AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021313

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021313.t1 MTR_7g056020 84.880 291 37 1 1 291 1 284 3.23e-172 492
MS.gene021313.t1 MTR_3g108560 48.299 294 132 7 8 290 14 298 2.00e-70 221
MS.gene021313.t1 MTR_3g108560 48.136 295 133 7 8 291 14 299 4.07e-70 223
MS.gene021313.t1 MTR_0492s0020 48.658 298 127 7 5 291 78 360 3.27e-67 216
MS.gene021313.t1 MTR_0543s0010 48.658 298 127 7 5 291 78 360 5.79e-67 216
MS.gene021313.t1 MTR_3g108150 44.300 307 142 8 1 290 1 295 8.82e-58 191
MS.gene021313.t1 MTR_7g088260 43.643 291 139 8 15 289 90 371 2.77e-55 186
MS.gene021313.t1 MTR_4g080610 42.705 281 126 3 18 291 14 266 3.28e-55 183
MS.gene021313.t1 MTR_3g110010 47.475 198 95 2 16 206 13 208 1.48e-44 162
MS.gene021313.t1 MTR_3g110010 55.152 165 67 3 129 289 222 383 5.82e-38 143
MS.gene021313.t1 MTR_3g109982 47.475 198 95 2 16 206 13 208 1.64e-44 161
MS.gene021313.t1 MTR_3g109982 54.491 167 69 3 129 291 222 385 4.36e-38 143
MS.gene021313.t1 MTR_3g087260 53.333 165 69 3 129 289 203 363 3.89e-41 149
MS.gene021313.t1 MTR_3g087260 46.409 181 84 3 16 194 12 181 1.97e-36 136
MS.gene021313.t1 MTR_7g098570 35.836 293 162 6 16 291 20 303 4.57e-36 135
MS.gene021313.t1 MTR_7g115270 35.783 313 161 8 8 289 7 310 1.14e-34 130
MS.gene021313.t1 MTR_7g098510 34.146 287 171 6 16 289 18 299 2.14e-34 129
MS.gene021313.t1 MTR_7g098480 36.610 295 155 8 16 291 18 299 2.31e-33 128
MS.gene021313.t1 MTR_1g041245 34.375 288 169 8 16 289 11 292 3.52e-33 126
MS.gene021313.t1 MTR_3g036250 35.374 294 159 7 13 291 2 279 8.60e-32 122
MS.gene021313.t1 MTR_7g032380 32.394 284 152 8 16 289 11 264 2.18e-30 117
MS.gene021313.t1 MTR_7g056433 33.758 314 172 9 5 293 1 303 1.81e-29 116
MS.gene021313.t1 MTR_7g034115 32.986 288 172 7 16 289 11 291 6.44e-29 114
MS.gene021313.t1 MTR_3g040700 33.333 291 163 7 16 291 43 317 1.12e-26 108
MS.gene021313.t1 MTR_7g033915 31.683 303 163 7 8 294 6 280 9.53e-26 105
MS.gene021313.t1 MTR_3g023630 30.645 310 174 10 16 300 8 301 7.41e-24 100
MS.gene021313.t1 MTR_5g073420 31.849 292 163 11 16 287 11 286 2.98e-23 99.0
MS.gene021313.t1 MTR_5g007410 32.013 303 162 10 18 289 28 317 1.42e-22 97.8
MS.gene021313.t1 MTR_7g056447 37.989 179 98 3 16 184 9 184 1.76e-22 95.1
MS.gene021313.t1 MTR_7g033990 31.313 297 177 8 16 294 11 298 2.07e-22 97.1
MS.gene021313.t1 MTR_3g107100 28.618 304 184 9 8 289 3 295 2.75e-22 96.3
MS.gene021313.t1 MTR_7g032370 31.618 272 163 8 28 289 2 260 4.05e-22 95.1
MS.gene021313.t1 MTR_5g045510 33.051 236 126 9 16 231 12 235 5.10e-22 95.1
MS.gene021313.t1 MTR_3g082890 31.410 312 169 12 13 290 14 314 5.58e-22 95.9
MS.gene021313.t1 MTR_7g056430 31.741 293 152 9 15 289 8 270 5.94e-22 96.7
MS.gene021313.t1 MTR_7g056420 31.741 293 152 9 15 289 8 270 7.70e-22 96.3
MS.gene021313.t1 MTR_7g056287 30.822 292 171 11 15 288 2 280 7.71e-22 94.7
