AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91201


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91201.t1 MTR_4g055990 95.407 479 21 1 37 514 1 479 0.0 914
MS.gene91201.t1 MTR_4g055990 95.407 479 21 1 37 514 1 479 0.0 913
MS.gene91201.t1 MTR_4g055580 84.134 479 71 1 36 514 91 564 0.0 791
MS.gene91201.t1 MTR_4g056040 79.749 479 84 5 37 514 1 467 0.0 751
MS.gene91201.t1 MTR_4g056020 80.585 479 50 4 37 514 1 437 0.0 749
MS.gene91201.t1 MTR_4g056070 81.900 442 71 3 37 474 1 437 0.0 718
MS.gene91201.t1 MTR_4g056030 75.992 479 72 4 37 514 1 437 0.0 706
MS.gene91201.t1 MTR_1g038710 62.372 489 133 6 33 514 7 451 0.0 546
MS.gene91201.t1 MTR_1g090883 57.761 393 124 6 38 427 12 365 7.17e-138 403
MS.gene91201.t1 MTR_7g110920 56.145 358 104 5 172 514 1 320 1.10e-120 357
MS.gene91201.t1 MTR_4g056020 82.877 146 20 1 369 514 1 141 5.96e-78 241
MS.gene91201.t1 MTR_4g093690 48.553 311 113 7 35 340 8 276 1.53e-74 237
MS.gene91201.t1 MTR_4g056010 91.000 100 9 0 141 240 1 100 1.60e-57 186
MS.gene91201.t1 MTR_1g090900 53.271 214 60 4 37 247 1 177 3.44e-55 184
MS.gene91201.t1 MTR_1g090890 63.333 90 27 2 428 514 30 116 3.11e-29 111
MS.gene91201.t1 MTR_5g084070 29.870 462 244 16 41 493 9 399 1.45e-26 112
MS.gene91201.t1 MTR_7g115270 25.840 476 239 14 45 506 12 387 2.63e-24 105
MS.gene91201.t1 MTR_7g056433 27.412 456 218 17 40 488 7 356 3.60e-24 104
MS.gene91201.t1 MTR_8g062270 26.293 464 267 16 45 488 16 424 4.49e-24 105
MS.gene91201.t1 MTR_5g080710 28.687 495 256 19 23 493 4 425 5.43e-24 105
MS.gene91201.t1 MTR_8g014260 26.223 511 258 15 42 511 13 445 5.10e-23 102
MS.gene91201.t1 MTR_8g467800 28.970 466 253 18 31 477 6 412 1.38e-22 100
MS.gene91201.t1 MTR_2g007400 26.087 483 242 22 45 510 12 396 4.42e-22 99.0
MS.gene91201.t1 MTR_8g445780 27.130 446 239 14 45 473 13 389 9.57e-21 94.7
MS.gene91201.t1 MTR_8g058970 26.176 489 286 18 40 500 14 455 1.35e-20 95.1
MS.gene91201.t1 MTR_3g108560 27.692 455 206 20 42 488 17 356 1.59e-19 90.9
MS.gene91201.t1 MTR_8g468840 26.134 463 267 18 45 488 14 420 8.43e-19 89.4
MS.gene91201.t1 MTR_8g468810 26.824 466 267 18 40 488 20 428 7.27e-18 86.7
MS.gene91201.t1 MTR_8g014160 29.683 347 178 12 40 366 36 336 1.45e-17 85.5
MS.gene91201.t1 MTR_8g467800 30.117 342 173 12 41 366 16 307 3.60e-16 80.5
MS.gene91201.t1 MTR_5g058100 25.265 471 236 18 37 500 1 362 3.84e-16 80.5
MS.gene91201.t1 MTR_4g080773 26.230 488 277 19 30 488 1 434 5.43e-16 80.9
MS.gene91201.t1 MTR_4g080773 26.380 489 275 20 30 488 1 434 7.47e-16 80.5
MS.gene91201.t1 MTR_6g011460 27.252 433 250 17 45 464 46 426 1.34e-15 79.3
MS.gene91201.t1 MTR_8g058965 26.403 481 249 19 45 489 13 424 1.49e-15 79.3
MS.gene91201.t1 MTR_8g468810 28.274 336 182 14 40 362 20 309 7.48e-14 73.2
MS.gene91201.t1 MTR_8g468810 28.274 336 182 14 40 362 20 309 7.76e-14 73.2
MS.gene91201.t1 MTR_8g468810 28.274 336 182 14 40 362 20 309 8.18e-14 73.2
MS.gene91201.t1 MTR_3g109982 25.407 492 261 17 43 488 11 442 9.44e-14 74.3
MS.gene91201.t1 MTR_8g062310 30.081 246 118 10 45 286 25 220 1.00e-13 73.6
MS.gene91201.t1 MTR_8g468810 28.274 336 182 14 40 362 20 309 1.54e-13 72.8
MS.gene91201.t1 MTR_1g085120 26.281 449 224 23 45 488 92 438 1.63e-13 73.2
MS.gene91201.t1 MTR_1g085120 26.281 449 224 23 45 488 167 513 2.58e-13 72.8
MS.gene91201.t1 MTR_4g039440 24.319 477 238 19 45 511 34 397 5.23e-13 71.2
MS.gene91201.t1 MTR_6g022390 32.911 158 81 6 45 202 5 137 1.31e-12 65.9
MS.gene91201.t1 MTR_4g080787 24.853 511 280 23 30 504 1 443 1.46e-12 70.1
MS.gene91201.t1 MTR_1g085120 32.287 223 109 12 45 266 179 360 1.71e-12 70.1
MS.gene91201.t1 MTR_3g048290 24.740 481 262 18 41 488 19 432 2.15e-12 69.7
MS.gene91201.t1 MTR_5g008950 32.432 111 65 2 383 490 233 336 7.89e-12 67.4
MS.gene91201.t1 MTR_3g023630 22.545 448 233 14 45 488 8 345 1.11e-11 67.0
MS.gene91201.t1 MTR_5g045170 30.222 225 107 10 47 266 16 195 2.33e-11 65.9
MS.gene91201.t1 MTR_3g108560 32.159 227 101 11 42 266 17 192 7.14e-11 63.9
MS.gene91201.t1 MTR_7g110910 57.407 54 23 0 21 74 142 195 8.12e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91201.t1 AT5G38396 28.392 479 252 18 45 489 2 423 2.32e-26 112
MS.gene91201.t1 AT4G00315 27.975 479 262 21 45 499 2 421 3.53e-26 111
MS.gene91201.t1 AT5G62970 31.957 460 257 25 45 492 2 417 4.34e-26 111
MS.gene91201.t1 AT2G26860 28.758 459 256 16 45 492 2 400 6.04e-26 110
MS.gene91201.t1 AT2G26860 28.758 459 256 16 45 492 2 400 6.04e-26 110
