AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09364


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09364.t1 MTR_4g056030 81.034 464 50 1 1 426 1 464 0.0 732
MS.gene09364.t1 MTR_4g056020 77.111 450 65 1 1 412 1 450 0.0 676
MS.gene09364.t1 MTR_4g055990 70.325 492 66 4 1 412 1 492 0.0 636
MS.gene09364.t1 MTR_4g055990 75.964 441 64 3 1 399 1 441 0.0 632
MS.gene09364.t1 MTR_4g055580 72.279 487 59 4 1 412 92 577 0.0 632
MS.gene09364.t1 MTR_4g056040 74.825 429 78 1 1 399 1 429 0.0 624
MS.gene09364.t1 MTR_4g056070 73.913 437 74 1 1 397 1 437 0.0 624
MS.gene09364.t1 MTR_1g038710 66.589 431 128 4 1 425 11 431 0.0 527
MS.gene09364.t1 MTR_1g090883 64.023 353 123 3 2 352 12 362 2.54e-142 411
MS.gene09364.t1 MTR_7g110920 52.601 346 100 5 99 425 1 301 2.22e-105 315
MS.gene09364.t1 MTR_4g093690 56.250 272 110 6 1 268 10 276 3.05e-83 256
MS.gene09364.t1 MTR_1g090900 68.362 177 53 2 1 174 1 177 1.51e-70 221
MS.gene09364.t1 MTR_4g056020 64.935 154 16 1 297 412 1 154 5.01e-59 190
MS.gene09364.t1 MTR_4g056010 84.848 99 15 0 69 167 2 100 2.09e-51 168
MS.gene09364.t1 MTR_5g084070 32.759 406 230 17 5 399 9 382 1.79e-31 125
MS.gene09364.t1 MTR_5g080710 30.695 417 230 16 5 399 29 408 1.15e-28 117
MS.gene09364.t1 MTR_8g445780 29.340 409 240 13 7 396 11 389 4.07e-27 112
MS.gene09364.t1 MTR_7g056433 29.584 409 212 18 4 403 7 348 1.45e-26 110
MS.gene09364.t1 MTR_1g041245 29.803 406 204 15 9 403 11 346 1.67e-25 107
MS.gene09364.t1 MTR_4g032730 29.978 457 237 21 9 414 15 439 2.13e-24 105
MS.gene09364.t1 MTR_3g108560 30.198 404 204 16 6 403 17 348 4.24e-24 103
MS.gene09364.t1 MTR_8g467800 30.476 420 253 15 5 404 16 416 1.24e-23 102
MS.gene09364.t1 MTR_0543s0010 29.000 400 203 16 9 403 86 409 1.52e-23 102
MS.gene09364.t1 MTR_0492s0020 29.000 400 203 16 9 403 86 409 1.68e-23 102
MS.gene09364.t1 MTR_8g468810 29.665 418 251 17 4 399 20 416 5.80e-23 100
MS.gene09364.t1 MTR_8g062270 30.166 421 240 20 9 399 16 412 2.98e-22 99.0
MS.gene09364.t1 MTR_3g107100 28.954 411 211 17 5 403 7 348 1.10e-21 96.7
MS.gene09364.t1 MTR_8g014260 27.660 423 248 14 6 399 13 406 1.14e-21 97.1
MS.gene09364.t1 MTR_2g083840 29.187 418 251 17 9 404 21 415 2.87e-21 95.9
MS.gene09364.t1 MTR_7g007080 28.436 422 199 21 7 403 2 345 3.61e-21 95.1
MS.gene09364.t1 MTR_8g468840 28.235 425 253 17 8 404 13 413 2.52e-20 93.2
MS.gene09364.t1 MTR_8g468810 31.268 339 196 15 4 320 20 343 4.67e-20 91.7
MS.gene09364.t1 MTR_7g033990 26.764 411 207 16 9 403 11 343 6.39e-20 91.7
MS.gene09364.t1 MTR_6g045333 27.536 414 212 17 9 403 61 405 6.69e-20 91.7
MS.gene09364.t1 MTR_8g058970 27.703 444 256 17 4 404 14 435 9.01e-20 91.7
MS.gene09364.t1 MTR_8g468810 32.013 303 173 13 4 288 20 307 9.68e-20 89.7
MS.gene09364.t1 MTR_8g468810 32.013 303 173 13 4 288 20 307 1.06e-19 90.1
MS.gene09364.t1 MTR_8g468810 31.908 304 174 13 4 289 20 308 1.47e-19 89.7
MS.gene09364.t1 MTR_3g107160 26.634 413 225 15 2 403 3 348 5.75e-19 88.6
MS.gene09364.t1 MTR_7g033915 26.667 405 197 13 9 403 11 325 6.83e-19 88.2
MS.gene09364.t1 MTR_8g467800 32.131 305 179 10 5 294 16 307 8.92e-19 87.4
MS.gene09364.t1 MTR_8g014160 28.058 417 212 16 2 399 34 381 1.36e-18 87.8
MS.gene09364.t1 MTR_3g107120 28.369 423 216 15 1 403 1 356 2.34e-18 87.0
MS.gene09364.t1 MTR_2g007500 27.750 400 191 17 9 388 14 335 6.09e-18 84.7
MS.gene09364.t1 MTR_8g062310 33.803 213 116 9 9 213 25 220 7.95e-18 85.5
MS.gene09364.t1 MTR_3g108150 28.536 403 211 17 9 403 13 346 1.48e-17 84.3
MS.gene09364.t1 MTR_1g053025 26.392 413 225 16 9 403 2 353 2.72e-17 83.6
MS.gene09364.t1 MTR_3g108560 37.037 189 105 7 6 193 17 192 4.85e-17 82.0
MS.gene09364.t1 MTR_7g098570 36.649 191 104 7 9 193 20 199 7.59e-17 82.8
MS.gene09364.t1 MTR_2g007400 27.830 424 201 21 9 399 12 363 1.02e-16 82.0
MS.gene09364.t1 MTR_4g050250 34.615 208 111 9 9 193 21 226 4.61e-16 80.1
MS.gene09364.t1 MTR_1g090890 62.264 53 17 1 350 399 29 81 5.35e-16 74.3
MS.gene09364.t1 MTR_7g056447 36.323 223 116 11 1 209 1 211 8.58e-16 77.8
MS.gene09364.t1 MTR_2g036470 27.053 414 211 21 9 403 14 355 8.87e-16 79.0
MS.gene09364.t1 MTR_7g056287 25.245 408 213 15 9 403 3 331 2.19e-15 77.8
MS.gene09364.t1 MTR_8g062080 33.171 205 115 7 1 193 15 209 2.38e-15 78.2
MS.gene09364.t1 MTR_2g007450 24.480 433 241 17 1 403 8 384 2.53e-15 77.8
MS.gene09364.t1 MTR_3g082890 27.027 407 226 15 6 399 94 442 2.75e-15 78.2
MS.gene09364.t1 MTR_7g098510 34.197 193 106 6 9 193 18 197 3.13e-15 77.4
MS.gene09364.t1 MTR_8g062010 34.653 202 110 8 1 191 1 191 3.29e-15 77.4
MS.gene09364.t1 MTR_6g011460 27.228 404 213 15 9 403 46 377 3.43e-15 77.4
MS.gene09364.t1 MTR_3g048290 27.725 422 258 15 5 399 19 420 3.55e-15 77.8
MS.gene09364.t1 MTR_7g032380 32.804 189 115 6 9 193 11 191 3.58e-15 77.0
MS.gene09364.t1 MTR_5g045510 35.897 195 100 12 9 193 12 191 3.83e-15 77.0
MS.gene09364.t1 MTR_7g007340 27.586 406 178 15 4 393 8 313 4.34e-15 76.6
MS.gene09364.t1 MTR_5g007410 24.694 409 223 17 11 403 28 367 4.70e-15 77.0
MS.gene09364.t1 MTR_3g109982 27.212 452 248 16 6 403 10 434 4.95e-15 77.8
MS.gene09364.t1 MTR_3g036250 26.161 409 202 15 6 399 2 325 6.24e-15 76.3
MS.gene09364.t1 MTR_7g034115 34.343 198 110 8 9 198 11 196 6.46e-15 76.3
