Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053514.t1 | AES59993.1 | 51.4 | 469 | 109 | 8 | 1 | 368 | 1 | 451 | 1.60E-103 | 386.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053514.t1 | O23257 | 32.4 | 185 | 109 | 5 | 19 | 190 | 2 | 183 | 5.0e-10 | 67.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053514.t1 | G7IBF9 | 51.4 | 469 | 109 | 8 | 1 | 368 | 1 | 451 | 1.1e-103 | 386.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053514.t1 | MTR_4g056040 | 62.500 | 232 | 65 | 6 | 142 | 368 | 253 | 467 | 5.19e-80 | 254 |
MS.gene053514.t1 | MTR_4g056040 | 41.613 | 310 | 112 | 7 | 11 | 277 | 1 | 284 | 2.26e-52 | 182 |
MS.gene053514.t1 | MTR_1g038710 | 63.319 | 229 | 62 | 6 | 144 | 368 | 241 | 451 | 2.80e-79 | 250 |
MS.gene053514.t1 | MTR_1g038710 | 53.953 | 215 | 73 | 6 | 1 | 191 | 1 | 213 | 1.45e-54 | 186 |
MS.gene053514.t1 | MTR_4g055990 | 62.996 | 227 | 67 | 6 | 147 | 368 | 265 | 479 | 8.33e-79 | 251 |
MS.gene053514.t1 | MTR_4g055990 | 45.783 | 249 | 68 | 6 | 11 | 209 | 1 | 232 | 3.60e-51 | 178 |
MS.gene053514.t1 | MTR_4g055990 | 62.996 | 227 | 67 | 6 | 147 | 368 | 265 | 479 | 1.08e-78 | 250 |
MS.gene053514.t1 | MTR_4g055990 | 47.034 | 236 | 61 | 5 | 11 | 196 | 1 | 222 | 4.55e-51 | 178 |
MS.gene053514.t1 | MTR_7g110920 | 61.039 | 231 | 78 | 9 | 145 | 368 | 95 | 320 | 1.52e-78 | 244 |
MS.gene053514.t1 | MTR_4g056020 | 61.233 | 227 | 66 | 6 | 147 | 368 | 228 | 437 | 1.80e-78 | 248 |
MS.gene053514.t1 | MTR_4g056020 | 54.717 | 212 | 66 | 5 | 11 | 209 | 1 | 195 | 2.85e-62 | 206 |
MS.gene053514.t1 | MTR_4g056030 | 51.361 | 294 | 114 | 9 | 80 | 368 | 168 | 437 | 4.69e-78 | 248 |
MS.gene053514.t1 | MTR_4g056030 | 52.804 | 214 | 71 | 5 | 11 | 211 | 1 | 197 | 8.92e-58 | 195 |
MS.gene053514.t1 | MTR_4g055580 | 54.023 | 261 | 85 | 7 | 126 | 368 | 321 | 564 | 1.50e-71 | 234 |
MS.gene053514.t1 | MTR_4g055580 | 41.325 | 317 | 109 | 9 | 11 | 277 | 92 | 381 | 8.49e-51 | 179 |
MS.gene053514.t1 | MTR_4g056070 | 54.502 | 211 | 75 | 5 | 122 | 328 | 243 | 436 | 3.02e-59 | 198 |
MS.gene053514.t1 | MTR_4g056070 | 44.664 | 253 | 70 | 6 | 11 | 210 | 1 | 236 | 5.33e-49 | 171 |
MS.gene053514.t1 | MTR_4g056020 | 64.103 | 156 | 40 | 3 | 214 | 368 | 1 | 141 | 8.85e-58 | 185 |
MS.gene053514.t1 | MTR_1g090883 | 55.026 | 189 | 71 | 4 | 1 | 177 | 1 | 187 | 6.13e-50 | 172 |
MS.gene053514.t1 | MTR_1g090883 | 60.630 | 127 | 43 | 5 | 144 | 266 | 235 | 358 | 9.34e-36 | 134 |
