AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03753

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03753.t1 MTR_4g056040 65.171 468 65 8 1 370 1 468 0.0 550
MS.gene03753.t1 MTR_4g056020 61.098 437 102 8 1 369 1 437 1.12e-170 484
MS.gene03753.t1 MTR_4g055990 56.250 480 100 11 1 370 1 480 2.55e-160 459
MS.gene03753.t1 MTR_4g055990 56.159 479 100 11 1 369 1 479 8.27e-160 458
MS.gene03753.t1 MTR_4g055580 55.391 473 107 9 1 369 92 564 3.83e-148 431
MS.gene03753.t1 MTR_4g056070 55.835 437 85 9 1 329 1 437 5.90e-142 410
MS.gene03753.t1 MTR_4g056030 78.469 209 45 0 161 369 229 437 1.00e-112 337
MS.gene03753.t1 MTR_4g056030 60.714 168 24 2 1 162 1 132 5.77e-55 187
MS.gene03753.t1 MTR_1g038710 67.290 214 68 1 156 369 240 451 8.38e-92 283
MS.gene03753.t1 MTR_1g038710 57.229 166 37 2 1 162 11 146 4.95e-45 160
MS.gene03753.t1 MTR_7g110920 60.345 232 72 3 156 370 93 321 6.79e-86 263
MS.gene03753.t1 MTR_4g056020 84.397 141 22 0 229 369 1 141 1.27e-80 244
MS.gene03753.t1 MTR_1g090883 65.441 136 46 1 144 279 223 357 4.76e-48 167
MS.gene03753.t1 MTR_1g090883 49.091 165 41 3 2 159 12 140 3.77e-36 135
MS.gene03753.t1 MTR_1g090900 50.595 168 38 4 1 159 1 132 4.79e-40 140
MS.gene03753.t1 MTR_4g056010 89.231 65 7 0 98 162 1 65 1.99e-33 120
MS.gene03753.t1 MTR_1g090890 67.391 92 24 2 282 370 29 117 6.74e-33 119
MS.gene03753.t1 MTR_4g093690 35.055 271 101 9 1 200 10 276 3.97e-32 122
MS.gene03753.t1 MTR_1g041245 27.548 363 216 14 9 343 11 354 4.30e-18 85.1
MS.gene03753.t1 MTR_7g056433 26.302 384 205 15 4 343 7 356 4.52e-18 85.1
MS.gene03753.t1 MTR_5g008950 26.494 385 178 15 14 345 4 336 1.88e-17 83.2
MS.gene03753.t1 MTR_7g032380 25.788 349 210 12 9 343 11 324 5.25e-17 81.6
MS.gene03753.t1 MTR_7g098510 27.586 377 195 12 9 343 18 358 3.89e-16 79.3
MS.gene03753.t1 MTR_3g108560 27.005 374 203 15 6 343 17 356 4.18e-16 79.3
MS.gene03753.t1 MTR_7g034115 26.455 378 198 15 9 343 11 351 1.16e-15 78.2
MS.gene03753.t1 MTR_7g033990 25.269 372 210 10 9 343 11 351 3.19e-15 77.0
MS.gene03753.t1 MTR_1g108800 26.000 350 214 8 9 352 8 318 9.73e-14 72.0
MS.gene03753.t1 MTR_7g056277 24.194 372 218 12 9 347 259 599 2.74e-13 71.6
MS.gene03753.t1 MTR_7g034110 24.038 312 188 8 9 312 11 281 2.88e-13 70.5
MS.gene03753.t1 MTR_7g056287 23.577 369 224 11 9 347 3 343 3.17e-12 67.8
MS.gene03753.t1 MTR_7g007370 27.557 352 191 13 5 341 13 315 3.45e-12 67.4
MS.gene03753.t1 MTR_5g073420 23.720 371 218 14 9 347 11 348 7.90e-12 66.6
MS.gene03753.t1 MTR_6g044572 23.590 390 204 14 9 343 2 352 1.37e-11 65.9