MS.gene09364.t1 MTR_4g039440 26.980 404 217 19 9 403 34 368 7.95e-15 76.3
MS.gene09364.t1 MTR_7g115270 34.010 197 110 8 9 193 12 200 8.82e-15 75.9
MS.gene09364.t1 MTR_7g056277 25.061 407 215 15 9 403 259 587 9.42e-15 76.6
MS.gene09364.t1 MTR_3g071850 25.369 406 231 12 9 403 24 368 1.13e-14 76.6
MS.gene09364.t1 MTR_5g039950 27.822 381 215 15 9 378 23 354 1.84e-14 75.1
MS.gene09364.t1 MTR_1g108820 26.521 411 212 18 9 403 8 344 1.99e-14 74.7
MS.gene09364.t1 MTR_2g091145 27.014 422 239 17 5 399 17 396 2.29e-14 75.1
MS.gene09364.t1 MTR_1g013560 30.918 207 122 5 1 195 11 208 3.33e-14 73.9
MS.gene09364.t1 MTR_8g085430 32.178 202 106 6 9 193 11 198 4.53e-14 73.2
MS.gene09364.t1 MTR_7g021630 28.150 373 196 19 6 342 14 350 5.74e-14 73.2
MS.gene09364.t1 MTR_1g013560 30.918 207 122 5 1 195 11 208 6.41e-14 73.6
MS.gene09364.t1 MTR_8g070950 34.010 197 110 8 6 193 12 197 7.39e-14 73.6
MS.gene09364.t1 MTR_7g021630 28.150 373 196 19 6 342 14 350 7.57e-14 72.8
MS.gene09364.t1 MTR_7g060470 25.672 409 230 16 9 403 3 351 1.28e-13 72.4
MS.gene09364.t1 MTR_7g034110 28.431 204 106 5 9 193 11 193 1.30e-13 72.0
MS.gene09364.t1 MTR_3g023630 25.183 409 213 17 9 403 8 337 1.75e-13 72.0
MS.gene09364.t1 MTR_7g055943 26.794 418 218 19 3 403 34 380 2.55e-13 71.6
MS.gene09364.t1 MTR_2g094750 25.917 409 221 18 11 361 92 476 3.57e-13 71.6
MS.gene09364.t1 MTR_8g468760 30.717 293 163 13 1 270 1 276 3.59e-13 71.2
MS.gene09364.t1 MTR_1g085120 25.185 405 219 18 9 399 92 426 4.04e-13 71.2
MS.gene09364.t1 MTR_0009s0080 25.799 407 221 17 11 403 20 359 4.11e-13 71.2
MS.gene09364.t1 MTR_1g085120 25.185 405 219 18 9 399 167 501 5.65e-13 70.9
MS.gene09364.t1 MTR_1g115245 31.953 169 105 3 4 164 21 187 5.79e-13 69.7
MS.gene09364.t1 MTR_1g108820 34.518 197 97 10 9 193 8 184 6.74e-13 70.1
MS.gene09364.t1 MTR_2g008320 26.355 406 214 16 9 399 52 387 7.53e-13 70.5
MS.gene09364.t1 MTR_2g005990 32.547 212 107 10 9 197 6 204 8.01e-13 70.1
MS.gene09364.t1 MTR_7g026500 26.923 416 212 20 8 403 13 356 9.80e-13 69.7
MS.gene09364.t1 MTR_5g008920 25.635 394 209 14 16 399 19 338 1.18e-12 69.3
MS.gene09364.t1 MTR_5g092960 27.828 442 246 21 5 404 15 425 1.56e-12 69.3
MS.gene09364.t1 MTR_3g087260 28.009 432 247 17 9 403 12 416 1.62e-12 69.3
MS.gene09364.t1 MTR_1g066830 31.771 192 113 8 9 193 8 188 1.67e-12 68.9
MS.gene09364.t1 MTR_5g040850 26.190 420 241 14 4 399 2 376 2.00e-12 68.9
MS.gene09364.t1 MTR_5g045170 29.245 212 89 7 11 193 16 195 2.21e-12 68.6
MS.gene09364.t1 MTR_6g022360 32.323 198 104 7 3 193 37 211 2.25e-12 68.6
MS.gene09364.t1 MTR_7g033945 35.294 170 92 6 9 166 11 174 2.68e-12 65.5
MS.gene09364.t1 MTR_4g080773 27.294 425 254 19 9 399 19 422 3.25e-12 68.6
MS.gene09364.t1 MTR_4g080773 27.294 425 254 19 9 399 19 422 3.60e-12 68.6
MS.gene09364.t1 MTR_1g085120 32.124 193 112 9 9 193 179 360 4.05e-12 68.2
MS.gene09364.t1 MTR_5g061680 32.836 201 109 8 9 197 11 197 4.25e-12 67.4
MS.gene09364.t1 MTR_2g047858 34.123 211 112 8 5 200 111 309 7.13e-12 67.4
MS.gene09364.t1 MTR_4g047950 28.846 312 186 14 5 298 9 302 7.28e-12 67.0
MS.gene09364.t1 MTR_4g050930 28.739 341 193 14 7 322 27 342 8.20e-12 67.0
MS.gene09364.t1 MTR_8g467790 34.634 205 99 10 9 193 148 337 8.40e-12 67.4
MS.gene09364.t1 MTR_8g077460 31.925 213 118 6 4 198 5 208 9.14e-12 66.6
MS.gene09364.t1 MTR_1g021820 36.691 139 79 4 4 134 23 160 9.41e-12 67.0
MS.gene09364.t1 MTR_4g050930 28.739 341 193 14 7 322 27 342 1.24e-11 66.6
MS.gene09364.t1 MTR_8g017280 31.338 284 169 12 8 278 35 305 2.22e-11 65.9
MS.gene09364.t1 MTR_5g021550 34.667 150 79 5 5 137 15 162 2.32e-11 62.4
MS.gene09364.t1 MTR_3g040700 29.843 191 120 6 9 193 43 225 2.48e-11 65.5
MS.gene09364.t1 MTR_2g047848 24.533 428 245 16 4 399 2 383 3.31e-11 65.1
MS.gene09364.t1 MTR_7g110910 81.579 38 7 0 1 38 158 195 4.89e-11 62.4
MS.gene09364.t1 MTR_3g082890 24.887 442 228 15 6 399 14 399 6.87e-11 64.3
MS.gene09364.t1 MTR_7g075820 31.050 219 117 9 9 201 6 216 7.59e-11 63.9
MS.gene09364.t1 MTR_1g014450 22.883 437 245 14 4 403 11 392 8.19e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09364.t1 AT4G00315 29.882 425 242 18 9 403 2 400 3.53e-29 119
MS.gene09364.t1 AT4G14103 30.871 379 211 14 8 356 7 364 8.71e-29 116
MS.gene09364.t1 AT4G14103 30.871 379 211 14 8 356 7 364 8.71e-29 116
MS.gene09364.t1 AT4G14103 31.081 370 204 14 8 347 7 355 3.31e-28 115
MS.gene09364.t1 AT4G10400 29.187 418 260 12 9 421 2 388 4.68e-28 115
MS.gene09364.t1 AT4G10400 29.187 418 260 12 9 421 2 388 4.68e-28 115
MS.gene09364.t1 AT4G10400 29.187 418 260 12 9 421 2 388 4.68e-28 115
MS.gene09364.t1 AT1G55660 28.806 427 244 21 9 403 53 451 2.82e-26 110
MS.gene09364.t1 AT4G14096 30.376 372 203 14 8 350 7 351 3.79e-26 110
MS.gene09364.t1 AT4G14096 30.376 372 203 14 8 350 7 351 3.79e-26 110
MS.gene09364.t1 AT3G59190 30.667 375 208 14 9 347 12 370 1.83e-25 107
MS.gene09364.t1 AT3G59190 30.585 376 209 14 9 348 12 371 2.90e-25 108
MS.gene09364.t1 AT3G50710 28.505 428 259 14 9 418 2 400 3.62e-25 107
MS.gene09364.t1 AT5G60610 29.630 405 239 16 9 399 2 374 7.34e-25 105
MS.gene09364.t1 AT5G60610 29.630 405 239 16 9 399 2 374 7.34e-25 105
