AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09362


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09362.t1 MTR_4g055990 95.609 501 21 1 67 566 1 501 0.0 961
MS.gene09362.t1 MTR_4g055990 95.407 479 21 1 67 544 1 479 0.0 918
MS.gene09362.t1 MTR_4g055580 82.249 507 85 1 56 562 81 582 0.0 821
MS.gene09362.t1 MTR_4g056020 80.639 501 54 4 67 566 1 459 0.0 789
MS.gene09362.t1 MTR_4g056040 79.749 479 84 5 67 544 1 467 0.0 756
MS.gene09362.t1 MTR_4g056030 75.813 492 76 4 67 557 1 450 0.0 728
MS.gene09362.t1 MTR_4g056070 81.900 442 71 3 67 504 1 437 0.0 723
MS.gene09362.t1 MTR_1g038710 62.551 494 134 6 63 549 7 456 0.0 555
MS.gene09362.t1 MTR_1g090883 57.761 393 124 6 68 457 12 365 7.62e-138 405
MS.gene09362.t1 MTR_7g110920 56.145 358 104 5 202 544 1 320 2.02e-120 358
MS.gene09362.t1 MTR_4g056020 82.738 168 24 1 399 566 1 163 9.32e-92 279
MS.gene09362.t1 MTR_4g093690 48.553 311 113 7 65 370 8 276 3.08e-74 238
MS.gene09362.t1 MTR_4g056010 91.000 100 9 0 171 270 1 100 1.77e-57 187
MS.gene09362.t1 MTR_1g090900 53.271 214 60 4 67 277 1 177 5.77e-55 184
MS.gene09362.t1 MTR_1g090890 62.637 91 28 2 457 544 29 116 2.62e-29 112
MS.gene09362.t1 MTR_5g084070 29.065 492 262 17 71 546 9 429 9.82e-27 113
MS.gene09362.t1 MTR_7g056433 27.412 456 218 17 70 518 7 356 2.09e-24 105
MS.gene09362.t1 MTR_7g115270 25.630 476 240 14 75 536 12 387 2.85e-24 105
MS.gene09362.t1 MTR_5g080710 28.970 466 241 17 75 523 33 425 5.77e-24 105
MS.gene09362.t1 MTR_8g062270 26.724 464 265 17 75 518 16 424 6.64e-24 105
MS.gene09362.t1 MTR_8g014260 26.223 511 258 15 72 541 13 445 3.99e-23 102
MS.gene09362.t1 MTR_8g467800 28.908 467 254 18 71 518 16 423 3.63e-22 100
MS.gene09362.t1 MTR_2g007400 26.087 483 242 22 75 540 12 396 4.80e-22 99.0
MS.gene09362.t1 MTR_8g445780 26.711 453 232 15 75 503 13 389 1.08e-20 94.7
MS.gene09362.t1 MTR_8g058970 26.176 489 286 18 70 530 14 455 1.55e-20 95.1
MS.gene09362.t1 MTR_3g108560 27.253 455 208 19 72 518 17 356 1.49e-19 91.3
MS.gene09362.t1 MTR_8g468840 26.134 463 267 18 75 518 14 420 2.42e-18 88.2
MS.gene09362.t1 MTR_8g468810 26.824 466 267 18 70 518 20 428 7.64e-18 86.7
MS.gene09362.t1 MTR_8g014160 29.683 347 178 12 70 396 36 336 2.04e-17 85.1
MS.gene09362.t1 MTR_5g058100 25.708 459 225 18 67 518 1 350 4.28e-16 80.9
MS.gene09362.t1 MTR_8g467800 30.117 342 173 12 71 396 16 307 5.56e-16 80.1
MS.gene09362.t1 MTR_8g058965 26.804 485 242 21 75 519 13 424 9.84e-16 80.1
MS.gene09362.t1 MTR_4g080773 26.230 488 277 19 60 518 1 434 1.25e-15 80.1
MS.gene09362.t1 MTR_4g080773 26.380 489 275 20 60 518 1 434 1.81e-15 79.7
MS.gene09362.t1 MTR_6g011460 27.252 433 250 17 75 494 46 426 2.88e-15 78.6
MS.gene09362.t1 MTR_8g468810 28.274 336 182 14 70 392 20 309 6.20e-14 73.6
MS.gene09362.t1 MTR_8g468810 28.274 336 182 14 70 392 20 309 6.63e-14 73.6
MS.gene09362.t1 MTR_3g109982 25.455 495 263 17 70 518 8 442 7.04e-14 75.1
MS.gene09362.t1 MTR_1g085120 26.281 449 224 23 75 518 92 438 7.54e-14 74.3
MS.gene09362.t1 MTR_1g085120 26.281 449 224 23 75 518 167 513 9.49e-14 74.3
MS.gene09362.t1 MTR_8g062310 30.488 246 117 10 75 316 25 220 1.01e-13 73.9
MS.gene09362.t1 MTR_8g468810 28.274 336 182 14 70 392 20 309 1.05e-13 73.2
MS.gene09362.t1 MTR_8g468810 28.274 336 182 14 70 392 20 309 2.68e-13 72.0
MS.gene09362.t1 MTR_4g039440 25.263 475 236 22 75 541 34 397 5.38e-13 71.6
MS.gene09362.t1 MTR_1g085120 32.287 223 109 12 75 296 179 360 9.25e-13 70.9
MS.gene09362.t1 MTR_6g022390 32.911 158 81 6 75 232 5 137 1.55e-12 65.9
MS.gene09362.t1 MTR_3g048290 25.780 481 257 20 71 518 19 432 2.70e-12 69.7
MS.gene09362.t1 MTR_4g080787 24.706 510 282 22 60 534 1 443 2.99e-12 69.3
MS.gene09362.t1 MTR_5g008950 32.432 111 65 2 413 520 233 336 9.67e-12 67.4
MS.gene09362.t1 MTR_3g023630 22.545 448 233 14 75 518 8 345 1.18e-11 67.0
MS.gene09362.t1 MTR_5g045170 30.222 225 107 10 77 296 16 195 2.06e-11 66.2
MS.gene09362.t1 MTR_6g044560 29.020 255 142 11 55 298 162 388 4.21e-11 65.9
MS.gene09362.t1 MTR_3g108560 32.159 227 101 11 72 296 17 192 9.18e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09362.t1 AT5G38396 28.392 479 252 18 75 519 2 423 2.44e-26 112
MS.gene09362.t1 AT4G00315 27.975 479 262 21 75 529 2 421 6.61e-26 111
MS.gene09362.t1 AT5G62970 31.957 460 257 25 75 522 2 417 8.18e-26 110
MS.gene09362.t1 AT2G26860 29.194 459 254 16 75 522 2 400 1.83e-25 109
MS.gene09362.t1 AT2G26860 29.194 459 254 16 75 522 2 400 1.83e-25 109
MS.gene09362.t1 AT4G14103 28.706 425 214 17 75 466 8 376 2.91e-25 109
MS.gene09362.t1 AT3G59160 27.603 413 224 14 75 447 13 390 1.94e-24 107
MS.gene09362.t1 AT4G14103 28.500 400 203 15 75 446 8 352 4.85e-24 104
MS.gene09362.t1 AT4G14103 28.500 400 203 15 75 446 8 352 4.85e-24 104
MS.gene09362.t1 AT4G00320 28.186 408 221 14 69 447 7 371 8.79e-24 105
MS.gene09362.t1 AT4G10400 26.608 451 250 15 75 518 2 378 9.86e-24 104
MS.gene09362.t1 AT4G10400 26.608 451 250 15 75 518 2 378 9.86e-24 104
MS.gene09362.t1 AT4G10400 26.608 451 250 15 75 518 2 378 9.86e-24 104
MS.gene09362.t1 AT3G50710 27.564 468 248 17 75 523 2 397 1.10e-23 104
MS.gene09362.t1 AT3G59190 27.901 405 218 11 75 450 12 371 1.92e-23 103
MS.gene09362.t1 AT4G26340 28.571 455 243 22 75 517 2 386 2.06e-23 103