MS.gene053514.t1 | MTR_1g090900 | 65.909 | 132 | 42 | 2 | 11 | 139 | 1 | 132 | 9.25e-48 | 161 |
MS.gene053514.t1 | MTR_4g093690 | 52.023 | 173 | 65 | 4 | 1 | 158 | 1 | 170 | 6.79e-44 | 153 |
MS.gene053514.t1 | MTR_1g090890 | 63.953 | 86 | 29 | 1 | 283 | 368 | 33 | 116 | 2.46e-29 | 110 |
MS.gene053514.t1 | MTR_4g056010 | 54.737 | 95 | 30 | 2 | 79 | 160 | 2 | 96 | 3.93e-23 | 92.8 |
MS.gene053514.t1 | MTR_1g041245 | 25.556 | 360 | 217 | 9 | 19 | 343 | 11 | 354 | 1.56e-20 | 92.4 |
MS.gene053514.t1 | MTR_0543s0010 | 28.045 | 353 | 205 | 13 | 19 | 343 | 86 | 417 | 5.25e-19 | 88.6 |
MS.gene053514.t1 | MTR_0492s0020 | 28.045 | 353 | 205 | 13 | 19 | 343 | 86 | 417 | 5.45e-19 | 88.2 |
MS.gene053514.t1 | MTR_3g108560 | 27.913 | 369 | 196 | 13 | 16 | 343 | 17 | 356 | 2.34e-18 | 86.3 |
MS.gene053514.t1 | MTR_7g033990 | 25.389 | 386 | 210 | 13 | 19 | 357 | 11 | 365 | 1.98e-17 | 83.6 |
MS.gene053514.t1 | MTR_2g005990 | 23.821 | 403 | 230 | 12 | 19 | 364 | 6 | 388 | 9.09e-17 | 81.3 |
MS.gene053514.t1 | MTR_7g032380 | 25.000 | 348 | 204 | 11 | 19 | 343 | 11 | 324 | 1.11e-16 | 80.9 |
MS.gene053514.t1 | MTR_7g034115 | 26.184 | 359 | 213 | 14 | 19 | 343 | 11 | 351 | 1.61e-15 | 77.8 |
MS.gene053514.t1 | MTR_3g082890 | 25.464 | 377 | 216 | 13 | 16 | 343 | 94 | 454 | 2.45e-15 | 77.4 |
MS.gene053514.t1 | MTR_7g110910 | 72.917 | 48 | 13 | 0 | 1 | 48 | 148 | 195 | 3.52e-15 | 73.9 |
MS.gene053514.t1 | MTR_7g056433 | 25.401 | 374 | 207 | 15 | 16 | 343 | 9 | 356 | 4.96e-15 | 76.3 |
MS.gene053514.t1 | MTR_3g107100 | 26.509 | 381 | 201 | 15 | 16 | 346 | 8 | 359 | 9.34e-15 | 75.5 |
MS.gene053514.t1 | MTR_5g012840 | 25.309 | 324 | 178 | 10 | 44 | 348 | 14 | 292 | 9.47e-15 | 74.7 |
MS.gene053514.t1 | MTR_7g098510 | 25.995 | 377 | 191 | 15 | 19 | 343 | 18 | 358 | 1.24e-14 | 75.1 |
MS.gene053514.t1 | MTR_1g053025 | 26.355 | 406 | 214 | 18 | 19 | 364 | 2 | 382 | 2.23e-14 | 74.3 |
MS.gene053514.t1 | MTR_2g007450 | 23.741 | 417 | 228 | 12 | 19 | 364 | 16 | 413 | 6.05e-14 | 73.2 |
MS.gene053514.t1 | MTR_1g085120 | 24.439 | 401 | 224 | 13 | 1 | 355 | 83 | 450 | 9.38e-14 | 72.8 |
MS.gene053514.t1 | MTR_1g085120 | 24.623 | 398 | 221 | 13 | 4 | 355 | 161 | 525 | 1.18e-13 | 72.4 |
MS.gene053514.t1 | MTR_7g032370 | 23.907 | 343 | 209 | 10 | 30 | 343 | 1 | 320 | 1.33e-13 | 71.6 |
MS.gene053514.t1 | MTR_8g085430 | 22.941 | 340 | 193 | 10 | 19 | 343 | 11 | 296 | 1.30e-12 | 68.6 |