MS.gene09364.t1 AT4G22280 31.496 381 210 13 9 368 2 352 7.61e-25 105
MS.gene09364.t1 AT5G41830 26.293 464 271 16 3 417 7 448 3.66e-24 105
MS.gene09364.t1 AT1G51370 29.024 410 248 14 7 403 17 396 1.05e-23 103
MS.gene09364.t1 AT3G03030 28.191 376 221 10 9 348 2 364 1.13e-23 103
MS.gene09364.t1 AT2G26860 30.100 402 251 14 9 399 2 384 1.29e-23 102
MS.gene09364.t1 AT2G26860 30.100 402 251 14 9 399 2 384 1.29e-23 102
MS.gene09364.t1 AT4G22280 31.944 360 194 13 9 347 2 331 1.37e-23 101
MS.gene09364.t1 AT5G38396 30.159 378 206 13 9 348 2 359 1.57e-23 102
MS.gene09364.t1 AT4G26340 27.500 400 263 13 9 403 2 379 1.63e-23 102
MS.gene09364.t1 AT4G00320 28.141 398 230 13 3 361 7 387 3.55e-23 102
MS.gene09364.t1 AT5G56380 27.512 418 250 14 9 399 2 393 1.78e-22 99.4
MS.gene09364.t1 AT5G56380 27.512 418 250 14 9 399 2 393 1.78e-22 99.4
MS.gene09364.t1 AT1G55660 30.547 311 166 14 9 290 53 342 2.30e-22 98.2
MS.gene09364.t1 AT5G56440 27.650 434 253 15 9 415 2 401 4.69e-22 98.2
MS.gene09364.t1 AT5G41840 28.682 387 215 12 9 348 14 386 6.72e-22 98.6
MS.gene09364.t1 AT3G59250 27.805 410 236 13 9 405 7 369 7.29e-22 97.4
MS.gene09364.t1 AT1G51370 29.167 384 230 13 7 378 17 370 1.01e-21 97.1
MS.gene09364.t1 AT1G78760 30.713 407 219 21 7 387 14 383 2.89e-21 95.9
MS.gene09364.t1 AT3G58860 28.571 357 218 11 6 344 4 341 3.21e-21 95.9
MS.gene09364.t1 AT3G59160 25.481 416 223 14 9 360 13 405 3.25e-21 95.9
MS.gene09364.t1 AT5G38590 27.820 399 251 12 9 399 2 371 7.46e-21 94.4
MS.gene09364.t1 AT3G59170 29.639 415 226 13 9 368 7 410 1.32e-20 94.4
MS.gene09364.t1 AT5G22700 29.128 436 228 21 9 404 6 400 2.09e-20 93.2
MS.gene09364.t1 AT5G22700 29.128 436 228 21 9 404 6 400 2.09e-20 93.2
MS.gene09364.t1 AT5G22700 29.128 436 228 21 9 404 6 400 2.09e-20 93.2
MS.gene09364.t1 AT5G22700 29.128 436 228 21 9 404 6 400 2.09e-20 93.2
MS.gene09364.t1 AT5G56420 28.325 406 244 18 8 399 5 377 2.64e-20 92.8
MS.gene09364.t1 AT5G56420 28.325 406 244 18 8 399 5 377 2.64e-20 92.8
MS.gene09364.t1 AT5G56420 28.325 406 244 18 8 399 5 377 2.64e-20 92.8
MS.gene09364.t1 AT5G22700 29.128 436 228 21 9 404 43 437 3.17e-20 93.2
MS.gene09364.t1 AT3G59210 27.803 446 272 14 5 419 3 429 3.95e-20 92.8
MS.gene09364.t1 AT3G59210 27.803 446 272 14 5 419 3 429 3.95e-20 92.8
MS.gene09364.t1 AT3G59210 27.803 446 272 14 5 419 3 429 3.95e-20 92.8
MS.gene09364.t1 AT3G59210 27.803 446 272 14 5 419 3 429 3.95e-20 92.8
MS.gene09364.t1 AT3G59210 27.803 446 272 14 5 419 3 429 3.95e-20 92.8
MS.gene09364.t1 AT3G59230 27.649 387 212 11 9 348 12 377 4.51e-20 92.8
MS.gene09364.t1 AT1G58310 27.692 390 215 10 8 348 7 378 5.51e-20 92.4
MS.gene09364.t1 AT3G03040 27.297 381 217 10 9 350 2 361 5.93e-20 92.4
MS.gene09364.t1 AT4G13960 27.926 376 210 11 9 348 2 352 6.08e-20 92.0
MS.gene09364.t1 AT4G13960 27.926 376 210 11 9 348 2 352 6.08e-20 92.0
MS.gene09364.t1 AT3G59200 28.261 414 230 16 8 379 6 394 6.36e-20 92.4
MS.gene09364.t1 AT1G78750 29.412 391 224 15 2 361 11 380 6.46e-20 92.0
MS.gene09364.t1 AT1G78750 29.412 391 224 15 2 361 11 380 6.46e-20 92.0
MS.gene09364.t1 AT1G69630 30.000 370 219 14 2 348 11 363 7.28e-20 91.7
MS.gene09364.t1 AT2G26030 28.095 420 256 17 9 404 4 401 7.65e-20 91.7
MS.gene09364.t1 AT2G26030 28.095 420 256 17 9 404 4 401 7.65e-20 91.7
MS.gene09364.t1 AT5G56400 28.434 415 242 17 9 403 33 412 1.15e-19 91.3
MS.gene09364.t1 AT1G51370 29.261 352 207 13 7 346 17 338 1.25e-19 90.1
MS.gene09364.t1 AT2G26030 27.962 422 259 17 9 404 4 406 1.70e-19 90.9
MS.gene09364.t1 AT3G03030 29.012 324 185 9 9 296 2 316 2.15e-19 89.4
MS.gene09364.t1 AT5G38386 25.706 354 194 12 9 348 2 300 2.34e-19 89.7
MS.gene09364.t1 AT5G38386 25.706 354 194 12 9 348 2 300 2.34e-19 89.7
MS.gene09364.t1 AT3G59200 28.272 382 209 14 8 347 6 364 3.50e-19 89.0
MS.gene09364.t1 AT1G06630 29.050 358 220 12 8 347 11 352 6.13e-19 88.2
MS.gene09364.t1 AT1G06630 29.050 358 220 12 8 347 11 352 6.13e-19 88.2
MS.gene09364.t1 AT3G58960 27.865 384 211 14 9 353 2 358 6.67e-19 89.0
MS.gene09364.t1 AT3G52680 28.680 394 224 13 8 381 20 376 6.83e-19 89.0
MS.gene09364.t1 AT1G06630 29.050 358 220 12 8 347 20 361 7.23e-19 88.6
MS.gene09364.t1 AT1G06630 29.050 358 220 12 8 347 11 352 8.72e-19 88.2
MS.gene09364.t1 AT1G06630 29.050 358 220 12 8 347 11 352 8.72e-19 88.2
MS.gene09364.t1 AT1G06630 29.050 358 220 12 8 347 11 352 8.72e-19 88.2
MS.gene09364.t1 AT1G06630 29.050 358 220 12 8 347 11 352 8.72e-19 88.2
MS.gene09364.t1 AT3G58880 28.841 371 217 12 9 350 3 355 1.42e-18 87.8
MS.gene09364.t1 AT3G58900 29.058 382 206 13 9 348 2 360 1.58e-18 87.8
MS.gene09364.t1 AT5G44490 28.162 419 228 19 4 387 12 392 1.81e-18 87.8
MS.gene09364.t1 AT1G06630 29.050 358 220 12 8 347 11 352 2.05e-18 87.8
MS.gene09364.t1 AT5G44490 28.162 419 228 19 4 387 12 392 3.67e-18 87.0
MS.gene09364.t1 AT5G56370 29.825 399 240 17 9 399 2 368 4.57e-18 86.3
MS.gene09364.t1 AT5G56370 29.825 399 240 17 9 399 2 368 4.57e-18 86.3
MS.gene09364.t1 AT1G66300 29.947 374 208 17 4 348 24 372 8.04e-18 85.9
MS.gene09364.t1 AT5G56410 27.570 428 254 19 9 405 2 404 1.03e-17 85.5
MS.gene09364.t1 AT1G55030 27.404 416 262 15 9 414 19 404 1.06e-17 85.1
MS.gene09364.t1 AT5G53840 28.162 419 243 16 7 403 16 398 1.18e-17 85.1