MS.gene021313.t1 MTR_3g082890 31.429 315 170 13 13 292 94 397 1.64e-21 94.7
MS.gene021313.t1 MTR_7g026500 32.450 302 162 12 16 287 14 303 1.92e-21 94.0
MS.gene021313.t1 MTR_7g056277 30.717 293 172 11 12 286 255 534 5.10e-21 93.6
MS.gene021313.t1 MTR_6g011460 31.208 298 162 11 16 287 46 326 9.66e-21 92.0
MS.gene021313.t1 MTR_3g107160 31.746 252 152 6 7 239 1 251 1.08e-20 91.7
MS.gene021313.t1 MTR_8g085430 33.333 231 123 8 16 222 11 234 2.75e-20 89.7
MS.gene021313.t1 MTR_7g114710 28.966 290 159 8 16 289 13 271 3.31e-20 90.1
MS.gene021313.t1 MTR_7g060470 29.032 310 175 11 15 289 2 301 3.93e-20 90.1
MS.gene021313.t1 MTR_2g007500 30.502 259 155 6 16 253 14 268 4.15e-20 89.4
MS.gene021313.t1 MTR_1g085120 29.104 268 158 6 15 255 178 440 4.64e-20 90.5
MS.gene021313.t1 MTR_1g085120 29.104 268 158 6 15 255 166 428 5.41e-20 90.5
MS.gene021313.t1 MTR_1g085120 29.104 268 158 6 15 255 91 353 5.52e-20 90.1
MS.gene021313.t1 MTR_4g039440 29.085 306 165 12 16 289 34 319 9.17e-19 86.3
MS.gene021313.t1 MTR_3g105060 28.920 287 176 8 16 287 14 287 9.41e-19 85.9
MS.gene021313.t1 MTR_5g058000 31.126 302 171 11 16 299 8 290 9.89e-19 85.9
MS.gene021313.t1 MTR_5g045170 30.892 314 154 10 18 293 16 304 1.18e-18 85.9
MS.gene021313.t1 MTR_5g083890 29.371 286 162 10 12 258 2 286 1.46e-18 86.3
MS.gene021313.t1 MTR_7g034110 30.405 296 151 8 8 292 6 257 1.71e-18 85.1
MS.gene021313.t1 MTR_1089s0010 30.744 309 174 11 9 294 1 292 2.25e-18 85.1
MS.gene021313.t1 MTR_0009s0080 29.773 309 168 12 18 293 20 312 2.67e-18 85.1
MS.gene021313.t1 MTR_4g134150 33.898 236 134 7 9 236 10 231 3.45e-18 82.4
MS.gene021313.t1 MTR_7g033945 33.529 170 97 3 8 164 6 172 4.22e-18 80.9
MS.gene021313.t1 MTR_3g467400 29.368 269 162 7 16 258 3 269 5.83e-18 83.6
MS.gene021313.t1 MTR_3g099830 28.956 297 164 10 16 293 12 280 1.02e-17 83.2
MS.gene021313.t1 MTR_6g040270 29.508 305 175 11 9 289 1 289 2.67e-17 82.0
MS.gene021313.t1 MTR_5g061680 29.514 288 157 12 16 287 11 268 3.46e-17 80.9
MS.gene021313.t1 MTR_3g095600 32.751 229 123 11 16 232 4 213 7.32e-17 79.7
MS.gene021313.t1 MTR_6g045333 27.742 310 177 10 16 292 61 356 1.21e-16 80.5
MS.gene021313.t1 MTR_3g071850 28.239 301 177 8 16 287 24 314 1.53e-16 80.5
MS.gene021313.t1 MTR_7g007080 29.846 325 147 11 14 292 2 291 2.15e-16 79.3
MS.gene021313.t1 MTR_6g013160 28.532 361 168 15 10 290 3 353 7.24e-16 77.8
MS.gene021313.t1 MTR_7g055943 30.065 306 172 12 16 294 40 330 1.28e-15 77.4
MS.gene021313.t1 MTR_3g114200 39.597 149 72 6 8 143 10 153 1.45e-15 73.2
MS.gene021313.t1 MTR_7g007340 31.034 290 157 10 7 285 1 258 2.06e-15 76.3
MS.gene021313.t1 MTR_7g007370 32.812 256 117 12 12 253 13 227 2.78e-15 75.9
MS.gene021313.t1 MTR_5g008920 28.975 283 180 10 18 287 14 288 3.26e-15 75.9
MS.gene021313.t1 MTR_5g058100 28.667 300 170 12 16 287 9 292 3.29e-15 75.9
