Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07660.t1 | RHN60588.1 | 73 | 326 | 16 | 1 | 1 | 254 | 1 | 326 | 4.50E-105 | 391 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07660.t1 | Q8L7H1 | 27.5 | 200 | 96 | 3 | 9 | 196 | 8 | 170 | 2.2e-12 | 74.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07660.t1 | A0A072UVN8 | 73.0 | 326 | 16 | 1 | 1 | 254 | 1 | 326 | 3.2e-105 | 391.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07660.t1 | MTR_4g056040 | 90.654 | 214 | 19 | 1 | 1 | 214 | 1 | 213 | 1.13e-137 | 397 |
| MS.gene07660.t1 | MTR_4g055990 | 79.638 | 221 | 37 | 3 | 1 | 214 | 1 | 220 | 1.50e-119 | 351 |
| MS.gene07660.t1 | MTR_4g055990 | 79.638 | 221 | 37 | 3 | 1 | 214 | 1 | 220 | 1.95e-119 | 350 |
| MS.gene07660.t1 | MTR_4g055580 | 79.186 | 221 | 38 | 3 | 1 | 214 | 92 | 311 | 9.16e-117 | 347 |
| MS.gene07660.t1 | MTR_4g056070 | 78.571 | 224 | 37 | 4 | 1 | 214 | 1 | 223 | 3.50e-116 | 340 |
| MS.gene07660.t1 | MTR_4g056020 | 72.300 | 213 | 28 | 2 | 1 | 213 | 1 | 182 | 3.14e-97 | 292 |
| MS.gene07660.t1 | MTR_4g056030 | 71.981 | 207 | 28 | 1 | 1 | 207 | 1 | 177 | 7.33e-95 | 286 |
| MS.gene07660.t1 | MTR_1g038710 | 59.174 | 218 | 54 | 3 | 1 | 214 | 11 | 197 | 7.58e-68 | 217 |
| MS.gene07660.t1 | MTR_1g090900 | 57.212 | 208 | 56 | 3 | 1 | 205 | 1 | 178 | 5.43e-66 | 204 |
| MS.gene07660.t1 | MTR_4g056010 | 91.000 | 100 | 9 | 0 | 98 | 197 | 1 | 100 | 8.31e-60 | 184 |
| MS.gene07660.t1 | MTR_1g090883 | 48.636 | 220 | 67 | 5 | 2 | 214 | 12 | 192 | 2.57e-50 | 169 |
| MS.gene07660.t1 | MTR_4g093690 | 44.144 | 222 | 76 | 5 | 1 | 214 | 10 | 191 | 9.76e-46 | 154 |
| MS.gene07660.t1 | MTR_7g110920 | 40.351 | 171 | 51 | 4 | 129 | 254 | 1 | 165 | 9.43e-21 | 89.7 |
| MS.gene07660.t1 | MTR_8g014160 | 33.166 | 199 | 102 | 8 | 4 | 193 | 36 | 212 | 1.20e-13 | 70.5 |
| MS.gene07660.t1 | MTR_8g014260 | 30.808 | 198 | 100 | 5 | 6 | 191 | 13 | 185 | 3.38e-13 | 69.3 |
| MS.gene07660.t1 | MTR_4g032730 | 31.771 | 192 | 102 | 6 | 9 | 193 | 15 | 184 | 2.05e-12 | 67.0 |
| MS.gene07660.t1 | MTR_8g017280 | 26.087 | 230 | 131 | 4 | 8 | 227 | 35 | 235 | 2.49e-12 | 65.9 |
| MS.gene07660.t1 | MTR_2g007500 | 30.851 | 188 | 87 | 6 | 9 | 193 | 14 | 161 | 2.57e-12 | 66.2 |
| MS.gene07660.t1 | MTR_8g062010 | 30.583 | 206 | 110 | 7 | 1 | 200 | 1 | 179 | 2.84e-12 | 66.2 |
| MS.gene07660.t1 | MTR_8g017280 | 26.201 | 229 | 130 | 4 | 9 | 227 | 36 | 235 | 4.57e-12 | 65.9 |
| MS.gene07660.t1 | MTR_8g468760 | 31.373 | 204 | 105 | 8 | 1 | 193 | 1 | 180 | 5.87e-12 | 65.5 |
| MS.gene07660.t1 | MTR_7g033945 | 32.500 | 200 | 81 | 10 | 9 | 193 | 11 | 171 | 5.99e-12 | 63.2 |
| MS.gene07660.t1 | MTR_7g115270 | 26.943 | 193 | 105 | 5 | 9 | 193 | 12 | 176 | 7.66e-12 | 65.1 |
| MS.gene07660.t1 | MTR_1g085120 | 29.557 | 203 | 112 | 7 | 9 | 211 | 179 | 350 | 1.02e-11 | 64.7 |
| MS.gene07660.t1 | MTR_1g085120 | 29.557 | 203 | 112 | 7 | 9 | 211 | 167 | 338 | 1.09e-11 | 64.7 |
| MS.gene07660.t1 | MTR_1g085120 | 29.557 | 203 | 112 | 7 | 9 | 211 | 92 | 263 | 1.16e-11 | 64.7 |
| MS.gene07660.t1 | MTR_2g007100 | 59.091 | 44 | 18 | 0 | 9 | 52 | 2 | 45 | 1.46e-11 | 59.3 |