MS.gene91201.t1 AT4G14103 28.706 425 214 17 45 436 8 376 2.89e-25 108
MS.gene91201.t1 AT3G59160 27.603 413 224 14 45 417 13 390 1.15e-24 107
MS.gene91201.t1 AT4G14103 28.500 400 203 15 45 416 8 352 3.65e-24 104
MS.gene91201.t1 AT4G14103 28.500 400 203 15 45 416 8 352 3.65e-24 104
MS.gene91201.t1 AT3G50710 27.350 468 249 16 45 493 2 397 5.48e-24 104
MS.gene91201.t1 AT4G10400 26.608 451 250 15 45 488 2 378 7.12e-24 104
MS.gene91201.t1 AT4G10400 26.608 451 250 15 45 488 2 378 7.12e-24 104
MS.gene91201.t1 AT4G10400 26.608 451 250 15 45 488 2 378 7.12e-24 104
MS.gene91201.t1 AT4G00320 27.970 404 227 12 39 417 7 371 7.70e-24 105
MS.gene91201.t1 AT4G26340 28.261 460 238 21 45 487 2 386 1.25e-23 103
MS.gene91201.t1 AT3G59190 27.901 405 218 11 45 420 12 371 1.78e-23 102
MS.gene91201.t1 AT5G56380 28.384 458 236 16 45 476 2 393 1.84e-23 103
MS.gene91201.t1 AT5G56380 28.384 458 236 16 45 476 2 393 1.84e-23 103
MS.gene91201.t1 AT3G59190 28.049 410 220 12 45 425 12 375 4.16e-23 103
MS.gene91201.t1 AT1G55660 26.981 467 260 21 45 489 53 460 9.86e-23 101
MS.gene91201.t1 AT5G41830 28.605 430 228 14 39 438 7 387 2.15e-22 100
MS.gene91201.t1 AT4G14096 26.841 421 223 15 44 436 7 370 2.61e-22 100
MS.gene91201.t1 AT4G14096 26.841 421 223 15 44 436 7 370 2.61e-22 100
MS.gene91201.t1 AT3G59230 26.559 497 282 13 45 508 12 458 4.59e-22 99.8
MS.gene91201.t1 AT5G41840 28.186 408 220 11 45 417 14 383 4.99e-22 99.8
MS.gene91201.t1 AT1G51370 27.176 471 253 19 43 497 17 413 5.80e-22 99.0
MS.gene91201.t1 AT1G58310 28.822 399 227 13 45 417 8 375 9.54e-22 99.0
MS.gene91201.t1 AT5G38590 25.821 457 255 14 45 490 2 385 2.53e-21 96.7
MS.gene91201.t1 AT4G13965 28.112 466 247 24 45 496 10 401 3.26e-21 96.7
MS.gene91201.t1 AT5G60610 27.948 458 243 19 45 488 2 386 4.33e-21 95.5
MS.gene91201.t1 AT5G60610 27.948 458 243 19 45 488 2 386 4.33e-21 95.5
MS.gene91201.t1 AT3G03030 27.536 414 226 12 45 425 2 374 6.83e-21 95.9
MS.gene91201.t1 AT4G13960 26.582 474 260 14 45 489 2 416 9.17e-21 95.5
MS.gene91201.t1 AT4G13960 26.582 474 260 14 45 489 2 416 9.17e-21 95.5
MS.gene91201.t1 AT3G59170 27.451 408 234 14 45 417 7 387 1.11e-20 95.5
MS.gene91201.t1 AT4G26350 24.353 464 263 15 45 489 2 396 2.17e-20 94.0
MS.gene91201.t1 AT3G59200 26.699 412 215 13 44 420 6 365 1.19e-19 90.9
MS.gene91201.t1 AT2G26030 26.609 466 260 19 45 486 4 411 3.03e-19 90.9
MS.gene91201.t1 AT4G22280 29.231 390 203 15 45 420 2 332 3.91e-19 89.0
MS.gene91201.t1 AT3G59210 27.861 402 218 13 41 417 3 357 4.89e-19 90.5
MS.gene91201.t1 AT3G59210 27.861 402 218 13 41 417 3 357 4.89e-19 90.5
MS.gene91201.t1 AT3G59210 27.861 402 218 13 41 417 3 357 4.89e-19 90.5
MS.gene91201.t1 AT3G59210 27.861 402 218 13 41 417 3 357 4.89e-19 90.5
MS.gene91201.t1 AT3G59210 27.861 402 218 13 41 417 3 357 4.89e-19 90.5
MS.gene91201.t1 AT4G22280 28.643 398 211 14 45 428 2 340 5.08e-19 89.7
MS.gene91201.t1 AT1G52650 26.875 480 250 17 45 488 2 416 5.78e-19 90.1
MS.gene91201.t1 AT3G58880 25.959 443 252 14 45 462 3 394 6.58e-19 89.7
MS.gene91201.t1 AT3G59200 25.893 448 238 14 44 456 6 394 1.13e-18 89.4
MS.gene91201.t1 AT3G58920 27.833 406 219 14 45 418 2 365 1.82e-18 88.6
MS.gene91201.t1 AT3G62430 28.392 398 203 16 45 418 2 341 2.73e-18 87.8
MS.gene91201.t1 AT1G32375 27.101 476 249 19 45 500 2 399 2.89e-18 87.4
MS.gene91201.t1 AT1G32375 27.101 476 249 19 45 500 2 399 2.89e-18 87.4
MS.gene91201.t1 AT3G58960 26.914 405 212 13 45 419 2 352 3.59e-18 87.8
MS.gene91201.t1 AT5G56370 26.947 475 268 18 45 512 2 404 4.64e-18 87.0
MS.gene91201.t1 AT5G56370 26.947 475 268 18 45 512 2 404 4.64e-18 87.0
MS.gene91201.t1 AT3G03040 27.407 405 210 12 45 416 2 355 5.25e-18 87.0
MS.gene91201.t1 AT3G52680 26.360 478 231 18 45 490 21 409 1.02e-17 86.3
MS.gene91201.t1 AT4G10420 27.557 352 205 11 172 510 1 315 1.06e-17 84.7
MS.gene91201.t1 AT2G26030 26.180 466 257 19 45 486 4 406 1.06e-17 85.9
MS.gene91201.t1 AT2G26030 26.180 466 257 19 45 486 4 406 1.06e-17 85.9
MS.gene91201.t1 AT3G03030 27.684 354 187 9 45 368 2 316 1.64e-17 84.3
MS.gene91201.t1 AT3G58900 29.484 407 204 15 45 418 2 358 1.73e-17 85.5
MS.gene91201.t1 AT3G58860 26.269 453 255 15 42 472 4 399 2.12e-17 85.1
MS.gene91201.t1 AT1G06630 28.535 389 216 15 44 418 11 351 2.24e-17 84.7
MS.gene91201.t1 AT1G06630 28.535 389 216 15 44 418 11 351 2.24e-17 84.7
MS.gene91201.t1 AT1G06630 28.535 389 216 15 44 418 11 351 2.24e-17 84.7