MS.gene09362.t1 AT5G56380 27.948 458 238 16 75 506 2 393 3.16e-23 103
MS.gene09362.t1 AT5G56380 27.948 458 238 16 75 506 2 393 3.16e-23 103
MS.gene09362.t1 AT3G59190 28.049 410 220 12 75 455 12 375 3.96e-23 103
MS.gene09362.t1 AT1G55660 26.981 467 260 21 75 519 53 460 1.44e-22 101
MS.gene09362.t1 AT5G41830 28.605 430 228 14 69 468 7 387 2.91e-22 100
MS.gene09362.t1 AT4G14096 26.841 421 223 15 74 466 7 370 3.81e-22 100
MS.gene09362.t1 AT4G14096 26.841 421 223 15 74 466 7 370 3.81e-22 100
MS.gene09362.t1 AT3G59230 26.441 503 275 14 75 538 12 458 5.31e-22 99.8
MS.gene09362.t1 AT5G41840 28.186 408 220 11 75 447 14 383 5.78e-22 100
MS.gene09362.t1 AT1G51370 27.564 468 255 19 73 527 17 413 1.11e-21 98.2
MS.gene09362.t1 AT1G58310 28.822 399 227 13 75 447 8 375 1.31e-21 99.0
MS.gene09362.t1 AT4G13965 28.112 466 247 24 75 526 10 401 4.15e-21 96.7
MS.gene09362.t1 AT5G60610 28.261 460 239 21 75 518 2 386 5.04e-21 95.9
MS.gene09362.t1 AT5G60610 28.261 460 239 21 75 518 2 386 5.04e-21 95.9
MS.gene09362.t1 AT5G38590 25.821 457 255 14 75 520 2 385 5.47e-21 95.9
MS.gene09362.t1 AT3G59170 27.451 408 234 14 75 447 7 387 1.04e-20 95.9
MS.gene09362.t1 AT3G03030 27.536 414 226 12 75 455 2 374 1.50e-20 95.1
MS.gene09362.t1 AT4G13960 26.582 474 260 14 75 519 2 416 1.95e-20 94.7
MS.gene09362.t1 AT4G13960 26.582 474 260 14 75 519 2 416 1.95e-20 94.7
MS.gene09362.t1 AT4G26350 24.353 464 263 15 75 519 2 396 2.88e-20 94.0
MS.gene09362.t1 AT3G59200 26.699 412 215 13 74 450 6 365 1.95e-19 90.9
MS.gene09362.t1 AT2G26030 26.609 466 260 19 75 516 4 411 2.73e-19 91.3
MS.gene09362.t1 AT3G59210 27.861 402 218 13 71 447 3 357 5.44e-19 90.5
MS.gene09362.t1 AT3G59210 27.861 402 218 13 71 447 3 357 5.44e-19 90.5
MS.gene09362.t1 AT3G59210 27.861 402 218 13 71 447 3 357 5.44e-19 90.5
MS.gene09362.t1 AT3G59210 27.861 402 218 13 71 447 3 357 5.44e-19 90.5
MS.gene09362.t1 AT3G59210 27.861 402 218 13 71 447 3 357 5.44e-19 90.5
MS.gene09362.t1 AT4G22280 28.750 400 192 15 75 450 2 332 7.65e-19 88.6
MS.gene09362.t1 AT4G22280 28.928 401 206 15 75 458 2 340 8.14e-19 89.4
MS.gene09362.t1 AT1G52650 26.875 480 250 17 75 518 2 416 1.19e-18 89.4
MS.gene09362.t1 AT3G58880 25.959 443 252 14 75 492 3 394 1.36e-18 89.0
MS.gene09362.t1 AT3G59200 25.893 448 238 14 74 486 6 394 2.95e-18 88.6
MS.gene09362.t1 AT3G58920 27.833 406 219 14 75 448 2 365 3.81e-18 87.8
MS.gene09362.t1 AT3G62430 28.750 400 199 18 75 448 2 341 4.56e-18 87.4
MS.gene09362.t1 AT1G32375 27.101 476 249 19 75 530 2 399 4.76e-18 87.0
MS.gene09362.t1 AT1G32375 27.101 476 249 19 75 530 2 399 4.76e-18 87.0
MS.gene09362.t1 AT3G58960 26.914 405 212 13 75 449 2 352 5.43e-18 87.4
MS.gene09362.t1 AT5G56370 26.947 475 268 18 75 542 2 404 9.49e-18 86.3
MS.gene09362.t1 AT5G56370 26.947 475 268 18 75 542 2 404 9.49e-18 86.3
MS.gene09362.t1 AT3G52680 26.360 478 231 18 75 520 21 409 9.56e-18 86.7
MS.gene09362.t1 AT3G03040 27.407 405 210 12 75 446 2 355 1.25e-17 86.3
MS.gene09362.t1 AT2G26030 26.180 466 257 19 75 516 4 406 1.47e-17 85.9
MS.gene09362.t1 AT2G26030 26.180 466 257 19 75 516 4 406 1.47e-17 85.9
MS.gene09362.t1 AT4G10420 27.557 352 205 11 202 540 1 315 1.51e-17 84.3
MS.gene09362.t1 AT3G58900 29.484 407 204 15 75 448 2 358 2.26e-17 85.5
MS.gene09362.t1 AT3G03030 28.125 352 188 10 75 398 2 316 3.31e-17 83.6
MS.gene09362.t1 AT3G58860 26.269 453 255 15 72 502 4 399 4.25e-17 84.3
MS.gene09362.t1 AT1G06630 28.535 389 216 15 74 448 11 351 4.61e-17 84.0
MS.gene09362.t1 AT1G06630 28.535 389 216 15 74 448 11 351 4.61e-17 84.0
MS.gene09362.t1 AT1G06630 28.535 389 216 15 74 448 11 351 4.61e-17 84.0
MS.gene09362.t1 AT1G06630 28.535 389 216 15 74 448 11 351 4.61e-17 84.0
MS.gene09362.t1 AT1G51370 27.842 431 228 18 73 491 17 376 5.23e-17 84.0
MS.gene09362.t1 AT1G06630 28.535 389 216 15 74 448 11 351 5.49e-17 84.3
MS.gene09362.t1 AT5G56700 29.692 357 204 15 178 520 29 352 5.58e-17 83.2
MS.gene09362.t1 AT3G59180 28.042 378 212 17 167 501 33 393 5.64e-17 84.3
MS.gene09362.t1 AT1G06630 28.535 389 216 15 74 448 20 360 5.74e-17 84.0
MS.gene09362.t1 AT1G55660 27.976 336 178 14 75 392 53 342 6.35e-17 83.2
MS.gene09362.t1 AT5G56400 25.690 471 240 21 75 518 33 420 9.68e-17 83.6
MS.gene09362.t1 AT1G55030 25.910 467 259 21 75 528 19 411 2.27e-16 82.0
MS.gene09362.t1 AT1G78760 26.598 485 246 22 73 526 14 419 2.81e-16 82.0
MS.gene09362.t1 AT1G55030 25.910 467 259 21 75 528 9 401 2.96e-16 81.6
MS.gene09362.t1 AT3G26930 27.051 451 252 18 74 515 20 402 3.58e-16 81.6
MS.gene09362.t1 AT5G56410 28.092 477 271 22 75 532 2 425 4.98e-16 81.6
MS.gene09362.t1 AT1G51370 31.739 230 106 8 73 301 17 196 5.47e-16 80.1
MS.gene09362.t1 AT5G22670 26.611 481 258 21 74 530 10 419 9.07e-16 80.5
MS.gene09362.t1 AT2G29930 27.861 402 196 19 75 448 12 347 1.64e-15 79.7
MS.gene09362.t1 AT2G29930 27.861 402 196 19 75 448 12 347 1.64e-15 79.7
MS.gene09362.t1 AT3G42770 26.737 475 272 20 80 539 4 417 1.79e-15 79.7
MS.gene09362.t1 AT5G53840 25.806 465 252 19 73 518 16 406 2.07e-15 79.3
MS.gene09362.t1 AT2G42720 28.230 418 202 20 75 455 2 358 2.10e-15 79.3
MS.gene09362.t1 AT4G15060 26.781 407 206 18 72 451 23 364 2.14e-15 79.0
MS.gene09362.t1 AT3G59240 26.087 391 224 13 75 447 8 351 2.66e-15 79.3