| MS.gene07660.t1 | MTR_6g022390 | 29.221 | 154 | 85 | 5 | 9 | 159 | 5 | 137 | 1.66e-11 | 61.2 |
| MS.gene07660.t1 | MTR_3g114200 | 26.286 | 175 | 92 | 4 | 7 | 176 | 17 | 159 | 1.71e-11 | 61.2 |
| MS.gene07660.t1 | MTR_2g007400 | 29.327 | 208 | 112 | 9 | 9 | 207 | 12 | 193 | 2.71e-11 | 63.5 |
| MS.gene07660.t1 | MTR_7g110910 | 78.947 | 38 | 8 | 0 | 1 | 38 | 158 | 195 | 2.84e-11 | 61.6 |
| MS.gene07660.t1 | MTR_7g098510 | 30.481 | 187 | 97 | 4 | 9 | 193 | 18 | 173 | 2.94e-11 | 63.2 |
| MS.gene07660.t1 | MTR_7g056447 | 32.178 | 202 | 100 | 8 | 1 | 199 | 1 | 168 | 8.07e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07660.t1 | AT4G14103 | 33.161 | 193 | 96 | 5 | 8 | 196 | 7 | 170 | 7.29e-20 | 88.6 |
| MS.gene07660.t1 | AT4G14103 | 33.333 | 192 | 95 | 5 | 9 | 196 | 8 | 170 | 9.48e-20 | 87.8 |
| MS.gene07660.t1 | AT4G14103 | 33.333 | 192 | 95 | 5 | 9 | 196 | 8 | 170 | 9.48e-20 | 87.8 |
| MS.gene07660.t1 | AT3G59190 | 31.683 | 202 | 112 | 6 | 9 | 209 | 12 | 188 | 3.39e-19 | 86.3 |
| MS.gene07660.t1 | AT3G59190 | 32.447 | 188 | 104 | 5 | 9 | 195 | 12 | 177 | 6.96e-19 | 86.3 |
| MS.gene07660.t1 | AT1G58310 | 31.683 | 202 | 102 | 6 | 9 | 196 | 8 | 187 | 4.66e-18 | 83.6 |
| MS.gene07660.t1 | AT3G03030 | 33.014 | 209 | 102 | 7 | 9 | 208 | 2 | 181 | 8.39e-18 | 82.0 |
| MS.gene07660.t1 | AT3G03030 | 33.014 | 209 | 102 | 7 | 9 | 208 | 2 | 181 | 2.00e-17 | 81.6 |
| MS.gene07660.t1 | AT5G62970 | 36.923 | 195 | 100 | 9 | 9 | 193 | 2 | 183 | 6.83e-17 | 80.1 |
| MS.gene07660.t1 | AT5G22670 | 34.043 | 188 | 88 | 6 | 8 | 193 | 10 | 163 | 4.04e-16 | 77.8 |
| MS.gene07660.t1 | AT3G03040 | 34.969 | 163 | 84 | 2 | 9 | 170 | 2 | 143 | 1.16e-15 | 76.6 |
| MS.gene07660.t1 | AT4G14096 | 30.729 | 192 | 98 | 6 | 8 | 195 | 7 | 167 | 1.71e-15 | 76.3 |
| MS.gene07660.t1 | AT4G14096 | 30.729 | 192 | 98 | 6 | 8 | 195 | 7 | 167 | 1.71e-15 | 76.3 |
| MS.gene07660.t1 | AT3G59230 | 31.443 | 194 | 105 | 5 | 9 | 196 | 12 | 183 | 2.42e-15 | 75.9 |
| MS.gene07660.t1 | AT3G59170 | 32.353 | 204 | 109 | 7 | 9 | 197 | 7 | 196 | 6.50e-15 | 74.3 |
| MS.gene07660.t1 | AT5G41830 | 32.323 | 198 | 108 | 5 | 3 | 193 | 7 | 185 | 8.76e-15 | 73.9 |
| MS.gene07660.t1 | AT5G38392 | 33.498 | 203 | 98 | 6 | 9 | 199 | 2 | 179 | 9.35e-15 | 71.6 |
| MS.gene07660.t1 | AT3G59000 | 32.653 | 196 | 105 | 6 | 9 | 199 | 2 | 175 | 2.85e-14 | 72.4 |
| MS.gene07660.t1 | AT4G00320 | 30.846 | 201 | 107 | 6 | 3 | 193 | 7 | 185 | 6.09e-14 | 71.6 |
| MS.gene07660.t1 | AT4G00315 | 31.500 | 200 | 96 | 8 | 9 | 200 | 2 | 168 | 1.96e-13 | 70.1 |
| MS.gene07660.t1 | AT3G59000 | 32.370 | 173 | 93 | 6 | 9 | 179 | 2 | 152 | 3.30e-13 | 68.9 |
| MS.gene07660.t1 | AT5G38396 | 32.353 | 204 | 101 | 9 | 9 | 200 | 2 | 180 | 4.98e-13 | 68.9 |
| MS.gene07660.t1 | AT5G41840 | 30.256 | 195 | 105 | 7 | 9 | 193 | 14 | 187 | 6.60e-13 | 68.6 |
| MS.gene07660.t1 | AT3G58920 | 30.102 | 196 | 101 | 6 | 9 | 195 | 2 | 170 | 8.33e-13 | 68.2 |
| MS.gene07660.t1 | AT5G56380 | 32.990 | 194 | 92 | 7 | 9 | 194 | 2 | 165 | 8.98e-13 | 68.2 |
| MS.gene07660.t1 | AT5G56380 | 32.990 | 194 | 92 | 7 | 9 | 194 | 2 | 165 | 8.98e-13 | 68.2 |