MS.gene021313.t1 MTR_6g022360 27.586 290 178 7 16 289 43 316 5.11e-15 75.5
MS.gene021313.t1 MTR_7g021990 31.922 307 159 13 16 293 48 333 5.83e-15 75.5
MS.gene021313.t1 MTR_1g108800 28.682 258 130 6 16 255 8 229 8.39e-15 74.3
MS.gene021313.t1 MTR_7g021950 31.922 307 159 13 16 293 48 333 1.40e-14 74.3
MS.gene021313.t1 MTR_3g107120 29.582 311 166 12 16 289 9 303 3.05e-14 73.2
MS.gene021313.t1 MTR_4g098590 28.839 267 159 8 18 253 1 267 3.76e-14 72.8
MS.gene021313.t1 MTR_1g108820 25.382 327 192 9 16 305 8 319 6.23e-14 72.0
MS.gene021313.t1 MTR_1g108820 25.000 308 184 8 16 291 8 300 3.79e-13 69.3
MS.gene021313.t1 MTR_6g022500 26.923 312 192 10 8 294 91 391 2.26e-12 67.8
MS.gene021313.t1 MTR_8g468910 27.841 176 113 4 11 172 43 218 3.24e-12 67.0
MS.gene021313.t1 MTR_1g095750 44.444 81 43 1 16 94 46 126 3.55e-12 63.5
MS.gene021313.t1 MTR_2g008320 26.619 278 158 8 16 258 52 318 1.62e-11 65.1
MS.gene021313.t1 MTR_5g073340 29.297 256 146 9 16 255 8 244 6.59e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021313.t1 AT4G26340 37.158 183 101 7 16 187 2 181 1.09e-15 77.4
MS.gene021313.t1 AT5G53840 34.615 182 107 4 14 187 16 193 1.25e-15 77.4
MS.gene021313.t1 AT1G16930 30.000 180 117 3 16 187 15 193 2.88e-14 73.2
MS.gene021313.t1 AT1G16930 30.000 180 117 3 16 187 15 193 2.88e-14 73.2
MS.gene021313.t1 AT1G16930 30.000 180 117 3 16 187 15 193 2.88e-14 73.2
MS.gene021313.t1 AT1G51370 29.703 202 133 3 14 210 17 214 2.31e-12 67.0
MS.gene021313.t1 AT1G51370 29.703 202 133 3 14 210 17 214 3.48e-12 67.0
MS.gene021313.t1 AT1G51370 29.703 202 133 3 14 210 17 214 3.80e-12 67.0
MS.gene021313.t1 AT5G41840 28.634 227 127 7 16 216 14 231 4.77e-12 67.0
MS.gene021313.t1 AT2G42720 33.010 206 115 9 16 201 2 204 8.89e-12 65.9
MS.gene021313.t1 AT5G56810 31.100 209 114 10 9 200 8 203 9.15e-12 65.1
MS.gene021313.t1 AT4G26350 34.392 189 100 7 16 188 2 182 1.16e-11 65.5
MS.gene021313.t1 AT5G56810 29.808 208 118 8 9 200 8 203 1.37e-11 65.1
MS.gene021313.t1 AT5G56820 34.807 181 105 6 16 188 15 190 5.07e-11 63.5
MS.gene021313.t1 AT5G41830 30.244 205 113 8 16 193 13 214 6.01e-11 63.5
MS.gene021313.t1 AT5G56380 31.551 187 113 4 16 187 2 188 6.59e-11 63.2
MS.gene021313.t1 AT5G56380 31.551 187 113 4 16 187 2 188 6.59e-11 63.2
MS.gene021313.t1 AT3G50710 32.065 184 113 4 16 187 2 185 6.80e-11 63.2
MS.gene021313.t1 AT1G55660 32.642 193 101 8 16 187 53 237 6.86e-11 62.8
MS.gene021313.t1 AT1G55660 32.642 193 101 8 16 187 53 237 7.69e-11 63.2
MS.gene021313.t1 AT3G26922 29.798 198 111 8 15 197 13 197 8.94e-11 62.0
MS.gene021313.t1 AT3G26922 29.798 198 111 8 15 197 13 197 8.94e-11 62.0

Find 76 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATTGGGGCGCCATTTA+AGG 0.150803 6.1:-47695732 None:intergenic
GGCATAAACAATTTCATTAT+TGG 0.159615 6.1:-47695746 None:intergenic
TTCTATCAGTCCACCTTAAA+TGG 0.202293 6.1:+47695719 MS.gene021313:CDS