MS.gene053514.t1 | MTR_7g098480 | 26.302 | 384 | 221 | 12 | 19 | 364 | 18 | 377 | 1.36e-12 | 69.3 |
MS.gene053514.t1 | MTR_4g039440 | 25.995 | 377 | 193 | 15 | 19 | 343 | 34 | 376 | 7.27e-12 | 66.6 |
MS.gene053514.t1 | MTR_7g034110 | 24.242 | 330 | 185 | 11 | 19 | 328 | 11 | 295 | 1.67e-11 | 65.5 |
MS.gene053514.t1 | MTR_7g055943 | 25.798 | 376 | 213 | 13 | 13 | 343 | 34 | 388 | 1.83e-11 | 65.5 |
MS.gene053514.t1 | MTR_5g045170 | 22.785 | 395 | 189 | 14 | 21 | 347 | 16 | 362 | 2.99e-11 | 64.7 |
MS.gene053514.t1 | MTR_6g040270 | 24.444 | 360 | 211 | 12 | 21 | 343 | 10 | 345 | 6.03e-11 | 63.9 |
MS.gene053514.t1 | MTR_7g056277 | 23.562 | 365 | 221 | 8 | 19 | 348 | 259 | 600 | 8.57e-11 | 63.9 |
MS.gene053514.t1 | MTR_3g108560 | 35.484 | 155 | 87 | 5 | 16 | 160 | 17 | 168 | 9.67e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053514.t1 | AT3G59190 | 25.275 | 455 | 204 | 17 | 19 | 344 | 12 | 459 | 9.11e-18 | 85.1 |
MS.gene053514.t1 | AT3G59190 | 25.936 | 374 | 157 | 12 | 19 | 276 | 12 | 381 | 2.09e-16 | 80.5 |
MS.gene053514.t1 | AT3G59000 | 24.260 | 338 | 186 | 9 | 19 | 345 | 2 | 280 | 2.92e-13 | 70.5 |
Find 66 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCATTGCATTTGAATTTAA+AGG | 0.118708 | 4.3:+26851422 | MS.gene053514:CDS |
TAAGAGATGGGGCATTAATT+TGG | 0.263787 | 4.3:-26850675 | None:intergenic |
AGAAATCTTCGATACTAGTA+TGG | 0.269834 | 4.3:+26851576 | MS.gene053514:CDS |
CACTGTTTCGAGATTCTTGC+CGG | 0.280930 | 4.3:-26849978 | None:intergenic |
TTCTACTACTTTCTCTGAAT+CGG | 0.286108 | 4.3:-26851531 | None:intergenic |
TATTGCCGCTTAAGCTTTCC+AGG | 0.287296 | 4.3:+26850365 | MS.gene053514:CDS |
ATGGCGAGATCCTTGAGTTT+TGG | 0.295775 | 4.3:-26851104 | None:intergenic |
ATGGCGAGATCCTTGAGTTT+TGG | 0.295775 | 4.3:-26851146 | None:intergenic |
ATGTACAAATTGAATTTCTT+TGG | 0.307589 | 4.3:-26850188 | None:intergenic |
AAGAGCAGCTTCATCAATAT+TGG | 0.323876 | 4.3:-26850764 | None:intergenic |
GATTATGAAACTTACATGTT+TGG | 0.324865 | 4.3:-26850863 | None:intergenic |
GTTTACAACCTCATATGTTA+TGG | 0.336392 | 4.3:-26850737 | None:intergenic |
TATAAGATTCTTCTGTTGAT+AGG | 0.352003 | 4.3:-26850072 | None:intergenic |
GGAAAGCTTAAGCGGCAATA+AGG | 0.373735 | 4.3:-26850362 | None:intergenic |
TCAAAGACAAGTCAAGTTCT+TGG | 0.384504 | 4.3:-26850324 | None:intergenic |
CTAAGTATCGATAGTGTTCA+AGG | 0.391147 | 4.3:+26850247 | MS.gene053514:CDS |
TCTTTGGACGACGCAGGGTC+TGG | 0.400128 | 4.3:-26850172 | None:intergenic |