MS.gene09364.t1 AT4G26350 24.408 422 257 14 9 403 2 388 1.20e-17 85.1
MS.gene09364.t1 AT1G55030 27.404 416 262 15 9 414 9 394 1.21e-17 85.1
MS.gene09364.t1 AT3G62440 27.525 396 222 17 9 361 2 375 1.30e-17 85.1
MS.gene09364.t1 AT3G58920 27.577 388 225 16 9 355 2 374 1.54e-17 85.1
MS.gene09364.t1 AT1G13780 26.456 412 244 16 9 386 10 396 1.64e-17 84.7
MS.gene09364.t1 AT5G25860 29.268 369 219 15 9 348 12 367 1.73e-17 84.7
MS.gene09364.t1 AT1G52650 27.968 379 207 16 9 348 2 353 2.16e-17 84.3
MS.gene09364.t1 AT3G59240 28.212 358 228 10 9 348 8 354 2.62e-17 84.3
MS.gene09364.t1 AT5G22670 28.199 422 248 18 8 403 10 402 2.98e-17 84.0
MS.gene09364.t1 AT3G58940 26.667 360 222 10 9 348 2 339 3.40e-17 84.3
MS.gene09364.t1 AT3G58940 26.667 360 222 10 9 348 2 339 3.40e-17 84.3
MS.gene09364.t1 AT5G38570 26.434 401 222 14 9 403 2 335 4.02e-17 83.2
MS.gene09364.t1 AT1G16930 30.328 366 203 15 9 347 15 355 4.46e-17 83.6
MS.gene09364.t1 AT1G16930 30.328 366 203 15 9 347 15 355 4.46e-17 83.6
MS.gene09364.t1 AT1G16930 30.328 366 203 15 9 347 15 355 4.46e-17 83.6
MS.gene09364.t1 AT4G00160 28.497 386 235 12 9 381 16 373 5.39e-17 83.2
MS.gene09364.t1 AT3G58930 26.804 388 217 12 9 348 2 370 6.11e-17 83.2
MS.gene09364.t1 AT3G58930 26.804 388 217 12 9 348 2 370 6.11e-17 83.2
MS.gene09364.t1 AT3G58930 26.804 388 217 12 9 348 2 370 6.11e-17 83.2
MS.gene09364.t1 AT2G04230 27.384 409 231 16 8 387 12 383 7.53e-17 82.8
MS.gene09364.t1 AT5G44950 28.501 407 236 17 8 389 3 379 7.74e-17 82.8
MS.gene09364.t1 AT2G42720 29.058 382 194 19 9 348 2 348 8.84e-17 82.4
MS.gene09364.t1 AT1G66290 28.671 429 238 19 4 403 24 413 1.00e-16 82.4
MS.gene09364.t1 AT4G09920 29.195 298 182 12 9 295 2 281 1.38e-16 80.5
MS.gene09364.t1 AT4G09920 29.195 298 182 12 9 295 2 281 1.38e-16 80.5
MS.gene09364.t1 AT3G42770 31.410 312 159 14 14 294 4 291 1.82e-16 82.0
MS.gene09364.t1 AT1G05080 29.056 413 252 15 8 403 12 400 1.99e-16 81.3
MS.gene09364.t1 AT4G13965 28.199 422 228 19 9 403 10 383 2.04e-16 81.3
MS.gene09364.t1 AT5G56370 31.503 346 197 17 9 346 2 315 2.06e-16 80.1
MS.gene09364.t1 AT4G09920 29.293 297 181 12 9 294 2 280 2.45e-16 79.7
MS.gene09364.t1 AT4G09920 29.293 297 181 12 9 294 2 280 2.45e-16 79.7
MS.gene09364.t1 AT4G09920 29.293 297 181 12 9 294 2 280 2.45e-16 79.7
MS.gene09364.t1 AT5G53635 27.952 415 220 21 11 387 2 375 2.65e-16 80.9
MS.gene09364.t1 AT1G66310 30.319 376 221 15 4 359 14 368 3.17e-16 80.9
MS.gene09364.t1 AT5G38590 30.769 260 166 8 9 264 2 251 8.72e-16 77.8
MS.gene09364.t1 AT5G25850 35.602 191 101 8 9 193 20 194 1.00e-15 79.3
MS.gene09364.t1 AT5G18780 28.162 419 250 17 8 403 10 400 1.09e-15 79.0
MS.gene09364.t1 AT5G18780 28.162 419 250 17 8 403 10 400 1.09e-15 79.0
MS.gene09364.t1 AT3G44060 30.027 373 211 21 14 360 4 352 1.18e-15 79.0
MS.gene09364.t1 AT5G22700 28.199 422 209 21 9 404 43 396 1.25e-15 79.0
MS.gene09364.t1 AT5G56820 26.716 408 248 15 9 405 15 382 1.28e-15 79.0
MS.gene09364.t1 AT3G59000 25.995 377 225 10 9 348 2 361 1.53e-15 79.0
MS.gene09364.t1 AT5G38390 27.441 379 203 16 9 348 2 347 1.53e-15 78.6
MS.gene09364.t1 AT5G41630 27.273 429 229 17 8 377 11 415 2.28e-15 78.2
MS.gene09364.t1 AT3G52680 28.771 358 199 12 9 346 21 342 2.35e-15 77.4
MS.gene09364.t1 AT1G13780 27.812 320 182 13 9 294 10 314 2.77e-15 77.0
MS.gene09364.t1 AT5G38392 35.407 209 107 8 9 199 2 200 5.71e-15 74.3
MS.gene09364.t1 AT5G22660 26.551 403 242 15 8 384 12 386 5.82e-15 77.0
MS.gene09364.t1 AT5G56690 29.412 391 232 16 11 382 4 369 6.17e-15 76.6
MS.gene09364.t1 AT4G15060 26.402 428 236 18 6 395 23 409 7.49e-15 76.6
MS.gene09364.t1 AT3G58900 29.052 327 181 11 9 298 2 314 8.49e-15 75.5
MS.gene09364.t1 AT3G58900 28.615 325 181 11 9 296 2 312 2.00e-14 74.3
MS.gene09364.t1 AT3G58900 28.615 325 181 11 9 296 2 312 2.00e-14 74.3
MS.gene09364.t1 AT5G22610 27.397 438 249 17 8 404 17 426 2.41e-14 75.1
MS.gene09364.t1 AT4G15060 28.274 336 196 13 6 314 169 486 2.74e-14 75.1
MS.gene09364.t1 AT3G60040 26.359 368 228 10 8 347 12 364 3.00e-14 75.1
MS.gene09364.t1 AT3G60040 26.431 367 227 10 9 347 230 581 3.77e-14 75.1
MS.gene09364.t1 AT3G49030 27.342 395 241 14 7 387 19 381 3.84e-14 74.3
MS.gene09364.t1 AT3G60040 26.431 367 227 10 9 347 232 583 3.92e-14 75.1
MS.gene09364.t1 AT3G60040 26.359 368 228 10 8 347 232 584 4.72e-14 74.7
MS.gene09364.t1 AT3G59000 30.698 215 122 8 9 197 2 215 4.74e-14 73.6
MS.gene09364.t1 AT3G60040 26.359 368 228 10 8 347 231 583 5.02e-14 74.7
MS.gene09364.t1 AT3G26930 27.970 404 249 17 8 399 20 393 5.86e-14 73.9
MS.gene09364.t1 AT5G56810 28.365 416 241 19 9 403 15 394 6.77e-14 73.6
MS.gene09364.t1 AT5G18780 28.333 360 213 14 9 346 11 347 7.66e-14 73.2
MS.gene09364.t1 AT5G18780 28.333 360 213 14 9 346 11 347 7.66e-14 73.2
MS.gene09364.t1 AT5G18770 26.747 415 266 15 9 403 24 420 1.10e-13 73.2
MS.gene09364.t1 AT1G48400 25.000 404 227 15 8 355 9 392 1.20e-13 73.2
MS.gene09364.t1 AT5G22730 26.950 423 259 16 8 403 27 426 1.55e-13 72.8
MS.gene09364.t1 AT5G22730 26.950 423 259 16 8 403 27 426 1.55e-13 72.8
MS.gene09364.t1 AT5G22610 27.208 419 244 16 8 404 17 396 1.77e-13 72.4