MS.gene91201.t1 AT1G06630 28.535 389 216 15 44 418 11 351 2.24e-17 84.7
MS.gene91201.t1 AT3G59180 28.042 378 212 17 137 471 33 393 3.09e-17 84.7
MS.gene91201.t1 AT1G06630 28.148 405 229 15 28 418 4 360 3.11e-17 84.3
MS.gene91201.t1 AT5G56700 29.692 357 204 15 148 490 29 352 3.26e-17 83.6
MS.gene91201.t1 AT1G55660 27.976 336 178 14 45 362 53 342 3.85e-17 83.6
MS.gene91201.t1 AT1G51370 27.419 434 226 18 43 461 17 376 3.89e-17 84.0
MS.gene91201.t1 AT1G06630 28.535 389 216 15 44 418 11 351 4.34e-17 84.3
MS.gene91201.t1 AT5G56400 25.690 471 240 21 45 488 33 420 7.19e-17 83.6
MS.gene91201.t1 AT1G78760 26.598 485 246 22 43 496 14 419 2.12e-16 82.0
MS.gene91201.t1 AT1G55030 25.918 463 264 20 45 498 19 411 2.25e-16 81.6
MS.gene91201.t1 AT5G56410 28.092 477 271 22 45 502 2 425 2.42e-16 82.0
MS.gene91201.t1 AT1G55030 25.910 467 259 21 45 498 9 401 2.53e-16 81.6
MS.gene91201.t1 AT3G26930 26.711 453 255 18 43 486 19 403 3.03e-16 81.6
MS.gene91201.t1 AT5G38386 24.130 460 235 15 45 488 2 363 4.13e-16 80.9
MS.gene91201.t1 AT5G38386 24.130 460 235 15 45 488 2 363 4.13e-16 80.9
MS.gene91201.t1 AT1G51370 31.739 230 106 8 43 271 17 196 4.75e-16 80.1
MS.gene91201.t1 AT3G42770 29.448 326 183 12 50 366 4 291 6.23e-16 80.9
MS.gene91201.t1 AT5G22670 26.611 481 258 21 44 500 10 419 8.23e-16 80.1
MS.gene91201.t1 AT5G53840 25.806 465 252 19 43 488 16 406 1.51e-15 79.3
MS.gene91201.t1 AT4G15060 26.290 407 208 17 42 421 23 364 1.65e-15 79.0
MS.gene91201.t1 AT2G29930 27.861 402 196 19 45 418 12 347 1.73e-15 79.3
MS.gene91201.t1 AT2G29930 27.861 402 196 19 45 418 12 347 1.73e-15 79.3
MS.gene91201.t1 AT2G42720 28.230 418 202 20 45 425 2 358 2.45e-15 78.6
MS.gene91201.t1 AT3G59240 26.087 391 224 13 45 417 8 351 2.90e-15 79.0
MS.gene91201.t1 AT3G26930 28.618 304 182 13 191 485 80 357 3.74e-15 77.8
MS.gene91201.t1 AT5G22700 24.547 497 261 20 25 485 23 441 5.76e-15 77.8
MS.gene91201.t1 AT1G66310 26.263 495 268 20 40 510 14 435 5.92e-15 77.4
MS.gene91201.t1 AT1G78750 25.183 409 235 15 35 419 8 369 6.79e-15 77.4
MS.gene91201.t1 AT1G78750 25.183 409 235 15 35 419 8 369 6.79e-15 77.4
MS.gene91201.t1 AT2G42730 25.216 464 277 16 45 488 5 418 9.00e-15 77.0
MS.gene91201.t1 AT3G56780 24.046 524 281 19 47 513 9 472 9.14e-15 77.0
MS.gene91201.t1 AT3G49030 26.059 472 258 19 43 499 19 414 1.06e-14 76.6
MS.gene91201.t1 AT4G15060 27.616 344 172 14 45 366 172 460 1.33e-14 76.6
MS.gene91201.t1 AT1G05080 26.782 463 255 19 44 488 12 408 1.44e-14 76.3
MS.gene91201.t1 AT3G58900 29.805 359 173 14 45 370 2 314 1.66e-14 75.1
MS.gene91201.t1 AT3G58900 30.028 363 173 15 45 372 2 318 2.00e-14 74.7
MS.gene91201.t1 AT3G58900 30.028 363 173 15 45 372 2 318 2.00e-14 74.7
MS.gene91201.t1 AT1G66300 25.692 506 271 21 39 510 15 449 2.11e-14 75.9
MS.gene91201.t1 AT5G56690 28.698 453 255 18 47 488 4 399 2.49e-14 75.5
MS.gene91201.t1 AT1G69630 25.000 408 228 13 35 418 8 361 2.90e-14 75.5
MS.gene91201.t1 AT5G22700 24.843 479 246 20 43 485 4 404 4.10e-14 74.7
MS.gene91201.t1 AT5G22700 24.843 479 246 20 43 485 4 404 4.10e-14 74.7
MS.gene91201.t1 AT5G22700 24.843 479 246 20 43 485 4 404 4.10e-14 74.7
MS.gene91201.t1 AT5G22700 24.843 479 246 20 43 485 4 404 4.10e-14 74.7
MS.gene91201.t1 AT5G25860 26.485 404 230 18 45 425 12 371 4.44e-14 74.7
MS.gene91201.t1 AT1G13780 24.025 487 249 21 45 486 10 420 9.14e-14 73.9
MS.gene91201.t1 AT5G56820 23.605 466 258 17 45 496 15 396 1.37e-13 73.2
MS.gene91201.t1 AT3G26920 24.242 363 233 12 164 512 4 338 2.18e-13 72.0
MS.gene91201.t1 AT3G26920 24.242 363 233 12 164 512 4 338 2.18e-13 72.0
MS.gene91201.t1 AT5G44950 24.793 484 270 18 45 502 4 419 4.28e-13 71.6
MS.gene91201.t1 AT4G09920 26.140 329 188 9 45 367 2 281 6.10e-13 70.1
MS.gene91201.t1 AT4G09920 26.140 329 188 9 45 367 2 281 6.10e-13 70.1
MS.gene91201.t1 AT5G38392 31.950 241 109 10 45 272 2 200 6.18e-13 68.6
MS.gene91201.t1 AT5G53635 25.410 488 262 22 47 499 2 422 8.19e-13 70.9
MS.gene91201.t1 AT1G48400 24.186 430 232 13 45 425 10 394 8.48e-13 70.9
MS.gene91201.t1 AT1G66290 25.370 473 254 18 40 488 24 421 9.77e-13 70.5
MS.gene91201.t1 AT3G54160 28.135 327 196 11 113 418 22 330 1.32e-12 70.1
MS.gene91201.t1 AT4G09920 26.220 328 187 9 45 366 2 280 2.09e-12 68.2
MS.gene91201.t1 AT4G09920 26.220 328 187 9 45 366 2 280 2.09e-12 68.2
MS.gene91201.t1 AT4G09920 26.220 328 187 9 45 366 2 280 2.09e-12 68.2
MS.gene91201.t1 AT5G35995 25.366 410 217 17 45 425 5 354 2.82e-12 69.3