TCTACTACTTTCTCTGAATC+GGG | 0.403758 | 4.3:-26851530 | None:intergenic |
CATACTCCAATTGCAATTCT+CGG | 0.424606 | 4.3:-26851057 | None:intergenic |
TTTACAACCTCATATGTTAT+GGG | 0.428309 | 4.3:-26850736 | None:intergenic |
AAAGTCAAGGTCGAGGATCT+TGG | 0.450199 | 4.3:-26850134 | None:intergenic |
GACGCAGGGTCTGGAATCTC+TGG | 0.459313 | 4.3:-26850163 | None:intergenic |
CAGAAAGAACTTTAAGAGAT+GGG | 0.479739 | 4.3:-26850687 | None:intergenic |
AAATATCCGAGAATTGCAAT+TGG | 0.484292 | 4.3:+26851051 | MS.gene053514:CDS |
TCACAATTTATTATCTCTAT+CGG | 0.488933 | 4.3:+26851025 | MS.gene053514:CDS |
ACAGAAAGAACTTTAAGAGA+TGG | 0.499128 | 4.3:-26850688 | None:intergenic |
GACTACTCCCATAACATATG+AGG | 0.502185 | 4.3:+26850729 | MS.gene053514:CDS |
AGGAGATTGTAAACTCGAGT+TGG | 0.519881 | 4.3:+26851360 | MS.gene053514:CDS |
GGAGATTGTAAACTCGAGTT+GGG | 0.524198 | 4.3:+26851361 | MS.gene053514:CDS |
TATGTTATGGGAGTAGTCAA+TGG | 0.525460 | 4.3:-26850724 | None:intergenic |
GATGGGGCATTAATTTGGAC+TGG | 0.526954 | 4.3:-26850670 | None:intergenic |
AGATTCTTCTGTTGATAGGA+AGG | 0.529657 | 4.3:-26850068 | None:intergenic |
TTTCTTCATATGGAGGAAGC+CGG | 0.530262 | 4.3:+26849959 | None:intergenic |
TGAATTTCTTTGGACGACGC+AGG | 0.534570 | 4.3:-26850178 | None:intergenic |
TATATATTATAAATCAATCA+AGG | 0.537921 | 4.3:+26851480 | MS.gene053514:CDS |
AGTAGAAAGAAGTTTACTCA+AGG | 0.539582 | 4.3:+26851547 | MS.gene053514:CDS |
GAATTTCTTTGGACGACGCA+GGG | 0.539953 | 4.3:-26850177 | None:intergenic |
AACCACAGGATGCACACACA+TGG | 0.540159 | 4.3:+26850275 | MS.gene053514:CDS |
TTCAAAGGCATTAGATCTCA+AGG | 0.542872 | 4.3:+26850300 | MS.gene053514:CDS |
GTAGAAAGAAGTTTACTCAA+GGG | 0.543204 | 4.3:+26851548 | MS.gene053514:CDS |
AAACATCATACACACCTCAA+TGG | 0.550288 | 4.3:-26851165 | None:intergenic |
TGCACACACATGGGTTTCAA+AGG | 0.552909 | 4.3:+26850285 | MS.gene053514:CDS |
ACATAATGCTCCAAAACTCA+AGG | 0.554768 | 4.3:+26851094 | MS.gene053514:CDS |
ACTCAAGGATCTCGCCATTG+AGG | 0.556897 | 4.3:+26851109 | MS.gene053514:CDS |
ACTCAAGGATCTCGCCATTG+AGG | 0.556897 | 4.3:+26851151 | MS.gene053514:CDS |
CATGTGTTCTATCAACAAGA+TGG | 0.568475 | 4.3:+26850098 | MS.gene053514:CDS |
TGTTCAAGGCTGTCAACCAC+AGG | 0.574584 | 4.3:+26850261 | MS.gene053514:CDS |
GAAATCTTCGATACTAGTAT+GGG | 0.575214 | 4.3:+26851577 | MS.gene053514:CDS |
AGCATTATGTAGAACCTCAA+TGG | 0.575521 | 4.3:-26851123 | None:intergenic |
ATTGTAAACTCGAGTTGGGT+GGG | 0.577800 | 4.3:+26851365 | MS.gene053514:CDS |