MS.gene09364.t1 AT3G58980 25.926 378 233 13 9 356 2 362 1.82e-13 72.8
MS.gene09364.t1 AT5G56560 27.027 407 260 15 6 403 2 380 1.82e-13 72.0
MS.gene09364.t1 AT5G35995 27.151 372 209 18 8 348 4 344 2.14e-13 72.0
MS.gene09364.t1 AT5G35995 27.151 372 209 18 8 348 4 344 2.14e-13 72.0
MS.gene09364.t1 AT3G26922 31.667 240 153 8 8 244 13 244 2.26e-13 70.9
MS.gene09364.t1 AT3G26922 31.667 240 153 8 8 244 13 244 2.26e-13 70.9
MS.gene09364.t1 AT3G59180 27.632 304 179 11 69 348 41 327 4.00e-13 71.2
MS.gene09364.t1 AT4G10420 27.389 314 188 11 99 403 1 283 4.40e-13 70.5
MS.gene09364.t1 AT5G53640 31.579 190 114 7 7 193 20 196 5.76e-13 68.6
MS.gene09364.t1 AT3G51530 27.320 388 228 15 9 376 30 383 6.85e-13 70.5
MS.gene09364.t1 AT1G66320 26.862 376 232 16 4 355 24 380 8.92e-13 70.1
MS.gene09364.t1 AT5G18770 26.629 353 226 12 9 342 24 362 1.11e-12 69.7
MS.gene09364.t1 AT4G13985 27.151 372 232 13 4 350 14 371 2.21e-12 68.9
MS.gene09364.t1 AT1G06630 28.197 305 186 11 8 294 11 300 2.91e-12 67.8
MS.gene09364.t1 AT5G22730 32.500 200 114 8 8 199 27 213 4.78e-12 67.8
MS.gene09364.t1 AT3G56780 24.888 446 251 15 11 399 9 427 4.98e-12 68.2
MS.gene09364.t1 AT5G56390 25.743 404 262 14 9 399 2 380 7.14e-12 67.4
MS.gene09364.t1 AT1G19070 62.222 45 17 0 9 53 2 46 1.04e-11 61.2
MS.gene09364.t1 AT5G22660 27.044 318 192 12 2 295 6 307 1.74e-11 65.5
MS.gene09364.t1 AT3G58930 24.734 376 206 10 9 348 2 336 2.16e-11 65.9
MS.gene09364.t1 AT3G58930 24.734 376 206 10 9 348 2 336 2.16e-11 65.9
MS.gene09364.t1 AT3G56780 25.231 432 239 15 11 385 9 413 2.54e-11 65.5
MS.gene09364.t1 AT3G26930 26.862 376 233 17 36 399 3 348 2.76e-11 65.5
MS.gene09364.t1 AT3G54910 25.836 329 212 11 79 404 36 335 3.44e-11 65.1
MS.gene09364.t1 AT3G54910 25.836 329 212 11 79 404 36 335 3.44e-11 65.1
MS.gene09364.t1 AT3G54910 25.836 329 212 11 79 404 36 335 3.44e-11 65.1
MS.gene09364.t1 AT3G14710 26.619 417 251 17 3 399 20 401 4.01e-11 65.1
MS.gene09364.t1 AT5G22720 32.353 204 119 8 4 199 18 210 4.04e-11 65.1
MS.gene09364.t1 AT3G49150 30.500 200 118 7 7 195 14 203 9.72e-11 63.9

Find 79 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGACTTAAATTTATTTAT+TGG 0.117769 4.1:+42173820 None:intergenic
ATTTACAAATTTGATTTCTT+TGG 0.216730 4.1:+42175749 None:intergenic
TCACAATTTATTATCTTTAT+CGG 0.257922 4.1:-42174908 MS.gene09364:CDS
ATGACTTAAATTTATTTATT+GGG 0.271672 4.1:+42173821 None:intergenic
CTCATTACATTTGAATTTGT+TGG 0.272022 4.1:-42174428 MS.gene09364:CDS
ACATGTTCTATAGGACTCTT+TGG 0.280320 4.1:+42175857 None:intergenic
CACTCGTGGTCTTAAAATTC+CGG 0.281718 4.1:-42175542 MS.gene09364:CDS
ATTGCAAGATCCTTAAGTTT+TGG 0.305825 4.1:+42174829 None:intergenic
AGTTTCCAACCTCCTTTCTT+CGG 0.314970 4.1:+42174498 None:intergenic
TCTATCTGGTTGTCCACATT+TGG 0.320155 4.1:-42175391 MS.gene09364:CDS
TAATTCAATTGAAGATCATT+TGG 0.321337 4.1:-42173888 MS.gene09364:CDS
ATCTTTGTTATGCAGTTTCT+CGG 0.334332 4.1:-42174970 MS.gene09364:intron
GTTTCCAACCTCCTTTCTTC+GGG 0.346723 4.1:+42174499 None:intergenic
GATCTCAATAAGTTTCTATC+TGG 0.393120 4.1:-42175405 MS.gene09364:CDS
GAGATCTTCAATACCCTTGA+AGG 0.396272 4.1:+42173862 None:intergenic
ACTTTCTAATGTCAAATCAT+TGG 0.400805 4.1:-42175097 MS.gene09364:CDS
ACTCGTGGTCTTAAAATTCC+GGG 0.408358 4.1:-42175541 MS.gene09364:CDS
TGACATTAGAAAGTCCCTTC+AGG 0.408452 4.1:+42175106 None:intergenic
AATAGCAGCTTCATCAAGAT+TGG 0.411607 4.1:+42175170 None:intergenic
ACTTAAGGATCTTGCAATTG+AGG 0.413085 4.1:-42174824 MS.gene09364:intron
AAAGTGAAGGTTGGGAATCT+TGG 0.417455 4.1:+42175803 None:intergenic
ACAGATCCAAGTCAAGTTCC+TGG 0.422138 4.1:+42175613 None:intergenic
ATCTGGTTGTCCACATTTGG+AGG 0.433975 4.1:-42175388 MS.gene09364:CDS
GGTAATTGAAAGTGAAGGTT+GGG 0.443422 4.1:+42175795 None:intergenic
ACACAATGCACCAAAACTTA+AGG 0.445433 4.1:-42174839 MS.gene09364:CDS
CTAAGTCTTGATAGTGAGAA+TGG 0.446214 4.1:-42175690 MS.gene09364:CDS
TATAGGACTCTTTGGTTGGT+AGG 0.450093 4.1:+42175865 None:intergenic
CAAGGTCCAGGAACTTGACT+TGG 0.457085 4.1:-42175619 MS.gene09364:CDS
AAGTGAAAAGAGGTGTTGAT+AGG 0.462824 4.1:+42175336 None:intergenic
GGATAGAACACATGTTCTAT+AGG 0.464515 4.1:+42175848 None:intergenic
TACAAATTGTTAAAATCCGC+AGG 0.464746 4.1:+42175135 None:intergenic
GAGAAAGATCTTCAAGTGAC+GGG 0.472802 4.1:+42175241 None:intergenic
TGAAATCAATTCCCGAAGAA+AGG 0.482837 4.1:-42174510 MS.gene09364:CDS
AGATCATTTGGATGCCTTCA+AGG 0.486402 4.1:-42173876 MS.gene09364:CDS
GGCATTAGATCTCAAGGTCC+AGG 0.496808 4.1:-42175631 MS.gene09364:CDS
GGAGGTTGGAAACTCGAGTT+GGG 0.509671 4.1:-42174489 MS.gene09364:CDS
AACACAGGGTCTGAATTCTC+TGG 0.516956 4.1:+42175774 None:intergenic
GTTCTATAGGACTCTTTGGT+TGG 0.518746 4.1:+42175861 None:intergenic
TGTTATGCAGTTTCTCGGCA+TGG 0.521848 4.1:-42174965 MS.gene09364:intron
TAACACTTAATAACAGAAGT+AGG 0.522805 4.1:+42175282 None:intergenic
TGTACACATGTGGGTTTCAA+AGG 0.528762 4.1:-42175652 MS.gene09364:CDS
TTGATTTCTTTGGATAACAC+AGG 0.538591 4.1:+42175759 None:intergenic
CATGTGTTCTATCCACAAGA+TGG 0.542093 4.1:-42175839 MS.gene09364:CDS
TTCAAAGGCATTAGATCTCA+AGG 0.542872 4.1:-42175637 MS.gene09364:CDS
GATCATTTGGATGCCTTCAA+GGG 0.544625 4.1:-42173875 MS.gene09364:CDS
GGTGGAGCCATTGATATCTC+CGG 0.546718 4.1:-42174468 MS.gene09364:CDS
AAATTCAAATGTAATGAGAC+TGG 0.547394 4.1:+42174433 None:intergenic
