0%
AACATTACCCGAATCACATT+TGG + chr8.1:34782000-34782019 MS.gene008821:CDS 35.0%
AACATTATCTGATGTGCCAA+GGG + chr8.1:34782940-34782959 MS.gene008821:CDS 35.0%
AACTTAACCATGGTTGTTGA+AGG - chr8.1:34782162-34782181 None:intergenic 35.0%
ATTTCAAGGAATTCCAGATG+AGG + chr8.1:34782814-34782833 MS.gene008821:CDS 35.0%
CAAACTTTGTCCAAACTTTG+CGG - chr8.1:34781889-34781908 None:intergenic 35.0%
GAATGTCGTACTTCTTCTTT+AGG - chr8.1:34782916-34782935 None:intergenic 35.0%
GATCAAGAGATTCAATGATG+GGG - chr8.1:34781855-34781874 None:intergenic 35.0%
TAGTGTCACATCAGTTAGAT+AGG + chr8.1:34781441-34781460 MS.gene008821:intron 35.0%
TCATAAGCTCAATCCAAATG+GGG + chr8.1:34781316-34781335 MS.gene008821:intron 35.0%
TTGCATCTTATTCAAGTCCT+TGG + chr8.1:34782695-34782714 MS.gene008821:intron 35.0%
TTGGCACATCAGATAATGTT+TGG - chr8.1:34782940-34782959 None:intergenic 35.0%
! AACTTTATCGATTGAGTCGT+GGG + chr8.1:34780924-34780943 MS.gene008821:CDS 35.0%
! ATGTGATTCGGGTAATGTTA+AGG - chr8.1:34781999-34782018 None:intergenic 35.0%
! ATGTTAAGGTACTCAAGATC+AGG - chr8.1:34781985-34782004 None:intergenic 35.0%
! CAGAGAATTTGAGTTAAACC+AGG - chr8.1:34782439-34782458 None:intergenic 35.0%
! TTGATGACATGTACAAACAG+TGG + chr8.1:34782343-34782362 MS.gene008821:intron 35.0%
! TTTTCGATTATGACCCTGTT+TGG + chr8.1:34781145-34781164 MS.gene008821:intron 35.0%
!! AAGTGAAAAGTGTTTGAGGT+AGG - chr8.1:34781026-34781045 None:intergenic 35.0%
!! TATGCTTGTTATTACGGTTC+CGG + chr8.1:34780994-34781013 MS.gene008821:CDS 35.0%
!! TTGTTTGGCTTGACTTTGAA+GGG + chr8.1:34781411-34781430 MS.gene008821:intron 35.0%
!! TTTAAGTTGACACATTCCTG+AGG - chr8.1:34782966-34782985 None:intergenic 35.0%
!!! GTTGAGCTTGTTTTGCAAAA+AGG + chr8.1:34782845-34782864 MS.gene008821:CDS 35.0%
AAAGACACTGCAAATCAGCA+TGG + chr8.1:34781786-34781805 MS.gene008821:CDS 40.0%
AACGTGAATGCACTTCTTTG+TGG + chr8.1:34781826-34781845 MS.gene008821:CDS 40.0%
AAGACACTGCAAATCAGCAT+GGG + chr8.1:34781787-34781806 MS.gene008821:CDS 40.0%
AAGCCAAACAAGGAAACTAG+AGG - chr8.1:34781402-34781421 None:intergenic 40.0%
AAGCTTGGCCAAATGTGATT+CGG - chr8.1:34782011-34782030 None:intergenic 40.0%
ACTGTACCTGAAAGAAACCA+AGG - chr8.1:34782715-34782734 None:intergenic 40.0%
AGGCAGATCACAATAAAGGT+GGG - chr8.1:34781382-34781401 None:intergenic 40.0%