GATTGTAAACTCGAGTTGGG+TGG | 0.581438 | 4.3:+26851364 | MS.gene053514:CDS |
ACATAATGCTCCAAAACTCA+AGG | 0.583158 | 4.3:+26851136 | MS.gene053514:CDS |
AATGTCAAATCATTGACTCT+CGG | 0.589479 | 4.3:+26850838 | MS.gene053514:CDS |
TCACACCTGGAAAGCTTAAG+CGG | 0.589517 | 4.3:-26850370 | None:intergenic |
AGACTTGTTGAAAGACATGA+TGG | 0.601053 | 4.3:-26851401 | None:intergenic |
TAGAAAGAAGTTTACTCAAG+GGG | 0.610799 | 4.3:+26851549 | MS.gene053514:CDS |
GTAATACAAAGTCAAGGTCG+AGG | 0.611127 | 4.3:-26850141 | None:intergenic |
ACCCATGTGTGTGCATCCTG+TGG | 0.612912 | 4.3:-26850277 | None:intergenic |
AGAAAGAACTTTAAGAGATG+GGG | 0.624862 | 4.3:-26850686 | None:intergenic |
TCAATCAAGGAAGTTAGAGA+AGG | 0.628063 | 4.3:+26851493 | MS.gene053514:CDS |
CATAGGGTTGCATCTAACGT+TGG | 0.653512 | 4.3:+26850646 | MS.gene053514:intron |
TCTCTGGTAATACAAAGTCA+AGG | 0.656642 | 4.3:-26850147 | None:intergenic |
CGGCAAGAATCTCGAAACAG+TGG | 0.657960 | 4.3:+26849979 | MS.gene053514:CDS |
ACCACAGGATGCACACACAT+GGG | 0.658386 | 4.3:+26850276 | MS.gene053514:CDS |
AGACATGATGGAGTTACTGA+TGG | 0.669795 | 4.3:-26851389 | None:intergenic |
GTGTTCTATCAACAAGATGG+AGG | 0.688828 | 4.3:+26850101 | MS.gene053514:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATTATAAATCAATCA+AGG | + | chr4.3:26851480-26851499 | MS.gene053514:CDS | 10.0% |
!!! | ATTTGCACAAATTTTTAAAA+AGG | + | chr4.3:26851198-26851217 | MS.gene053514:intron | 15.0% |
!! | ATGTACAAATTGAATTTCTT+TGG | - | chr4.3:26850191-26850210 | None:intergenic | 20.0% |
!! | GATCTTAATAAATTTCTATC+TGG | + | chr4.3:26850523-26850542 | MS.gene053514:intron | 20.0% |
!! | TCACAATTTATTATCTCTAT+CGG | + | chr4.3:26851025-26851044 | MS.gene053514:CDS | 20.0% |
!! | TGAAAAAAATTCTCAAAGAA+AGG | + | chr4.3:26851340-26851359 | MS.gene053514:CDS | 20.0% |
!!! | AACTTTTATACATTCATGAA+AGG | + | chr4.3:26850808-26850827 | MS.gene053514:CDS | 20.0% |
!!! | ACCTATCTTTATTTATACAT+AGG | + | chr4.3:26850629-26850648 | MS.gene053514:intron | 20.0% |
!!! | CCTATCTTTATTTATACATA+GGG | + | chr4.3:26850630-26850649 | MS.gene053514:intron | 20.0% |
! | AATGAAAAGAGATTTGCATA+TGG | - | chr4.3:26850935-26850954 | None:intergenic | 25.0% |
! | ATGAAAAGAGATTTGCATAT+GGG | - | chr4.3:26850934-26850953 | None:intergenic | 25.0% |
! | CCCTATGTATAAATAAAGAT+AGG | - | chr4.3:26850633-26850652 | None:intergenic | 25.0% |
! | CTCATTGCATTTGAATTTAA+AGG | + | chr4.3:26851422-26851441 | MS.gene053514:CDS | 25.0% |