MS.gene03753.t1 MTR_3g023630 23.433 367 220 15 9 343 8 345 1.55e-11 65.5
MS.gene03753.t1 MTR_7g098480 25.946 370 208 14 9 343 18 356 1.67e-11 65.9
MS.gene03753.t1 MTR_6g022390 42.424 66 38 0 9 74 5 70 2.03e-11 62.0
MS.gene03753.t1 MTR_2g007100 59.091 44 18 0 9 52 2 45 2.63e-11 59.7
MS.gene03753.t1 MTR_5g039950 27.415 383 212 14 9 343 23 387 2.77e-11 65.1
MS.gene03753.t1 MTR_1g085120 23.618 398 222 14 9 357 92 456 4.34e-11 64.3
MS.gene03753.t1 MTR_1g085120 24.060 399 219 15 9 357 167 531 6.07e-11 64.3
MS.gene03753.t1 MTR_6g044560 23.590 390 204 14 9 343 178 528 6.23e-11 64.3
MS.gene03753.t1 MTR_3g026920 25.130 386 219 17 9 345 19 383 6.60e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03753.t1 AT3G59000 25.588 340 189 10 9 345 2 280 3.69e-17 82.0
MS.gene03753.t1 AT5G38570 24.682 393 235 14 9 365 2 369 6.44e-15 75.9
MS.gene03753.t1 AT4G13960 25.974 385 199 15 9 364 2 329 1.01e-13 72.8
MS.gene03753.t1 AT4G13960 25.974 385 199 15 9 364 2 329 1.01e-13 72.8
MS.gene03753.t1 AT3G59190 28.070 228 137 7 9 232 12 216 2.03e-13 71.2
MS.gene03753.t1 AT3G03030 34.416 154 73 4 9 158 2 131 2.96e-13 70.5
MS.gene03753.t1 AT3G59190 28.070 228 137 7 9 232 12 216 3.41e-13 71.2
MS.gene03753.t1 AT3G03030 34.416 154 73 4 9 158 2 131 9.03e-13 69.7
MS.gene03753.t1 AT5G38392 34.211 152 70 5 9 154 2 129 1.40e-12 67.0
MS.gene03753.t1 AT3G03040 33.113 151 79 2 9 158 2 131 5.35e-12 67.4
MS.gene03753.t1 AT3G59000 34.104 173 89 5 9 177 2 153 6.34e-12 67.0
MS.gene03753.t1 AT3G58820 25.000 324 165 8 9 282 2 297 7.69e-12 66.6
MS.gene03753.t1 AT1G58310 24.727 275 155 8 9 277 8 236 1.87e-11 65.9
MS.gene03753.t1 AT5G41830 32.704 159 83 4 3 156 7 146 2.04e-11 65.5
MS.gene03753.t1 AT5G38386 24.540 326 163 10 9 279 2 299 4.75e-11 64.3
MS.gene03753.t1 AT5G38386 24.540 326 163 10 9 279 2 299 4.75e-11 64.3
MS.gene03753.t1 AT1G50980 24.862 362 227 12 12 363 35 361 5.87e-11 63.9

Find 65 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTACATTTGAATTTAA+AGG 0.124626 4.3:+45111202 MS.gene03753:CDS
ACTTACGTATCTTGCAATTA+AGG 0.212200 4.3:+45110762 MS.gene03753:CDS
AGAAATCCTCCGTACTAGTA+TGG 0.259970 4.3:+45111359 MS.gene03753:CDS
ATTGCAAGATACGTAAGTTT+TGG 0.274598 4.3:-45110757 None:intergenic
GCAGATCGACTCCCATCTTT+TGG 0.302315 4.3:-45109672 None:intergenic
GTTTCCAACCTCCTTTCTTC+GGG 0.367541 4.3:-45111131 None:intergenic
AGTTTCCAACCTCCTTTCTT+CGG 0.370618 4.3:-45111132 None:intergenic
GTAAACAGACTTGATTTGTT+CGG 0.396934 4.3:-45109750 None:intergenic