| MS.gene07660.t1 | AT3G58860 | 28.718 | 195 | 110 | 4 | 6 | 196 | 4 | 173 | 1.07e-12 | 67.8 |
| MS.gene07660.t1 | AT3G59210 | 29.439 | 214 | 114 | 6 | 5 | 214 | 3 | 183 | 2.11e-12 | 67.0 |
| MS.gene07660.t1 | AT3G59210 | 29.439 | 214 | 114 | 6 | 5 | 214 | 3 | 183 | 2.11e-12 | 67.0 |
| MS.gene07660.t1 | AT3G59210 | 29.439 | 214 | 114 | 6 | 5 | 214 | 3 | 183 | 2.11e-12 | 67.0 |
| MS.gene07660.t1 | AT3G59210 | 29.439 | 214 | 114 | 6 | 5 | 214 | 3 | 183 | 2.11e-12 | 67.0 |
| MS.gene07660.t1 | AT3G59210 | 29.439 | 214 | 114 | 6 | 5 | 214 | 3 | 183 | 2.11e-12 | 67.0 |
| MS.gene07660.t1 | AT5G56410 | 34.000 | 200 | 106 | 12 | 9 | 200 | 2 | 183 | 4.71e-12 | 65.9 |
| MS.gene07660.t1 | AT3G62440 | 27.885 | 208 | 106 | 7 | 9 | 201 | 2 | 180 | 7.72e-12 | 65.1 |
| MS.gene07660.t1 | AT3G59200 | 28.571 | 217 | 106 | 8 | 8 | 214 | 6 | 183 | 1.26e-11 | 64.3 |
| MS.gene07660.t1 | AT3G50710 | 29.474 | 190 | 99 | 5 | 9 | 193 | 2 | 161 | 1.34e-11 | 64.3 |
| MS.gene07660.t1 | AT5G38570 | 27.273 | 275 | 126 | 9 | 9 | 248 | 2 | 237 | 1.96e-11 | 63.9 |
| MS.gene07660.t1 | AT3G58880 | 30.131 | 229 | 122 | 9 | 9 | 224 | 3 | 206 | 2.00e-11 | 63.9 |
| MS.gene07660.t1 | AT5G38386 | 25.275 | 273 | 153 | 7 | 9 | 253 | 2 | 251 | 2.17e-11 | 63.9 |
| MS.gene07660.t1 | AT5G38386 | 25.275 | 273 | 153 | 7 | 9 | 253 | 2 | 251 | 2.17e-11 | 63.9 |
| MS.gene07660.t1 | AT3G59200 | 29.592 | 196 | 95 | 7 | 8 | 193 | 6 | 168 | 2.48e-11 | 63.9 |
| MS.gene07660.t1 | AT1G78760 | 31.088 | 193 | 92 | 8 | 7 | 193 | 14 | 171 | 7.31e-11 | 62.4 |
Find 49 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGATCAACTCCCATCTTT+TGG | 0.291808 | 4.1:-42395766 | None:intergenic |
| TTTCAATTACCAGAGATTTC+AGG | 0.309929 | 4.1:+42395810 | MS.gene07660:CDS |
| TGCCATGGCAAGTCTTTCTT+AGG | 0.360725 | 4.1:-42398285 | None:intergenic |
| ACTTGTGGTCTTAAAATTGC+GGG | 0.382147 | 4.1:+42396142 | MS.gene07660:CDS |
| ACTTTCTAATGTCAAATCAT+TGG | 0.410912 | 4.1:+42396586 | MS.gene07660:CDS |
| ATATGACAAATCAAATCGTC+TGG | 0.414750 | 4.1:-42395696 | None:intergenic |
| AAAGTGAAGGTTGGGAATCT+TGG | 0.417455 | 4.1:-42395790 | None:intergenic |
| CAAGGTCCAGGAACTTGACT+TGG | 0.426522 | 4.1:+42396064 | MS.gene07660:CDS |
| CAAAATCTTGATAGTGAGAA+AGG | 0.438135 | 4.1:+42395885 | MS.gene07660:CDS |
| GGTAATTGAAAGTGAAGGTT+GGG | 0.443422 | 4.1:-42395798 | None:intergenic |
| ACAAATCCAAGTCAAGTTCC+TGG | 0.445726 | 4.1:-42396070 | None:intergenic |
| CTAAGGCTCGAGAGCGAGAA+AGG | 0.450221 | 4.1:+42395993 | MS.gene07660:CDS |
| TCTTTCCGTTTGTCAGAGTC+CGG | 0.456098 | 4.1:+42396532 | MS.gene07660:CDS |
| ACCCACATGTGTACATCATT+TGG | 0.460055 | 4.1:-42396023 | None:intergenic |
| CATGTGTTCTATCCAAAAGA+TGG | 0.467948 | 4.1:+42395754 | MS.gene07660:CDS |
| TGATTTGTTCGAACAACAAA+GGG | 0.478379 | 4.1:-42395833 | None:intergenic |
| TTCCACTTGTGAGTCACTTG+TGG | 0.484520 | 4.1:+42396127 | MS.gene07660:CDS |
| AACAAAGGGCCTGAAATCTC+TGG | 0.488546 | 4.1:-42395819 | None:intergenic |
| GGCATTAGATCTCAAGGTCC+AGG | 0.496808 | 4.1:+42396052 | MS.gene07660:CDS |
| TGTTCACATGTGGGTTTCAA+AGG | 0.497154 | 4.1:+42395923 | MS.gene07660:CDS |
| GTATACAAACTGTTAAAATC+CGG | 0.506388 | 4.1:-42396551 | None:intergenic |