! | GATTATGAAACTTACATGTT+TGG | - | chr4.3:26850866-26850885 | None:intergenic | 25.0% |
! | TATAAGATTCTTCTGTTGAT+AGG | - | chr4.3:26850075-26850094 | None:intergenic | 25.0% |
! | TCAAAACATAAAAACTGAGT+TGG | + | chr4.3:26851448-26851467 | MS.gene053514:CDS | 25.0% |
! | TTTACAACCTCATATGTTAT+GGG | - | chr4.3:26850739-26850758 | None:intergenic | 25.0% |
!!! | CATTTTGTTTTTTTGACAAG+TGG | + | chr4.3:26851675-26851694 | MS.gene053514:intron | 25.0% |
!!! | TTTTGGAGCATTATGTAAAA+AGG | - | chr4.3:26851090-26851109 | None:intergenic | 25.0% |
AAAAATAATTCCTCCACATG+TGG | - | chr4.3:26850553-26850572 | None:intergenic | 30.0% | |
AAATATCCGAGAATTGCAAT+TGG | + | chr4.3:26851051-26851070 | MS.gene053514:CDS | 30.0% | |
AGAAATCTTCGATACTAGTA+TGG | + | chr4.3:26851576-26851595 | MS.gene053514:CDS | 30.0% | |
AGTAAAAGATACACGAAGTT+TGG | + | chr4.3:26851270-26851289 | MS.gene053514:intron | 30.0% | |
AGTAGAAAGAAGTTTACTCA+AGG | + | chr4.3:26851547-26851566 | MS.gene053514:CDS | 30.0% | |
ATATCTCTTCTCTCTTATTG+AGG | + | chr4.3:26850599-26850618 | MS.gene053514:intron | 30.0% | |
GAAATCTTCGATACTAGTAT+GGG | + | chr4.3:26851577-26851596 | MS.gene053514:CDS | 30.0% | |
GTAGAAAGAAGTTTACTCAA+GGG | + | chr4.3:26851548-26851567 | MS.gene053514:CDS | 30.0% | |
GTTTACAACCTCATATGTTA+TGG | - | chr4.3:26850740-26850759 | None:intergenic | 30.0% | |
TAAGAGAGAAGAGATATTGA+CGG | - | chr4.3:26850596-26850615 | None:intergenic | 30.0% | |
TAGAAAGAAGTTTACTCAAG+GGG | + | chr4.3:26851549-26851568 | MS.gene053514:CDS | 30.0% | |
TTCGAGATGAAGAATCTTTA+GGG | - | chr4.3:26850461-26850480 | None:intergenic | 30.0% | |
TTCTACTACTTTCTCTGAAT+CGG | - | chr4.3:26851534-26851553 | None:intergenic | 30.0% | |
! | ACAGAAAGAACTTTAAGAGA+TGG | - | chr4.3:26850691-26850710 | None:intergenic | 30.0% |
! | AGAAAGAACTTTAAGAGATG+GGG | - | chr4.3:26850689-26850708 | None:intergenic | 30.0% |
! | CAGAAAGAACTTTAAGAGAT+GGG | - | chr4.3:26850690-26850709 | None:intergenic | 30.0% |
!! | AATGTCAAATCATTGACTCT+CGG | + | chr4.3:26850838-26850857 | MS.gene053514:CDS | 30.0% |
AAACATCATACACACCTCAA+TGG | - | chr4.3:26851168-26851187 | None:intergenic | 35.0% | |
AAGAGAGAAGAGATATTGAC+GGG | - | chr4.3:26850595-26850614 | None:intergenic | 35.0% | |
AAGAGCAGCTTCATCAATAT+TGG | - | chr4.3:26850767-26850786 | None:intergenic | 35.0% | |
ACATAATGCTCCAAAACTCA+AGG | + | chr4.3:26851094-26851113 | MS.gene053514:CDS | 35.0% | |