ACTTTCTAATGTCAAATCAT+TGG 0.410912 4.3:+45110492 MS.gene03753:CDS
ATATGACAAATCAAATCGTC+TGG 0.414750 4.3:-45109602 None:intergenic
AAAGTGAAGGTTGGGAATCT+TGG 0.417455 4.3:-45109696 None:intergenic
TAGAAAGAACTTCAAGTGTC+GGG 0.418139 4.3:-45110348 None:intergenic
ACAGATCCAAGTCAAGTTCC+TGG 0.422138 4.3:-45109976 None:intergenic
AAGAGTAGCTTGATGAAGAT+TGG 0.423816 4.3:-45110419 None:intergenic
TCTTTCCATTTGTCAGAGTC+CGG 0.430288 4.3:+45110438 MS.gene03753:CDS
CAAAATCTTGATAGTGAGAA+AGG 0.438135 4.3:+45109791 MS.gene03753:CDS
GGTAATTGAAAGTGAAGGTT+GGG 0.443422 4.3:-45109704 None:intergenic
CAAGGTCCAGGAACTTGACT+TGG 0.457085 4.3:+45109970 MS.gene03753:CDS
ACCCACATGTGTACATCATT+TGG 0.460055 4.3:-45109929 None:intergenic
AAATTCAAATGTAATGAGAC+TGG 0.466724 4.3:-45111197 None:intergenic
CATGTGTTCTATCCAAAAGA+TGG 0.467948 4.3:+45109660 MS.gene03753:CDS
TGATTTGTTCGGACAACAAA+GGG 0.479160 4.3:-45109739 None:intergenic
TGAAATCAATTCCCGAAGAA+AGG 0.482837 4.3:+45111120 MS.gene03753:CDS
CTAAGGCTCGAGAGTGAGAA+AGG 0.490055 4.3:+45109899 MS.gene03753:CDS
GGCATTAGATCTCAAGGTCC+AGG 0.496808 4.3:+45109958 MS.gene03753:CDS
TGTTCACATGTGGGTTTCAA+AGG 0.497154 4.3:+45109829 MS.gene03753:CDS
AGGAGGTTGGAAACTCTAGC+TGG 0.498435 4.3:+45111140 MS.gene03753:CDS
GAATACAAACTGTTAAAATC+CGG 0.506388 4.3:-45110457 None:intergenic
AAAATCCGGACTCTGACAAA+TGG 0.507415 4.3:-45110443 None:intergenic
AACAAAGGGTCTGAAATCTC+TGG 0.515254 4.3:-45109725 None:intergenic
GAAACTTACATGAAATGTGT+TGG 0.516194 4.3:-45110524 None:intergenic
AGTTTGTATTCACTCTTGAA+AGG 0.523785 4.3:+45110469 MS.gene03753:CDS
TGTACACATGTGGGTTTCAA+AGG 0.528762 4.3:+45109937 MS.gene03753:CDS
GAAATCCTCCGTACTAGTAT+GGG 0.530507 4.3:+45111360 MS.gene03753:CDS
CCGAAAATATAAGAAAACTA+AGG 0.538047 4.3:+45109882 MS.gene03753:CDS
TTCAAAGGCATTAGATCTCA+AGG 0.542872 4.3:+45109952 MS.gene03753:CDS
ATAGAAAGAACTTCAAGTGT+CGG 0.549697 4.3:-45110349 None:intergenic
TGGTAATTGAAAGTGAAGGT+TGG 0.551378 4.3:-45109705 None:intergenic
AATGTCAAATCATTGGCTCT+CGG 0.552626 4.3:+45110499 MS.gene03753:CDS
ATGTGTTCTATCCAAAAGAT+GGG 0.563690 4.3:+45109661 MS.gene03753:CDS
GGTGGAGCCATCAGTGACTC+CGG 0.564226 4.3:+45111162 MS.gene03753:CDS
TGTCATGCAGTTTCTCAGCA+TGG 0.568272 4.3:+45110621 MS.gene03753:intron
ATTTCATACCCATACTAGTA+CGG 0.586903 4.3:-45111368 None:intergenic
ACATGTGTACATCATTTGGC+TGG 0.590853 4.3:-45109925 None:intergenic
AATTCCCGAAGAAAGGAGGT+TGG 0.591474 4.3:+45111127 MS.gene03753:CDS
TCACTCAAATAAGTTAGAGA+AGG 0.596663 4.3:+45111273 MS.gene03753:CDS
AAATATCTGAGAGTTGCAGT+TGG 0.597797 4.3:+45110704 MS.gene03753:CDS