AGTTGTACATGCTGAAAGCT+TGG - chr8.1:34782026-34782045 None:intergenic 40.0%
ATCCCTTTACACAACCTTCT+TGG + chr8.1:34782102-34782121 MS.gene008821:CDS 40.0%
ATGACAGAACCAAACGATTG+GGG - chr8.1:34782084-34782103 None:intergenic 40.0%
CTAGAGGCAGATCACAATAA+AGG - chr8.1:34781386-34781405 None:intergenic 40.0%
CTTCAAAGTCAAGCCAAACA+AGG - chr8.1:34781412-34781431 None:intergenic 40.0%
GACCCCAAATTTCAACAGTA+AGG + chr8.1:34781533-34781552 MS.gene008821:intron 40.0%
GATCAGGCGCATTTATTTCA+AGG - chr8.1:34781969-34781988 None:intergenic 40.0%
GATGACAGAACCAAACGATT+GGG - chr8.1:34782085-34782104 None:intergenic 40.0%
GATTACCGCTGATAGTTCAT+TGG + chr8.1:34782889-34782908 MS.gene008821:CDS 40.0%
GCATAAGCTCAATCCAAACA+GGG - chr8.1:34781161-34781180 None:intergenic 40.0%
GTACAACTTACACAATGTCG+TGG + chr8.1:34782038-34782057 MS.gene008821:CDS 40.0%
GTTGAATCCTTCAACAACCA+TGG + chr8.1:34782152-34782171 MS.gene008821:CDS 40.0%
TAGGTCCAATGAACTATCAG+CGG - chr8.1:34782897-34782916 None:intergenic 40.0%
TAGTTTCTCTCCGCAAAGTT+TGG + chr8.1:34781876-34781895 MS.gene008821:CDS 40.0%
TCAACAAATGACACCTCATC+TGG - chr8.1:34782830-34782849 None:intergenic 40.0%
TCAAGTCCTTGGTTTCTTTC+AGG + chr8.1:34782706-34782725 MS.gene008821:intron 40.0%
TGCATAAGCTCAATCCAAAC+AGG - chr8.1:34781162-34781181 None:intergenic 40.0%
! GAACTTTATCGATTGAGTCG+TGG + chr8.1:34780923-34780942 MS.gene008821:CDS 40.0%
! TGTTTGAGGTAGGTTGAATC+CGG - chr8.1:34781016-34781035 None:intergenic 40.0%
!! AGGGTAGCCCATTCTAAAAT+TGG - chr8.1:34782740-34782759 None:intergenic 40.0%
!! CTTGTTTGGCTTGACTTTGA+AGG + chr8.1:34781410-34781429 MS.gene008821:intron 40.0%
!! GAGGAAGTGAAAAGTGTTTG+AGG - chr8.1:34781030-34781049 None:intergenic 40.0%
!! TGTTTGGCTTGACTTTGAAG+GGG + chr8.1:34781412-34781431 MS.gene008821:intron 40.0%
AACCCCAACTTCATCCTCAT+TGG - chr8.1:34781944-34781963 None:intergenic 45.0%
AAGCTCGAGTTCATCAAGGT+AGG - chr8.1:34780968-34780987 None:intergenic 45.0%
AATCCAAATGGGGCCATAGT+CGG + chr8.1:34781326-34781345 MS.gene008821:intron 45.0%
ACAATTGGGAACACTTGGCA+GGG - chr8.1:34782759-34782778 None:intergenic 45.0%
ACGAGACAATTGGGAACACT+TGG - chr8.1:34782764-34782783 None:intergenic 45.0%
AGCTCGAGTTCATCAAGGTA+GGG - chr8.1:34780967-34780986 None:intergenic 45.0%
AGCTTGGCCAAATGTGATTC+GGG - chr8.1:34782010-34782029 None:intergenic 45.0%