TTGGTTAGAGCTAACATTTC+CGG 0.241620 6.1:+47696084 MS.gene021313:CDS
GCATAAACAATTTCATTATT+GGG 0.258044 6.1:-47695745 None:intergenic
AATGTTAGCTCTAACCAATT+TGG 0.273976 6.1:-47696079 None:intergenic
TCTACCTTATCGACAATTCT+TGG 0.290438 6.1:+47695660 MS.gene021313:CDS
TGATAGAAGCTTATCCAAAT+TGG 0.291994 6.1:+47696065 MS.gene021313:CDS
GTTTGACAATTTAACTCATC+TGG 0.315698 6.1:+47696435 MS.gene021313:CDS
TTTGAGGAATGCCAAAGTTT+TGG 0.329010 6.1:-47695857 None:intergenic
CTGTCGTCTTCTTCTTCATC+TGG 0.331267 6.1:-47695484 None:intergenic
AGAAAGGTTGTGACCTGGTT+TGG 0.331643 6.1:+47696040 MS.gene021313:CDS
ATGATAAGAGTTTGAAGCTT+GGG 0.355239 6.1:-47696541 None:intergenic
TTGTTATCCTCTTCAATTTG+AGG 0.369269 6.1:-47695873 None:intergenic
TTCAGCCATTTCCATTTGAA+TGG 0.377955 6.1:-47696499 None:intergenic
AGATGAGATAAAAGGCATTC+TGG 0.388182 6.1:-47696714 None:intergenic
TGTTTCCAACTCCCGTAGAT+TGG 0.390626 6.1:-47696001 None:intergenic
TATCTCACCAAACTTCTATC+TGG 0.395723 6.1:+47695973 MS.gene021313:CDS
GGCCCACTCCCAGCCGTTCA+TGG 0.396676 6.1:-47696477 None:intergenic
GGGAGAGCCAGATAGAAGTT+TGG 0.405961 6.1:-47695980 None:intergenic
CCCGCAATGGCACTACCGTT+AGG 0.410224 6.1:+47695451 None:intergenic
CCTTCTAACCACCAAAACTT+TGG 0.419966 6.1:+47695846 MS.gene021313:CDS
GTTTCCAACTCCCGTAGATT+GGG 0.430747 6.1:-47696000 None:intergenic
ATGTTGTGAGATGAGATAAA+AGG 0.431165 6.1:-47696722 None:intergenic
GAAGATCAACGTTTGAAACT+TGG 0.439390 6.1:-47695900 None:intergenic
CTACCTTATCGACAATTCTT+GGG 0.451125 6.1:+47695661 MS.gene021313:CDS
AGTGAGAGGGATGGATGGTT+GGG 0.459409 6.1:-47695792 None:intergenic
CCGCAATGGCACTACCGTTA+GGG 0.461214 6.1:+47695452 None:intergenic
ATGTGATGAAGAAGTGAGTC+CGG 0.461943 6.1:-47695520 None:intergenic
CTCTCCCAATCTACGGGAGT+TGG 0.467300 6.1:+47695996 MS.gene021313:CDS
TCAGCCATTTCCATTTGAAT+GGG 0.474488 6.1:-47696498 None:intergenic
AACATGAGATGTAGTGGATA+GGG 0.477530 6.1:-47696415 None:intergenic
AAGGATTTAATCGTAAAGAA+AGG 0.480318 6.1:+47696024 MS.gene021313:CDS
TGACCATGAACGGCTGGGAG+TGG 0.480941 6.1:+47696474 MS.gene021313:CDS
TTTAAGGTGGACTGATAGAA+AGG 0.483228 6.1:-47695716 None:intergenic
TATCTGGCTCTCCCAATCTA+CGG 0.483679 6.1:+47695989 MS.gene021313:CDS
GAGTGAGAGGGATGGATGGT+TGG 0.486728 6.1:-47695793 None:intergenic
CTTATCTCGAGTGGCGATGA+AGG 0.488041 6.1:-47695686 None:intergenic
TGGGCCCATTCAAATGGAAA+TGG 0.489685 6.1:+47696494 MS.gene021313:CDS
AGACATTGACCATGAACGGC+TGG 0.494764 6.1:+47696468 MS.gene021313:CDS
GACCATGAACGGCTGGGAGT+GGG 0.515661 6.1:+47696475 MS.gene021313:CDS
ATCTGGCTCTCCCAATCTAC+GGG 0.518456 6.1:+47695990 MS.gene021313:CDS
CATAAACAATTTCATTATTG+GGG 0.521312 6.1:-47695744 None:intergenic
TGGGAGTGGGCCCATTCAAA+TGG 0.523309 6.1:+47696488 MS.gene021313:CDS
AAACATGAGATGTAGTGGAT+AGG 0.534808 6.1:-47696416 None:intergenic
GAGCCCAAGAATTGTCGATA+AGG 0.536813 6.1:-47695664 None:intergenic
TGTGATGAAGAAGTGAGTCC+GGG 0.543958 6.1:-47695519 None:intergenic