| CACTTGTGGTCTTAAAATTG+CGG | 0.513373 | 4.1:+42396141 | MS.gene07660:CDS |
| GAAACTTACATGAAATGTGT+TGG | 0.516194 | 4.1:-42396618 | None:intergenic |
| TGTACACATGTGGGTTTCAA+AGG | 0.528762 | 4.1:+42396031 | MS.gene07660:CDS |
| CCGAAAATATAAGAAAACTA+AGG | 0.538047 | 4.1:+42395976 | MS.gene07660:CDS |
| AGTTTGTATACACTCTTGAA+AGG | 0.538294 | 4.1:+42396563 | MS.gene07660:CDS |
| TTCAAAGGCATTAGATCTCA+AGG | 0.542872 | 4.1:+42396046 | MS.gene07660:CDS |
| TGGTAATTGAAAGTGAAGGT+TGG | 0.551378 | 4.1:-42395799 | None:intergenic |
| AATGTCAAATCATTGGCTCT+CGG | 0.552626 | 4.1:+42396593 | MS.gene07660:CDS |
| TTGATTTGTTCGAACAACAA+AGG | 0.557384 | 4.1:-42395834 | None:intergenic |
| AAGAGTAGCTTGATGAACAT+TGG | 0.560729 | 4.1:-42396513 | None:intergenic |
| ATGTGTTCTATCCAAAAGAT+GGG | 0.563690 | 4.1:+42395755 | MS.gene07660:CDS |
| GACCACAAGTGACTCACAAG+TGG | 0.565326 | 4.1:-42396129 | None:intergenic |
| AAAATCCGGACTCTGACAAA+CGG | 0.565558 | 4.1:-42396537 | None:intergenic |
| AGCCTAAGAAAGACTTGCCA+TGG | 0.574985 | 4.1:+42398283 | MS.gene07660:intron |
| TGAAAAGAAGAATTGAGTGT+TGG | 0.588267 | 4.1:-42396176 | None:intergenic |
| AAGAATATATCACAGTTGAT+CGG | 0.588491 | 4.1:-42396232 | None:intergenic |
| ACATGTGTACATCATTTGGC+TGG | 0.590853 | 4.1:-42396019 | None:intergenic |
| TATGACAAATCAAATCGTCT+GGG | 0.606583 | 4.1:-42395695 | None:intergenic |
| ACCACATGATGTTCACATGT+GGG | 0.606890 | 4.1:+42395914 | MS.gene07660:CDS |
| GCCAAATGATGTACACATGT+GGG | 0.612968 | 4.1:+42396022 | MS.gene07660:CDS |
| GGAAAGCCTAAGCGGCAACA+AGG | 0.615818 | 4.1:-42396108 | None:intergenic |
| AACCACATGATGTTCACATG+TGG | 0.644144 | 4.1:+42395913 | MS.gene07660:CDS |
| AGATGAAGAATCTTTAGTGA+CGG | 0.652659 | 4.1:-42396209 | None:intergenic |
| CTTGTGGTCTTAAAATTGCG+GGG | 0.666742 | 4.1:+42396143 | MS.gene07660:CDS |
| AGCCAAATGATGTACACATG+TGG | 0.670458 | 4.1:+42396021 | MS.gene07660:CDS |
| TCACAAGTGGAAAGCCTAAG+CGG | 0.683053 | 4.1:-42396116 | None:intergenic |
| ACCCACATGTGAACATCATG+TGG | 0.693828 | 4.1:-42395915 | None:intergenic |
| TCTCTGGTAATTGAAAGTGA+AGG | 0.696256 | 4.1:-42395803 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATTAATTAATTTGTTTAT+CGG | - | chr4.1:42397008-42397027 | None:intergenic | 10.0% |
| !! | AAATAGGAAAAAATAAAGAA+AGG | - | chr4.1:42396388-42396407 | None:intergenic | 15.0% |
| !! | CAAATTAAGTTAAAGAAATT+GGG | - | chr4.1:42397972-42397991 | None:intergenic | 15.0% |
| !! | TCAAATTAAGTTAAAGAAAT+TGG | - | chr4.1:42397973-42397992 | None:intergenic | 15.0% |
| !!! | TTAACTTAATTTGATTCAAA+AGG | + | chr4.1:42397979-42397998 | MS.gene07660:intron | 15.0% |
| !!! | TTCACAGTTTATTATTTTAT+CGG | + | chr4.1:42396771-42396790 | MS.gene07660:intron | 15.0% |
| !!! | TTTGTTTTCTTATATATTCT+TGG | - | chr4.1:42395869-42395888 | None:intergenic | 15.0% |
| !! | AAAAATGCACACTTAAAAAT+CGG | - | chr4.1:42397867-42397886 | None:intergenic | 20.0% |
| !! | AAGAGATTTCAAAAGATTTA+AGG | + | chr4.1:42397660-42397679 | MS.gene07660:intron | 20.0% |
| !! | TGTTTATTAATTGTGATGTT+TGG | + | chr4.1:42397273-42397292 | MS.gene07660:intron | 20.0% |