GACGGGGCATTAATTTGTAG+TGG 0.550813 4.1:+42175258 None:intergenic
TGGTAATTGAAAGTGAAGGT+TGG 0.551378 4.1:+42175794 None:intergenic
CAATTTGTATACAGTCCTGA+AGG 0.553354 4.1:-42175121 MS.gene09364:CDS
AGGAGGTTGGAAACTCGAGT+TGG 0.571978 4.1:-42174490 MS.gene09364:CDS
GCAGATCGACTCCCATCTTG+TGG 0.572297 4.1:+42175827 None:intergenic
ATGTGTTCTATCCACAAGAT+GGG 0.579779 4.1:-42175838 MS.gene09364:CDS
AGACTGGTTGTAAGACATGC+CGG 0.580136 4.1:+42174449 None:intergenic
TTCCATGTGTGAGTCACTCG+TGG 0.584920 4.1:-42175556 MS.gene09364:CDS
AGAGAAAGATCTTCAAGTGA+CGG 0.585255 4.1:+42175240 None:intergenic
AAATATCTGAGAATTGCAGT+TGG 0.586019 4.1:-42174882 MS.gene09364:CDS
AGACATGCCGGAGATATCAA+TGG 0.591239 4.1:+42174461 None:intergenic
AATTCCCGAAGAAAGGAGGT+TGG 0.591474 4.1:-42174503 MS.gene09364:CDS
GTGTTGGTTGAATTCTGCCC+CGG 0.596613 4.1:+42175523 None:intergenic
TCTTCATCTCCACGAAAATG+TGG 0.608198 4.1:-42175460 MS.gene09364:CDS
AATCAATTCCCGAAGAAAGG+AGG 0.619715 4.1:-42174507 MS.gene09364:CDS
GGTTGGAAACTCGAGTTGGG+TGG 0.621687 4.1:-42174486 MS.gene09364:CDS
TGATTTCTTTGGATAACACA+GGG 0.625009 4.1:+42175760 None:intergenic
ACCACATGATGTACACATGT+GGG 0.639358 4.1:-42175661 MS.gene09364:CDS
AATTTGTATACAGTCCTGAA+GGG 0.640048 4.1:-42175120 MS.gene09364:CDS
GACCACGAGTGACTCACACA+TGG 0.648921 4.1:+42175554 None:intergenic
TGAAAAGAAGACTTGAGTGT+TGG 0.649400 4.1:+42175507 None:intergenic
AAGTAGGCATATATAAACAA+AGG 0.650404 4.1:+42175298 None:intergenic
ACATGTGTACATCATGTGGT+AGG 0.651644 4.1:+42175664 None:intergenic
TACCACATGATGTACACATG+TGG 0.655277 4.1:-42175662 MS.gene09364:CDS
CTCGTGGTCTTAAAATTCCG+GGG 0.656606 4.1:-42175540 MS.gene09364:CDS
TCTCTGGTAATTGAAAGTGA+AGG 0.665693 4.1:+42175790 None:intergenic
GGTGTTGATAGGTAATGCAA+AGG 0.665875 4.1:+42175347 None:intergenic
AGATGAAGAATCTTTAGTGA+CGG 0.666233 4.1:+42175474 None:intergenic
AGAAAGATCTTCAAGTGACG+GGG 0.690406 4.1:+42175242 None:intergenic
TCACACATGGAAAGCCTAAG+CGG 0.698789 4.1:+42175567 None:intergenic
ACCCACATGTGTACATCATG+TGG 0.700849 4.1:+42175660 None:intergenic
TATGCAGTTTCTCGGCATGG+AGG 0.704407 4.1:-42174962 MS.gene09364:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATTAATTTTTTTAT+CGG - chr4.1:42175789-42175808 MS.gene09364:CDS 0.0%
!! TAAAATTAAGTATTCAATAT+TGG - chr4.1:42175849-42175868 MS.gene09364:CDS 10.0%
!!! AAAATTCTAATGATAATTTT+TGG - chr4.1:42175219-42175238 MS.gene09364:CDS 10.0%
!! ATGAAACTTGTAATTAAAAA+AGG + chr4.1:42174743-42174762 None:intergenic 15.0%
!! TCACAATTTATTATCTTTAT+CGG - chr4.1:42174863-42174882 MS.gene09364:CDS 15.0%
!!! ACTTAGTTTTCTTATATTTT+CGG + chr4.1:42174067-42174086 None:intergenic 15.0%
!!! ATTTACAAATTTGATTTCTT+TGG + chr4.1:42174025-42174044 None:intergenic 15.0%
!!! TTGCACAATTTTTTTTTTAA+AGG - chr4.1:42174993-42175012 MS.gene09364:intron 15.0%
!! AAGTAAAATAGTTTGAAAGA+AGG + chr4.1:42175171-42175190 None:intergenic 20.0%
!! TAATTCAATTGAAGATCATT+TGG - chr4.1:42175883-42175902 MS.gene09364:CDS 20.0%
!! TATATATACTATTACATTCG+TGG - chr4.1:42175710-42175729 MS.gene09364:CDS 20.0%
!! TTATCTTATATGCTATCATT+TGG - chr4.1:42175196-42175215 MS.gene09364:CDS 20.0%
!!! ACTTTCTGTTTTAATGAAAA+AGG - chr4.1:42175568-42175587 MS.gene09364:CDS 20.0%
!!! TTGGTATGTTAATATTTTGT+TGG - chr4.1:42175591-42175610 MS.gene09364:CDS 20.0%
!!! TTTGTAAAGTCAAATTTTCT+AGG + chr4.1:42174576-42174595 None:intergenic 20.0%
! AAATTCAAATGTAATGAGAC+TGG + chr4.1:42175341-42175360 None:intergenic 25.0%
! AAGTAGGCATATATAAACAA+AGG + chr4.1:42174476-42174495 None:intergenic 25.0%
! AATATAATAAGCTCAAAACC+TGG - chr4.1:42175020-42175039 MS.gene09364:intron 25.0%
! ACTTTCTAATGTCAAATCAT+TGG - chr4.1:42174674-42174693 MS.gene09364:intron 25.0%
! AGTTTGAAAGAAGGTTAAAT+TGG + chr4.1:42175162-42175181 None:intergenic 25.0%
! CTCATTACATTTGAATTTGT+TGG - chr4.1:42175343-42175362 MS.gene09364:CDS 25.0%
! TAACACTTAATAACAGAAGT+AGG + chr4.1:42174492-42174511 None:intergenic 25.0%
! TCAAAACATAAAAACTGAGT+TGG - chr4.1:42175369-42175388 MS.gene09364:CDS 25.0%
!! AAGTATTCAATATTGGTTAC+AGG - chr4.1:42175856-42175875 MS.gene09364:CDS 25.0%
!!! TCTGTTTTAATGAAAAAGGT+TGG - chr4.1:42175572-42175591 MS.gene09364:CDS 25.0%
!!! TTCTCTTGTTGATTTTTCAT+TGG - chr4.1:42174548-42174567 MS.gene09364:intron 25.0%
AAAAAAAGTTCCTCCAAATG+TGG + chr4.1:42174396-42174415 None:intergenic 30.0%
AAATATCTGAGAATTGCAGT+TGG - chr4.1:42174889-42174908 MS.gene09364:CDS 30.0%
AATGTCTGTAAGAGTAAGAA+AGG + chr4.1:42175650-42175669 None:intergenic 30.0%
AATTTGTATACAGTCCTGAA+GGG - chr4.1:42174651-42174670 MS.gene09364:intron 30.0%
AGATGAAGAATCTTTAGTGA+CGG + chr4.1:42174300-42174319 None:intergenic 30.0%
AGTAGAAAAAAGTTTACGCA+AGG - chr4.1:42175471-42175490 MS.gene09364:CDS 30.0%
GAGATATAAAGTTGTGTTGA+TGG + chr4.1:42175681-42175700 None:intergenic 30.0%
GATCTCAATAAGTTTCTATC+TGG - chr4.1:42174366-42174385 MS.gene09364:intron 30.0%
GTAGAAAAAAGTTTACGCAA+GGG - chr4.1:42175472-42175491 MS.gene09364:CDS 30.0%
TACAAATTGTTAAAATCCGC+AGG + chr4.1:42174639-42174658 None:intergenic 30.0%
TAGAAAAAAGTTTACGCAAG+GGG - chr4.1:42175473-42175492 MS.gene09364:CDS 30.0%
TGAAAGAAGGTTAAATTGGA+AGG + chr4.1:42175158-42175177 None:intergenic 30.0%
