AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053514


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053514.t1 MTR_4g056040 62.500 232 65 6 142 368 253 467 5.19e-80 254
MS.gene053514.t1 MTR_4g056040 41.613 310 112 7 11 277 1 284 2.26e-52 182
MS.gene053514.t1 MTR_1g038710 63.319 229 62 6 144 368 241 451 2.80e-79 250
MS.gene053514.t1 MTR_1g038710 53.953 215 73 6 1 191 1 213 1.45e-54 186
MS.gene053514.t1 MTR_4g055990 62.996 227 67 6 147 368 265 479 8.33e-79 251
MS.gene053514.t1 MTR_4g055990 45.783 249 68 6 11 209 1 232 3.60e-51 178
MS.gene053514.t1 MTR_4g055990 62.996 227 67 6 147 368 265 479 1.08e-78 250
MS.gene053514.t1 MTR_4g055990 47.034 236 61 5 11 196 1 222 4.55e-51 178
MS.gene053514.t1 MTR_7g110920 61.039 231 78 9 145 368 95 320 1.52e-78 244
MS.gene053514.t1 MTR_4g056020 61.233 227 66 6 147 368 228 437 1.80e-78 248
MS.gene053514.t1 MTR_4g056020 54.717 212 66 5 11 209 1 195 2.85e-62 206
MS.gene053514.t1 MTR_4g056030 51.361 294 114 9 80 368 168 437 4.69e-78 248
MS.gene053514.t1 MTR_4g056030 52.804 214 71 5 11 211 1 197 8.92e-58 195
MS.gene053514.t1 MTR_4g055580 54.023 261 85 7 126 368 321 564 1.50e-71 234
MS.gene053514.t1 MTR_4g055580 41.325 317 109 9 11 277 92 381 8.49e-51 179
MS.gene053514.t1 MTR_4g056070 54.502 211 75 5 122 328 243 436 3.02e-59 198
MS.gene053514.t1 MTR_4g056070 44.664 253 70 6 11 210 1 236 5.33e-49 171
MS.gene053514.t1 MTR_4g056020 64.103 156 40 3 214 368 1 141 8.85e-58 185
MS.gene053514.t1 MTR_1g090883 55.026 189 71 4 1 177 1 187 6.13e-50 172
MS.gene053514.t1 MTR_1g090883 60.630 127 43 5 144 266 235 358 9.34e-36 134
MS.gene053514.t1 MTR_1g090900 65.909 132 42 2 11 139 1 132 9.25e-48 161
MS.gene053514.t1 MTR_4g093690 52.023 173 65 4 1 158 1 170 6.79e-44 153
MS.gene053514.t1 MTR_1g090890 63.953 86 29 1 283 368 33 116 2.46e-29 110
MS.gene053514.t1 MTR_4g056010 54.737 95 30 2 79 160 2 96 3.93e-23 92.8
MS.gene053514.t1 MTR_1g041245 25.556 360 217 9 19 343 11 354 1.56e-20 92.4
MS.gene053514.t1 MTR_0543s0010 28.045 353 205 13 19 343 86 417 5.25e-19 88.6
MS.gene053514.t1 MTR_0492s0020 28.045 353 205 13 19 343 86 417 5.45e-19 88.2
MS.gene053514.t1 MTR_3g108560 27.913 369 196 13 16 343 17 356 2.34e-18 86.3
MS.gene053514.t1 MTR_7g033990 25.389 386 210 13 19 357 11 365 1.98e-17 83.6
MS.gene053514.t1 MTR_2g005990 23.821 403 230 12 19 364 6 388 9.09e-17 81.3
MS.gene053514.t1 MTR_7g032380 25.000 348 204 11 19 343 11 324 1.11e-16 80.9