| !!! | CAAATTTTAGAAAGAGAAAT+AGG | - | chr4.1:42396404-42396423 | None:intergenic | 20.0% |
| !!! | CCTTAGTTTTCTTATATTTT+CGG | - | chr4.1:42395979-42395998 | None:intergenic | 20.0% |
| !!! | CTTTTTCATTTCTAAGATAA+AGG | + | chr4.1:42397591-42397610 | MS.gene07660:intron | 20.0% |
| !!! | GTTTAACTTTTAAAACTACA+GGG | - | chr4.1:42398159-42398178 | None:intergenic | 20.0% |
| !!! | TGTTTAACTTTTAAAACTAC+AGG | - | chr4.1:42398160-42398179 | None:intergenic | 20.0% |
| !!! | TTACTTTTCATGTAAATCTT+AGG | - | chr4.1:42397641-42397660 | None:intergenic | 20.0% |
| ! | AACTTCAAAGAAGGTTAAAT+TGG | - | chr4.1:42397073-42397092 | None:intergenic | 25.0% |
| ! | AAGAATATATCACAGTTGAT+CGG | - | chr4.1:42396235-42396254 | None:intergenic | 25.0% |
| ! | AATAATGATATTGAACTAGG+TGG | + | chr4.1:42398182-42398201 | MS.gene07660:intron | 25.0% |
| ! | AATATGATAAGCTCAAAATC+TGG | + | chr4.1:42396931-42396950 | MS.gene07660:intron | 25.0% |
| ! | ACCAATAATGATATTGAACT+AGG | + | chr4.1:42398179-42398198 | MS.gene07660:intron | 25.0% |
| ! | ACCTAGTTCAATATCATTAT+TGG | - | chr4.1:42398183-42398202 | None:intergenic | 25.0% |
| ! | ACTTTCTAATGTCAAATCAT+TGG | + | chr4.1:42396586-42396605 | MS.gene07660:CDS | 25.0% |
| ! | ATAAGTTAAGATCATAGAGA+TGG | - | chr4.1:42398241-42398260 | None:intergenic | 25.0% |
| ! | ATATGTGTTACCATTATTCT+CGG | + | chr4.1:42398259-42398278 | MS.gene07660:intron | 25.0% |
| ! | CCGAAAATATAAGAAAACTA+AGG | + | chr4.1:42395976-42395995 | MS.gene07660:CDS | 25.0% |
| ! | GTATACAAACTGTTAAAATC+CGG | - | chr4.1:42396554-42396573 | None:intergenic | 25.0% |
| ! | TTCTATATGATCTAGAAGTT+TGG | + | chr4.1:42397325-42397344 | MS.gene07660:intron | 25.0% |
| ! | TTGAGAATAGAATTGTATCT+GGG | - | chr4.1:42396685-42396704 | None:intergenic | 25.0% |
| !! | CATAGTTGCCAAAATAATTT+TGG | - | chr4.1:42397247-42397266 | None:intergenic | 25.0% |
| !! | CTGTATTGCCAAAATTATTT+TGG | + | chr4.1:42397236-42397255 | MS.gene07660:intron | 25.0% |
| !! | GATCTCAATAATTTTCTATC+TGG | + | chr4.1:42396278-42396297 | MS.gene07660:intron | 25.0% |
| !! | TATAGAAAGACTGAAGTTTT+TGG | - | chr4.1:42397312-42397331 | None:intergenic | 25.0% |
| !! | TTTGCAAACTCATATTTTCT+AGG | - | chr4.1:42396488-42396507 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTCTGATAGATTA+AGG | + | chr4.1:42397687-42397706 | MS.gene07660:intron | 25.0% |
| AAATAAAGTTCCTCCAAATG+TGG | - | chr4.1:42396308-42396327 | None:intergenic | 30.0% | |
| AAATAACCTTGCTCAAGAAT+TGG | + | chr4.1:42398044-42398063 | MS.gene07660:intron | 30.0% | |
| AATAAACAGACACACACATA+GGG | - | chr4.1:42397111-42397130 | None:intergenic | 30.0% | |
| AATCTATCAGAGCAAAAAAC+AGG | - | chr4.1:42397686-42397705 | None:intergenic | 30.0% | |
| ACTTAAAAATCGGAGTTCTA+GGG | - | chr4.1:42397857-42397876 | None:intergenic | 30.0% | |
| AGAAATGAAAAAGTTCTGTC+AGG | - | chr4.1:42397584-42397603 | None:intergenic | 30.0% | |
| AGATGAAGAATCTTTAGTGA+CGG | - | chr4.1:42396212-42396231 | None:intergenic | 30.0% | |
| AGTTTGTATACACTCTTGAA+AGG | + | chr4.1:42396563-42396582 | MS.gene07660:CDS | 30.0% | |
| ATAGAAAGAACTTCAAGTGT+CGG | - | chr4.1:42396446-42396465 | None:intergenic | 30.0% | |