CTCGCTCAAAGTACTTCACA+TGG 0.549068 6.1:+47695924 MS.gene021313:CDS
TTGTCAAACATGAGATGTAG+TGG 0.552805 6.1:-47696421 None:intergenic
AATGATAAGAGTTTGAAGCT+TGG 0.554312 6.1:-47696542 None:intergenic
TCAAACTCTTATCATTGATG+AGG 0.554678 6.1:+47696549 MS.gene021313:CDS
CGTAAAGAAAGGTTGTGACC+TGG 0.561456 6.1:+47696035 MS.gene021313:CDS
TGATAAGAGTTTGAAGCTTG+GGG 0.561683 6.1:-47696540 None:intergenic
TTGATATACATACCACATGT+AGG 0.563352 6.1:-47696152 None:intergenic
TATTGGGGCGCCATTTAAGG+TGG 0.567435 6.1:-47695729 None:intergenic
CGACAGAATAAGCGATCTCC+CGG 0.567783 6.1:+47695501 MS.gene021313:CDS
CATTAGACATTGACCATGAA+CGG 0.571025 6.1:+47696464 MS.gene021313:CDS
TGGCATTCCTCAAATTGAAG+AGG 0.576392 6.1:+47695866 MS.gene021313:CDS
TTTCTTTCTATCAAAGACAC+AGG 0.582935 6.1:+47695550 MS.gene021313:CDS
ATCAGAGTGAGAGGGATGGA+TGG 0.583194 6.1:-47695797 None:intergenic
TTAAGGTGGACTGATAGAAA+GGG 0.583435 6.1:-47695715 None:intergenic
ATGTGAAGTACTTTGAGCGA+GGG 0.583803 6.1:-47695922 None:intergenic
AGCTTCTATCATTCCAAACC+AGG 0.587339 6.1:-47696053 None:intergenic
TATGTAGCAATCAGAGTGAG+AGG 0.591435 6.1:-47695806 None:intergenic
CTTAAACAAAATATGCCGAC+CGG 0.591531 6.1:-47696103 None:intergenic
TCTGGAATTGAAAGCCCTAA+CGG 0.611533 6.1:-47695466 None:intergenic
GACATTGACCATGAACGGCT+GGG 0.612407 6.1:+47696469 MS.gene021313:CDS
ATAAAGTCGTCGTTGAATAG+CGG 0.615262 6.1:-47695767 None:intergenic
TCTACGGGAGTTGGAAACAA+AGG 0.618747 6.1:+47696005 MS.gene021313:CDS
GGAGCATCTGCGCCTACATG+TGG 0.622134 6.1:+47696140 MS.gene021313:CDS
CATGTGAAGTACTTTGAGCG+AGG 0.624165 6.1:-47695923 None:intergenic
GGGTAGATTCTTATCTCGAG+TGG 0.627196 6.1:-47695695 None:intergenic
GTTTAAGCAACTTTATAACG+TGG 0.642021 6.1:+47696119 MS.gene021313:CDS
ATGTAGCAATCAGAGTGAGA+GGG 0.662701 6.1:-47695805 None:intergenic
AGCAATCAGAGTGAGAGGGA+TGG 0.678515 6.1:-47695801 None:intergenic
TTAGAGCTAACATTTCCGGT+CGG 0.704519 6.1:+47696088 MS.gene021313:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAAAATACATAGAAG+TGG - chr6.1:47696605-47696624 None:intergenic 15.0%
!! CATAAACAATTTCATTATTG+GGG - chr6.1:47695747-47695766 None:intergenic 20.0%
!! GCATAAACAATTTCATTATT+GGG - chr6.1:47695748-47695767 None:intergenic 20.0%
! AAAAATACATAGAAGTGGAA+TGG - chr6.1:47696600-47696619 None:intergenic 25.0%
! AAGGATTTAATCGTAAAGAA+AGG + chr6.1:47696024-47696043 MS.gene021313:CDS 25.0%
! AGTCACATTGTTCAATTTAA+GGG + chr6.1:47696296-47696315 MS.gene021313:intron 25.0%
! GGCATAAACAATTTCATTAT+TGG - chr6.1:47695749-47695768 None:intergenic 25.0%
! TAATCAATTTACTCATTCCA+TGG + chr6.1:47696211-47696230 MS.gene021313:intron 25.0%
! TTTATTACAAGTATACTCCA+TGG - chr6.1:47696231-47696250 None:intergenic 25.0%
!! GACTCAATTCATAATTTTTC+TGG - chr6.1:47696280-47696299 None:intergenic 25.0%
ATGTTGTGAGATGAGATAAA+AGG - chr6.1:47696725-47696744 None:intergenic 30.0%
GAGTCACATTGTTCAATTTA+AGG + chr6.1:47696295-47696314 MS.gene021313:intron 30.0%