MS.gene053514.t1 MTR_7g034115 26.184 359 213 14 19 343 11 351 1.61e-15 77.8
MS.gene053514.t1 MTR_3g082890 25.464 377 216 13 16 343 94 454 2.45e-15 77.4
MS.gene053514.t1 MTR_7g110910 72.917 48 13 0 1 48 148 195 3.52e-15 73.9
MS.gene053514.t1 MTR_7g056433 25.401 374 207 15 16 343 9 356 4.96e-15 76.3
MS.gene053514.t1 MTR_3g107100 26.509 381 201 15 16 346 8 359 9.34e-15 75.5
MS.gene053514.t1 MTR_5g012840 25.309 324 178 10 44 348 14 292 9.47e-15 74.7
MS.gene053514.t1 MTR_7g098510 25.995 377 191 15 19 343 18 358 1.24e-14 75.1
MS.gene053514.t1 MTR_1g053025 26.355 406 214 18 19 364 2 382 2.23e-14 74.3
MS.gene053514.t1 MTR_2g007450 23.741 417 228 12 19 364 16 413 6.05e-14 73.2
MS.gene053514.t1 MTR_1g085120 24.439 401 224 13 1 355 83 450 9.38e-14 72.8
MS.gene053514.t1 MTR_1g085120 24.623 398 221 13 4 355 161 525 1.18e-13 72.4
MS.gene053514.t1 MTR_7g032370 23.907 343 209 10 30 343 1 320 1.33e-13 71.6
MS.gene053514.t1 MTR_8g085430 22.941 340 193 10 19 343 11 296 1.30e-12 68.6
MS.gene053514.t1 MTR_7g098480 26.302 384 221 12 19 364 18 377 1.36e-12 69.3
MS.gene053514.t1 MTR_4g039440 25.995 377 193 15 19 343 34 376 7.27e-12 66.6
MS.gene053514.t1 MTR_7g034110 24.242 330 185 11 19 328 11 295 1.67e-11 65.5
MS.gene053514.t1 MTR_7g055943 25.798 376 213 13 13 343 34 388 1.83e-11 65.5
MS.gene053514.t1 MTR_5g045170 22.785 395 189 14 21 347 16 362 2.99e-11 64.7
MS.gene053514.t1 MTR_6g040270 24.444 360 211 12 21 343 10 345 6.03e-11 63.9
MS.gene053514.t1 MTR_7g056277 23.562 365 221 8 19 348 259 600 8.57e-11 63.9
MS.gene053514.t1 MTR_3g108560 35.484 155 87 5 16 160 17 168 9.67e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053514.t1 AT3G59190 25.275 455 204 17 19 344 12 459 9.11e-18 85.1
MS.gene053514.t1 AT3G59190 25.936 374 157 12 19 276 12 381 2.09e-16 80.5
MS.gene053514.t1 AT3G59000 24.260 338 186 9 19 345 2 280 2.92e-13 70.5

Find 66 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTGCATTTGAATTTAA+AGG 0.118708 4.3:+26851422 MS.gene053514:CDS
TAAGAGATGGGGCATTAATT+TGG 0.263787 4.3:-26850675 None:intergenic
AGAAATCTTCGATACTAGTA+TGG 0.269834 4.3:+26851576 MS.gene053514:CDS
CACTGTTTCGAGATTCTTGC+CGG 0.280930 4.3:-26849978 None:intergenic
TTCTACTACTTTCTCTGAAT+CGG 0.286108 4.3:-26851531 None:intergenic
TATTGCCGCTTAAGCTTTCC+AGG 0.287296 4.3:+26850365 MS.gene053514:CDS
ATGGCGAGATCCTTGAGTTT+TGG 0.295775 4.3:-26851104 None:intergenic