TGATTTCTTTGGATAACACA+GGG + chr4.1:42174014-42174033 None:intergenic 30.0%
TGTCTTCAAAAAGTGAAAAG+AGG + chr4.1:42174448-42174467 None:intergenic 30.0%
TTGATTTCTTTGGATAACAC+AGG + chr4.1:42174015-42174034 None:intergenic 30.0%
! AAAAAATCTTATTGCCGCTT+AGG - chr4.1:42174190-42174209 MS.gene09364:intron 30.0%
! AACTATACGTATCTTTTGCT+AGG + chr4.1:42175063-42175082 None:intergenic 30.0%
! ATCTTTGTTATGCAGTTTCT+CGG - chr4.1:42174801-42174820 MS.gene09364:intron 30.0%
! ATTGCAAGATCCTTAAGTTT+TGG + chr4.1:42174945-42174964 None:intergenic 30.0%
! ATTTTGTTGGTATGATGTTG+TGG - chr4.1:42175604-42175623 MS.gene09364:CDS 30.0%
! GAAAGTATATAGACTCTGTA+TGG + chr4.1:42175554-42175573 None:intergenic 30.0%
! TATTTTCATTTGTAAGCCTG+CGG - chr4.1:42174620-42174639 MS.gene09364:intron 30.0%
! TTTTGTTGGTATGATGTTGT+GGG - chr4.1:42175605-42175624 MS.gene09364:CDS 30.0%
!! TACTCTTCTTTTCTTTGAAG+TGG + chr4.1:42175455-42175474 None:intergenic 30.0%
!! TATAAAGTTGTGTTGATGGT+CGG + chr4.1:42175677-42175696 None:intergenic 30.0%
!!! ACTCTTCTTTTCTTTGAAGT+GGG + chr4.1:42175454-42175473 None:intergenic 30.0%
AATAGCAGCTTCATCAAGAT+TGG + chr4.1:42174604-42174623 None:intergenic 35.0%
ACACAATGCACCAAAACTTA+AGG - chr4.1:42174932-42174951 MS.gene09364:CDS 35.0%
ACATGTTCTATAGGACTCTT+TGG + chr4.1:42173917-42173936 None:intergenic 35.0%
ACTTAAGGATCTTGCAATTG+AGG - chr4.1:42174947-42174966 MS.gene09364:CDS 35.0%
AGAGAAAGATCTTCAAGTGA+CGG + chr4.1:42174534-42174553 None:intergenic 35.0%
ATGTGTTCTATCCACAAGAT+GGG - chr4.1:42173933-42173952 MS.gene09364:intron 35.0%
CAATTTGTATACAGTCCTGA+AGG - chr4.1:42174650-42174669 MS.gene09364:intron 35.0%
GGATAGAACACATGTTCTAT+AGG + chr4.1:42173926-42173945 None:intergenic 35.0%
GGTAATTGAAAGTGAAGGTT+GGG + chr4.1:42173979-42173998 None:intergenic 35.0%
TCTCTGGTAATTGAAAGTGA+AGG + chr4.1:42173984-42174003 None:intergenic 35.0%
TGAAAAGAAGACTTGAGTGT+TGG + chr4.1:42174267-42174286 None:intergenic 35.0%
TGAAATCAATTCCCGAAGAA+AGG - chr4.1:42175261-42175280 MS.gene09364:CDS 35.0%
TGGTAATTGAAAGTGAAGGT+TGG + chr4.1:42173980-42173999 None:intergenic 35.0%
TTTGTTGGTATGATGTTGTG+GGG - chr4.1:42175606-42175625 MS.gene09364:CDS 35.0%
!! AAGTGAAAAGAGGTGTTGAT+AGG + chr4.1:42174438-42174457 None:intergenic 35.0%
!! CTAAGTCTTGATAGTGAGAA+TGG - chr4.1:42174081-42174100 MS.gene09364:intron 35.0%
!! TTATATTTTCGGTGCGTCTT+AGG + chr4.1:42174056-42174075 None:intergenic 35.0%
!! TTCAAAGGCATTAGATCTCA+AGG - chr4.1:42174134-42174153 MS.gene09364:intron 35.0%
!!! GCGGCAATAAGATTTTTTCA+TGG + chr4.1:42174188-42174207 None:intergenic 35.0%
!!! TGGAGGAACTTTTTTTAGCT+GGG - chr4.1:42174400-42174419 MS.gene09364:CDS 35.0%
!!! TTGGAGGAACTTTTTTTAGC+TGG - chr4.1:42174399-42174418 MS.gene09364:CDS 35.0%
AAAGTGAAGGTTGGGAATCT+TGG + chr4.1:42173971-42173990 None:intergenic 40.0%
AACTCGTACCCATACTAGTA+CGG + chr4.1:42175512-42175531 None:intergenic 40.0%
AATCAATTCCCGAAGAAAGG+AGG - chr4.1:42175264-42175283 MS.gene09364:CDS 40.0%
ACATGTGTACATCATGTGGT+AGG + chr4.1:42174110-42174129 None:intergenic 40.0%
ACCACATGATGTACACATGT+GGG - chr4.1:42174110-42174129 MS.gene09364:intron 40.0%
AGAAAGATCTTCAAGTGACG+GGG + chr4.1:42174532-42174551 None:intergenic 40.0%
AGAAATCCTCCGTACTAGTA+TGG - chr4.1:42175500-42175519 MS.gene09364:CDS 40.0%
AGATCATTTGGATGCCTTCA+AGG - chr4.1:42175895-42175914 MS.gene09364:CDS 40.0%
AGTTTCCAACCTCCTTTCTT+CGG + chr4.1:42175276-42175295 None:intergenic 40.0%
CATGTGTTCTATCCACAAGA+TGG - chr4.1:42173932-42173951 MS.gene09364:intron 40.0%
GAAATCCTCCGTACTAGTAT+GGG - chr4.1:42175501-42175520 MS.gene09364:CDS 40.0%
GAGAAAGATCTTCAAGTGAC+GGG + chr4.1:42174533-42174552 None:intergenic 40.0%
GAGATCTTCAATACCCTTGA+AGG + chr4.1:42175912-42175931 None:intergenic 40.0%
GATCATTTGGATGCCTTCAA+GGG - chr4.1:42175896-42175915 MS.gene09364:CDS 40.0%
GTTCTATAGGACTCTTTGGT+TGG + chr4.1:42173913-42173932 None:intergenic 40.0%
TACCACATGATGTACACATG+TGG - chr4.1:42174109-42174128 MS.gene09364:intron 40.0%
TATAGGACTCTTTGGTTGGT+AGG + chr4.1:42173909-42173928 None:intergenic 40.0%
TCACTCAAGTAAGCTAGAGA+AGG - chr4.1:42175414-42175433 MS.gene09364:CDS 40.0%
TCTATCTGGTTGTCCACATT+TGG - chr4.1:42174380-42174399 MS.gene09364:intron 40.0%
TCTTCATCTCCACGAAAATG+TGG - chr4.1:42174311-42174330 MS.gene09364:intron 40.0%
TGACATTAGAAAGTCCCTTC+AGG + chr4.1:42174668-42174687 None:intergenic 40.0%
TGTACACATGTGGGTTTCAA+AGG - chr4.1:42174119-42174138 MS.gene09364:intron 40.0%
! ACTCGTGGTCTTAAAATTCC+GGG - chr4.1:42174230-42174249 MS.gene09364:intron 40.0%
! CACTCGTGGTCTTAAAATTC+CGG - chr4.1:42174229-42174248 MS.gene09364:intron 40.0%
! TAGAATACGCCACATTTTCG+TGG + chr4.1:42174323-42174342 None:intergenic 40.0%
!! GGTGTTGATAGGTAATGCAA+AGG + chr4.1:42174427-42174446 None:intergenic 40.0%
AACACAGGGTCTGAATTCTC+TGG + chr4.1:42174000-42174019 None:intergenic 45.0%
AATTCCCGAAGAAAGGAGGT+TGG - chr4.1:42175268-42175287 MS.gene09364:CDS 45.0%
ACAGATCCAAGTCAAGTTCC+TGG + chr4.1:42174161-42174180 None:intergenic 45.0%
ACCCACATGTGTACATCATG+TGG + chr4.1:42174114-42174133 None:intergenic 45.0%
AGACATGCCGGAGATATCAA+TGG + chr4.1:42175313-42175332 None:intergenic 45.0%
ATCTGGTTGTCCACATTTGG+AGG - chr4.1:42174383-42174402 MS.gene09364:intron 45.0%