MS.gene09362.t1 AT3G26930 28.618 304 182 13 221 515 80 357 7.28e-15 77.4
MS.gene09362.t1 AT3G56780 24.099 527 283 19 77 546 9 475 8.53e-15 77.4
MS.gene09362.t1 AT1G78750 25.183 409 235 15 65 449 8 369 9.57e-15 77.4
MS.gene09362.t1 AT1G78750 25.183 409 235 15 65 449 8 369 9.57e-15 77.4
MS.gene09362.t1 AT1G66300 25.775 516 279 22 55 540 8 449 1.06e-14 77.0
MS.gene09362.t1 AT1G66310 26.263 495 268 20 70 540 14 435 1.11e-14 77.0
MS.gene09362.t1 AT2G42730 25.751 466 272 16 75 518 5 418 1.11e-14 77.0
MS.gene09362.t1 AT3G58900 29.805 359 173 14 75 400 2 314 1.48e-14 75.5
MS.gene09362.t1 AT3G49030 26.059 472 258 19 73 529 19 414 1.77e-14 76.3
MS.gene09362.t1 AT3G58900 30.028 363 173 15 75 402 2 318 1.89e-14 75.1
MS.gene09362.t1 AT3G58900 30.028 363 173 15 75 402 2 318 1.89e-14 75.1
MS.gene09362.t1 AT4G15060 27.401 354 180 14 65 396 162 460 2.01e-14 76.6
MS.gene09362.t1 AT1G05080 26.782 463 255 19 74 518 12 408 3.04e-14 75.5
MS.gene09362.t1 AT1G69630 25.000 408 228 13 65 448 8 361 3.99e-14 75.1
MS.gene09362.t1 AT5G56690 28.918 453 254 19 77 518 4 399 4.32e-14 74.7
MS.gene09362.t1 AT5G25860 26.485 404 230 18 75 455 12 371 5.68e-14 74.7
MS.gene09362.t1 AT5G22700 24.843 479 246 20 73 515 4 404 7.41e-14 74.3
MS.gene09362.t1 AT5G22700 24.843 479 246 20 73 515 4 404 7.41e-14 74.3
MS.gene09362.t1 AT5G22700 24.843 479 246 20 73 515 4 404 7.41e-14 74.3
MS.gene09362.t1 AT5G22700 24.843 479 246 20 73 515 4 404 7.41e-14 74.3
MS.gene09362.t1 AT5G22700 24.694 490 255 20 62 515 30 441 8.66e-14 74.3
MS.gene09362.t1 AT5G56820 23.722 489 270 18 75 549 15 414 9.01e-14 73.9
MS.gene09362.t1 AT1G13780 24.025 487 249 21 75 516 10 420 1.16e-13 73.9
MS.gene09362.t1 AT3G26920 24.242 363 233 12 194 542 4 338 4.02e-13 71.2
MS.gene09362.t1 AT3G26920 24.242 363 233 12 194 542 4 338 4.02e-13 71.2
MS.gene09362.t1 AT5G44950 25.106 470 258 18 75 518 4 405 4.20e-13 72.0
MS.gene09362.t1 AT5G38392 31.950 241 109 10 75 302 2 200 5.26e-13 68.9
MS.gene09362.t1 AT1G66290 25.370 473 254 18 70 518 24 421 7.29e-13 71.2
MS.gene09362.t1 AT4G09920 26.748 329 186 11 75 397 2 281 7.60e-13 70.1
MS.gene09362.t1 AT4G09920 26.748 329 186 11 75 397 2 281 7.60e-13 70.1
MS.gene09362.t1 AT5G53635 25.051 491 260 20 77 529 2 422 1.69e-12 70.1
MS.gene09362.t1 AT3G54160 28.135 327 196 11 143 448 22 330 2.48e-12 69.7
MS.gene09362.t1 AT4G09920 26.220 328 187 9 75 396 2 280 2.76e-12 68.2
MS.gene09362.t1 AT4G09920 26.220 328 187 9 75 396 2 280 2.76e-12 68.2
MS.gene09362.t1 AT4G09920 26.220 328 187 9 75 396 2 280 2.76e-12 68.2
MS.gene09362.t1 AT5G35995 25.366 410 217 17 75 455 5 354 5.12e-12 68.6
MS.gene09362.t1 AT5G35995 25.366 410 217 17 75 455 5 354 5.12e-12 68.6
MS.gene09362.t1 AT2G29930 33.061 245 107 15 229 448 15 227 9.18e-12 67.0
MS.gene09362.t1 AT5G22700 28.395 243 113 9 62 296 30 219 7.24e-11 65.1
MS.gene09362.t1 AT3G60040 25.260 384 244 13 75 448 13 363 7.88e-11 65.5
MS.gene09362.t1 AT3G60040 25.065 383 246 12 75 448 230 580 8.86e-11 65.1
MS.gene09362.t1 AT3G60040 25.260 384 244 13 75 448 232 582 8.99e-11 65.5
MS.gene09362.t1 AT3G60040 25.065 383 246 12 75 448 232 582 9.19e-11 65.1
MS.gene09362.t1 AT3G60040 25.260 384 244 13 75 448 233 583 9.80e-11 65.1

Find 99 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTACATTTGAATTTAA+AGG 0.124626 4.1:-42148830 MS.gene09362:CDS
TGAAGATTTGATTTCTTCTT+TGG 0.167215 4.1:+42150307 None:intergenic
AGAAATCCTCCTTACTAGTA+TGG 0.246783 4.1:-42148673 MS.gene09362:CDS
CTAAGGCTTGATAGCGAAAA+AGG 0.263082 4.1:-42150137 MS.gene09362:CDS
ATTGCAAGATCCTTAAGTTT+TGG 0.285282 4.1:+42149280 None:intergenic
GCAGATCGACTCCCATCTTT+TGG 0.302315 4.1:+42150385 None:intergenic
TCTATCTGGTTGTCCACATT+TGG 0.307537 4.1:-42149838 MS.gene09362:CDS
TAATTCAATTGAAGATCATT+TGG 0.321337 4.1:-42148289 MS.gene09362:CDS
AGTGGTCTTCATTGAAATCT+TGG 0.325383 4.1:+42148260 None:intergenic
AATAAATGAAGAAATGAAAT+TGG 0.326908 4.1:+42151766 None:intergenic
CTATATTCTCGGAGCGTCTT+TGG 0.336573 4.1:+42150273 None:intergenic
GTTTCCAACCTCCTCTCTTC+GGG 0.354469 4.1:+42148901 None:intergenic
TATTAGTTTGCCTATATTCT+CGG 0.378070 4.1:+42150262 None:intergenic
AGTTTCCAACCTCCTCTCTT+CGG 0.390900 4.1:+42148900 None:intergenic
TTTACTCAGGTGTTCAGCTC+AGG 0.398055 4.1:-42150522 MS.gene09362:intron
ACTCGTGGTCTTAAAATTGC+GGG 0.408358 4.1:-42149988 MS.gene09362:CDS
CAAAGACGCTCCGAGAATAT+AGG 0.415150 4.1:-42150272 MS.gene09362:CDS
AAAGTGAAGGTTGGGAATCT+TGG 0.417455 4.1:+42150361 None:intergenic
TTATACAAATTGTTAAAATC+CGG 0.418633 4.1:+42149582 None:intergenic
ACAGATCCAAGTCAAGTTCC+TGG 0.422138 4.1:+42150060 None:intergenic
ACAGAATGCTCCAAAACTTA+AGG 0.424972 4.1:-42149290 MS.gene09362:CDS
ATCTGGTTGTCCACATTTGG+AGG 0.433975 4.1:-42149835 MS.gene09362:CDS
ATTTCTTCTTTGGACATCAC+AGG 0.436128 4.1:+42150317 None:intergenic
AGGAGGTTGGAAACTCTAGA+TGG 0.436425 4.1:-42148892 MS.gene09362:CDS
TCAAAATATTAAAACTGAGT+TGG 0.440622 4.1:-42148804 MS.gene09362:CDS
GGTAATTGAAAGTGAAGGTT+GGG 0.443422 4.1:+42150353 None:intergenic
CAAGGTCCAGGAACTTGACT+TGG 0.457085 4.1:-42150066 MS.gene09362:CDS
ACTAATACTTGACAGTAAGA+TGG 0.466673 4.1:-42150246 MS.gene09362:CDS
AAATTCAAATGTAATGAGAC+TGG 0.466724 4.1:+42148835 None:intergenic