ATGGCGAGATCCTTGAGTTT+TGG 0.295775 4.3:-26851146 None:intergenic
ATGTACAAATTGAATTTCTT+TGG 0.307589 4.3:-26850188 None:intergenic
AAGAGCAGCTTCATCAATAT+TGG 0.323876 4.3:-26850764 None:intergenic
GATTATGAAACTTACATGTT+TGG 0.324865 4.3:-26850863 None:intergenic
GTTTACAACCTCATATGTTA+TGG 0.336392 4.3:-26850737 None:intergenic
TATAAGATTCTTCTGTTGAT+AGG 0.352003 4.3:-26850072 None:intergenic
GGAAAGCTTAAGCGGCAATA+AGG 0.373735 4.3:-26850362 None:intergenic
TCAAAGACAAGTCAAGTTCT+TGG 0.384504 4.3:-26850324 None:intergenic
CTAAGTATCGATAGTGTTCA+AGG 0.391147 4.3:+26850247 MS.gene053514:CDS
TCTTTGGACGACGCAGGGTC+TGG 0.400128 4.3:-26850172 None:intergenic
TCTACTACTTTCTCTGAATC+GGG 0.403758 4.3:-26851530 None:intergenic
CATACTCCAATTGCAATTCT+CGG 0.424606 4.3:-26851057 None:intergenic
TTTACAACCTCATATGTTAT+GGG 0.428309 4.3:-26850736 None:intergenic
AAAGTCAAGGTCGAGGATCT+TGG 0.450199 4.3:-26850134 None:intergenic
GACGCAGGGTCTGGAATCTC+TGG 0.459313 4.3:-26850163 None:intergenic
CAGAAAGAACTTTAAGAGAT+GGG 0.479739 4.3:-26850687 None:intergenic
AAATATCCGAGAATTGCAAT+TGG 0.484292 4.3:+26851051 MS.gene053514:CDS
TCACAATTTATTATCTCTAT+CGG 0.488933 4.3:+26851025 MS.gene053514:CDS
ACAGAAAGAACTTTAAGAGA+TGG 0.499128 4.3:-26850688 None:intergenic
GACTACTCCCATAACATATG+AGG 0.502185 4.3:+26850729 MS.gene053514:CDS
AGGAGATTGTAAACTCGAGT+TGG 0.519881 4.3:+26851360 MS.gene053514:CDS
GGAGATTGTAAACTCGAGTT+GGG 0.524198 4.3:+26851361 MS.gene053514:CDS
TATGTTATGGGAGTAGTCAA+TGG 0.525460 4.3:-26850724 None:intergenic
GATGGGGCATTAATTTGGAC+TGG 0.526954 4.3:-26850670 None:intergenic
AGATTCTTCTGTTGATAGGA+AGG 0.529657 4.3:-26850068 None:intergenic
TTTCTTCATATGGAGGAAGC+CGG 0.530262 4.3:+26849959 None:intergenic
TGAATTTCTTTGGACGACGC+AGG 0.534570 4.3:-26850178 None:intergenic
TATATATTATAAATCAATCA+AGG 0.537921 4.3:+26851480 MS.gene053514:CDS
AGTAGAAAGAAGTTTACTCA+AGG 0.539582 4.3:+26851547 MS.gene053514:CDS
GAATTTCTTTGGACGACGCA+GGG 0.539953 4.3:-26850177 None:intergenic
AACCACAGGATGCACACACA+TGG 0.540159 4.3:+26850275 MS.gene053514:CDS
TTCAAAGGCATTAGATCTCA+AGG 0.542872 4.3:+26850300 MS.gene053514:CDS
GTAGAAAGAAGTTTACTCAA+GGG 0.543204 4.3:+26851548 MS.gene053514:CDS
AAACATCATACACACCTCAA+TGG 0.550288 4.3:-26851165 None:intergenic
TGCACACACATGGGTTTCAA+AGG 0.552909 4.3:+26850285 MS.gene053514:CDS
ACATAATGCTCCAAAACTCA+AGG 0.554768 4.3:+26851094 MS.gene053514:CDS