MS.gene91201.t1 AT5G35995 25.366 410 217 17 45 425 5 354 2.82e-12 69.3
MS.gene91201.t1 AT5G22700 28.000 250 119 9 25 266 23 219 7.15e-12 67.8
MS.gene91201.t1 AT2G29930 33.061 245 107 15 199 418 15 227 1.63e-11 66.2
MS.gene91201.t1 AT3G60040 25.260 384 244 13 45 418 13 363 4.13e-11 65.9
MS.gene91201.t1 AT3G60040 25.260 384 244 13 45 418 230 580 5.48e-11 65.5
MS.gene91201.t1 AT3G60040 25.260 384 244 13 45 418 232 582 5.49e-11 65.5
MS.gene91201.t1 AT3G60040 25.260 384 244 13 45 418 233 583 5.74e-11 65.9
MS.gene91201.t1 AT3G60040 25.260 384 244 13 45 418 232 582 6.05e-11 65.5
MS.gene91201.t1 AT1G66320 26.510 298 179 13 144 418 91 371 9.03e-11 64.7

Find 91 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTACATTTGAATTTAA+AGG 0.124626 4.1:-42104202 MS.gene91201:CDS
TGAAGATTTGATTTCTTCTT+TGG 0.167215 4.1:+42105679 None:intergenic
CAATGTTCATGGATTCTAAA+TGG 0.243177 4.1:-42106582 MS.gene91201:CDS
AGAAATCCTCCTTACTAGTA+TGG 0.246783 4.1:-42104045 MS.gene91201:CDS
CTAAGGCTTGATAGCGAAAA+AGG 0.263082 4.1:-42105509 MS.gene91201:CDS
ATTGCAAGATCCTTAAGTTT+TGG 0.285282 4.1:+42104652 None:intergenic
GCAGATCGACTCCCATCTTT+TGG 0.302315 4.1:+42105757 None:intergenic
TCTATCTGGTTGTCCACATT+TGG 0.307537 4.1:-42105210 MS.gene91201:CDS
CTATATTCTCGGAGCGTCTT+TGG 0.336573 4.1:+42105645 None:intergenic
GTTTCCAACCTCCTCTCTTC+GGG 0.354469 4.1:+42104273 None:intergenic
TATTAGTTTGCCTATATTCT+CGG 0.378070 4.1:+42105634 None:intergenic
AGTTTCCAACCTCCTCTCTT+CGG 0.390900 4.1:+42104272 None:intergenic
GACAATGGTAGCAATGTTCA+TGG 0.397699 4.1:-42106593 None:intergenic
TTTACTCAGGTGTTCAGCTC+AGG 0.398055 4.1:-42105894 MS.gene91201:CDS
ACTCGTGGTCTTAAAATTGC+GGG 0.408358 4.1:-42105360 MS.gene91201:CDS
TTTCTCTGATACCAAGTTCA+AGG 0.409782 4.1:+42106518 None:intergenic
CAAAGACGCTCCGAGAATAT+AGG 0.415150 4.1:-42105644 MS.gene91201:CDS
AAAGTGAAGGTTGGGAATCT+TGG 0.417455 4.1:+42105733 None:intergenic
TTATACAAATTGTTAAAATC+CGG 0.418633 4.1:+42104954 None:intergenic
ACAGATCCAAGTCAAGTTCC+TGG 0.422138 4.1:+42105432 None:intergenic
ACAGAATGCTCCAAAACTTA+AGG 0.424972 4.1:-42104662 MS.gene91201:CDS
ATCTGGTTGTCCACATTTGG+AGG 0.433975 4.1:-42105207 MS.gene91201:CDS
ATTTCTTCTTTGGACATCAC+AGG 0.436128 4.1:+42105689 None:intergenic
AGGAGGTTGGAAACTCTAGA+TGG 0.436425 4.1:-42104264 MS.gene91201:CDS
TCAAAATATTAAAACTGAGT+TGG 0.440622 4.1:-42104176 MS.gene91201:CDS
GGTAATTGAAAGTGAAGGTT+GGG 0.443422 4.1:+42105725 None:intergenic
AATGTTCATGGATTCTAAAT+GGG 0.451545 4.1:-42106581 MS.gene91201:CDS
CAAGGTCCAGGAACTTGACT+TGG 0.457085 4.1:-42105438 MS.gene91201:CDS
ACTAATACTTGACAGTAAGA+TGG 0.466673 4.1:-42105618 MS.gene91201:CDS
AAATTCAAATGTAATGAGAC+TGG 0.466724 4.1:+42104207 None:intergenic
CATGTGTTCTATCCAAAAGA+TGG 0.467948 4.1:-42105769 MS.gene91201:CDS
GTGACTCACACGTGGAAAGC+TGG 0.470578 4.1:+42105381 None:intergenic
TCTTTGCATTTGCAAGCGTC+CGG 0.481989 4.1:-42104973 MS.gene91201:CDS
GCCACATGATGTACACTTGT+GGG 0.485379 4.1:-42105588 MS.gene91201:CDS
AAGGATCTTGCAATTGCGGT+TGG 0.485603 4.1:-42104643 MS.gene91201:CDS
AATTTGTATAAACTCTTGAA+AGG 0.493831 4.1:-42104942 MS.gene91201:CDS
AAGTAGGCATATATAACAAA+AGG 0.493857 4.1:+42105117 None:intergenic
ACTTAAGGATCTTGCAATTG+CGG 0.496044 4.1:-42104647 MS.gene91201:CDS
GGCATTAGATCTCAAGGTCC+AGG 0.496808 4.1:-42105450 MS.gene91201:CDS
TGTACACTTGTGGGTTTCAA+AGG 0.503354 4.1:-42105579 MS.gene91201:CDS
CTAATACTTGACAGTAAGAT+GGG 0.504263 4.1:-42105617 MS.gene91201:CDS
AAATGTGAAAACCTTGAACT+TGG 0.511512 4.1:-42106529 MS.gene91201:intron
TAGAATACGCCACAGTTTCA+CGG 0.516230 4.1:+42105270 None:intergenic
GAAATCCTCCTTACTAGTAT+GGG 0.519980 4.1:-42104044 None:intergenic
ACTTCGTACCCATACTAGTA+AGG 0.520038 4.1:+42104036 None:intergenic
TCTCTTCAATAAGTGAAAAG+AGG 0.524063 4.1:+42105145 None:intergenic
TGTACACATGTGGGTTTCAA+AGG 0.528762 4.1:-42105471 MS.gene91201:CDS
ATCACAGGGTCTGAAATCTC+TGG 0.529937 4.1:+42105704 None:intergenic
CCGAAAATATAAGAAAACTA+AGG 0.538047 4.1:-42105526 MS.gene91201:CDS
CACTCGTGGTCTTAAAATTG+CGG 0.539007 4.1:-42105361 MS.gene91201:CDS
TTCAAAGGCATTAGATCTCA+AGG 0.542872 4.1:-42105456 MS.gene91201:CDS
AATGTCAAAACATTGGCTCT+CGG 0.545588 4.1:-42104912 MS.gene91201:CDS
TTTCTTCTTTGGACATCACA+GGG 0.548590 4.1:+42105690 None:intergenic
TGGTAATTGAAAGTGAAGGT+TGG 0.551378 4.1:+42105724 None:intergenic
TGTTATGCAGTTTCTCAGCA+TGG 0.553413 4.1:-42104788 MS.gene91201:intron
TGAAATCAATTCCCGAAGAG+AGG 0.556742 4.1:-42104284 MS.gene91201:CDS
ATGTGTTCTATCCAAAAGAT+GGG 0.563690 4.1:-42105768 MS.gene91201:CDS