CATGTGTTCTATCCAAAAGA+TGG 0.467948 4.1:-42150397 MS.gene09362:CDS
ACGCACCTTATGAACACAAC+TGG 0.468437 4.1:+42151506 None:intergenic
GTGACTCACACGTGGAAAGC+TGG 0.470578 4.1:+42150009 None:intergenic
TCTTTGCATTTGCAAGCGTC+CGG 0.481989 4.1:-42149601 MS.gene09362:CDS
GCCACATGATGTACACTTGT+GGG 0.485379 4.1:-42150216 MS.gene09362:CDS
AAGGATCTTGCAATTGCGGT+TGG 0.485603 4.1:-42149271 MS.gene09362:CDS
AATTTGTATAAACTCTTGAA+AGG 0.493831 4.1:-42149570 MS.gene09362:CDS
AAGTAGGCATATATAACAAA+AGG 0.493857 4.1:+42149745 None:intergenic
ACTCACCAGTTGTGTTCATA+AGG 0.495931 4.1:-42151511 MS.gene09362:CDS
ACTTAAGGATCTTGCAATTG+CGG 0.496044 4.1:-42149275 MS.gene09362:CDS
GGCATTAGATCTCAAGGTCC+AGG 0.496808 4.1:-42150078 MS.gene09362:CDS
TTTCATTTCTTCATTTATTG+TGG 0.499534 4.1:-42151762 MS.gene09362:intron
TGTACACTTGTGGGTTTCAA+AGG 0.503354 4.1:-42150207 MS.gene09362:CDS
CTAATACTTGACAGTAAGAT+GGG 0.504263 4.1:-42150245 MS.gene09362:CDS
ATCAGAGACAAAATGTAGAA+AGG 0.507359 4.1:-42151798 MS.gene09362:intron
TAGAATACGCCACAGTTTCA+CGG 0.516230 4.1:+42149898 None:intergenic
GAAATCCTCCTTACTAGTAT+GGG 0.519980 4.1:-42148672 MS.gene09362:intron
ACTTCGTACCCATACTAGTA+AGG 0.520038 4.1:+42148664 None:intergenic
TCTCTTCAATAAGTGAAAAG+AGG 0.524063 4.1:+42149773 None:intergenic
TGTACACATGTGGGTTTCAA+AGG 0.528762 4.1:-42150099 MS.gene09362:CDS
ATCACAGGGTCTGAAATCTC+TGG 0.529937 4.1:+42150332 None:intergenic
CCGAAAATATAAGAAAACTA+AGG 0.538047 4.1:-42150154 MS.gene09362:CDS
CACTCGTGGTCTTAAAATTG+CGG 0.539007 4.1:-42149989 MS.gene09362:CDS
TTCAAAGGCATTAGATCTCA+AGG 0.542872 4.1:-42150084 MS.gene09362:CDS
GGTCTTCATTGAAATCTTGG+AGG 0.543456 4.1:+42148263 None:intergenic
AATGTCAAAACATTGGCTCT+CGG 0.545588 4.1:-42149540 MS.gene09362:CDS
TTTCTTCTTTGGACATCACA+GGG 0.548590 4.1:+42150318 None:intergenic
TGGTAATTGAAAGTGAAGGT+TGG 0.551378 4.1:+42150352 None:intergenic
GAGTTCAGAGTAACGGAAAG+AGG 0.552792 4.1:+42151530 None:intergenic
TGTTATGCAGTTTCTCAGCA+TGG 0.553413 4.1:-42149416 MS.gene09362:intron
TGAAATCAATTCCCGAAGAG+AGG 0.556742 4.1:-42148912 MS.gene09362:CDS
ATGTGTTCTATCCAAAAGAT+GGG 0.563690 4.1:-42150396 MS.gene09362:CDS
GACGGGGCATTAATTTGTAG+TGG 0.566180 4.1:+42149708 None:intergenic
ACTTTCTAATGTCAAAACAT+TGG 0.567332 4.1:-42149547 MS.gene09362:CDS
CAGGTGTTCAGCTCAGGTCA+TGG 0.572339 4.1:-42150516 MS.gene09362:CDS
GGTTTGTATCATACTTGAAG+AGG 0.572421 4.1:+42151921 None:intergenic
GGACAACACTTAATAGAAGT+AGG 0.574171 4.1:+42149729 None:intergenic
AAATATCTGAGAATTGCAGT+TGG 0.586019 4.1:-42149333 MS.gene09362:CDS
TGAAAAGAAGAATTGAGTGT+TGG 0.588267 4.1:+42149954 None:intergenic
AGACTGGTTGTAAGACATGC+CGG 0.589947 4.1:+42148851 None:intergenic
AAGTGAAAAGAGGTGTTGAT+CGG 0.590271 4.1:+42149783 None:intergenic
AAGAGCAGCTTCATCAAGAG+TGG 0.591791 4.1:+42149620 None:intergenic
GGTGGAGCCATCAGTAACTC+CGG 0.595318 4.1:-42148870 MS.gene09362:CDS
TCACACGTGGAAAGCTGGAG+CGG 0.598731 4.1:+42150014 None:intergenic
AAAACAAAGAAGAACAGAAG+TGG 0.599940 4.1:+42151474 None:intergenic
TCACTCAAGTAAGTTGCAGA+AGG 0.606565 4.1:-42148759 MS.gene09362:CDS
ACAAGTGTACATCATGTGGC+TGG 0.606670 4.1:+42150219 None:intergenic
AATTCCCGAAGAGAGGAGGT+TGG 0.607635 4.1:-42148905 MS.gene09362:CDS
AACTGGTGAGTTCAGAGTAA+CGG 0.609706 4.1:+42151523 None:intergenic
AGACATGCCGGAGTTACTGA+TGG 0.614504 4.1:+42148863 None:intergenic
GGAGGTTGGAAACTCTAGAT+GGG 0.616468 4.1:-42148891 MS.gene09362:CDS
TCTTCATCTCCGTGAAACTG+TGG 0.632446 4.1:-42149907 MS.gene09362:CDS
AATCAATTCCCGAAGAGAGG+AGG 0.632647 4.1:-42148909 MS.gene09362:CDS
TTCCACGTGTGAGTCACTCG+TGG 0.634670 4.1:-42150003 MS.gene09362:CDS
GGTTGGAAACTCTAGATGGG+TGG 0.637888 4.1:-42148888 MS.gene09362:CDS
GGTGTTGATCGGTAATGCAA+AGG 0.638827 4.1:+42149794 None:intergenic
AGCCACATGATGTACACTTG+TGG 0.639873 4.1:-42150217 MS.gene09362:CDS
ACATGTGTACATCATGTGAC+TGG 0.652666 4.1:+42150111 None:intergenic
AAAAGAAGTTCCTCCAAATG+TGG 0.655154 4.1:+42149825 None:intergenic
ACTAGATTAAGAGGGTTGAG+TGG 0.660822 4.1:+42148242 None:intergenic
AAAGAAGAACAGAAGTGGTG+AGG 0.663957 4.1:+42151479 None:intergenic
CTCGTGGTCTTAAAATTGCG+GGG 0.673910 4.1:-42149987 MS.gene09362:CDS
TCGTACCCATACTAGTAAGG+AGG 0.674938 4.1:+42148667 None:intergenic
GTCACATGATGTACACATGT+GGG 0.678429 4.1:-42150108 MS.gene09362:CDS
AGATGAAGAATCTTTAGCGA+CGG 0.678834 4.1:+42149921 None:intergenic
GACCACGAGTGACTCACACG+TGG 0.682798 4.1:+42150001 None:intergenic
ACCCACAAGTGTACATCATG+TGG 0.692380 4.1:+42150215 None:intergenic
TCTCTGGTAATTGAAAGTGA+AGG 0.696256 4.1:+42150348 None:intergenic
TATGCAGTTTCTCAGCATGG+AGG 0.703511 4.1:-42149413 MS.gene09362:intron
AGTCACATGATGTACACATG+TGG 0.706369 4.1:-42150109 MS.gene09362:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATTAATTAATTTGTTTAA+CGG + chr4.1:42151092-42151111 None:intergenic 10.0%
!!! TAAATACAAATGTTAATTTT+TGG - chr4.1:42151246-42151265 MS.gene09362:intron 10.0%
!! AATAAATGAAGAAATGAAAT+TGG + chr4.1:42148437-42148456 None:intergenic 15.0%
!! AGATAAAATTGTAAGTAAAA+TGG + chr4.1:42151178-42151197 None:intergenic 15.0%
!! ATGTAATTAAAAAATTTGAG+AGG + chr4.1:42151801-42151820 None:intergenic 15.0%
!! TTATACAAATTGTTAAAATC+CGG + chr4.1:42150621-42150640 None:intergenic 15.0%
!!! AATTATTCAATATTTGTTAC+AGG - chr4.1:42151884-42151903 MS.gene09362:intron 15.0%