AGGTGCGATACGAGACAATT+GGG - chr8.1:34782773-34782792 None:intergenic 45.0%
ATCGCCAATGAGGATGAAGT+TGG + chr8.1:34781937-34781956 MS.gene008821:CDS 45.0%
ATGTACAAACAGTGGCTGCT+TGG + chr8.1:34782351-34782370 MS.gene008821:intron 45.0%
CGCCAAGAAGGTTGTGTAAA+GGG - chr8.1:34782107-34782126 None:intergenic 45.0%
GAGGCAGATCACAATAAAGG+TGG - chr8.1:34781383-34781402 None:intergenic 45.0%
GAGTAAGCTCGAGTTCATCA+AGG - chr8.1:34780972-34780991 None:intergenic 45.0%
GATGTCTTTCCCCAATCGTT+TGG + chr8.1:34782072-34782091 MS.gene008821:CDS 45.0%
GGATGACAGAACCAAACGAT+TGG - chr8.1:34782086-34782105 None:intergenic 45.0%
TCGCCAATGAGGATGAAGTT+GGG + chr8.1:34781938-34781957 MS.gene008821:CDS 45.0%
TGTATTCATCGAACCCTCCA+CGG + chr8.1:34781744-34781763 MS.gene008821:CDS 45.0%
TTCATCAAGGTAGGGTCCAA+CGG - chr8.1:34780959-34780978 None:intergenic 45.0%
! CTGCCTCTAGTTTCCTTGTT+TGG + chr8.1:34781396-34781415 MS.gene008821:intron 45.0%
! GCAAATCAGCATGGGTTATG+TGG + chr8.1:34781795-34781814 MS.gene008821:CDS 45.0%
!! CATGGGACATTTCTGAAGCA+AGG - chr8.1:34782466-34782485 None:intergenic 45.0%
!! TCTCTCTGGGACTAAACATC+TGG + chr8.1:34782128-34782147 MS.gene008821:CDS 45.0%
AAGGCTGGAAATCGCCAATG+AGG + chr8.1:34781927-34781946 MS.gene008821:CDS 50.0%
ACCAGGGAAGATTGAGCTCT+AGG - chr8.1:34782422-34782441 None:intergenic 50.0%
ATCCAAATGGGGCCATAGTC+GGG + chr8.1:34781327-34781346 MS.gene008821:intron 50.0%
ATGCATGCCTGAGTGATACG+AGG - chr8.1:34781056-34781075 None:intergenic 50.0%
CAGGTGCGATACGAGACAAT+TGG - chr8.1:34782774-34782793 None:intergenic 50.0%
CCAGCCTTCTTACGGAAGAT+GGG - chr8.1:34781915-34781934 None:intergenic 50.0%
CCTCTAACCTCGTATCACTC+AGG + chr8.1:34781046-34781065 MS.gene008821:CDS 50.0%
CCTGAGTGATACGAGGTTAG+AGG - chr8.1:34781049-34781068 None:intergenic 50.0%
CGCCAATGAGGATGAAGTTG+GGG + chr8.1:34781939-34781958 MS.gene008821:CDS 50.0%
GACAATTGGGAACACTTGGC+AGG - chr8.1:34782760-34782779 None:intergenic 50.0%
GCGCCAAGAAGGTTGTGTAA+AGG - chr8.1:34782108-34782127 None:intergenic 50.0%
GGCGATTTCCAGCCTTCTTA+CGG - chr8.1:34781923-34781942 None:intergenic 50.0%
GTGTCCCATCTTCCGTAAGA+AGG + chr8.1:34781908-34781927 MS.gene008821:CDS 50.0%
TCCAGCCTTCTTACGGAAGA+TGG - chr8.1:34781916-34781935 None:intergenic 50.0%
TGATGGCAAACTAACCACCG+TGG - chr8.1:34781764-34781783 None:intergenic 50.0%