| ATATGACAAATCAAATCGTC+TGG | - | chr4.1:42395699-42395718 | None:intergenic | 30.0% | |
| ATCTTAGGATGTGAACTATT+TGG | - | chr4.1:42397626-42397645 | None:intergenic | 30.0% | |
| ATGTGTTCTATCCAAAAGAT+GGG | + | chr4.1:42395755-42395774 | MS.gene07660:CDS | 30.0% | |
| ATTCCAATGAACTTCAAAGA+AGG | - | chr4.1:42397082-42397101 | None:intergenic | 30.0% | |
| CTTGAGAATAGAATTGTATC+TGG | - | chr4.1:42396686-42396705 | None:intergenic | 30.0% | |
| GAAACTTACATGAAATGTGT+TGG | - | chr4.1:42396621-42396640 | None:intergenic | 30.0% | |
| GACATATTTATCCTAAGCTA+AGG | + | chr4.1:42398210-42398229 | MS.gene07660:intron | 30.0% | |
| TATGACAAATCAAATCGTCT+GGG | - | chr4.1:42395698-42395717 | None:intergenic | 30.0% | |
| TCAAAGAAGGTTAAATTGGT+AGG | - | chr4.1:42397069-42397088 | None:intergenic | 30.0% | |
| TGAAAAGAAGAATTGAGTGT+TGG | - | chr4.1:42396179-42396198 | None:intergenic | 30.0% | |
| TTTCAATTACCAGAGATTTC+AGG | + | chr4.1:42395810-42395829 | MS.gene07660:CDS | 30.0% | |
| ! | GCTTATATCATCTGAAACAT+AGG | - | chr4.1:42397767-42397786 | None:intergenic | 30.0% |
| ! | TAGAAGTTTGGTTGATGTAT+GGG | + | chr4.1:42397337-42397356 | MS.gene07660:intron | 30.0% |
| ! | TATATCATCTGAAACATAGG+AGG | - | chr4.1:42397764-42397783 | None:intergenic | 30.0% |
| !! | CAAAATCTTGATAGTGAGAA+AGG | + | chr4.1:42395885-42395904 | MS.gene07660:CDS | 30.0% |
| !! | TAACCTTCTTTGAAGTTCAT+TGG | + | chr4.1:42397076-42397095 | MS.gene07660:intron | 30.0% |
| !! | TGATTTGTTCGAACAACAAA+GGG | - | chr4.1:42395836-42395855 | None:intergenic | 30.0% |
| !! | TTGATTTGTTCGAACAACAA+AGG | - | chr4.1:42395837-42395856 | None:intergenic | 30.0% |
| AAATATCTGAGAGTTGCAGT+TGG | + | chr4.1:42396797-42396816 | MS.gene07660:intron | 35.0% | |
| AAGAGTAGCTTGATGAACAT+TGG | - | chr4.1:42396516-42396535 | None:intergenic | 35.0% | |
| ACTTACGCATCTTGCAATTA+AGG | + | chr4.1:42396855-42396874 | MS.gene07660:intron | 35.0% | |
| AGATGGAAAAACCTTAGCTT+AGG | - | chr4.1:42398224-42398243 | None:intergenic | 35.0% | |
| AGTTGAAGACAATGCATACA+TGG | + | chr4.1:42398120-42398139 | MS.gene07660:intron | 35.0% | |
| ATAAACAGACACACACATAG+GGG | - | chr4.1:42397110-42397129 | None:intergenic | 35.0% | |
| ATGATATAAGCTGCATTCCA+GGG | + | chr4.1:42397776-42397795 | MS.gene07660:intron | 35.0% | |
| CACTTAAAAATCGGAGTTCT+AGG | - | chr4.1:42397858-42397877 | None:intergenic | 35.0% | |
| CATGTGTTCTATCCAAAAGA+TGG | + | chr4.1:42395754-42395773 | MS.gene07660:CDS | 35.0% | |
| GAATAAACAGACACACACAT+AGG | - | chr4.1:42397112-42397131 | None:intergenic | 35.0% | |
| GGTAATTGAAAGTGAAGGTT+GGG | - | chr4.1:42395801-42395820 | None:intergenic | 35.0% | |
| TAGAAAGAACTTCAAGTGTC+GGG | - | chr4.1:42396445-42396464 | None:intergenic | 35.0% | |
| TCTCTGGTAATTGAAAGTGA+AGG | - | chr4.1:42395806-42395825 | None:intergenic | 35.0% | |
| TCTCTTCAAGAAGTGAAAAG+AGG | - | chr4.1:42396360-42396379 | None:intergenic | 35.0% | |
| TGGTAATTGAAAGTGAAGGT+TGG | - | chr4.1:42395802-42395821 | None:intergenic | 35.0% | |
| TGTATCTGGGTGACAAAATA+TGG | - | chr4.1:42396672-42396691 | None:intergenic | 35.0% | |