ACTCAAGGATCTCGCCATTG+AGG 0.556897 4.3:+26851109 MS.gene053514:CDS
ACTCAAGGATCTCGCCATTG+AGG 0.556897 4.3:+26851151 MS.gene053514:CDS
CATGTGTTCTATCAACAAGA+TGG 0.568475 4.3:+26850098 MS.gene053514:CDS
TGTTCAAGGCTGTCAACCAC+AGG 0.574584 4.3:+26850261 MS.gene053514:CDS
GAAATCTTCGATACTAGTAT+GGG 0.575214 4.3:+26851577 MS.gene053514:CDS
AGCATTATGTAGAACCTCAA+TGG 0.575521 4.3:-26851123 None:intergenic
ATTGTAAACTCGAGTTGGGT+GGG 0.577800 4.3:+26851365 MS.gene053514:CDS
GATTGTAAACTCGAGTTGGG+TGG 0.581438 4.3:+26851364 MS.gene053514:CDS
ACATAATGCTCCAAAACTCA+AGG 0.583158 4.3:+26851136 MS.gene053514:CDS
AATGTCAAATCATTGACTCT+CGG 0.589479 4.3:+26850838 MS.gene053514:CDS
TCACACCTGGAAAGCTTAAG+CGG 0.589517 4.3:-26850370 None:intergenic
AGACTTGTTGAAAGACATGA+TGG 0.601053 4.3:-26851401 None:intergenic
TAGAAAGAAGTTTACTCAAG+GGG 0.610799 4.3:+26851549 MS.gene053514:CDS
GTAATACAAAGTCAAGGTCG+AGG 0.611127 4.3:-26850141 None:intergenic
ACCCATGTGTGTGCATCCTG+TGG 0.612912 4.3:-26850277 None:intergenic
AGAAAGAACTTTAAGAGATG+GGG 0.624862 4.3:-26850686 None:intergenic
TCAATCAAGGAAGTTAGAGA+AGG 0.628063 4.3:+26851493 MS.gene053514:CDS
CATAGGGTTGCATCTAACGT+TGG 0.653512 4.3:+26850646 MS.gene053514:intron
TCTCTGGTAATACAAAGTCA+AGG 0.656642 4.3:-26850147 None:intergenic
CGGCAAGAATCTCGAAACAG+TGG 0.657960 4.3:+26849979 MS.gene053514:CDS
ACCACAGGATGCACACACAT+GGG 0.658386 4.3:+26850276 MS.gene053514:CDS
AGACATGATGGAGTTACTGA+TGG 0.669795 4.3:-26851389 None:intergenic
GTGTTCTATCAACAAGATGG+AGG 0.688828 4.3:+26850101 MS.gene053514:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTATAAATCAATCA+AGG + chr4.3:26851480-26851499 MS.gene053514:CDS 10.0%
!!! ATTTGCACAAATTTTTAAAA+AGG + chr4.3:26851198-26851217 MS.gene053514:intron 15.0%
!! ATGTACAAATTGAATTTCTT+TGG - chr4.3:26850191-26850210 None:intergenic 20.0%
!! GATCTTAATAAATTTCTATC+TGG + chr4.3:26850523-26850542 MS.gene053514:intron 20.0%
!! TCACAATTTATTATCTCTAT+CGG + chr4.3:26851025-26851044 MS.gene053514:CDS 20.0%
!! TGAAAAAAATTCTCAAAGAA+AGG + chr4.3:26851340-26851359 MS.gene053514:CDS 20.0%
!!! AACTTTTATACATTCATGAA+AGG + chr4.3:26850808-26850827 MS.gene053514:CDS 20.0%
!!! ACCTATCTTTATTTATACAT+AGG + chr4.3:26850629-26850648 MS.gene053514:intron 20.0%
!!! CCTATCTTTATTTATACATA+GGG + chr4.3:26850630-26850649 MS.gene053514:intron 20.0%
! AATGAAAAGAGATTTGCATA+TGG - chr4.3:26850935-26850954 None:intergenic 25.0%