ATCATGTCATAGCTTTACTC+AGG 0.565108 4.1:-42105907 MS.gene91201:intron
GACGGGGCATTAATTTGTAG+TGG 0.566180 4.1:+42105080 None:intergenic
ACTTTCTAATGTCAAAACAT+TGG 0.567332 4.1:-42104919 MS.gene91201:CDS
CAGGTGTTCAGCTCAGGTCA+TGG 0.572339 4.1:-42105888 MS.gene91201:CDS
GGACAACACTTAATAGAAGT+AGG 0.574171 4.1:+42105101 None:intergenic
AAATATCTGAGAATTGCAGT+TGG 0.586019 4.1:-42104705 MS.gene91201:CDS
TGAAAAGAAGAATTGAGTGT+TGG 0.588267 4.1:+42105326 None:intergenic
AGACTGGTTGTAAGACATGC+CGG 0.589947 4.1:+42104223 None:intergenic
AAGTGAAAAGAGGTGTTGAT+CGG 0.590271 4.1:+42105155 None:intergenic
AAGAGCAGCTTCATCAAGAG+TGG 0.591791 4.1:+42104992 None:intergenic
GGTGGAGCCATCAGTAACTC+CGG 0.595318 4.1:-42104242 MS.gene91201:CDS
TCACACGTGGAAAGCTGGAG+CGG 0.598731 4.1:+42105386 None:intergenic
TCACTCAAGTAAGTTGCAGA+AGG 0.606565 4.1:-42104131 MS.gene91201:CDS
ACAAGTGTACATCATGTGGC+TGG 0.606670 4.1:+42105591 None:intergenic
AATTCCCGAAGAGAGGAGGT+TGG 0.607635 4.1:-42104277 MS.gene91201:CDS
AGACATGCCGGAGTTACTGA+TGG 0.614504 4.1:+42104235 None:intergenic
GGAGGTTGGAAACTCTAGAT+GGG 0.616468 4.1:-42104263 MS.gene91201:CDS
TCTTCATCTCCGTGAAACTG+TGG 0.632446 4.1:-42105279 MS.gene91201:CDS
AATCAATTCCCGAAGAGAGG+AGG 0.632647 4.1:-42104281 MS.gene91201:CDS
TTCCACGTGTGAGTCACTCG+TGG 0.634670 4.1:-42105375 MS.gene91201:CDS
GGTTGGAAACTCTAGATGGG+TGG 0.637888 4.1:-42104260 MS.gene91201:CDS
GGTGTTGATCGGTAATGCAA+AGG 0.638827 4.1:+42105166 None:intergenic
AGCCACATGATGTACACTTG+TGG 0.639873 4.1:-42105589 MS.gene91201:CDS
ACATGTGTACATCATGTGAC+TGG 0.652666 4.1:+42105483 None:intergenic
AAAAGAAGTTCCTCCAAATG+TGG 0.655154 4.1:+42105197 None:intergenic
CTCGTGGTCTTAAAATTGCG+GGG 0.673910 4.1:-42105359 MS.gene91201:CDS
TCGTACCCATACTAGTAAGG+AGG 0.674938 4.1:+42104039 None:intergenic
GTCACATGATGTACACATGT+GGG 0.678429 4.1:-42105480 MS.gene91201:CDS
AGATGAAGAATCTTTAGCGA+CGG 0.678834 4.1:+42105293 None:intergenic
GACCACGAGTGACTCACACG+TGG 0.682798 4.1:+42105373 None:intergenic
ACCCACAAGTGTACATCATG+TGG 0.692380 4.1:+42105587 None:intergenic
TCTCTGGTAATTGAAAGTGA+AGG 0.696256 4.1:+42105720 None:intergenic
TATGCAGTTTCTCAGCATGG+AGG 0.703511 4.1:-42104785 MS.gene91201:intron
AGTCACATGATGTACACATG+TGG 0.706369 4.1:-42105481 MS.gene91201:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATTAATTAATTTGTTTAA+CGG + chr4.1:42106154-42106173 None:intergenic 10.0%
!!! TAAATACAAATGTTAATTTT+TGG - chr4.1:42106308-42106327 MS.gene91201:intron 10.0%
!! AGATAAAATTGTAAGTAAAA+TGG + chr4.1:42106240-42106259 None:intergenic 15.0%
!! TTATACAAATTGTTAAAATC+CGG + chr4.1:42105683-42105702 None:intergenic 15.0%
!! AAGTAAAATGGTTTAAAAGA+AGG + chr4.1:42106228-42106247 None:intergenic 20.0%
!! AATTTGTATAAACTCTTGAA+AGG - chr4.1:42105692-42105711 MS.gene91201:CDS 20.0%
!! CTCATTACATTTGAATTTAA+AGG - chr4.1:42106432-42106451 MS.gene91201:intron 20.0%
!! GATTGATAAATAGAAAATGA+TGG + chr4.1:42104613-42104632 None:intergenic 20.0%
!! TCAAAATATTAAAACTGAGT+TGG - chr4.1:42106458-42106477 MS.gene91201:intron 20.0%
!!! ATTTTTTATGAAGGGTAATA+TGG - chr4.1:42104348-42104367 MS.gene91201:intron 20.0%
!!! CCTTAGTTTTCTTATATTTT+CGG + chr4.1:42105111-42105130 None:intergenic 20.0%
!!! CTTTTAACATTTTCAAATCA+TGG - chr4.1:42104175-42104194 MS.gene91201:CDS 20.0%
!!! TTTTCACATTTTTCTGATAA+AGG + chr4.1:42104096-42104115 None:intergenic 20.0%
!!! TTTTTTATGAAGGGTAATAT+GGG - chr4.1:42104349-42104368 MS.gene91201:intron 20.0%
! AAATTCAAATGTAATGAGAC+TGG + chr4.1:42106430-42106449 None:intergenic 25.0%
! AAGTAACAAATCTTAGGAAT+AGG + chr4.1:42104644-42104663 None:intergenic 25.0%
! AAGTAGGCATATATAACAAA+AGG + chr4.1:42105520-42105539 None:intergenic 25.0%
! AATACCTAGTAAAAGATACA+TGG - chr4.1:42106113-42106132 MS.gene91201:intron 25.0%
! AATGAGAATAGAATTGCATA+TGG + chr4.1:42105817-42105836 None:intergenic 25.0%
! AATGTTCATGGATTCTAAAT+GGG - chr4.1:42104053-42104072 MS.gene91201:CDS 25.0%
! ACTTTCTAATGTCAAAACAT+TGG - chr4.1:42105715-42105734 MS.gene91201:CDS 25.0%
! AGTATATGCTATATATCAGT+TGG - chr4.1:42106285-42106304 MS.gene91201:intron 25.0%
! ATATGAAAAACTTCAAGTGA+CGG + chr4.1:42105575-42105594 None:intergenic 25.0%
! ATGAGAATAGAATTGCATAT+GGG + chr4.1:42105816-42105835 None:intergenic 25.0%
! CCGAAAATATAAGAAAACTA+AGG - chr4.1:42105108-42105127 MS.gene91201:CDS 25.0%
! TAAAAGAAGGTTAAATTGCT+AGG + chr4.1:42106215-42106234 None:intergenic 25.0%
!! TAGAAAATGATGGAAAATAG+AGG + chr4.1:42104603-42104622 None:intergenic 25.0%