GTTTAAGCAACTTTATAACG+TGG + chr6.1:47696119-47696138 MS.gene021313:CDS 30.0%
GTTTGACAATTTAACTCATC+TGG + chr6.1:47696435-47696454 MS.gene021313:CDS 30.0%
TCAAACTCTTATCATTGATG+AGG + chr6.1:47696549-47696568 MS.gene021313:CDS 30.0%
TGATAGAAGCTTATCCAAAT+TGG + chr6.1:47696065-47696084 MS.gene021313:CDS 30.0%
TTGATATACATACCACATGT+AGG - chr6.1:47696155-47696174 None:intergenic 30.0%
TTGTTATCCTCTTCAATTTG+AGG - chr6.1:47695876-47695895 None:intergenic 30.0%
TTTCTTTCTATCAAAGACAC+AGG + chr6.1:47695550-47695569 MS.gene021313:CDS 30.0%
! AATGATAAGAGTTTGAAGCT+TGG - chr6.1:47696545-47696564 None:intergenic 30.0%
! ATGATAAGAGTTTGAAGCTT+GGG - chr6.1:47696544-47696563 None:intergenic 30.0%
!! AATGTTAGCTCTAACCAATT+TGG - chr6.1:47696082-47696101 None:intergenic 30.0%
!! ACAGTAAACAATTTTGACGA+TGG + chr6.1:47696666-47696685 MS.gene021313:intron 30.0%
ATAAAGTCGTCGTTGAATAG+CGG - chr6.1:47695770-47695789 None:intergenic 35.0%
CATTAGACATTGACCATGAA+CGG + chr6.1:47696464-47696483 MS.gene021313:CDS 35.0%
CTACCTTATCGACAATTCTT+GGG + chr6.1:47695661-47695680 MS.gene021313:CDS 35.0%
CTTAAACAAAATATGCCGAC+CGG - chr6.1:47696106-47696125 None:intergenic 35.0%
TATCTCACCAAACTTCTATC+TGG + chr6.1:47695973-47695992 MS.gene021313:CDS 35.0%
TCAGCCATTTCCATTTGAAT+GGG - chr6.1:47696501-47696520 None:intergenic 35.0%
TCTACCTTATCGACAATTCT+TGG + chr6.1:47695660-47695679 MS.gene021313:CDS 35.0%
TTCAACTGTGTATCATTGTC+AGG + chr6.1:47696638-47696657 MS.gene021313:intron 35.0%
TTCAGCCATTTCCATTTGAA+TGG - chr6.1:47696502-47696521 None:intergenic 35.0%
TTCTATCAGTCCACCTTAAA+TGG + chr6.1:47695719-47695738 MS.gene021313:CDS 35.0%
TTGGTTAGAGCTAACATTTC+CGG + chr6.1:47696084-47696103 MS.gene021313:CDS 35.0%
TTGTCAAACATGAGATGTAG+TGG - chr6.1:47696424-47696443 None:intergenic 35.0%
! GAAGATCAACGTTTGAAACT+TGG - chr6.1:47695903-47695922 None:intergenic 35.0%
! TGATAAGAGTTTGAAGCTTG+GGG - chr6.1:47696543-47696562 None:intergenic 35.0%
! TTTGAGGAATGCCAAAGTTT+TGG - chr6.1:47695860-47695879 None:intergenic 35.0%
!! AAACATGAGATGTAGTGGAT+AGG - chr6.1:47696419-47696438 None:intergenic 35.0%
!! AACATGAGATGTAGTGGATA+GGG - chr6.1:47696418-47696437 None:intergenic 35.0%
!! AGATGAGATAAAAGGCATTC+TGG - chr6.1:47696717-47696736 None:intergenic 35.0%
!! GAATCTATCACTTTTGCAGA+TGG + chr6.1:47695946-47695965 MS.gene021313:CDS 35.0%
!! TCTGTTTCCATCTTTTTGAG+AGG - chr6.1:47695588-47695607 None:intergenic 35.0%
!! TTAAGGTGGACTGATAGAAA+GGG - chr6.1:47695718-47695737 None:intergenic 35.0%
!! TTTAAGGTGGACTGATAGAA+AGG - chr6.1:47695719-47695738 None:intergenic 35.0%
!!! GCTATTTCTCTCGATTTTCA+AGG + chr6.1:47696327-47696346 MS.gene021313:intron 35.0%
AGCTTCTATCATTCCAAACC+AGG - chr6.1:47696056-47696075 None:intergenic 40.0%
ATGTAGCAATCAGAGTGAGA+GGG - chr6.1:47695808-47695827 None:intergenic 40.0%
ATGTGATGAAGAAGTGAGTC+CGG - chr6.1:47695523-47695542 None:intergenic 40.0%