! ATGAAAAGAGATTTGCATAT+GGG - chr4.3:26850934-26850953 None:intergenic 25.0%
! CCCTATGTATAAATAAAGAT+AGG - chr4.3:26850633-26850652 None:intergenic 25.0%
! CTCATTGCATTTGAATTTAA+AGG + chr4.3:26851422-26851441 MS.gene053514:CDS 25.0%
! GATTATGAAACTTACATGTT+TGG - chr4.3:26850866-26850885 None:intergenic 25.0%
! TATAAGATTCTTCTGTTGAT+AGG - chr4.3:26850075-26850094 None:intergenic 25.0%
! TCAAAACATAAAAACTGAGT+TGG + chr4.3:26851448-26851467 MS.gene053514:CDS 25.0%
! TTTACAACCTCATATGTTAT+GGG - chr4.3:26850739-26850758 None:intergenic 25.0%
!!! CATTTTGTTTTTTTGACAAG+TGG + chr4.3:26851675-26851694 MS.gene053514:intron 25.0%
!!! TTTTGGAGCATTATGTAAAA+AGG - chr4.3:26851090-26851109 None:intergenic 25.0%
AAAAATAATTCCTCCACATG+TGG - chr4.3:26850553-26850572 None:intergenic 30.0%
AAATATCCGAGAATTGCAAT+TGG + chr4.3:26851051-26851070 MS.gene053514:CDS 30.0%
AGAAATCTTCGATACTAGTA+TGG + chr4.3:26851576-26851595 MS.gene053514:CDS 30.0%
AGTAAAAGATACACGAAGTT+TGG + chr4.3:26851270-26851289 MS.gene053514:intron 30.0%
AGTAGAAAGAAGTTTACTCA+AGG + chr4.3:26851547-26851566 MS.gene053514:CDS 30.0%
ATATCTCTTCTCTCTTATTG+AGG + chr4.3:26850599-26850618 MS.gene053514:intron 30.0%
GAAATCTTCGATACTAGTAT+GGG + chr4.3:26851577-26851596 MS.gene053514:CDS 30.0%
GTAGAAAGAAGTTTACTCAA+GGG + chr4.3:26851548-26851567 MS.gene053514:CDS 30.0%
GTTTACAACCTCATATGTTA+TGG - chr4.3:26850740-26850759 None:intergenic 30.0%
TAAGAGAGAAGAGATATTGA+CGG - chr4.3:26850596-26850615 None:intergenic 30.0%
TAGAAAGAAGTTTACTCAAG+GGG + chr4.3:26851549-26851568 MS.gene053514:CDS 30.0%
TTCGAGATGAAGAATCTTTA+GGG - chr4.3:26850461-26850480 None:intergenic 30.0%
TTCTACTACTTTCTCTGAAT+CGG - chr4.3:26851534-26851553 None:intergenic 30.0%
! ACAGAAAGAACTTTAAGAGA+TGG - chr4.3:26850691-26850710 None:intergenic 30.0%
! AGAAAGAACTTTAAGAGATG+GGG - chr4.3:26850689-26850708 None:intergenic 30.0%
! CAGAAAGAACTTTAAGAGAT+GGG - chr4.3:26850690-26850709 None:intergenic 30.0%
!! AATGTCAAATCATTGACTCT+CGG + chr4.3:26850838-26850857 MS.gene053514:CDS 30.0%
AAACATCATACACACCTCAA+TGG - chr4.3:26851168-26851187 None:intergenic 35.0%
AAGAGAGAAGAGATATTGAC+GGG - chr4.3:26850595-26850614 None:intergenic 35.0%
AAGAGCAGCTTCATCAATAT+TGG - chr4.3:26850767-26850786 None:intergenic 35.0%
ACATAATGCTCCAAAACTCA+AGG + chr4.3:26851094-26851113 MS.gene053514:CDS 35.0%
AGCATTATGTAGAACCTCAA+TGG - chr4.3:26851126-26851145 None:intergenic 35.0%