!!! TTATATACTTTCTGTTTTAA+TGG - chr4.1:42151589-42151608 MS.gene09362:intron 15.0%
!! AAGTAAAATGGTTTAAAAGA+AGG + chr4.1:42151166-42151185 None:intergenic 20.0%
!! AATTTGTATAAACTCTTGAA+AGG - chr4.1:42150630-42150649 MS.gene09362:intron 20.0%
!! CTCATTACATTTGAATTTAA+AGG - chr4.1:42151370-42151389 MS.gene09362:intron 20.0%
!! GATTGATAAATAGAAAATGA+TGG + chr4.1:42149551-42149570 None:intergenic 20.0%
!! TAATTCAATTGAAGATCATT+TGG - chr4.1:42151911-42151930 MS.gene09362:intron 20.0%
!! TATATATACAATTACATTCG+TGG - chr4.1:42151737-42151756 MS.gene09362:intron 20.0%
!! TCAAAATATTAAAACTGAGT+TGG - chr4.1:42151396-42151415 MS.gene09362:intron 20.0%
!! TTAAGTGCATAGTAAAAAAA+AGG + chr4.1:42148508-42148527 None:intergenic 20.0%
!! TTTCATTTCTTCATTTATTG+TGG - chr4.1:42148438-42148457 MS.gene09362:intron 20.0%
!!! ATTTTTTATGAAGGGTAATA+TGG - chr4.1:42149286-42149305 MS.gene09362:CDS 20.0%
!!! CCTTAGTTTTCTTATATTTT+CGG + chr4.1:42150049-42150068 None:intergenic 20.0%
!!! CTATTGATAATGTGATTTTA+GGG - chr4.1:42148790-42148809 MS.gene09362:CDS 20.0%
!!! CTTTTAACATTTTCAAATCA+TGG - chr4.1:42149113-42149132 MS.gene09362:intron 20.0%
!!! TTTTCACATTTTTCTGATAA+AGG + chr4.1:42149034-42149053 None:intergenic 20.0%
!!! TTTTTTATGAAGGGTAATAT+GGG - chr4.1:42149287-42149306 MS.gene09362:CDS 20.0%
! AAATTCAAATGTAATGAGAC+TGG + chr4.1:42151368-42151387 None:intergenic 25.0%
! AAGTAACAAATCTTAGGAAT+AGG + chr4.1:42149582-42149601 None:intergenic 25.0%
! AAGTAGGCATATATAACAAA+AGG + chr4.1:42150458-42150477 None:intergenic 25.0%
! AATACCTAGTAAAAGATACA+TGG - chr4.1:42151051-42151070 MS.gene09362:intron 25.0%
! AATGAGAATAGAATTGCATA+TGG + chr4.1:42150755-42150774 None:intergenic 25.0%
! AATGTTCATGGATTCTAAAT+GGG - chr4.1:42148991-42149010 MS.gene09362:intron 25.0%
! ACTTTCTAATGTCAAAACAT+TGG - chr4.1:42150653-42150672 MS.gene09362:intron 25.0%
! AGTATATGCTATATATCAGT+TGG - chr4.1:42151223-42151242 MS.gene09362:intron 25.0%
! ATATGAAAAACTTCAAGTGA+CGG + chr4.1:42150513-42150532 None:intergenic 25.0%
! ATGAGAATAGAATTGCATAT+GGG + chr4.1:42150754-42150773 None:intergenic 25.0%
! ATTTATAGTCGAGAAGAATT+AGG + chr4.1:42148384-42148403 None:intergenic 25.0%
! CCGAAAATATAAGAAAACTA+AGG - chr4.1:42150046-42150065 MS.gene09362:CDS 25.0%
! CCTAAAATCACATTATCAAT+AGG + chr4.1:42148792-42148811 None:intergenic 25.0%
! GGTAGTATGTTAATATTTGT+TGG - chr4.1:42151620-42151639 MS.gene09362:intron 25.0%
! TAAAAGAAGGTTAAATTGCT+AGG + chr4.1:42151153-42151172 None:intergenic 25.0%
! TTTATAGTCGAGAAGAATTA+GGG + chr4.1:42148383-42148402 None:intergenic 25.0%
!! GAAAGTATATAAACTCTGTA+TGG + chr4.1:42151581-42151600 None:intergenic 25.0%
!! GTATGTTAATATTTGTTGGT+AGG - chr4.1:42151624-42151643 MS.gene09362:intron 25.0%
!! TAGAAAATGATGGAAAATAG+AGG + chr4.1:42149541-42149560 None:intergenic 25.0%
!! TAGTGATTTTTCTGTCTTTT+AGG - chr4.1:42148957-42148976 MS.gene09362:intron 25.0%
!! TGAAGATTTGATTTCTTCTT+TGG + chr4.1:42149896-42149915 None:intergenic 25.0%
!! TTTGTGAAGTCATATTTTCT+AGG + chr4.1:42150555-42150574 None:intergenic 25.0%
!!! AGTAACATTTTTCAGGAATT+GGG - chr4.1:42148894-42148913 MS.gene09362:CDS 25.0%
!!! ATGTTGGTGATTTTTTATGA+AGG - chr4.1:42149277-42149296 MS.gene09362:CDS 25.0%
!!! CCTATTGATAATGTGATTTT+AGG - chr4.1:42148789-42148808 MS.gene09362:CDS 25.0%
!!! TAATTTTTGGTTTACATGCA+GGG - chr4.1:42151259-42151278 MS.gene09362:intron 25.0%
!!! TATTAGTTTGCCTATATTCT+CGG + chr4.1:42149941-42149960 None:intergenic 25.0%
!!! TGTTGGTGATTTTTTATGAA+GGG - chr4.1:42149278-42149297 MS.gene09362:CDS 25.0%
!!! TTAATTTTTGGTTTACATGC+AGG - chr4.1:42151258-42151277 MS.gene09362:intron 25.0%
AAAACAAAGAAGAACAGAAG+TGG + chr4.1:42148729-42148748 None:intergenic 30.0%
AAATATCTGAGAATTGCAGT+TGG - chr4.1:42150867-42150886 MS.gene09362:intron 30.0%
AAATGTGAAAACCTTGAACT+TGG - chr4.1:42149043-42149062 MS.gene09362:intron 30.0%
AACATAAGAAGCTGAAAATC+TGG - chr4.1:42151015-42151034 MS.gene09362:intron 30.0%
AAGAGAAGATGAAAGTTCTA+TGG + chr4.1:42151664-42151683 None:intergenic 30.0%
ACTAATACTTGACAGTAAGA+TGG - chr4.1:42149954-42149973 MS.gene09362:CDS 30.0%
AGTAGAAAAAAGTTTACGCA+AGG - chr4.1:42151498-42151517 MS.gene09362:CDS 30.0%
ATCAGAGACAAAATGTAGAA+AGG - chr4.1:42148402-42148421 MS.gene09362:intron 30.0%
ATGTGTTCTATCCAAAAGAT+GGG - chr4.1:42149804-42149823 MS.gene09362:CDS 30.0%
CAATGTTCATGGATTCTAAA+TGG - chr4.1:42148990-42149009 MS.gene09362:intron 30.0%
CTAATACTTGACAGTAAGAT+GGG - chr4.1:42149955-42149974 MS.gene09362:CDS 30.0%
GAAATGATTGAAAAGCAAAG+AGG + chr4.1:42148312-42148331 None:intergenic 30.0%
GAATTTGAAGAAACTCTATG+AGG + chr4.1:42148547-42148566 None:intergenic 30.0%
GTAGAAAAAAGTTTACGCAA+GGG - chr4.1:42151499-42151518 MS.gene09362:CDS 30.0%
TAGAAAAAAGTTTACGCAAG+GGG - chr4.1:42151500-42151519 MS.gene09362:CDS 30.0%
TATAGACATGATTTCGACAA+GGG + chr4.1:42149426-42149445 None:intergenic 30.0%
TATGAAAAACTTCAAGTGAC+GGG + chr4.1:42150512-42150531 None:intergenic 30.0%
TCTCTTCAATAAGTGAAAAG+AGG + chr4.1:42150430-42150449 None:intergenic 30.0%
TGAAAAGAAGAATTGAGTGT+TGG + chr4.1:42150249-42150268 None:intergenic 30.0%
TTATAGACATGATTTCGACA+AGG + chr4.1:42149427-42149446 None:intergenic 30.0%
TTCCAGAAGTAACAAATCTT+AGG + chr4.1:42149588-42149607 None:intergenic 30.0%