! TTGGCTTGACTTTGAAGGGG+TGG + chr8.1:34781415-34781434 MS.gene008821:intron 50.0%
AACCCGACTATGGCCCCATT+TGG - chr8.1:34781332-34781351 None:intergenic 55.0%
AACCTTCTTGGCGCTCTCTC+TGG + chr8.1:34782114-34782133 MS.gene008821:CDS 55.0%
ACCTTCTTGGCGCTCTCTCT+GGG + chr8.1:34782115-34782134 MS.gene008821:CDS 55.0%
ATCAAGGTAGGGTCCAACGG+CGG - chr8.1:34780956-34780975 None:intergenic 55.0%
ATTCATCGAACCCTCCACGG+TGG + chr8.1:34781747-34781766 MS.gene008821:CDS 55.0%
CCCATCTTCCGTAAGAAGGC+TGG + chr8.1:34781912-34781931 MS.gene008821:CDS 55.0%
GCCTAGAGCTCAATCTTCCC+TGG + chr8.1:34782418-34782437 MS.gene008821:CDS 55.0%
GGCAAACTAACCACCGTGGA+GGG - chr8.1:34781760-34781779 None:intergenic 55.0%
TGACACATTCCTGAGGCCCT+TGG - chr8.1:34782959-34782978 None:intergenic 55.0%
TGGCAAACTAACCACCGTGG+AGG - chr8.1:34781761-34781780 None:intergenic 55.0%
TCTGATGTGCCAAGGGCCTC+AGG + chr8.1:34782947-34782966 MS.gene008821:CDS 60.0%
!! TCCCAGAGAGAGCGCCAAGA+AGG - chr8.1:34782119-34782138 None:intergenic 60.0%
TCGTGGGTTCGTGCCGCCGT+TGG + chr8.1:34780940-34780959 MS.gene008821:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 34780883 34782994 34780883 ID=MS.gene008821
chr8.1 mRNA 34780883 34782994 34780883 ID=MS.gene008821.t1;Parent=MS.gene008821
chr8.1 exon 34780883 34781082 34780883 ID=MS.gene008821.t1.exon1;Parent=MS.gene008821.t1
chr8.1 CDS 34780883 34781082 34780883 ID=cds.MS.gene008821.t1;Parent=MS.gene008821.t1
chr8.1 exon 34781726 34782173 34781726 ID=MS.gene008821.t1.exon2;Parent=MS.gene008821.t1
chr8.1 CDS 34781726 34782173 34781726 ID=cds.MS.gene008821.t1;Parent=MS.gene008821.t1
chr8.1 exon 34782363 34782515 34782363 ID=MS.gene008821.t1.exon3;Parent=MS.gene008821.t1
chr8.1 CDS 34782363 34782515 34782363 ID=cds.MS.gene008821.t1;Parent=MS.gene008821.t1
chr8.1 exon 34782728 34782994 34782728 ID=MS.gene008821.t1.exon4;Parent=MS.gene008821.t1
chr8.1 CDS 34782728 34782994 34782728 ID=cds.MS.gene008821.t1;Parent=MS.gene008821.t1
Gene Sequence

>MS.gene008821