TATGACAAATCAAATCGTCT+GGG 0.606583 4.3:-45109601 None:intergenic
ACCACATGATGTTCACATGT+GGG 0.606890 4.3:+45109820 MS.gene03753:CDS
AGACATGCCGGAGTCACTGA+TGG 0.608044 4.3:-45111169 None:intergenic
GGAGGTTGGAAACTCTAGCT+GGG 0.609970 4.3:+45111141 MS.gene03753:CDS
GCCAAATGATGTACACATGT+GGG 0.612968 4.3:+45109928 MS.gene03753:CDS
TTGATTTGTTCGGACAACAA+AGG 0.614158 4.3:-45109740 None:intergenic
GGAAAGTCTAAGCGGCAACA+AGG 0.615818 4.3:-45110014 None:intergenic
AGACTGGTTATAAGACATGC+CGG 0.617236 4.3:-45111181 None:intergenic
AATCAATTCCCGAAGAAAGG+AGG 0.619715 4.3:+45111123 MS.gene03753:CDS
TCATACCCATACTAGTACGG+AGG 0.632477 4.3:-45111365 None:intergenic
AGAAAGAACTTCAAGTGTCG+GGG 0.643549 4.3:-45110347 None:intergenic
AACCACATGATGTTCACATG+TGG 0.644144 4.3:+45109819 MS.gene03753:CDS
AGCCAAATGATGTACACATG+TGG 0.670458 4.3:+45109927 MS.gene03753:CDS
CATGCAGTTTCTCAGCATGG+AGG 0.688384 4.3:+45110624 MS.gene03753:intron
GGTTGGAAACTCTAGCTGGG+TGG 0.692044 4.3:+45111144 MS.gene03753:CDS
ACCCACATGTGAACATCATG+TGG 0.693828 4.3:-45109821 None:intergenic
TCTCTGGTAATTGAAAGTGA+AGG 0.696256 4.3:-45109709 None:intergenic
TCACAAGTGGAAAGTCTAAG+CGG 0.705410 4.3:-45110022 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGGAAAAAATAAAGAA+AGG - chr4.3:45110294-45110313 None:intergenic 15.0%
!!! TCACAGTTTATTATTTTTAT+CGG + chr4.3:45110678-45110697 MS.gene03753:CDS 15.0%
!!! TTTGTTTTCTTATATATTCT+TGG - chr4.3:45109775-45109794 None:intergenic 15.0%
!! AAAATTCTAACGTTAATGTT+TGG + chr4.3:45111078-45111097 MS.gene03753:intron 20.0%
!! AGTAATAAACATAAAACTGT+AGG - chr4.3:45111010-45111029 None:intergenic 20.0%
!! CTCATTACATTTGAATTTAA+AGG + chr4.3:45111202-45111221 MS.gene03753:CDS 20.0%
!! TTAAGAACAGAATTATATCT+GGG - chr4.3:45110591-45110610 None:intergenic 20.0%
!!! CAAATTTTAGAAAGAGAAAT+AGG - chr4.3:45110310-45110329 None:intergenic 20.0%
!!! CCTTAGTTTTCTTATATTTT+CGG - chr4.3:45109885-45109904 None:intergenic 20.0%
! AAATTCAAATGTAATGAGAC+TGG - chr4.3:45111200-45111219 None:intergenic 25.0%
! AAGAATATATCACAGTTGAT+CGG - chr4.3:45110141-45110160 None:intergenic 25.0%
! AATATGATAAGCTCAAAATC+TGG + chr4.3:45110839-45110858 MS.gene03753:intron 25.0%
! ACTTTCTAATGTCAAATCAT+TGG + chr4.3:45110492-45110511 MS.gene03753:CDS 25.0%
! AGCTTAAAAGAAGGTTAAAT+TGG - chr4.3:45110981-45111000 None:intergenic 25.0%
! CCGAAAATATAAGAAAACTA+AGG + chr4.3:45109882-45109901 MS.gene03753:CDS 25.0%
! CTATTTACTATATATCCAGT+TGG + chr4.3:45111047-45111066 MS.gene03753:intron 25.0%