! AACTCCATGTATCTTTTACT+AGG + chr4.1:42151058-42151077 None:intergenic 30.0%
! AAGCTTCAGTAACATTTTTC+AGG - chr4.1:42148887-42148906 MS.gene09362:CDS 30.0%
! ACATTTTATCAGCTGAAACT+TGG + chr4.1:42149330-42149349 None:intergenic 30.0%
! ATTGCAAGATCCTTAAGTTT+TGG + chr4.1:42150923-42150942 None:intergenic 30.0%
!! CATTTCATTTTGACCATTCT+TGG - chr4.1:42148326-42148345 MS.gene09362:intron 30.0%
!! TGAGGTTTTTCAAACAATGT+TGG - chr4.1:42149261-42149280 MS.gene09362:CDS 30.0%
!! TTCCTAAGATTTGTTACTTC+TGG - chr4.1:42149583-42149602 MS.gene09362:CDS 30.0%
!!! CAGTAACATTTTTCAGGAAT+TGG - chr4.1:42148893-42148912 MS.gene09362:CDS 30.0%
!!! GTAACATTTTTCAGGAATTG+GGG - chr4.1:42148895-42148914 MS.gene09362:CDS 30.0%
!!! TCTGTTTTAATGGAAAGAGT+TGG - chr4.1:42151599-42151618 MS.gene09362:intron 30.0%
!!! TTTTCTGTCTTTTAGGACAA+TGG - chr4.1:42148964-42148983 MS.gene09362:intron 30.0%
AAAAGAAGTTCCTCCAAATG+TGG + chr4.1:42150378-42150397 None:intergenic 35.0%
AACAAGACAGAACAACATTC+AGG - chr4.1:42149212-42149231 MS.gene09362:intron 35.0%
ACAGAATGCTCCAAAACTTA+AGG - chr4.1:42150910-42150929 MS.gene09362:intron 35.0%
ACATTTGTACAAACATTGCC+CGG - chr4.1:42149478-42149497 MS.gene09362:intron 35.0%
ACTTAAGGATCTTGCAATTG+CGG - chr4.1:42150925-42150944 MS.gene09362:intron 35.0%
AGAAATCCTCCTTACTAGTA+TGG - chr4.1:42151527-42151546 MS.gene09362:CDS 35.0%
AGATGAAGAATCTTTAGCGA+CGG + chr4.1:42150282-42150301 None:intergenic 35.0%
AGTGGTCTTCATTGAAATCT+TGG + chr4.1:42151943-42151962 None:intergenic 35.0%
ATGAAAAACTTCAAGTGACG+GGG + chr4.1:42150511-42150530 None:intergenic 35.0%
ATGGTCCAAATCAAAAGCAA+TGG - chr4.1:42149132-42149151 MS.gene09362:intron 35.0%
ATTTCTTCTTTGGACATCAC+AGG + chr4.1:42149886-42149905 None:intergenic 35.0%
CATGTGTTCTATCCAAAAGA+TGG - chr4.1:42149803-42149822 MS.gene09362:CDS 35.0%
CTATCATTCCCTCAAAAGAT+GGG + chr4.1:42149182-42149201 None:intergenic 35.0%
CTGTATATAGAAGCAATGAC+CGG + chr4.1:42149500-42149519 None:intergenic 35.0%
GAAAAGCAAAGAGGAAAAGA+AGG + chr4.1:42148303-42148322 None:intergenic 35.0%
GAAATCCTCCTTACTAGTAT+GGG - chr4.1:42151528-42151547 MS.gene09362:CDS 35.0%
GGACAACACTTAATAGAAGT+AGG + chr4.1:42150474-42150493 None:intergenic 35.0%
GGTAATTGAAAGTGAAGGTT+GGG + chr4.1:42149850-42149869 None:intergenic 35.0%
GGTTTGTATCATACTTGAAG+AGG + chr4.1:42148282-42148301 None:intergenic 35.0%
GTGAAAAAGAGACCTTAACA+AGG + chr4.1:42149362-42149381 None:intergenic 35.0%
TATCATTCCCTCAAAAGATG+GGG + chr4.1:42149181-42149200 None:intergenic 35.0%
TCTATCATTCCCTCAAAAGA+TGG + chr4.1:42149183-42149202 None:intergenic 35.0%
TCTCTGGTAATTGAAAGTGA+AGG + chr4.1:42149855-42149874 None:intergenic 35.0%
TGCATATGGGAGACTAAATA+TGG + chr4.1:42150741-42150760 None:intergenic 35.0%
TGGTAATTGAAAGTGAAGGT+TGG + chr4.1:42149851-42149870 None:intergenic 35.0%
TGTATATAGAAGCAATGACC+GGG + chr4.1:42149499-42149518 None:intergenic 35.0%
TTTCTCTGATACCAAGTTCA+AGG + chr4.1:42149057-42149076 None:intergenic 35.0%
TTTCTTCTTTGGACATCACA+GGG + chr4.1:42149885-42149904 None:intergenic 35.0%
! ATCATGTCATAGCTTTACTC+AGG - chr4.1:42149665-42149684 MS.gene09362:CDS 35.0%
! ATTTGTTGGTAGGATGTTGT+GGG - chr4.1:42151634-42151653 MS.gene09362:intron 35.0%
! GCTCTCAATGATTTTCTATC+TGG - chr4.1:42150348-42150367 MS.gene09362:CDS 35.0%
! TATTTGTTGGTAGGATGTTG+TGG - chr4.1:42151633-42151652 MS.gene09362:intron 35.0%
!! AAGTGAAAAGAGGTGTTGAT+CGG + chr4.1:42150420-42150439 None:intergenic 35.0%
!! AATGTCAAAACATTGGCTCT+CGG - chr4.1:42150660-42150679 MS.gene09362:intron 35.0%
!! GGTTTCCATTGCTTTTGATT+TGG + chr4.1:42149140-42149159 None:intergenic 35.0%
!! TTATATTTTCGGTGCGTCTT+AGG + chr4.1:42150038-42150057 None:intergenic 35.0%
!! TTCAAAGGCATTAGATCTCA+AGG - chr4.1:42150116-42150135 MS.gene09362:CDS 35.0%
!!! GAACAACATTCAGGTTGTTT+TGG - chr4.1:42149221-42149240 MS.gene09362:intron 35.0%
!!! GAATTGGGGTTGGTTTTATA+GGG - chr4.1:42148909-42148928 MS.gene09362:CDS 35.0%
!!! GCGGCAATAAAACTTTTTCA+TGG + chr4.1:42150170-42150189 None:intergenic 35.0%
!!! TCAGGTTGTTTTGGTCTTTT+TGG - chr4.1:42149230-42149249 MS.gene09362:intron 35.0%
AAAGAAGAACAGAAGTGGTG+AGG + chr4.1:42148724-42148743 None:intergenic 40.0%
AAAGTGAAGGTTGGGAATCT+TGG + chr4.1:42149842-42149861 None:intergenic 40.0%
AACTGGTGAGTTCAGAGTAA+CGG + chr4.1:42148680-42148699 None:intergenic 40.0%
AAGCCATAAAGCTGTGTTGA+TGG + chr4.1:42151710-42151729 None:intergenic 40.0%
ACATGTGTACATCATGTGAC+TGG + chr4.1:42150092-42150111 None:intergenic 40.0%
ACTCACCAGTTGTGTTCATA+AGG - chr4.1:42148689-42148708 MS.gene09362:CDS 40.0%
ACTTCGTACCCATACTAGTA+AGG + chr4.1:42151539-42151558 None:intergenic 40.0%
AGTCACATGATGTACACATG+TGG - chr4.1:42150091-42150110 MS.gene09362:CDS 40.0%
GACAATGGTAGCAATGTTCA+TGG - chr4.1:42148979-42148998 MS.gene09362:intron 40.0%
GGTCTTCATTGAAATCTTGG+AGG + chr4.1:42151940-42151959 None:intergenic 40.0%
GTCACATGATGTACACATGT+GGG - chr4.1:42150092-42150111 MS.gene09362:CDS 40.0%
TAGAATACGCCACAGTTTCA+CGG + chr4.1:42150305-42150324 None:intergenic 40.0%
TATCAGCTGAAACTTGGCTT+AGG + chr4.1:42149324-42149343 None:intergenic 40.0%
TCACTCAAGTAAGTTGCAGA+AGG - chr4.1:42151441-42151460 MS.gene09362:intron 40.0%
TCTATCTGGTTGTCCACATT+TGG - chr4.1:42150362-42150381 MS.gene09362:CDS 40.0%
TGAAATCAATTCCCGAAGAG+AGG - chr4.1:42151288-42151307 MS.gene09362:intron 40.0%