CCTTCTAACCACCAAAACTT+TGG + chr6.1:47695846-47695865 MS.gene021313:CDS 40.0%
TATGTAGCAATCAGAGTGAG+AGG - chr6.1:47695809-47695828 None:intergenic 40.0%
TGGCATTCCTCAAATTGAAG+AGG + chr6.1:47695866-47695885 MS.gene021313:CDS 40.0%
TTAGAGCTAACATTTCCGGT+CGG + chr6.1:47696088-47696107 MS.gene021313:CDS 40.0%
! ATGTGAAGTACTTTGAGCGA+GGG - chr6.1:47695925-47695944 None:intergenic 40.0%
! TCTGGAATTGAAAGCCCTAA+CGG - chr6.1:47695469-47695488 None:intergenic 40.0%
!! ACAATTTTGACGATGGCAGT+TGG + chr6.1:47696673-47696692 MS.gene021313:intron 40.0%
!! CCAAAGTTTTGGTGGTTAGA+AGG - chr6.1:47695849-47695868 None:intergenic 40.0%
!! GTTTCCATCTTTTTGAGAGG+AGG - chr6.1:47695585-47695604 None:intergenic 40.0%
AGAAAGGTTGTGACCTGGTT+TGG + chr6.1:47696040-47696059 MS.gene021313:CDS 45.0%
CAAGCCTCCTCTCAAAAAGA+TGG + chr6.1:47695578-47695597 MS.gene021313:CDS 45.0%
CGTAAAGAAAGGTTGTGACC+TGG + chr6.1:47696035-47696054 MS.gene021313:CDS 45.0%
CTGTCGTCTTCTTCTTCATC+TGG - chr6.1:47695487-47695506 None:intergenic 45.0%
GAGCCCAAGAATTGTCGATA+AGG - chr6.1:47695667-47695686 None:intergenic 45.0%
GGGTAGATTCTTATCTCGAG+TGG - chr6.1:47695698-47695717 None:intergenic 45.0%
GTTTCCAACTCCCGTAGATT+GGG - chr6.1:47696003-47696022 None:intergenic 45.0%
TCTACGGGAGTTGGAAACAA+AGG + chr6.1:47696005-47696024 MS.gene021313:CDS 45.0%
TGGGCCCATTCAAATGGAAA+TGG + chr6.1:47696494-47696513 MS.gene021313:CDS 45.0%
TGTGATGAAGAAGTGAGTCC+GGG - chr6.1:47695522-47695541 None:intergenic 45.0%
TGTTTCCAACTCCCGTAGAT+TGG - chr6.1:47696004-47696023 None:intergenic 45.0%
! CATGTGAAGTACTTTGAGCG+AGG - chr6.1:47695926-47695945 None:intergenic 45.0%
! CATTATTGGGGCGCCATTTA+AGG - chr6.1:47695735-47695754 None:intergenic 45.0%
! CTCGCTCAAAGTACTTCACA+TGG + chr6.1:47695924-47695943 MS.gene021313:CDS 45.0%
! TTTTGACGATGGCAGTTGGA+AGG + chr6.1:47696677-47696696 MS.gene021313:intron 45.0%
!! GAGGAATGCCAAAGTTTTGG+TGG - chr6.1:47695857-47695876 None:intergenic 45.0%
!! TATCTGGCTCTCCCAATCTA+CGG + chr6.1:47695989-47696008 MS.gene021313:CDS 45.0%
AGACATTGACCATGAACGGC+TGG + chr6.1:47696468-47696487 MS.gene021313:CDS 50.0%
AGCAATCAGAGTGAGAGGGA+TGG - chr6.1:47695804-47695823 None:intergenic 50.0%
AGTGAGAGGGATGGATGGTT+GGG - chr6.1:47695795-47695814 None:intergenic 50.0%
ATCAGAGTGAGAGGGATGGA+TGG - chr6.1:47695800-47695819 None:intergenic 50.0%
CGACAGAATAAGCGATCTCC+CGG + chr6.1:47695501-47695520 MS.gene021313:CDS 50.0%
CTTATCTCGAGTGGCGATGA+AGG - chr6.1:47695689-47695708 None:intergenic 50.0%
GACATTGACCATGAACGGCT+GGG + chr6.1:47696469-47696488 MS.gene021313:CDS 50.0%
GGGAGAGCCAGATAGAAGTT+TGG - chr6.1:47695983-47696002 None:intergenic 50.0%
! TATTGGGGCGCCATTTAAGG+TGG - chr6.1:47695732-47695751 None:intergenic 50.0%
!! ATCTGGCTCTCCCAATCTAC+GGG + chr6.1:47695990-47696009 MS.gene021313:CDS 50.0%
CTCTCCCAATCTACGGGAGT+TGG + chr6.1:47695996-47696015 MS.gene021313:CDS 55.0%