! CTTAAGAACAGAATTATATC+TGG - chr4.3:45110592-45110611 None:intergenic 25.0%
! GAATACAAACTGTTAAAATC+CGG - chr4.3:45110460-45110479 None:intergenic 25.0%
! TAAAAGAAGGTTAAATTGGT+AGG - chr4.3:45110977-45110996 None:intergenic 25.0%
!! ACTCTTCTTTTCTTTAAACT+GGG - chr4.3:45111313-45111332 None:intergenic 25.0%
!! GATCTCAATAATTTTCTATC+TGG + chr4.3:45110184-45110203 MS.gene03753:intron 25.0%
!! TACTCTTCTTTTCTTTAAAC+TGG - chr4.3:45111314-45111333 None:intergenic 25.0%
!! TTTGCAAACTCATATTTTCT+AGG - chr4.3:45110394-45110413 None:intergenic 25.0%
ACTTACGTATCTTGCAATTA+AGG + chr4.3:45110762-45110781 MS.gene03753:CDS 30.0%
AGATGAAGAATCTTTAGTGA+CGG - chr4.3:45110118-45110137 None:intergenic 30.0%
AGGTAAAACAGCTTAAAAGA+AGG - chr4.3:45110990-45111009 None:intergenic 30.0%
AGTTTGTATTCACTCTTGAA+AGG + chr4.3:45110469-45110488 MS.gene03753:CDS 30.0%
ATAGAAAGAACTTCAAGTGT+CGG - chr4.3:45110352-45110371 None:intergenic 30.0%
ATATGACAAATCAAATCGTC+TGG - chr4.3:45109605-45109624 None:intergenic 30.0%
ATGTGTTCTATCCAAAAGAT+GGG + chr4.3:45109661-45109680 MS.gene03753:CDS 30.0%
GAAACTTACATGAAATGTGT+TGG - chr4.3:45110527-45110546 None:intergenic 30.0%
TATATATCCAGTTGGAAAGT+TGG + chr4.3:45111055-45111074 MS.gene03753:intron 30.0%
TATATCTGGGTGACAAAATA+TGG - chr4.3:45110578-45110597 None:intergenic 30.0%
TATGACAAATCAAATCGTCT+GGG - chr4.3:45109604-45109623 None:intergenic 30.0%
TCAAGACATAAAAACTGAGT+TGG + chr4.3:45111228-45111247 MS.gene03753:CDS 30.0%
TCACTCAAATAAGTTAGAGA+AGG + chr4.3:45111273-45111292 MS.gene03753:CDS 30.0%
TGAAAAGAAGAATTGAGTGT+TGG - chr4.3:45110085-45110104 None:intergenic 30.0%
! ATTGCAAGATACGTAAGTTT+TGG - chr4.3:45110760-45110779 None:intergenic 30.0%
!! CAAAATCTTGATAGTGAGAA+AGG + chr4.3:45109791-45109810 MS.gene03753:CDS 30.0%
!! GTAAACAGACTTGATTTGTT+CGG - chr4.3:45109753-45109772 None:intergenic 30.0%
AAATAAAGTTCCTCCAGATG+TGG - chr4.3:45110214-45110233 None:intergenic 35.0%
AAATATCTGAGAGTTGCAGT+TGG + chr4.3:45110704-45110723 MS.gene03753:CDS 35.0%
AAGAGTAGCTTGATGAAGAT+TGG - chr4.3:45110422-45110441 None:intergenic 35.0%
AGTAGAAAAAAGCTTACGCA+AGG + chr4.3:45111330-45111349 MS.gene03753:CDS 35.0%
CATGTGTTCTATCCAAAAGA+TGG + chr4.3:45109660-45109679 MS.gene03753:CDS 35.0%
GGTAATTGAAAGTGAAGGTT+GGG - chr4.3:45109707-45109726 None:intergenic 35.0%
GTAGAAAAAAGCTTACGCAA+GGG + chr4.3:45111331-45111350 MS.gene03753:CDS 35.0%
TAGAAAAAAGCTTACGCAAG+GGG + chr4.3:45111332-45111351 MS.gene03753:CDS 35.0%
TAGAAAGAACTTCAAGTGTC+GGG - chr4.3:45110351-45110370 None:intergenic 35.0%