CATACTCCAATTGCAATTCT+CGG - chr4.3:26851060-26851079 None:intergenic 35.0%
CATGTGTTCTATCAACAAGA+TGG + chr4.3:26850098-26850117 MS.gene053514:CDS 35.0%
CTAAAGATTCTTCATCTCGA+AGG + chr4.3:26850460-26850479 MS.gene053514:intron 35.0%
CTTCGAGATGAAGAATCTTT+AGG - chr4.3:26850462-26850481 None:intergenic 35.0%
TATGTTATGGGAGTAGTCAA+TGG - chr4.3:26850727-26850746 None:intergenic 35.0%
TCAAAGACAAGTCAAGTTCT+TGG - chr4.3:26850327-26850346 None:intergenic 35.0%
TCAATCAAGGAAGTTAGAGA+AGG + chr4.3:26851493-26851512 MS.gene053514:CDS 35.0%
TCTACTACTTTCTCTGAATC+GGG - chr4.3:26851533-26851552 None:intergenic 35.0%
TCTCTGGTAATACAAAGTCA+AGG - chr4.3:26850150-26850169 None:intergenic 35.0%
TGCATATGGGTAGCAAAATA+TGG - chr4.3:26850921-26850940 None:intergenic 35.0%
! AGATGAAGAATCTTTAGGGA+CGG - chr4.3:26850457-26850476 None:intergenic 35.0%
! AGATTCTTCTGTTGATAGGA+AGG - chr4.3:26850071-26850090 None:intergenic 35.0%
! CTTGTGGTCTTAAAATTGTG+CGG + chr4.3:26850397-26850416 MS.gene053514:intron 35.0%
! TAAGAGATGGGGCATTAATT+TGG - chr4.3:26850678-26850697 None:intergenic 35.0%
! TGATATTTTCAGTGCGTCTT+AGG - chr4.3:26850222-26850241 None:intergenic 35.0%
!! AGACTTGTTGAAAGACATGA+TGG - chr4.3:26851404-26851423 None:intergenic 35.0%
!! AGATATTGACGGGTTGTTTA+AGG - chr4.3:26850585-26850604 None:intergenic 35.0%
!! CTAAGTATCGATAGTGTTCA+AGG + chr4.3:26850247-26850266 MS.gene053514:CDS 35.0%
!! TTCAAAGGCATTAGATCTCA+AGG + chr4.3:26850300-26850319 MS.gene053514:CDS 35.0%
AGGAGATTGTAAACTCGAGT+TGG + chr4.3:26851360-26851379 MS.gene053514:CDS 40.0%
GACTACTCCCATAACATATG+AGG + chr4.3:26850729-26850748 MS.gene053514:CDS 40.0%
GGAGATTGTAAACTCGAGTT+GGG + chr4.3:26851361-26851380 MS.gene053514:CDS 40.0%
GTAATACAAAGTCAAGGTCG+AGG - chr4.3:26850144-26850163 None:intergenic 40.0%
GTGTTCTATCAACAAGATGG+AGG + chr4.3:26850101-26850120 MS.gene053514:CDS 40.0%
! AGACATGATGGAGTTACTGA+TGG - chr4.3:26851392-26851411 None:intergenic 40.0%
!! ATTGTAAACTCGAGTTGGGT+GGG + chr4.3:26851365-26851384 MS.gene053514:CDS 40.0%
!!! GCGGCAATAAGGTTTTTTCA+TGG - chr4.3:26850354-26850373 None:intergenic 40.0%
AAAGTCAAGGTCGAGGATCT+TGG - chr4.3:26850137-26850156 None:intergenic 45.0%
CACTGTTTCGAGATTCTTGC+CGG - chr4.3:26849981-26850000 None:intergenic 45.0%
CATAGGGTTGCATCTAACGT+TGG + chr4.3:26850646-26850665 MS.gene053514:intron 45.0%
GAATTTCTTTGGACGACGCA+GGG - chr4.3:26850180-26850199 None:intergenic 45.0%