TGTACACATGTGGGTTTCAA+AGG - chr4.1:42150101-42150120 MS.gene09362:CDS 40.0%
TGTACACTTGTGGGTTTCAA+AGG - chr4.1:42149993-42150012 MS.gene09362:CDS 40.0%
TGTTATGCAGTTTCTCAGCA+TGG - chr4.1:42150784-42150803 MS.gene09362:intron 40.0%
TTGTGACATGTGACCAAGAA+TGG + chr4.1:42148342-42148361 None:intergenic 40.0%
! ACTCGTGGTCTTAAAATTGC+GGG - chr4.1:42150212-42150231 MS.gene09362:CDS 40.0%
! CACTCGTGGTCTTAAAATTG+CGG - chr4.1:42150211-42150230 MS.gene09362:CDS 40.0%
! TGTTGCTTGAGACCTTGTTA+AGG - chr4.1:42149347-42149366 MS.gene09362:CDS 40.0%
! TTCTGAACCCCATCTTTTGA+GGG - chr4.1:42149171-42149190 MS.gene09362:intron 40.0%
! TTTGTTGGTAGGATGTTGTG+GGG - chr4.1:42151635-42151654 MS.gene09362:intron 40.0%
!! CATAAAGCTGTGTTGATGGT+CGG + chr4.1:42151706-42151725 None:intergenic 40.0%
!! CTAAGGCTTGATAGCGAAAA+AGG - chr4.1:42150063-42150082 MS.gene09362:CDS 40.0%
!! GTCTTTTTGGCAGAAAGTTG+AGG - chr4.1:42149243-42149262 MS.gene09362:intron 40.0%
!!! CATTTTTCAGGAATTGGGGT+TGG - chr4.1:42148899-42148918 MS.gene09362:CDS 40.0%
!!! GGAATTGGGGTTGGTTTTAT+AGG - chr4.1:42148908-42148927 MS.gene09362:CDS 40.0%
!!! GGTTGGTTTTATAGGGATTG+TGG - chr4.1:42148916-42148935 MS.gene09362:CDS 40.0%
AAGAGCAGCTTCATCAAGAG+TGG + chr4.1:42150583-42150602 None:intergenic 45.0%
AAGGATCTTGCAATTGCGGT+TGG - chr4.1:42150929-42150948 MS.gene09362:intron 45.0%
AATCAATTCCCGAAGAGAGG+AGG - chr4.1:42151291-42151310 MS.gene09362:intron 45.0%
ACAAGTGTACATCATGTGGC+TGG + chr4.1:42149984-42150003 None:intergenic 45.0%
ACAGATCCAAGTCAAGTTCC+TGG + chr4.1:42150143-42150162 None:intergenic 45.0%
ACCCACAAGTGTACATCATG+TGG + chr4.1:42149988-42150007 None:intergenic 45.0%
ACGCACCTTATGAACACAAC+TGG + chr4.1:42148697-42148716 None:intergenic 45.0%
AGCCACATGATGTACACTTG+TGG - chr4.1:42149983-42150002 MS.gene09362:CDS 45.0%
AGGAGGTTGGAAACTCTAGA+TGG - chr4.1:42151308-42151327 MS.gene09362:intron 45.0%
AGTTTCCAACCTCCTCTCTT+CGG + chr4.1:42151303-42151322 None:intergenic 45.0%
ATCTGGTTGTCCACATTTGG+AGG - chr4.1:42150365-42150384 MS.gene09362:CDS 45.0%
CAAAGACGCTCCGAGAATAT+AGG - chr4.1:42149928-42149947 MS.gene09362:CDS 45.0%
CGACCATCAACACAGCTTTA+TGG - chr4.1:42151704-42151723 MS.gene09362:intron 45.0%
GCCACATGATGTACACTTGT+GGG - chr4.1:42149984-42150003 MS.gene09362:CDS 45.0%
GGAGGTTGGAAACTCTAGAT+GGG - chr4.1:42151309-42151328 MS.gene09362:intron 45.0%
GGGTTCAGAACAAGACATCA+AGG + chr4.1:42149161-42149180 None:intergenic 45.0%
TATGCAGTTTCTCAGCATGG+AGG - chr4.1:42150787-42150806 MS.gene09362:intron 45.0%
TCGTACCCATACTAGTAAGG+AGG + chr4.1:42151536-42151555 None:intergenic 45.0%
TCTTCATCTCCGTGAAACTG+TGG - chr4.1:42150293-42150312 MS.gene09362:CDS 45.0%
TCTTTGCATTTGCAAGCGTC+CGG - chr4.1:42150599-42150618 MS.gene09362:intron 45.0%
TTTACTCAGGTGTTCAGCTC+AGG - chr4.1:42149678-42149697 MS.gene09362:CDS 45.0%
! AGACTGGTTGTAAGACATGC+CGG + chr4.1:42151352-42151371 None:intergenic 45.0%
! ATCACAGGGTCTGAAATCTC+TGG + chr4.1:42149871-42149890 None:intergenic 45.0%
! CTATATTCTCGGAGCGTCTT+TGG + chr4.1:42149930-42149949 None:intergenic 45.0%
! CTCGTGGTCTTAAAATTGCG+GGG - chr4.1:42150213-42150232 MS.gene09362:CDS 45.0%
! GAGTTCAGAGTAACGGAAAG+AGG + chr4.1:42148673-42148692 None:intergenic 45.0%
!! GACGGGGCATTAATTTGTAG+TGG + chr4.1:42150495-42150514 None:intergenic 45.0%
!! GGTGTTGATCGGTAATGCAA+AGG + chr4.1:42150409-42150428 None:intergenic 45.0%
!! GTTCTGAACCCCATCTTTTG+AGG - chr4.1:42149170-42149189 MS.gene09362:intron 45.0%
!! ATTAAAAAAGAAAAATATTT+AGG + chr4.1:42150710-42150729 None:intergenic 5.0%
AATTCCCGAAGAGAGGAGGT+TGG - chr4.1:42151295-42151314 MS.gene09362:intron 50.0%
AGACATGCCGGAGTTACTGA+TGG + chr4.1:42151340-42151359 None:intergenic 50.0%
CAAGGTCCAGGAACTTGACT+TGG - chr4.1:42150134-42150153 MS.gene09362:CDS 50.0%
GGCATTAGATCTCAAGGTCC+AGG - chr4.1:42150122-42150141 MS.gene09362:CDS 50.0%
GGTTGGAAACTCTAGATGGG+TGG - chr4.1:42151312-42151331 MS.gene09362:intron 50.0%
GTTTCCAACCTCCTCTCTTC+GGG + chr4.1:42151302-42151321 None:intergenic 50.0%
!! GCAGATCGACTCCCATCTTT+TGG + chr4.1:42149818-42149837 None:intergenic 50.0%
CAGGTGTTCAGCTCAGGTCA+TGG - chr4.1:42149684-42149703 MS.gene09362:CDS 55.0%
GGTGGAGCCATCAGTAACTC+CGG - chr4.1:42151330-42151349 MS.gene09362:intron 55.0%
GTGACTCACACGTGGAAAGC+TGG + chr4.1:42150194-42150213 None:intergenic 55.0%
TCACACGTGGAAAGCTGGAG+CGG + chr4.1:42150189-42150208 None:intergenic 55.0%
TTCCACGTGTGAGTCACTCG+TGG - chr4.1:42150197-42150216 MS.gene09362:CDS 55.0%
! GTTGGTAGGATGTTGTGGGG+TGG - chr4.1:42151638-42151657 MS.gene09362:intron 55.0%
GACCACGAGTGACTCACACG+TGG + chr4.1:42150202-42150221 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 42148248 42151974 42148248 ID=MS.gene09362
chr4.1 mRNA 42148248 42151974 42148248 ID=MS.gene09362.t1;Parent=MS.gene09362
chr4.1 exon 42151935 42151974 42151935 ID=MS.gene09362.t1.exon1;Parent=MS.gene09362.t1
chr4.1 CDS 42151935 42151974 42151935 ID=cds.MS.gene09362.t1;Parent=MS.gene09362.t1
chr4.1 exon 42151763 42151815 42151763 ID=MS.gene09362.t1.exon2;Parent=MS.gene09362.t1
chr4.1 CDS 42151763 42151815 42151763 ID=cds.MS.gene09362.t1;Parent=MS.gene09362.t1
chr4.1 exon 42151489 42151577 42151489 ID=MS.gene09362.t1.exon3;Parent=MS.gene09362.t1