TCTCTGGTAATTGAAAGTGA+AGG - chr4.3:45109712-45109731 None:intergenic 35.0%
TCTCTTCAAGAAGTGAAAAG+AGG - chr4.3:45110266-45110285 None:intergenic 35.0%
TGAAATCAATTCCCGAAGAA+AGG + chr4.3:45111120-45111139 MS.gene03753:CDS 35.0%
TGGTAATTGAAAGTGAAGGT+TGG - chr4.3:45109708-45109727 None:intergenic 35.0%
! ACTTGTGGTCTTAAAATTGC+GGG + chr4.3:45110048-45110067 MS.gene03753:intron 35.0%
! CACTTGTGGTCTTAAAATTG+CGG + chr4.3:45110047-45110066 MS.gene03753:intron 35.0%
! GAATTTTCCAACTTTCCAAC+TGG - chr4.3:45111065-45111084 None:intergenic 35.0%
!! AATGTCAAATCATTGGCTCT+CGG + chr4.3:45110499-45110518 MS.gene03753:CDS 35.0%
!! GAAGTGAAAAGAGGTATTGA+TGG - chr4.3:45110257-45110276 None:intergenic 35.0%
!! TGATTTGTTCGGACAACAAA+GGG - chr4.3:45109742-45109761 None:intergenic 35.0%
!! TTCAAAGGCATTAGATCTCA+AGG + chr4.3:45109952-45109971 MS.gene03753:CDS 35.0%
!! TTGATTTGTTCGGACAACAA+AGG - chr4.3:45109743-45109762 None:intergenic 35.0%
AAAATCCGGACTCTGACAAA+TGG - chr4.3:45110446-45110465 None:intergenic 40.0%
AAAGTGAAGGTTGGGAATCT+TGG - chr4.3:45109699-45109718 None:intergenic 40.0%
AACCACATGATGTTCACATG+TGG + chr4.3:45109819-45109838 MS.gene03753:CDS 40.0%
AATCAATTCCCGAAGAAAGG+AGG + chr4.3:45111123-45111142 MS.gene03753:CDS 40.0%
ACATGTGTACATCATTTGGC+TGG - chr4.3:45109928-45109947 None:intergenic 40.0%
ACCACATGATGTTCACATGT+GGG + chr4.3:45109820-45109839 MS.gene03753:CDS 40.0%
ACCCACATGTGTACATCATT+TGG - chr4.3:45109932-45109951 None:intergenic 40.0%
AGAAATCCTCCGTACTAGTA+TGG + chr4.3:45111359-45111378 MS.gene03753:CDS 40.0%
AGCCAAATGATGTACACATG+TGG + chr4.3:45109927-45109946 MS.gene03753:CDS 40.0%
AGTTTCCAACCTCCTTTCTT+CGG - chr4.3:45111135-45111154 None:intergenic 40.0%
GAAATCCTCCGTACTAGTAT+GGG + chr4.3:45111360-45111379 MS.gene03753:CDS 40.0%
GCCAAATGATGTACACATGT+GGG + chr4.3:45109928-45109947 MS.gene03753:CDS 40.0%
TCACAAGTGGAAAGTCTAAG+CGG - chr4.3:45110025-45110044 None:intergenic 40.0%
TCTTTCCATTTGTCAGAGTC+CGG + chr4.3:45110438-45110457 MS.gene03753:CDS 40.0%
TGTACACATGTGGGTTTCAA+AGG + chr4.3:45109937-45109956 MS.gene03753:CDS 40.0%
TGTTCACATGTGGGTTTCAA+AGG + chr4.3:45109829-45109848 MS.gene03753:CDS 40.0%
! AACAAAGGGTCTGAAATCTC+TGG - chr4.3:45109728-45109747 None:intergenic 40.0%
! AGAAAGAACTTCAAGTGTCG+GGG - chr4.3:45110350-45110369 None:intergenic 40.0%
! AGACTGGTTATAAGACATGC+CGG - chr4.3:45111184-45111203 None:intergenic 40.0%
! CTTGTGGTCTTAAAATTGCG+GGG + chr4.3:45110049-45110068 MS.gene03753:intron 40.0%
! GTCGGGGTATTAATTTCTAC+TGG - chr4.3:45110334-45110353 None:intergenic 40.0%