!! TGAAGATTTGATTTCTTCTT+TGG + chr4.1:42104958-42104977 None:intergenic 25.0%
!! TTTGTGAAGTCATATTTTCT+AGG + chr4.1:42105617-42105636 None:intergenic 25.0%
!!! ATGTTGGTGATTTTTTATGA+AGG - chr4.1:42104339-42104358 MS.gene91201:intron 25.0%
!!! TAATTTTTGGTTTACATGCA+GGG - chr4.1:42106321-42106340 MS.gene91201:intron 25.0%
!!! TATTAGTTTGCCTATATTCT+CGG + chr4.1:42105003-42105022 None:intergenic 25.0%
!!! TGTTGGTGATTTTTTATGAA+GGG - chr4.1:42104340-42104359 MS.gene91201:intron 25.0%
!!! TTAATTTTTGGTTTACATGC+AGG - chr4.1:42106320-42106339 MS.gene91201:intron 25.0%
AAATATCTGAGAATTGCAGT+TGG - chr4.1:42105929-42105948 MS.gene91201:intron 30.0%
AAATGTGAAAACCTTGAACT+TGG - chr4.1:42104105-42104124 MS.gene91201:CDS 30.0%
AACATAAGAAGCTGAAAATC+TGG - chr4.1:42106077-42106096 MS.gene91201:intron 30.0%
ACTAATACTTGACAGTAAGA+TGG - chr4.1:42105016-42105035 MS.gene91201:CDS 30.0%
AGTAGAAAAAAGTTTACGCA+AGG - chr4.1:42106560-42106579 MS.gene91201:CDS 30.0%
ATGTGTTCTATCCAAAAGAT+GGG - chr4.1:42104866-42104885 MS.gene91201:intron 30.0%
CAATGTTCATGGATTCTAAA+TGG - chr4.1:42104052-42104071 MS.gene91201:CDS 30.0%
CTAATACTTGACAGTAAGAT+GGG - chr4.1:42105017-42105036 MS.gene91201:CDS 30.0%
GTAGAAAAAAGTTTACGCAA+GGG - chr4.1:42106561-42106580 MS.gene91201:CDS 30.0%
TAGAAAAAAGTTTACGCAAG+GGG - chr4.1:42106562-42106581 MS.gene91201:CDS 30.0%
TATAGACATGATTTCGACAA+GGG + chr4.1:42104488-42104507 None:intergenic 30.0%
TATGAAAAACTTCAAGTGAC+GGG + chr4.1:42105574-42105593 None:intergenic 30.0%
TCTCTTCAATAAGTGAAAAG+AGG + chr4.1:42105492-42105511 None:intergenic 30.0%
TGAAAAGAAGAATTGAGTGT+TGG + chr4.1:42105311-42105330 None:intergenic 30.0%
TTATAGACATGATTTCGACA+AGG + chr4.1:42104489-42104508 None:intergenic 30.0%
TTCCAGAAGTAACAAATCTT+AGG + chr4.1:42104650-42104669 None:intergenic 30.0%
! AACTCCATGTATCTTTTACT+AGG + chr4.1:42106120-42106139 None:intergenic 30.0%
! ACATTTTATCAGCTGAAACT+TGG + chr4.1:42104392-42104411 None:intergenic 30.0%
! ATTGCAAGATCCTTAAGTTT+TGG + chr4.1:42105985-42106004 None:intergenic 30.0%
!! TGAGGTTTTTCAAACAATGT+TGG - chr4.1:42104323-42104342 MS.gene91201:intron 30.0%
!! TTCCTAAGATTTGTTACTTC+TGG - chr4.1:42104645-42104664 MS.gene91201:CDS 30.0%
AAAAGAAGTTCCTCCAAATG+TGG + chr4.1:42105440-42105459 None:intergenic 35.0%
AACAAGACAGAACAACATTC+AGG - chr4.1:42104274-42104293 MS.gene91201:CDS 35.0%
ACAGAATGCTCCAAAACTTA+AGG - chr4.1:42105972-42105991 MS.gene91201:intron 35.0%
ACATTTGTACAAACATTGCC+CGG - chr4.1:42104540-42104559 MS.gene91201:intron 35.0%
ACTTAAGGATCTTGCAATTG+CGG - chr4.1:42105987-42106006 MS.gene91201:intron 35.0%
AGAAATCCTCCTTACTAGTA+TGG - chr4.1:42106589-42106608 MS.gene91201:CDS 35.0%
AGATGAAGAATCTTTAGCGA+CGG + chr4.1:42105344-42105363 None:intergenic 35.0%
ATGAAAAACTTCAAGTGACG+GGG + chr4.1:42105573-42105592 None:intergenic 35.0%
ATGGTCCAAATCAAAAGCAA+TGG - chr4.1:42104194-42104213 MS.gene91201:CDS 35.0%
ATTTCTTCTTTGGACATCAC+AGG + chr4.1:42104948-42104967 None:intergenic 35.0%
CATGTGTTCTATCCAAAAGA+TGG - chr4.1:42104865-42104884 MS.gene91201:intron 35.0%
CTATCATTCCCTCAAAAGAT+GGG + chr4.1:42104244-42104263 None:intergenic 35.0%
CTGTATATAGAAGCAATGAC+CGG + chr4.1:42104562-42104581 None:intergenic 35.0%
GGACAACACTTAATAGAAGT+AGG + chr4.1:42105536-42105555 None:intergenic 35.0%
GGTAATTGAAAGTGAAGGTT+GGG + chr4.1:42104912-42104931 None:intergenic 35.0%
GTGAAAAAGAGACCTTAACA+AGG + chr4.1:42104424-42104443 None:intergenic 35.0%
TATCATTCCCTCAAAAGATG+GGG + chr4.1:42104243-42104262 None:intergenic 35.0%
TCTATCATTCCCTCAAAAGA+TGG + chr4.1:42104245-42104264 None:intergenic 35.0%
TCTCTGGTAATTGAAAGTGA+AGG + chr4.1:42104917-42104936 None:intergenic 35.0%
TGCATATGGGAGACTAAATA+TGG + chr4.1:42105803-42105822 None:intergenic 35.0%
TGGTAATTGAAAGTGAAGGT+TGG + chr4.1:42104913-42104932 None:intergenic 35.0%
TGTATATAGAAGCAATGACC+GGG + chr4.1:42104561-42104580 None:intergenic 35.0%
TTTCTCTGATACCAAGTTCA+AGG + chr4.1:42104119-42104138 None:intergenic 35.0%
TTTCTTCTTTGGACATCACA+GGG + chr4.1:42104947-42104966 None:intergenic 35.0%
! ATCATGTCATAGCTTTACTC+AGG - chr4.1:42104727-42104746 MS.gene91201:CDS 35.0%
! GCTCTCAATGATTTTCTATC+TGG - chr4.1:42105410-42105429 MS.gene91201:CDS 35.0%
!! AAGTGAAAAGAGGTGTTGAT+CGG + chr4.1:42105482-42105501 None:intergenic 35.0%
!! AATGTCAAAACATTGGCTCT+CGG - chr4.1:42105722-42105741 MS.gene91201:CDS 35.0%
!! GGTTTCCATTGCTTTTGATT+TGG + chr4.1:42104202-42104221 None:intergenic 35.0%