| TTGCACTGTGCATTATCAAA+TGG | - | chr4.1:42397936-42397955 | None:intergenic | 35.0% | |
| ! | ACTTGTGGTCTTAAAATTGC+GGG | + | chr4.1:42396142-42396161 | MS.gene07660:CDS | 35.0% |
| ! | ACTTTTCCAATTCTTGAGCA+AGG | - | chr4.1:42398053-42398072 | None:intergenic | 35.0% |
| ! | ATTGCAAGATGCGTAAGTTT+TGG | - | chr4.1:42396853-42396872 | None:intergenic | 35.0% |
| ! | CACTTGTGGTCTTAAAATTG+CGG | + | chr4.1:42396141-42396160 | MS.gene07660:CDS | 35.0% |
| ! | CTAGAAGTTTGGTTGATGTA+TGG | + | chr4.1:42397336-42397355 | MS.gene07660:intron | 35.0% |
| ! | GATATTGAACTAGGTGGTTT+TGG | + | chr4.1:42398188-42398207 | MS.gene07660:intron | 35.0% |
| !! | AATGTCAAATCATTGGCTCT+CGG | + | chr4.1:42396593-42396612 | MS.gene07660:CDS | 35.0% |
| !! | AGTTCTAGGGATTGATAGAA+AGG | - | chr4.1:42397844-42397863 | None:intergenic | 35.0% |
| !! | GAAGTGAAAAGAGGTATTGA+TGG | - | chr4.1:42396351-42396370 | None:intergenic | 35.0% |
| !! | TTCAAAGGCATTAGATCTCA+AGG | + | chr4.1:42396046-42396065 | MS.gene07660:CDS | 35.0% |
| AAAATCCGGACTCTGACAAA+CGG | - | chr4.1:42396540-42396559 | None:intergenic | 40.0% | |
| AAAGTGAAGGTTGGGAATCT+TGG | - | chr4.1:42395793-42395812 | None:intergenic | 40.0% | |
| AACCACATGATGTTCACATG+TGG | + | chr4.1:42395913-42395932 | MS.gene07660:CDS | 40.0% | |
| ACAAATCCAAGTCAAGTTCC+TGG | - | chr4.1:42396073-42396092 | None:intergenic | 40.0% | |
| ACATGTGTACATCATTTGGC+TGG | - | chr4.1:42396022-42396041 | None:intergenic | 40.0% | |
| ACCACATGATGTTCACATGT+GGG | + | chr4.1:42395914-42395933 | MS.gene07660:CDS | 40.0% | |
| ACCCACATGTGTACATCATT+TGG | - | chr4.1:42396026-42396045 | None:intergenic | 40.0% | |
| AGCCAAATGATGTACACATG+TGG | + | chr4.1:42396021-42396040 | MS.gene07660:CDS | 40.0% | |
| GAAGACAATGCATACATGGA+GGG | + | chr4.1:42398124-42398143 | MS.gene07660:intron | 40.0% | |
| GATGATATAAGCTGCATTCC+AGG | + | chr4.1:42397775-42397794 | MS.gene07660:intron | 40.0% | |
| GCCAAATGATGTACACATGT+GGG | + | chr4.1:42396022-42396041 | MS.gene07660:CDS | 40.0% | |
| TAAAGCACACACAACACAAG+TGG | - | chr4.1:42397205-42397224 | None:intergenic | 40.0% | |
| TCTATCTGGTTGTCCACATT+TGG | + | chr4.1:42396292-42396311 | MS.gene07660:intron | 40.0% | |
| TGAAGACAATGCATACATGG+AGG | + | chr4.1:42398123-42398142 | MS.gene07660:intron | 40.0% | |
| TGACACACATAACACATGCA+AGG | + | chr4.1:42397721-42397740 | MS.gene07660:intron | 40.0% | |
| TGATATAAGCTGCATTCCAG+GGG | + | chr4.1:42397777-42397796 | MS.gene07660:intron | 40.0% | |
| TGTACACATGTGGGTTTCAA+AGG | + | chr4.1:42396031-42396050 | MS.gene07660:CDS | 40.0% | |
| TGTTCACATGTGGGTTTCAA+AGG | + | chr4.1:42395923-42395942 | MS.gene07660:CDS | 40.0% | |
| ! | AAAAAACCTTGTTGCCGCTT+AGG | + | chr4.1:42396102-42396121 | MS.gene07660:CDS | 40.0% |
| ! | AGAAAGAACTTCAAGTGTCG+GGG | - | chr4.1:42396444-42396463 | None:intergenic | 40.0% |
| ! | AGGGATTGATAGAAAGGTGT+TGG | - | chr4.1:42397838-42397857 | None:intergenic | 40.0% |
| ! | CTTGTGGTCTTAAAATTGCG+GGG | + | chr4.1:42396143-42396162 | MS.gene07660:CDS | 40.0% |
| ! | GTCGGGGTATTAATTTCTAC+TGG | - | chr4.1:42396428-42396447 | None:intergenic | 40.0% |
| !! | GGTATTGATGGCTATTCGAA+AGG | - | chr4.1:42396339-42396358 | None:intergenic | 40.0% |