GGAAAGCTTAAGCGGCAATA+AGG - chr4.3:26850365-26850384 None:intergenic 45.0%
TCACACCTGGAAAGCTTAAG+CGG - chr4.3:26850373-26850392 None:intergenic 45.0%
TCTATCTGGATGTCCACATG+TGG + chr4.3:26850537-26850556 MS.gene053514:intron 45.0%
TGAATTTCTTTGGACGACGC+AGG - chr4.3:26850181-26850200 None:intergenic 45.0%
TGCACACACATGGGTTTCAA+AGG + chr4.3:26850285-26850304 MS.gene053514:CDS 45.0%
! ATGGCGAGATCCTTGAGTTT+TGG - chr4.3:26851107-26851126 None:intergenic 45.0%
! GATGGGGCATTAATTTGGAC+TGG - chr4.3:26850673-26850692 None:intergenic 45.0%
! TATTGCCGCTTAAGCTTTCC+AGG + chr4.3:26850365-26850384 MS.gene053514:CDS 45.0%
!! GATTGTAAACTCGAGTTGGG+TGG + chr4.3:26851364-26851383 MS.gene053514:CDS 45.0%
AACCACAGGATGCACACACA+TGG + chr4.3:26850275-26850294 MS.gene053514:CDS 50.0%
ACCACAGGATGCACACACAT+GGG + chr4.3:26850276-26850295 MS.gene053514:CDS 50.0%
ACTCAAGGATCTCGCCATTG+AGG + chr4.3:26851109-26851128 MS.gene053514:CDS 50.0%
ATCTGGATGTCCACATGTGG+AGG + chr4.3:26850540-26850559 MS.gene053514:intron 50.0%
CGGCAAGAATCTCGAAACAG+TGG + chr4.3:26849979-26849998 MS.gene053514:CDS 50.0%
TGTTCAAGGCTGTCAACCAC+AGG + chr4.3:26850261-26850280 MS.gene053514:CDS 50.0%
TTCCAGGTGTGAGTCACTTG+TGG + chr4.3:26850381-26850400 MS.gene053514:intron 50.0%
ACCCATGTGTGTGCATCCTG+TGG - chr4.3:26850280-26850299 None:intergenic 55.0%
GACCACAAGTGACTCACACC+TGG - chr4.3:26850386-26850405 None:intergenic 55.0%
TCTTTGGACGACGCAGGGTC+TGG - chr4.3:26850175-26850194 None:intergenic 60.0%
! GACGCAGGGTCTGGAATCTC+TGG - chr4.3:26850166-26850185 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 26849968 26851720 26849968 ID=MS.gene053514
chr4.3 mRNA 26849968 26851720 26849968 ID=MS.gene053514.t1;Parent=MS.gene053514
chr4.3 exon 26849968 26850386 26849968 ID=MS.gene053514.t1.exon1;Parent=MS.gene053514.t1
chr4.3 CDS 26849968 26850386 26849968 ID=cds.MS.gene053514.t1;Parent=MS.gene053514.t1
chr4.3 exon 26850651 26850870 26850651 ID=MS.gene053514.t1.exon2;Parent=MS.gene053514.t1
chr4.3 CDS 26850651 26850870 26850651 ID=cds.MS.gene053514.t1;Parent=MS.gene053514.t1
chr4.3 exon 26850975 26851172 26850975 ID=MS.gene053514.t1.exon3;Parent=MS.gene053514.t1
chr4.3 CDS 26850975 26851172 26850975 ID=cds.MS.gene053514.t1;Parent=MS.gene053514.t1
chr4.3 exon 26851332 26851598 26851332 ID=MS.gene053514.t1.exon4;Parent=MS.gene053514.t1
chr4.3 CDS 26851332 26851598 26851332 ID=cds.MS.gene053514.t1;Parent=MS.gene053514.t1