!! TTATATTTTCGGTGCGTCTT+AGG + chr4.1:42105100-42105119 None:intergenic 35.0%
!! TTCAAAGGCATTAGATCTCA+AGG - chr4.1:42105178-42105197 MS.gene91201:CDS 35.0%
!!! GAACAACATTCAGGTTGTTT+TGG - chr4.1:42104283-42104302 MS.gene91201:CDS 35.0%
!!! GCGGCAATAAAACTTTTTCA+TGG + chr4.1:42105232-42105251 None:intergenic 35.0%
!!! TCAGGTTGTTTTGGTCTTTT+TGG - chr4.1:42104292-42104311 MS.gene91201:CDS 35.0%
AAAGTGAAGGTTGGGAATCT+TGG + chr4.1:42104904-42104923 None:intergenic 40.0%
ACATGTGTACATCATGTGAC+TGG + chr4.1:42105154-42105173 None:intergenic 40.0%
AGTCACATGATGTACACATG+TGG - chr4.1:42105153-42105172 MS.gene91201:CDS 40.0%
GTCACATGATGTACACATGT+GGG - chr4.1:42105154-42105173 MS.gene91201:CDS 40.0%
TAGAATACGCCACAGTTTCA+CGG + chr4.1:42105367-42105386 None:intergenic 40.0%
TATCAGCTGAAACTTGGCTT+AGG + chr4.1:42104386-42104405 None:intergenic 40.0%
TCACTCAAGTAAGTTGCAGA+AGG - chr4.1:42106503-42106522 MS.gene91201:intron 40.0%
TCTATCTGGTTGTCCACATT+TGG - chr4.1:42105424-42105443 MS.gene91201:CDS 40.0%
TGAAATCAATTCCCGAAGAG+AGG - chr4.1:42106350-42106369 MS.gene91201:intron 40.0%
TGTACACATGTGGGTTTCAA+AGG - chr4.1:42105163-42105182 MS.gene91201:CDS 40.0%
TGTACACTTGTGGGTTTCAA+AGG - chr4.1:42105055-42105074 MS.gene91201:CDS 40.0%
TGTTATGCAGTTTCTCAGCA+TGG - chr4.1:42105846-42105865 MS.gene91201:CDS 40.0%
! ACTCGTGGTCTTAAAATTGC+GGG - chr4.1:42105274-42105293 MS.gene91201:CDS 40.0%
! CACTCGTGGTCTTAAAATTG+CGG - chr4.1:42105273-42105292 MS.gene91201:CDS 40.0%
! TGTTGCTTGAGACCTTGTTA+AGG - chr4.1:42104409-42104428 MS.gene91201:intron 40.0%
! TTCTGAACCCCATCTTTTGA+GGG - chr4.1:42104233-42104252 MS.gene91201:CDS 40.0%
!! CTAAGGCTTGATAGCGAAAA+AGG - chr4.1:42105125-42105144 MS.gene91201:CDS 40.0%
!! GTCTTTTTGGCAGAAAGTTG+AGG - chr4.1:42104305-42104324 MS.gene91201:intron 40.0%
AAGAGCAGCTTCATCAAGAG+TGG + chr4.1:42105645-42105664 None:intergenic 45.0%
AAGGATCTTGCAATTGCGGT+TGG - chr4.1:42105991-42106010 MS.gene91201:intron 45.0%
AATCAATTCCCGAAGAGAGG+AGG - chr4.1:42106353-42106372 MS.gene91201:intron 45.0%
ACAAGTGTACATCATGTGGC+TGG + chr4.1:42105046-42105065 None:intergenic 45.0%
ACAGATCCAAGTCAAGTTCC+TGG + chr4.1:42105205-42105224 None:intergenic 45.0%
ACCCACAAGTGTACATCATG+TGG + chr4.1:42105050-42105069 None:intergenic 45.0%
AGCCACATGATGTACACTTG+TGG - chr4.1:42105045-42105064 MS.gene91201:CDS 45.0%
AGGAGGTTGGAAACTCTAGA+TGG - chr4.1:42106370-42106389 MS.gene91201:intron 45.0%
AGTTTCCAACCTCCTCTCTT+CGG + chr4.1:42106365-42106384 None:intergenic 45.0%
ATCTGGTTGTCCACATTTGG+AGG - chr4.1:42105427-42105446 MS.gene91201:CDS 45.0%
CAAAGACGCTCCGAGAATAT+AGG - chr4.1:42104990-42105009 MS.gene91201:CDS 45.0%
GCCACATGATGTACACTTGT+GGG - chr4.1:42105046-42105065 MS.gene91201:CDS 45.0%
GGAGGTTGGAAACTCTAGAT+GGG - chr4.1:42106371-42106390 MS.gene91201:intron 45.0%
GGGTTCAGAACAAGACATCA+AGG + chr4.1:42104223-42104242 None:intergenic 45.0%
TATGCAGTTTCTCAGCATGG+AGG - chr4.1:42105849-42105868 MS.gene91201:CDS 45.0%
TCTTCATCTCCGTGAAACTG+TGG - chr4.1:42105355-42105374 MS.gene91201:CDS 45.0%
TCTTTGCATTTGCAAGCGTC+CGG - chr4.1:42105661-42105680 MS.gene91201:CDS 45.0%
TTTACTCAGGTGTTCAGCTC+AGG - chr4.1:42104740-42104759 MS.gene91201:CDS 45.0%
! AGACTGGTTGTAAGACATGC+CGG + chr4.1:42106414-42106433 None:intergenic 45.0%
! ATCACAGGGTCTGAAATCTC+TGG + chr4.1:42104933-42104952 None:intergenic 45.0%
! CTATATTCTCGGAGCGTCTT+TGG + chr4.1:42104992-42105011 None:intergenic 45.0%
! CTCGTGGTCTTAAAATTGCG+GGG - chr4.1:42105275-42105294 MS.gene91201:CDS 45.0%
!! GACGGGGCATTAATTTGTAG+TGG + chr4.1:42105557-42105576 None:intergenic 45.0%
!! GGTGTTGATCGGTAATGCAA+AGG + chr4.1:42105471-42105490 None:intergenic 45.0%
!! GTTCTGAACCCCATCTTTTG+AGG - chr4.1:42104232-42104251 MS.gene91201:CDS 45.0%
!! ATTAAAAAAGAAAAATATTT+AGG + chr4.1:42105772-42105791 None:intergenic 5.0%
AATTCCCGAAGAGAGGAGGT+TGG - chr4.1:42106357-42106376 MS.gene91201:intron 50.0%
AGACATGCCGGAGTTACTGA+TGG + chr4.1:42106402-42106421 None:intergenic 50.0%
CAAGGTCCAGGAACTTGACT+TGG - chr4.1:42105196-42105215 MS.gene91201:CDS 50.0%
GGCATTAGATCTCAAGGTCC+AGG - chr4.1:42105184-42105203 MS.gene91201:CDS 50.0%
GGTTGGAAACTCTAGATGGG+TGG - chr4.1:42106374-42106393 MS.gene91201:intron 50.0%
GTTTCCAACCTCCTCTCTTC+GGG + chr4.1:42106364-42106383 None:intergenic 50.0%
!! GCAGATCGACTCCCATCTTT+TGG + chr4.1:42104880-42104899 None:intergenic 50.0%
CAGGTGTTCAGCTCAGGTCA+TGG - chr4.1:42104746-42104765 MS.gene91201:CDS 55.0%