| !! | TGATAGAAAGGTGTTGGTGT+TGG | - | chr4.1:42397832-42397851 | None:intergenic | 40.0% |
| AACAAAGGGCCTGAAATCTC+TGG | - | chr4.1:42395822-42395841 | None:intergenic | 45.0% | |
| AATTCACTTCCTTACTCCCC+TGG | - | chr4.1:42397796-42397815 | None:intergenic | 45.0% | |
| ACCCACATGTGAACATCATG+TGG | - | chr4.1:42395918-42395937 | None:intergenic | 45.0% | |
| AGCCTAAGAAAGACTTGCCA+TGG | + | chr4.1:42398283-42398302 | MS.gene07660:intron | 45.0% | |
| ATCTGGTTGTCCACATTTGG+AGG | + | chr4.1:42396295-42396314 | MS.gene07660:intron | 45.0% | |
| GCACAAGAAGAGCAAAGACT+TGG | + | chr4.1:42396953-42396972 | MS.gene07660:intron | 45.0% | |
| GTATGCTCTAACTGCTTGTG+TGG | + | chr4.1:42397149-42397168 | MS.gene07660:intron | 45.0% | |
| TCACAAGTGGAAAGCCTAAG+CGG | - | chr4.1:42396119-42396138 | None:intergenic | 45.0% | |
| TCTCACTCACACTCAGATTG+TGG | - | chr4.1:42397380-42397399 | None:intergenic | 45.0% | |
| TCTTAGGCTGCCGAGAATAA+TGG | - | chr4.1:42398272-42398291 | None:intergenic | 45.0% | |
| TCTTTCCGTTTGTCAGAGTC+CGG | + | chr4.1:42396532-42396551 | MS.gene07660:CDS | 45.0% | |
| TGCCATGGCAAGTCTTTCTT+AGG | - | chr4.1:42398288-42398307 | None:intergenic | 45.0% | |
| TGTCATGCAGTTTCTCAGCA+TGG | + | chr4.1:42396715-42396734 | MS.gene07660:intron | 45.0% | |
| TTCCACTTGTGAGTCACTTG+TGG | + | chr4.1:42396127-42396146 | MS.gene07660:CDS | 45.0% | |
| ! | GCAGATCAACTCCCATCTTT+TGG | - | chr4.1:42395769-42395788 | None:intergenic | 45.0% |
| !!! | GCGGCAACAAGGTTTTTTCA+TGG | - | chr4.1:42396100-42396119 | None:intergenic | 45.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr4.1:42397397-42397416 | MS.gene07660:intron | 50.0% | |
| CAAGGTCCAGGAACTTGACT+TGG | + | chr4.1:42396064-42396083 | MS.gene07660:CDS | 50.0% | |
| CATGCAGTTTCTCAGCATGG+AGG | + | chr4.1:42396718-42396737 | MS.gene07660:intron | 50.0% | |
| GACCACAAGTGACTCACAAG+TGG | - | chr4.1:42396132-42396151 | None:intergenic | 50.0% | |
| GGCATTAGATCTCAAGGTCC+AGG | + | chr4.1:42396052-42396071 | MS.gene07660:CDS | 50.0% | |
| AGCTGCATTCCAGGGGAGTA+AGG | + | chr4.1:42397784-42397803 | MS.gene07660:intron | 55.0% | |
| CTAAGGCTCGAGAGCGAGAA+AGG | + | chr4.1:42395993-42396012 | MS.gene07660:CDS | 55.0% | |
| GGAAAGCCTAAGCGGCAACA+AGG | - | chr4.1:42396111-42396130 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 42395654 | 42398311 | 42395654 | ID=MS.gene07660 |
| chr4.1 | mRNA | 42395654 | 42398311 | 42395654 | ID=MS.gene07660.t1;Parent=MS.gene07660 |
| chr4.1 | exon | 42395654 | 42396273 | 42395654 | ID=MS.gene07660.t1.exon1;Parent=MS.gene07660.t1 |
| chr4.1 | CDS | 42395654 | 42396273 | 42395654 | ID=cds.MS.gene07660.t1;Parent=MS.gene07660.t1 |
| chr4.1 | exon | 42396490 | 42396631 | 42396490 | ID=MS.gene07660.t1.exon2;Parent=MS.gene07660.t1 |
| chr4.1 | CDS | 42396490 | 42396631 | 42396490 | ID=cds.MS.gene07660.t1;Parent=MS.gene07660.t1 |
| chr4.1 | exon | 42398285 | 42398311 | 42398285 | ID=MS.gene07660.t1.exon3;Parent=MS.gene07660.t1 |
| chr4.1 | CDS | 42398285 | 42398311 | 42398285 | ID=cds.MS.gene07660.t1;Parent=MS.gene07660.t1 |
| Gene Sequence |
| Protein sequence |