!! GGTATTGATGGCTATTCGAA+AGG - chr4.3:45110245-45110264 None:intergenic 40.0%
AATTCCCGAAGAAAGGAGGT+TGG + chr4.3:45111127-45111146 MS.gene03753:CDS 45.0%
ACAGATCCAAGTCAAGTTCC+TGG - chr4.3:45109979-45109998 None:intergenic 45.0%
ACCCACATGTGAACATCATG+TGG - chr4.3:45109824-45109843 None:intergenic 45.0%
GCACAAGAAGAGCAAAGACT+TGG + chr4.3:45110861-45110880 MS.gene03753:intron 45.0%
GTTTCCAACCTCCTTTCTTC+GGG - chr4.3:45111134-45111153 None:intergenic 45.0%
TCATACCCATACTAGTACGG+AGG - chr4.3:45111368-45111387 None:intergenic 45.0%
TCTATCTGGTTGTCCACATC+TGG + chr4.3:45110198-45110217 MS.gene03753:intron 45.0%
TGTCATGCAGTTTCTCAGCA+TGG + chr4.3:45110621-45110640 MS.gene03753:intron 45.0%
TTCCACTTGTGAGTCACTTG+TGG + chr4.3:45110033-45110052 MS.gene03753:intron 45.0%
!!! GCGGCAACAAGGTTTTTTCA+TGG - chr4.3:45110006-45110025 None:intergenic 45.0%
AGGAGGTTGGAAACTCTAGC+TGG + chr4.3:45111140-45111159 MS.gene03753:CDS 50.0%
ATCTGGTTGTCCACATCTGG+AGG + chr4.3:45110201-45110220 MS.gene03753:intron 50.0%
CAAGGTCCAGGAACTTGACT+TGG + chr4.3:45109970-45109989 MS.gene03753:CDS 50.0%
CATGCAGTTTCTCAGCATGG+AGG + chr4.3:45110624-45110643 MS.gene03753:intron 50.0%
CTAAGGCTCGAGAGTGAGAA+AGG + chr4.3:45109899-45109918 MS.gene03753:CDS 50.0%
GACCACAAGTGACTCACAAG+TGG - chr4.3:45110038-45110057 None:intergenic 50.0%
GGAAAGTCTAAGCGGCAACA+AGG - chr4.3:45110017-45110036 None:intergenic 50.0%
GGAGGTTGGAAACTCTAGCT+GGG + chr4.3:45111141-45111160 MS.gene03753:CDS 50.0%
GGCATTAGATCTCAAGGTCC+AGG + chr4.3:45109958-45109977 MS.gene03753:CDS 50.0%
!! GCAGATCGACTCCCATCTTT+TGG - chr4.3:45109675-45109694 None:intergenic 50.0%
AGACATGCCGGAGTCACTGA+TGG - chr4.3:45111172-45111191 None:intergenic 55.0%
GGTTGGAAACTCTAGCTGGG+TGG + chr4.3:45111144-45111163 MS.gene03753:CDS 55.0%
GGTGGAGCCATCAGTGACTC+CGG + chr4.3:45111162-45111181 MS.gene03753:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 45109560 45111387 45109560 ID=MS.gene03753
chr4.3 mRNA 45109560 45111387 45109560 ID=MS.gene03753.t1;Parent=MS.gene03753
chr4.3 exon 45109560 45110040 45109560 ID=MS.gene03753.t1.exon1;Parent=MS.gene03753.t1
chr4.3 CDS 45109560 45110040 45109560 ID=cds.MS.gene03753.t1;Parent=MS.gene03753.t1
chr4.3 exon 45110335 45110537 45110335 ID=MS.gene03753.t1.exon2;Parent=MS.gene03753.t1
chr4.3 CDS 45110335 45110537 45110335 ID=cds.MS.gene03753.t1;Parent=MS.gene03753.t1
chr4.3 exon 45110631 45110783 45110631 ID=MS.gene03753.t1.exon3;Parent=MS.gene03753.t1
chr4.3 CDS 45110631 45110783 45110631 ID=cds.MS.gene03753.t1;Parent=MS.gene03753.t1