GTTTCCAACCTCCTTTCTTC+GGG + chr4.1:42175275-42175294 None:intergenic 45.0%
TCACACATGGAAAGCCTAAG+CGG + chr4.1:42174207-42174226 None:intergenic 45.0%
TGTTATGCAGTTTCTCGGCA+TGG - chr4.1:42174806-42174825 MS.gene09364:intron 45.0%
! AGACTGGTTGTAAGACATGC+CGG + chr4.1:42175325-42175344 None:intergenic 45.0%
! CTCGTGGTCTTAAAATTCCG+GGG - chr4.1:42174231-42174250 MS.gene09364:intron 45.0%
!! GACGGGGCATTAATTTGTAG+TGG + chr4.1:42174516-42174535 None:intergenic 45.0%
!!! ATATATTTAAAAATTTTAAG+AGG + chr4.1:42175777-42175796 None:intergenic 5.0%
AGGAGGTTGGAAACTCGAGT+TGG - chr4.1:42175281-42175300 MS.gene09364:CDS 50.0%
CAAGGTCCAGGAACTTGACT+TGG - chr4.1:42174152-42174171 MS.gene09364:intron 50.0%
GGAGGTTGGAAACTCGAGTT+GGG - chr4.1:42175282-42175301 MS.gene09364:CDS 50.0%
GGCATTAGATCTCAAGGTCC+AGG - chr4.1:42174140-42174159 MS.gene09364:intron 50.0%
GGTGGAGCCATTGATATCTC+CGG - chr4.1:42175303-42175322 MS.gene09364:CDS 50.0%
GTCTTTGCTCTTCTTGTGCC+AGG + chr4.1:42175041-42175060 None:intergenic 50.0%
GTTGGTATGATGTTGTGGGG+TGG - chr4.1:42175609-42175628 MS.gene09364:CDS 50.0%
TATGCAGTTTCTCGGCATGG+AGG - chr4.1:42174809-42174828 MS.gene09364:intron 50.0%
TCGTACCCATACTAGTACGG+AGG + chr4.1:42175509-42175528 None:intergenic 50.0%
TTCCATGTGTGAGTCACTCG+TGG - chr4.1:42174215-42174234 MS.gene09364:intron 50.0%
!! GTGTTGGTTGAATTCTGCCC+CGG + chr4.1:42174251-42174270 None:intergenic 50.0%
GACCACGAGTGACTCACACA+TGG + chr4.1:42174220-42174239 None:intergenic 55.0%
! GCAGATCGACTCCCATCTTG+TGG + chr4.1:42173947-42173966 None:intergenic 55.0%
!! GGTTGGAAACTCGAGTTGGG+TGG - chr4.1:42175285-42175304 MS.gene09364:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 42173832 42175961 42173832 ID=MS.gene09364
chr4.1 mRNA 42173832 42175961 42173832 ID=MS.gene09364.t1;Parent=MS.gene09364
chr4.1 exon 42175074 42175961 42175074 ID=MS.gene09364.t1.exon1;Parent=MS.gene09364.t1
chr4.1 CDS 42175074 42175961 42175074 ID=cds.MS.gene09364.t1;Parent=MS.gene09364.t1
chr4.1 exon 42174825 42174977 42174825 ID=MS.gene09364.t1.exon2;Parent=MS.gene09364.t1
chr4.1 CDS 42174825 42174977 42174825 ID=cds.MS.gene09364.t1;Parent=MS.gene09364.t1
chr4.1 exon 42174385 42174540 42174385 ID=MS.gene09364.t1.exon3;Parent=MS.gene09364.t1
chr4.1 CDS 42174385 42174540 42174385 ID=cds.MS.gene09364.t1;Parent=MS.gene09364.t1
chr4.1 exon 42173832 42173915 42173832 ID=MS.gene09364.t1.exon4;Parent=MS.gene09364.t1
chr4.1 CDS 42173832 42173915 42173832 ID=cds.MS.gene09364.t1;Parent=MS.gene09364.t1
Gene Sequence

>MS.gene09364

ATGGCGTGCTCTGATGAAGAACATGATCGATTAAGCAATCTCTCAGACGATTTGATTTGTCATATTTTGTCTTTCCTACCAACCAAAGAGTCCTATAGAACATGTGTTCTATCCACAAGATGGGAGTCGATCTGCACCAAGATTCCCAACCTTCACTTTCAATTACCAGAGAATTCAGACCCTGTGTTATCCAAAGAAATCAAATTTGTAAATGTTGCTCTCCTAAGACGCACCGAAAATATAAGAAAACTAAGTCTTGATAGTGAGAATGGCTGCCTACCACATGATGTACACATGTGGGTTTCAAAGGCATTAGATCTCAAGGTCCAGGAACTTGACTTGGATCTGTTTCGCCATGAAAAAATCTTATTGCCGCTTAGGCTTTCCATGTGTGAGTCACTCGTGGTCTTAAAATTCCGGGGCAGAATTCAACCAACACTCAAGTCTTCTTTTCATGTATATTTACCGTCACTAAAGATTCTTCATCTCCACGAAAATGTGGCGTATTCTATCTTTGATGATTGTGCAGAGTATGATCTCAATAAGTTTCTATCTGGTTGTCCACATTTGGAGGAACTTTTTTTAGCTGGGACCTTTGCATTACCTATCAACACCTCTTTTCACTTTTTGAAGACATTATGCCTTTGTTTATATATGCCTACTTCTGTTATTAAGTGTTATCCACTACAAATTAATGCCCCGTCACTTGAAGATCTTTCTCTTGTTGATTTTTCATTGGCTCCTAGAAAATTTGACTTTACAAATTTGTCCAATCTTGATGAAGCTGCTATTTTCATTTGTAAGCCTGCGGATTTTAACAATTTGTATACAGTCCTGAAGGGACTTTCTAATGTCAAATCATTGGCTCTCGATTCTAACACTTTTCATGTAAGTTTCATAAATATTTTCCTTTTTTAATTACAAGTTTCATATTTAGTCACTCATATGCAATTCTATTCTTATTTTATCATCTTTGTTATGCAGTTTCTCGGCATGGAGGACAAACTTGACAACTTACATCTTCTCACTTTTCACAATTTATTATCTTTATCGGTTGAAATATCTGAGAATTGCAGTTGGAATATGCTTGTCAGCTTTCTACACAATGCACCAAAACTTAAGGATCTTGCAATTGAGGTGTGAATGATTTTTTAACTATATTTGCACAATTTTTTTTTTAAAGGATAAAATATAATAAGCTCAAAACCTGGCACAAGAAGAGCAAAGACCTAGCAAAAGATACGTATAGTTTGCAAATAAAACAGATCAACAAATTAATTAATTCAATACAATCTATATATGATCTATATTTGTGTAGATTGTCCTTCCAATTTAACCTTCTTTCAAACTATTTTACTTACAATTTATCTTATATGCTATCATTTGGAAAATTCTAATGATAATTTTTGGTTTACATGCAGAGTAAAATTGAAATCAATTCCCGAAGAAAGGAGGTTGGAAACTCGAGTTGGGTGGAGCCATTGATATCTCCGGCATGTCTTACAACCAGTCTCATTACATTTGAATTTGTTGGAATTCAAAACATAAAAACTGAGTTGGACTTTACGCGATATATTGTAAGTCACTCAAGTAAGCTAGAGAAGGTAAAGATTTTCACACCCACTTCAAAGAAAAGAAGAGTAGAAAAAAGTTTACGCAAGGGGTCAAAGAAATCCTCCGTACTAGTATGGGTACGAGTTTTACACACTTTCTTTTCTTCCATACAGAGTCTATATACTTTCTGTTTTAATGAAAAAGGTTGGTATGTTAATATTTTGTTGGTATGATGTTGTGGGGTGGTGATAGAACTTTCATCCTTTCTTACTCTTACAGACATTAACTCCGACCATCAACACAACTTTATATCTCTTGAATGTATATATATACTATTACATTCGTGGTTGAGAATAAGACTGTTTTTCTTAAAATATGTAAATTATATCCTCTTAAAATTTTTAAATATATTAATTTTTTTATCGGTATACTTTAATGATTTTATCATTTATATTTATAATCTTAAAATTAAGTATTCAATATTGGTTACAGGATATTAATTCAATTGAAGATCATTTGGATGCCTTCAAGGGTATTGAAGATCTCTTTTTTGAGCTGTTCTTGCCCAATAAATAA

Protein sequence

>MS.gene09364.t1

MACSDEEHDRLSNLSDDLICHILSFLPTKESYRTCVLSTRWESICTKIPNLHFQLPENSDPVLSKEIKFVNVALLRRTENIRKLSLDSENGCLPHDVHMWVSKALDLKVQELDLDLFRHEKILLPLRLSMCESLVVLKFRGRIQPTLKSSFHVYLPSLKILHLHENVAYSIFDDCAEYDLNKFLSGCPHLEELFLAGTFALPINTSFHFLKTLCLCLYMPTSVIKCYPLQINAPSLEDLSLVDFSLAPRKFDFTNLSNLDEAAIFICKPADFNNLYTVLKGLSNVKSLALDSNTFHFLGMEDKLDNLHLLTFHNLLSLSVEISENCSWNMLVSFLHNAPKLKDLAIESKIEINSRRKEVGNSSWVEPLISPACLTTSLITFEFVGIQNIKTELDFTRYIDINSIEDHLDAFKGIEDLFFELFLPNK