GGTGGAGCCATCAGTAACTC+CGG - chr4.1:42106392-42106411 MS.gene91201:intron 55.0%
GTGACTCACACGTGGAAAGC+TGG + chr4.1:42105256-42105275 None:intergenic 55.0%
TCACACGTGGAAAGCTGGAG+CGG + chr4.1:42105251-42105270 None:intergenic 55.0%
TTCCACGTGTGAGTCACTCG+TGG - chr4.1:42105259-42105278 MS.gene91201:CDS 55.0%
GACCACGAGTGACTCACACG+TGG + chr4.1:42105264-42105283 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 42104045 42106611 42104045 ID=MS.gene91201
chr4.1 mRNA 42104045 42106611 42104045 ID=MS.gene91201.t1;Parent=MS.gene91201
chr4.1 exon 42106530 42106611 42106530 ID=MS.gene91201.t1.exon1;Parent=MS.gene91201.t1
chr4.1 CDS 42106530 42106611 42106530 ID=cds.MS.gene91201.t1;Parent=MS.gene91201.t1
chr4.1 exon 42104896 42105917 42104896 ID=MS.gene91201.t1.exon2;Parent=MS.gene91201.t1
chr4.1 CDS 42104896 42105917 42104896 ID=cds.MS.gene91201.t1;Parent=MS.gene91201.t1
chr4.1 exon 42104633 42104800 42104633 ID=MS.gene91201.t1.exon3;Parent=MS.gene91201.t1
chr4.1 CDS 42104633 42104800 42104633 ID=cds.MS.gene91201.t1;Parent=MS.gene91201.t1
chr4.1 exon 42104045 42104314 42104045 ID=MS.gene91201.t1.exon4;Parent=MS.gene91201.t1
chr4.1 CDS 42104045 42104314 42104045 ID=cds.MS.gene91201.t1;Parent=MS.gene91201.t1
Gene Sequence

>MS.gene91201

ATGGTAGCAATGTTCATGGATTCTAAATGGGAAGACACAAAGTTTAAACCTTTATCAGAAAAATGTGAAAACCTTGAACTTGGTATCAGAGAAATTGTTGAGTTAACAGTTTGAAGAAACTCAATCATAGCTTTTAACATTTTCAAATCATGGTCCAAATCAAAAGCAATGGAAACCTTGATGTCTTGTTCTGAACCCCATCTTTTGAGGGAATGATAGAGATTTTTCAAACAAGACAGAACAACATTCAGGTTGTTTTGGTCTTTTTGGCAGAAAGTTGAGGTTTTTCAAACAATGTTGGTGATTTTTTATGAAGGGTAATATGGGAAAATGTTTAACCTAAGCCAAGTTTCAGCTGATAAAATGTTGCTTGAGACCTTGTTAAGGTCTCTTTTTCACATGTGTGCATTCTGACTATTTTTATTACATATTGCAAGTTTCCCTTGTCGAAATCATGTCTATAATTATGACAGCTTCAGTAACATTTTTCATGTAACATTTGTACAAACATTGCCCGGTCATTGCTTCTATATACAGTTTTCACTTATATTCATTCCTCTATTTTCCATCATTTTCTATTTATCAATCATTTTGTACCTATTCCTAAGATTTGTTACTTCTGGAATCTAATTTTATTGAAATTGCGTTAATCTCTCTGTTTATTGCTAATGAAATCTCTTCAATCATGTCATAGCTTTACTCAGGTGTTCAGCTCAGGTCATGGCGTGCTCTGATGAAAAACATGATCGATTAAGCAATCTCTCAGACGATTTGATTTGTCATATTTGTTCTTTTCTATCAACAAAAGAGTCTTATAGAACATGTGTTCTATCCAAAAGATGGGAGTCGATCTGCACCAAGATTCCCAACCTTCACTTTCAATTACCAGAGATTTCAGACCCTGTGATGTCCAAAGAAGAAATCAAATCTTCACAGCTTGCTTTCCAAAGACGCTCCGAGAATATAGGCAAACTAATACTTGACAGTAAGATGGGCTGCCAGCCACATGATGTACACTTGTGGGTTTCAAAGGCATTTGTAAATTTTGCTCTCCTAAGACGCACCGAAAATATAAGAAAACTAAGGCTTGATAGCGAAAAAGGCTGCCAGTCACATGATGTACACATGTGGGTTTCAAAGGCATTAGATCTCAAGGTCCAGGAACTTGACTTGGATCTGTTTCTCCATGAAAAAGTTTTATTGCCGCTCCAGCTTTCCACGTGTGAGTCACTCGTGGTCTTAAAATTGCGGGGCAGAATTCAACCAACACTCAATTCTTCTTTTCATGTATATTTACCGTCGCTAAAGATTCTTCATCTCCGTGAAACTGTGGCGTATTCTATGTTTGATGACAGTAAAGAGTATGCTCTCAATGATTTTCTATCTGGTTGTCCACATTTGGAGGAACTTCTTTTGCATGAGACCTTTGCATTACCGATCAACACCTCTTTTCACTTATTGAAGAGATTATTCCTTTTGTTATATATGCCTACTTCTATTAAGTGTTGTCCACTACAAATTAATGCCCCGTCACTTGAAGTTTTTCATATAGCTGATCTTTCATTGACTCCTAGAAAATATGACTTCACAAACTTATCCACTCTTGATGAAGCTGCTCTTTGCATTTGCAAGCGTCCGGATTTTAACAATTTGTATAAACTCTTGAAAGGACTTTCTAATGTCAAAACATTGGCTCTCGGTTCTAAAACTTTTCATGTAAGTTTCCTAAATATTTTTCTTTTTTAATTACAAGTTCCATATTTAGTCTCCCATATGCAATTCTATTCTCATTTTATAATTTTGTTATGCAGTTTCTCAGCATGGAGGACAAACTTGACAGCTTGCATCTTCTCACTTTTCACAATTTATTATTTTTAACAGTTGAAATATCTGAGAATTGCAGTTGGAATATGCTCATCAGCTTTCTACAGAATGCTCCAAAACTTAAGGATCTTGCAATTGCGGTTGGAATTCAGTGTGTATGAAGTTTTTTTTAACTATATTTGCACAATATATTTTTTTTAAAAGATAAAACATAAGAAGCTGAAAATCTGGCACAAGAAGAGCAAATACCTAGTAAAAGATACATGGAGTTTGCAAATAAAACCGTTAAACAAATTAATTAATTCAAAACAATCTATATCTGATCTATATTTGTGTAGATTTTCCTAGCAATTTAACCTTCTTTTAAACCATTTTACTTACAATTTTATCTTTATTTTCTTAATAATGTAATTGAAAGTATATGCTATATATCAGTTGGTAAATACAAATGTTAATTTTTGGTTTACATGCAGGGAAAATTTGAAATCAATTCCCGAAGAGAGGAGGTTGGAAACTCTAGATGGGTGGAGCCATCAGTAACTCCGGCATGTCTTACAACCAGTCTCATTACATTTGAATTTAAAGGAATTCAAAATATTAAAACTGAGTTGGACTTTACGCGATATATTGTAAGTCACTCAAGTAAGTTGCAGAAGGTAAAGATTTTCACACTCAGTTCAAAGAAAAGAAGAGTAGAAAAAAGTTTACGCAAGGGGTCAAAGAAATCCTCCTTACTAGTATGG

Protein sequence

>MS.gene91201.t1

MVAMFMDSKWEDTKFKPLSEKCENLELALLRCSAQVMACSDEKHDRLSNLSDDLICHICSFLSTKESYRTCVLSKRWESICTKIPNLHFQLPEISDPVMSKEEIKSSQLAFQRRSENIGKLILDSKMGCQPHDVHLWVSKAFVNFALLRRTENIRKLRLDSEKGCQSHDVHMWVSKALDLKVQELDLDLFLHEKVLLPLQLSTCESLVVLKLRGRIQPTLNSSFHVYLPSLKILHLRETVAYSMFDDSKEYALNDFLSGCPHLEELLLHETFALPINTSFHLLKRLFLLLYMPTSIKCCPLQINAPSLEVFHIADLSLTPRKYDFTNLSTLDEAALCICKRPDFNNLYKLLKGLSNVKTLALGSKTFHFLSMEDKLDSLHLLTFHNLLFLTVEISENCSWNMLISFLQNAPKLKDLAIAVGIQCGKFEINSRREEVGNSRWVEPSVTPACLTTSLITFEFKGIQNIKTELDFTRYIVSHSSKLQKVKIFTLSSKKRRVEKSLRKGSKKSSLLVW