GAGTGAGAGGGATGGATGGT+TGG - chr6.1:47695796-47695815 None:intergenic 55.0%
TGGGAGTGGGCCCATTCAAA+TGG + chr6.1:47696488-47696507 MS.gene021313:CDS 55.0%
GACCATGAACGGCTGGGAGT+GGG + chr6.1:47696475-47696494 MS.gene021313:CDS 60.0%
TGACCATGAACGGCTGGGAG+TGG + chr6.1:47696474-47696493 MS.gene021313:CDS 60.0%
! GGAGCATCTGCGCCTACATG+TGG + chr6.1:47696140-47696159 MS.gene021313:CDS 60.0%
GGCCCACTCCCAGCCGTTCA+TGG - chr6.1:47696480-47696499 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 47695457 47696754 47695457 ID=MS.gene021313
chr6.1 mRNA 47695457 47696754 47695457 ID=MS.gene021313.t1;Parent=MS.gene021313
chr6.1 exon 47695457 47696161 47695457 ID=MS.gene021313.t1.exon1;Parent=MS.gene021313.t1
chr6.1 CDS 47695457 47696161 47695457 ID=cds.MS.gene021313.t1;Parent=MS.gene021313.t1
chr6.1 exon 47696409 47696570 47696409 ID=MS.gene021313.t1.exon2;Parent=MS.gene021313.t1
chr6.1 CDS 47696409 47696570 47696409 ID=cds.MS.gene021313.t1;Parent=MS.gene021313.t1
chr6.1 exon 47696692 47696754 47696692 ID=MS.gene021313.t1.exon3;Parent=MS.gene021313.t1
chr6.1 CDS 47696692 47696754 47696692 ID=cds.MS.gene021313.t1;Parent=MS.gene021313.t1
Gene Sequence

>MS.gene021313

ATGGCACTACCGTTAGGGCTTTCAATTCCAGATGAAGAAGAAGACGACAGAATAAGCGATCTCCCGGACTCACTTCTTCATCACATTATTTCTTTTCTTTCTATCAAAGACACAGGCATCACAAGCCTCCTCTCAAAAAGATGGAAACAGATTTCGCTGTTACAACTCATCGTCTACTTCGATGAAAAACACTGTCGAGAAGCTCTACCTTATCGACAATTCTTGGGCTCCTTCATCGCCACTCGAGATAAGAATCTACCCTTTCTATCAGTCCACCTTAAATGGCGCCCCAATAATGAAATTGTTTATGCCGCTATTCAACGACGACTTTATAACCCAACCATCCATCCCTCTCACTCTGATTGCTACATAATCAAATCGTCTTCTTTCCTTCTAACCACCAAAACTTTGGCATTCCTCAAATTGAAGAGGATAACAATCAACCAAGTTTCAAACGTTGATCTTCCCTCGCTCAAAGTACTTCACATGGAATCTATCACTTTTGCAGATGGTGAATATCTCACCAAACTTCTATCTGGCTCTCCCAATCTACGGGAGTTGGAAACAAAGGATTTAATCGTAAAGAAAGGTTGTGACCTGGTTTGGAATGATAGAAGCTTATCCAAATTGGTTAGAGCTAACATTTCCGGTCGGCATATTTTGTTTAAGCAACTTTATAACGTGGAGCATCTGCGCCTACATGTGGTATGTATATCAATATATTTATCTGCATTAATCTCTTATTAAATTAAGATAATCAATTTACTCATTCCATGGAGTATACTTGTAATAAACATTTATCAAAATCAATGTATATTGACCAGAAAAATTATGAATTGAGTCACATTGTTCAATTTAAGGGAGTAAATTGCTATTTCTCTCGATTTTCAAGGATGAAAATTTTGATTTACTCAACTCATTAATATTATTTATATCTTTGCAACTAATGCAGACATGTCCCTATCCACTACATCTCATGTTTGACAATTTAACTCATCTGGAGCTAACATTAGACATTGACCATGAACGGCTGGGAGTGGGCCCATTCAAATGGAAATGGCTGAATATTCTGCTTTCATATTTCCCCAAGCTTCAAACTCTTATCATTGATGAGGTTTTTAATGTCATGTCTTTTCTTTTCCATTCCACTTCTATGTATTTTTTTATATATTTCAAAACATTTCAACTGTGTATCATTGTCAGGTTGATACAGTAAACAATTTTGACGATGGCAGTTGGAAGGAAACAGTTGTTGTACCAGAATGCCTTTTATCTCATCTCACAACATGCTCACTTAG
Protein sequence

>MS.gene021313.t1

MALPLGLSIPDEEEDDRISDLPDSLLHHIISFLSIKDTGITSLLSKRWKQISLLQLIVYFDEKHCREALPYRQFLGSFIATRDKNLPFLSVHLKWRPNNEIVYAAIQRRLYNPTIHPSHSDCYIIKSSSFLLTTKTLAFLKLKRITINQVSNVDLPSLKVLHMESITFADGEYLTKLLSGSPNLRELETKDLIVKKGCDLVWNDRSLSKLVRANISGRHILFKQLYNVEHLRLHVTCPYPLHLMFDNLTHLELTLDIDHERLGVGPFKWKWLNILLSYFPKLQTLIIDELEGNSCCTRMPFISSHNMLT