ATGAGTCTCAACTGTCAGTCTCTTTTTTATGATAAGTGTCGAACTTTATCGATTGAGTCGTGGGTTCGTGCCGCCGTTGGACCCTACCTTGATGAACTCGAGCTTACTCTATATGCTTGTTATTACGGTTCCGGATTCAACCTACCTCAAACACTTTTCACTTCCTCTAACCTCGTATCACTCAGGCATGCATGCATAACGTTGAACTAATTGTTTTTTCGTCGACTTAATTTTCTCATATATAAATCTGGAGTGAGTGTTTTTTTCGATTATGACCCTGTTTGGATTGAGCTTATGCAGATAAACAAGCTTTTACCGTATTTTATGGAAGGAAAAAGAAAAAAACTTATGAAAATATTTTCATGAGAGCTTATGAATTAATATAAAAACTTATTTATTTGCATAAGTTATTTTCCAAATGAGGCCATATTTTTCATAAGCTCAATCCAAATGGGGCCATAGTCGGGTTACATAATAATTAGAAATTGTTGGTAATCCCACCTTTATTGTGATCTGCCTCTAGTTTCCTTGTTTGGCTTGACTTTGAAGGGGTGGATTTAGTGTCACATCAGTTAGATAGGACGCTTGATAAAAGTTTATAAAGAGGAGACACTTTTCACATTATAAGTCGGTTTTGTAAAGATGAGTTAGACCCCAAATTTCAACAGTAAGGAACAAATTTAGAGGACTAAATTCTTAAAAATAAAAGAAAATTTAGATTAGAGGACTAAATTCTTAAAAATAAAAGAAAATTTAGAGGACTGCAAGTACAAAATAAAAAATTACTATATTTGATTTTTGCTTTTTGAACTGTGATATAACATTTACTTCTTTGTTAATCAGTCTCTATGGTGAAATTGATGTATTCATCGAACCCTCCACGGTGGTTAGTTTGCCATCATTAAAGACACTGCAAATCAGCATGGGTTATGTGGAAGTGTCTAACGTGAATGCACTTCTTTGTGGCTGCCCCATCATTGAATCTCTTGATCTTAGTTTCTCTCCGCAAAGTTTGGACAAAGTTTGTGTCCCATCTTCCGTAAGAAGGCTGGAAATCGCCAATGAGGATGAAGTTGGGGTTTACCTTGAAATAAATGCGCCTGATCTTGAGTACCTTAACATTACCCGAATCACATTTGGCCAAGCTTTCAGCATGTACAACTTACACAATGTCGTGGAAGCGTATCTTGATGTCTTTCCCCAATCGTTTGGTTCTGTCATCCCTTTACACAACCTTCTTGGCGCTCTCTCTGGGACTAAACATCTGGTGTTGAATCCTTCAACAACCATGGTTAAGTTTTTTTATTTCTATTTTTTTTAAAAGTTATTTTATGTTCACATCATCATTTATACAGAGTATAAGTTGGTAAGCAACTGATAATAAACTAGTAACTAAGTATATCTCCAATAATCATGATTTACTCATATATAGATAGATATTGTTTTGTACTAATTACTACTTGATGACATGTACAAACAGTGGCTGCTTGGTGAACCCCATGATCTACTTTTTCAAGAATTTCAATATTTGCTTCGCCTAGAGCTCAATCTTCCCTGGTTTAACTCAAATTCTCTGCTCACCTTGCTTCAGAAATGTCCCATGCTTCAAGTTCTAATAATTCAGAATGACAAGGTTTGTTTAATCCAACCTGAATTTGGTCAATTTAACTTTGATGTGAAATTAACCAGTTTTTATGAATAGATTACACAAATTAGAAGTTGCATCTTATTGCACAGTATACCACTTAATATTAGCAAGATTAATTCATTACTATGAATATTGCATCTTATTCCTTTTCAAAAAAATGAATATTGCATCTTATTCAAGTCCTTGGTTTCTTTCAGGTACAGTTACCAATTTTAGAATGGGCTACCCTGCCAAGTGTTCCCAATTGTCTCGTATCGCACCTGACCTTTATTCAATTTAAAGAATTTCAAGGAATTCCAGATGAGGTGTCATTTGTTGAGCTTGTTTTGCAAAAAGGACTCGTTTTAAAGACAATGATGATTACCGCTGATAGTTCATTGGACCTAAAGAAGAAGTACGACATTCTCCAAACATTATCTGATGTGCCAAGGGCCTCAGGAATGTGTCAACTTAAATTTGAATGA
Protein sequence

>MS.gene008821.t1

MSLNCQSLFYDKCRTLSIESWVRAAVGPYLDELELTLYACYYGSGFNLPQTLFTSSNLVSLRHACITLYGEIDVFIEPSTVVSLPSLKTLQISMGYVEVSNVNALLCGCPIIESLDLSFSPQSLDKVCVPSSVRRLEIANEDEVGVYLEINAPDLEYLNITRITFGQAFSMYNLHNVVEAYLDVFPQSFGSVIPLHNLLGALSGTKHLVLNPSTTMWLLGEPHDLLFQEFQYLLRLELNLPWFNSNSLLTLLQKCPMLQVLIIQNDKVQLPILEWATLPSVPNCLVSHLTFIQFKEFQGIPDEVSFVELVLQKGLVLKTMMITADSSLDLKKKYDILQTLSDVPRASGMCQLKFE