chr4.3 exon 26851706 26851720 26851706 ID=MS.gene053514.t1.exon5;Parent=MS.gene053514.t1
chr4.3 CDS 26851706 26851720 26851706 ID=cds.MS.gene053514.t1;Parent=MS.gene053514.t1
Gene Sequence

>MS.gene053514

ATGGAGGAAGCCGGCAAGAATCTCGAAACAGTGGCATGCTCTTACGAAGAACATGATCGATTAAGCAATCTCTCAGACGATTTGATTTTGCATATTTTGTCCTTCCTATCAACAGAAGAATCTTATAGAACATGTGTTCTATCAACAAGATGGAGGTTGATCTGCACCAAGATCCTCGACCTTGACTTTGTATTACCAGAGATTCCAGACCCTGCGTCGTCCAAAGAAATTCAATTTGTACATGCTGTTTTCCTAAGACGCACTGAAAATATCAGAAATCTAAGTATCGATAGTGTTCAAGGCTGTCAACCACAGGATGCACACACATGGGTTTCAAAGGCATTAGATCTCAAGGTCCAAGAACTTGACTTGTCTTTGATACTCCATGAAAAAACCTTATTGCCGCTTAAGCTTTCCAGGTGTGAGTCACTTGTGGTCTTAAAATTGTGCGGCAGAATTCAACTAACTTCTTTTGATGTATATTTACCGTCCCTAAAGATTCTTCATCTCGAAGGCACTGTTTTTTATTCTATCTCTGATGATCATTTCGAGTATGATCTTAATAAATTTCTATCTGGATGTCCACATGTGGAGGAATTATTTTTATACGACAGCCTTAAACAACCCGTCAATATCTCTTCTCTCTTATTGAGGAGATTACACCTATCTTTATTTATACATAGGGTTGCATCTAACGTTGGTCCAGTCCAAATTAATGCCCCATCTCTTAAAGTTCTTTCTGTTATTGATCATTATCCATTGACTACTCCCATAACATATGAGGTTGTAAACTTCTCCAATATTGATGAAGCTGCTCTTTTCATTAATTATTCATTTAACAACTTTTATACATTCATGAAAGGACTATCTAATGTCAAATCATTGACTCTCGGTTCCAAACATGTAAGTTTCATAATCTTTTTCTTTTCTTTCTTTTTTAATGATAAGTTCCATATTTTGCTACCCATATGCAAATCTCTTTTCATTTTTTTAATTTTCTTTTGCAGTTTCTCAGCATGAAGAACAAACTTGACAATGACAAAGTACTTCTCACTTTTCACAATTTATTATCTCTATCGGTTGAAATATCCGAGAATTGCAATTGGAGTATGCTTGTTACCTTTTTACATAATGCTCCAAAACTCAAGGATCTCGCCATTGAGGTTCTACATAATGCTCCAAAACTCAAGGATCTCGCCATTGAGGTGTGTATGATGTTTTTTTAACTATATTTGCACAAATTTTTAAAAAGGTAAAATATATTAATAAGCTTAAAATCTAGCACAAGAAATGCAAAGATTGAGTAAAAGATACACGAAGTTTGGAAGATTCTAAAGACAATTTTTAATATTGTTTACATGCAGAAAGAAATTGAAAAAAATTCTCAAAGAAAGGAGATTGTAAACTCGAGTTGGGTGGGACCATCAGTAACTCCATCATGTCTTTCAACAAGTCTCATTGCATTTGAATTTAAAGGAATTCAAAACATAAAAACTGAGTTGGACTTTGCGCTATATATTATAAATCAATCAAGGAAGTTAGAGAAGGTAAAGATTTTCACACCCGATTCAGAGAAAGTAGTAGAAAGAAGTTTACTCAAGGGGTCAAAGAAATCTTCGATACTAGTATGGGTATGAAGTATACACTTTCTTTTTTTCAATACTGAGTTTAATTATACTTTTTTTTAATGAAAAAAGTGAGTATGTTCATTTTGTTTTTTTGACAAGTGGTATGTTAGTATCTGTTAGTATGA

Protein sequence

>MS.gene053514.t1

MEEAGKNLETVACSYEEHDRLSNLSDDLILHILSFLSTEESYRTCVLSTRWRLICTKILDLDFVLPEIPDPASSKEIQFVHAVFLRRTENIRNLSIDSVQGCQPQDAHTWVSKALDLKVQELDLSLILHEKTLLPLKLSRVASNVGPVQINAPSLKVLSVIDHYPLTTPITYEVVNFSNIDEAALFINYSFNNFYTFMKGLSNVKSLTLGSKHFLSMKNKLDNDKVLLTFHNLLSLSVEISENCNWSMLVTFLHNAPKLKDLAIEVLHNAPKLKDLAIEKEIEKNSQRKEIVNSSWVGPSVTPSCLSTSLIAFEFKGIQNIKTELDFALYIINQSRKLEKVKIFTPDSEKVVERSLLKGSKKSSILVWYLLV