chr4.1 CDS 42151489 42151577 42151489 ID=cds.MS.gene09362.t1;Parent=MS.gene09362.t1
chr4.1 exon 42149524 42150535 42149524 ID=MS.gene09362.t1.exon4;Parent=MS.gene09362.t1
chr4.1 CDS 42149524 42150535 42149524 ID=cds.MS.gene09362.t1;Parent=MS.gene09362.t1
chr4.1 exon 42149261 42149428 42149261 ID=MS.gene09362.t1.exon5;Parent=MS.gene09362.t1
chr4.1 CDS 42149261 42149428 42149261 ID=cds.MS.gene09362.t1;Parent=MS.gene09362.t1
chr4.1 exon 42148673 42148942 42148673 ID=MS.gene09362.t1.exon6;Parent=MS.gene09362.t1
chr4.1 CDS 42148673 42148942 42148673 ID=cds.MS.gene09362.t1;Parent=MS.gene09362.t1
chr4.1 exon 42148248 42148316 42148248 ID=MS.gene09362.t1.exon7;Parent=MS.gene09362.t1
chr4.1 CDS 42148248 42148316 42148248 ID=cds.MS.gene09362.t1;Parent=MS.gene09362.t1
Gene Sequence

>MS.gene09362

ATGGCAGAGCAAGTACAGCAACTGAATGCTTCCTCTTCAAGTATGATACAAACCTTCTTTTCCTCTTTGCTTTTCAATCATTTCATTTTGACCATTCTTGGTCACATGTCACAATCTCAACACTCTTGCTAACCCTAATTCTTCTCGACTATAAATCAGAGACAAAATGTAGAAAGGAAAACACTACCAATTTCATTTCTTCATTTATTGTGGTAATTCTCAATGTCTTTTGTTTCAACTCATTTATCATATTTCAACCTTTTTTTTACTATGCACTTAACATGTTTGTTAAAACTCCTCATAGAGTTTCTTCAAATTCTGATTCAGAAACTTTGATTTTTTGTTACATTTGCAGAACTATTCTTGATTTCTAATTGATATTTGTTTGTTTCTACAGAAAAGCGCGAAAACAACAACGTTCACCTCTTTCCGTTACTCTGAACTCACCAGTTGTGTTCATAAGGTGCGTGCGACCTCACCACTTCTGTTCTTCTTTGTTTTTCAATTCAGTTTTCTATTCAACTGCTAATTTGAGCTTAGTCCTATTGATAATGTGATTTTAGGGTTTCTGTTAGCTGTTGATTTTTTGTTGTTACTGTACAAATTTCTGACTTAATAAAATCATGTCTATAATTATGAAAGCTTCAGTAACATTTTTCAGGAATTGGGGTTGGTTTTATAGGGATTGTGGTAACTGAAAGTTTTCTAGTAGTGATTTTTCTGTCTTTTAGGACAATGGTAGCAATGTTCATGGATTCTAAATGGGAAGACACAAAGTTTAAACCTTTATCAGAAAAATGTGAAAACCTTGAACTTGGTATCAGAGAAATTGTTGAGTTAACAGTTTGAAGAAACTCAATCATAGCTTTTAACATTTTCAAATCATGGTCCAAATCAAAAGCAATGGAAACCTTGATGTCTTGTTCTGAACCCCATCTTTTGAGGGAATGATAGAGATTTTTCAAACAAGACAGAACAACATTCAGGTTGTTTTGGTCTTTTTGGCAGAAAGTTGAGGTTTTTCAAACAATGTTGGTGATTTTTTATGAAGGGTAATATGGGAAAATGTTTAACCTAAGCCAAGTTTCAGCTGATAAAATGTTGCTTGAGACCTTGTTAAGGTCTCTTTTTCACATGTGTGCATTCTGACTATTTTTATTACATATTGCAAGTTTCCCTTGTCGAAATCATGTCTATAATTATGACAGCTTCAGTAACATTTTTCATGTAACATTTGTACAAACATTGCCCGGTCATTGCTTCTATATACAGTTTTCACTTATATTCATTCCTCTATTTTCCATCATTTTCTATTTATCAATCATTTTGTACCTATTCCTAAGATTTGTTACTTCTGGAATCTAATTTTATTGAAATTGCGTTAATCTCTCTGTTTATTGCTAATGAAATCTCTTCAATCATGTCATAGCTTTACTCAGGTGTTCAGCTCAGGTCATGGCGTGCTCTGATGAAAAACATGATCGATTAAGCAATCTCTCAGACGATTTGATTTGTCATATTTGTTCTTTTCTATCAACAAAAGAGTCTTATAGAACATGTGTTCTATCCAAAAGATGGGAGTCGATCTGCACCAAGATTCCCAACCTTCACTTTCAATTACCAGAGATTTCAGACCCTGTGATGTCCAAAGAAGAAATCAAATCTTCACAGCTTGCTTTCCAAAGACGCTCCGAGAATATAGGCAAACTAATACTTGACAGTAAGATGGGCTGCCAGCCACATGATGTACACTTGTGGGTTTCAAAGGCATTTGTAAATTTTGCTCTCCTAAGACGCACCGAAAATATAAGAAAACTAAGGCTTGATAGCGAAAAAGGCTGCCAGTCACATGATGTACACATGTGGGTTTCAAAGGCATTAGATCTCAAGGTCCAGGAACTTGACTTGGATCTGTTTCTCCATGAAAAAGTTTTATTGCCGCTCCAGCTTTCCACGTGTGAGTCACTCGTGGTCTTAAAATTGCGGGGCAGAATTCAACCAACACTCAATTCTTCTTTTCATGTATATTTACCGTCGCTAAAGATTCTTCATCTCCGTGAAACTGTGGCGTATTCTATGTTTGATGACAGTAAAGAGTATGCTCTCAATGATTTTCTATCTGGTTGTCCACATTTGGAGGAACTTCTTTTGCATGAGACCTTTGCATTACCGATCAACACCTCTTTTCACTTATTGAAGAGATTATTCCTTTTGTTATATATGCCTACTTCTATTAAGTGTTGTCCACTACAAATTAATGCCCCGTCACTTGAAGTTTTTCATATAGCTGATCTTTCATTGACTCCTAGAAAATATGACTTCACAAACTTATCCACTCTTGATGAAGCTGCTCTTTGCATTTGCAAGCGTCCGGATTTTAACAATTTGTATAAACTCTTGAAAGGACTTTCTAATGTCAAAACATTGGCTCTCGGTTCTAAAACTTTTCATGTAAGTTTCCTAAATATTTTTCTTTTTTAATTACAAGTTCCATATTTAGTCTCCCATATGCAATTCTATTCTCATTTTATAATTTTGTTATGCAGTTTCTCAGCATGGAGGACAAACTTGACAGCTTGCATCTTCTCACTTTTCACAATTTATTATTTTTAACAGTTGAAATATCTGAGAATTGCAGTTGGAATATGCTCATCAGCTTTCTACAGAATGCTCCAAAACTTAAGGATCTTGCAATTGCGGTTGGAATTCAGTGTGTATGAAGTTTTTTTTAACTATATTTGCACAATATATTTTTTTTAAAAGATAAAACATAAGAAGCTGAAAATCTGGCACAAGAAGAGCAAATACCTAGTAAAAGATACATGGAGTTTGCAAATAAAACCGTTAAACAAATTAATTAATTCAAAACAATCTATATCTGATCTATATTTGTGTAGATTTTCCTAGCAATTTAACCTTCTTTTAAACCATTTTACTTACAATTTTATCTTTATTTTCTTAATAATGTAATTGAAAGTATATGCTATATATCAGTTGGTAAATACAAATGTTAATTTTTGGTTTACATGCAGGGAAAATTTGAAATCAATTCCCGAAGAGAGGAGGTTGGAAACTCTAGATGGGTGGAGCCATCAGTAACTCCGGCATGTCTTACAACCAGTCTCATTACATTTGAATTTAAAGGAATTCAAAATATTAAAACTGAGTTGGACTTTACGCGATATATTGTAAGTCACTCAAGTAAGTTGCAGAAGGTAAAGATTTTCACACTCAGTTCAAAGAAAAGAAGAGTAGAAAAAAGTTTACGCAAGGGGTCAAAGAAATCCTCCTTACTAGTATGGGTACGAAGTTTACACACTTTCTTTTCTTCCATACAGAGTTTATATACTTTCTGTTTTAATGGAAAGAGTTGGTAGTATGTTAATATTTGTTGGTAGGATGTTGTGGGGTGGCCATAGAACTTTCATCTTCTCTTATTGTTCTAGACATTAACTCCGACCATCAACACAGCTTTATGGCTTGAATTTATATATATACAATTACATTCGTGGTTTAGAGACTGTTTTTTTTTAAGATAAATAAATTATATCCTCTCAAATTTTTTAATTACATTAATATTTTTTTTTATCTTTATACTCTAATGATTTTATCATTTATGTTTATAGTCTTAAAATTAATTATTCAATATTTGTTACAGGATATTAATTCAATTGAAGATCATTTGGATTCCTCCAAGATTTCAATGAAGACCACTCAACCCTCTTAA

Protein sequence

>MS.gene09362.t1

MAEQVQQLNASSSKTKCRKENTTNFISSFIVKSAKTTTFTSFRYSELTSCVHKVRATSPLLCSAQVMACSDEKHDRLSNLSDDLICHICSFLSTKESYRTCVLSKRWESICTKIPNLHFQLPEISDPVMSKEEIKSSQLAFQRRSENIGKLILDSKMGCQPHDVHLWVSKAFVNFALLRRTENIRKLRLDSEKGCQSHDVHMWVSKALDLKVQELDLDLFLHEKVLLPLQLSTCESLVVLKLRGRIQPTLNSSFHVYLPSLKILHLRETVAYSMFDDSKEYALNDFLSGCPHLEELLLHETFALPINTSFHLLKRLFLLLYMPTSIKCCPLQINAPSLEVFHIADLSLTPRKYDFTNLSTLDEAALCICKRPDFNNLYKLLKGLSNVKTLALGSKTFHFLSMEDKLDSLHLLTFHNLLFLTVEISENCSWNMLISFLQNAPKLKDLAIAVGIQCGKFEINSRREEVGNSRWVEPSVTPACLTTSLITFEFKGIQNIKTELDFTRYIVSHSSKLQKVKIFTLSSKKRRVEKSLRKGSKKSSLLVWDINSIEDHLDSSKISMKTTQPS