chr4.3 exon 45111112 45111387 45111112 ID=MS.gene03753.t1.exon4;Parent=MS.gene03753.t1
chr4.3 CDS 45111112 45111387 45111112 ID=cds.MS.gene03753.t1;Parent=MS.gene03753.t1
Gene Sequence

>MS.gene03753

ATGGCGTGCTCTGATGAAGAACACGATCGATCAAGCAATCTCCCAGACGATTTGATTTGTCATATTTTGTCTTTCATATCAACAAAAGAGTCTTATAGAACATGTGTTCTATCCAAAAGATGGGAGTCGATCTGCACCAAGATTCCCAACCTTCACTTTCAATTACCAGAGATTTCAGACCCTTTGTTGTCCGAACAAATCAAGTCTGTTTACCAAGAATATATAAGAAAACAAAATCTTGATAGTGAGAAAGGTTGCGAACCACATGATGTTCACATGTGGGTTTCAAAGGCATTTGTAAATTTTGCTCTGCTAAGACGCACCGAAAATATAAGAAAACTAAGGCTCGAGAGTGAGAAAGGCTGCCAGCCAAATGATGTACACATGTGGGTTTCAAAGGCATTAGATCTCAAGGTCCAGGAACTTGACTTGGATCTGTTTCTCCATGAAAAAACCTTGTTGCCGCTTAGACTTTCCACTTGTGAGTCACTTGTGGTCTTAAAATTGCGGGGCAGAATTCAACCAACACTCAATTCTTCTTTTCATGTATATTTACCGTCACTAAAGATTCTTCATCTCCGATCAACTGTGATATATTCTTTCTTTGATGATCAAAAAGAGTATGATCTCAATAATTTTCTATCTGGTTGTCCACATCTGGAGGAACTTTATTTAAATGAGACCTTTCGAATAGCCATCAATACCTCTTTTCACTTCTTGAAGAGATTATACCTTTCTTTATTTTTTCCTATTTCTCTTTCTAAAATTTGTCCAGTAGAAATTAATACCCCGACACTTGAAGTTCTTTCTATTATTGATTTGTCATTGACTCCTAGAAAATATGAGTTTGCAAACTTGTCCAATCTTCATCAAGCTACTCTTTCCATTTGTCAGAGTCCGGATTTTAACAGTTTGTATTCACTCTTGAAAGGACTTTCTAATGTCAAATCATTGGCTCTCGGTTCCAACACATTTCATGTAAGTTTCATAATCTCTTCTTTTTTAATTACAAGTTCCATATTTTGTCACCCAGATATAATTCTGTTCTTAAGTTATTATTTTGTCATGCAGTTTCTCAGCATGGAGGACAAACTTGACAACTTACATCTTCTCACTTTTCACAGTTTATTATTTTTATCGGTTGAAATATCTGAGAGTTGCAGTTGGAATATGCTCGTCAGCTTTCTGCAGAATGCTCCAAAACTTACGTATCTTGCAATTAAGGTGTGTATGATGTTTTTTTTTAACTATATTTGCACAATATATTTTTAAAAGATAAAATATGATAAGCTCAAAATCTGGCACAAGAAGAGCAAAGACTTGGCAAAAGATACATGTAGTTTGCAAATATAAACGATAAACAAATTAATTAATTCAAAACAATAAATATCTGATCTATATTTGTGTAGATTTTCCTACCAATTTAACCTTCTTTTAAGCTGTTTTACCTACAGTTTTATGTTTATTACTTGATAATATAATTGAAACTATTTACTATATATCCAGTTGGAAAGTTGGAAAATTCTAACGTTAATGTTTGGTTTACATGCAGAGAAAACTTGAAATCAATTCCCGAAGAAAGGAGGTTGGAAACTCTAGCTGGGTGGAGCCATCAGTGACTCCGGCATGTCTTATAACCAGTCTCATTACATTTGAATTTAAAGGAATTCAAGACATAAAAACTGAGTTGGACTTTACGCGTTATATTGTAAGTCACTCAAATAAGTTAGAGAAGGTAAAGATTTTCACACCCAGTTTAAAGAAAAGAAGAGTAGAAAAAAGCTTACGCAAGGGGTCAAAGAAATCCTCCGTACTAGTATGGGTATGA
Protein sequence

>MS.gene03753.t1

MACSDEEHDRSSNLPDDLICHILSFISTKESYRTCVLSKRWESICTKIPNLHFQLPEISDPLLSEQIKSVYQEYIRKQNLDSEKGCEPHDVHMWVSKAFVNFALLRRTENIRKLRLESEKGCQPNDVHMWVSKALDLKVQELDLDLFLHEKTLLPLRLSTLEINTPTLEVLSIIDLSLTPRKYEFANLSNLHQATLSICQSPDFNSLYSLLKGLSNVKSLALGSNTFHFLSMEDKLDNLHLLTFHSLLFLSVEISESCSWNMLVSFLQNAPKLTYLAIKRKLEINSRRKEVGNSSWVEPSVTPACLITSLITFEFKGIQDIKTELDFTRYIVSHSNKLEKVKIFTPSLKKRRVEKSLRKGSKKSSVLVWV