AGCATTATGTAGAACCTCAA+TGG | - | chr4.3:26851126-26851145 | None:intergenic | 35.0% | |
CATACTCCAATTGCAATTCT+CGG | - | chr4.3:26851060-26851079 | None:intergenic | 35.0% | |
CATGTGTTCTATCAACAAGA+TGG | + | chr4.3:26850098-26850117 | MS.gene053514:CDS | 35.0% | |
CTAAAGATTCTTCATCTCGA+AGG | + | chr4.3:26850460-26850479 | MS.gene053514:intron | 35.0% | |
CTTCGAGATGAAGAATCTTT+AGG | - | chr4.3:26850462-26850481 | None:intergenic | 35.0% | |
TATGTTATGGGAGTAGTCAA+TGG | - | chr4.3:26850727-26850746 | None:intergenic | 35.0% | |
TCAAAGACAAGTCAAGTTCT+TGG | - | chr4.3:26850327-26850346 | None:intergenic | 35.0% | |
TCAATCAAGGAAGTTAGAGA+AGG | + | chr4.3:26851493-26851512 | MS.gene053514:CDS | 35.0% | |
TCTACTACTTTCTCTGAATC+GGG | - | chr4.3:26851533-26851552 | None:intergenic | 35.0% | |
TCTCTGGTAATACAAAGTCA+AGG | - | chr4.3:26850150-26850169 | None:intergenic | 35.0% | |
TGCATATGGGTAGCAAAATA+TGG | - | chr4.3:26850921-26850940 | None:intergenic | 35.0% | |
! | AGATGAAGAATCTTTAGGGA+CGG | - | chr4.3:26850457-26850476 | None:intergenic | 35.0% |
! | AGATTCTTCTGTTGATAGGA+AGG | - | chr4.3:26850071-26850090 | None:intergenic | 35.0% |
! | CTTGTGGTCTTAAAATTGTG+CGG | + | chr4.3:26850397-26850416 | MS.gene053514:intron | 35.0% |
! | TAAGAGATGGGGCATTAATT+TGG | - | chr4.3:26850678-26850697 | None:intergenic | 35.0% |
! | TGATATTTTCAGTGCGTCTT+AGG | - | chr4.3:26850222-26850241 | None:intergenic | 35.0% |
!! | AGACTTGTTGAAAGACATGA+TGG | - | chr4.3:26851404-26851423 | None:intergenic | 35.0% |
!! | AGATATTGACGGGTTGTTTA+AGG | - | chr4.3:26850585-26850604 | None:intergenic | 35.0% |
!! | CTAAGTATCGATAGTGTTCA+AGG | + | chr4.3:26850247-26850266 | MS.gene053514:CDS | 35.0% |
!! | TTCAAAGGCATTAGATCTCA+AGG | + | chr4.3:26850300-26850319 | MS.gene053514:CDS | 35.0% |
AGGAGATTGTAAACTCGAGT+TGG | + | chr4.3:26851360-26851379 | MS.gene053514:CDS | 40.0% | |
GACTACTCCCATAACATATG+AGG | + | chr4.3:26850729-26850748 | MS.gene053514:CDS | 40.0% | |
GGAGATTGTAAACTCGAGTT+GGG | + | chr4.3:26851361-26851380 | MS.gene053514:CDS | 40.0% | |
GTAATACAAAGTCAAGGTCG+AGG | - | chr4.3:26850144-26850163 | None:intergenic | 40.0% | |
GTGTTCTATCAACAAGATGG+AGG | + | chr4.3:26850101-26850120 | MS.gene053514:CDS | 40.0% | |
! | AGACATGATGGAGTTACTGA+TGG | - | chr4.3:26851392-26851411 | None:intergenic | 40.0% |
!! | ATTGTAAACTCGAGTTGGGT+GGG | + | chr4.3:26851365-26851384 | MS.gene053514:CDS | 40.0% |
!!! | GCGGCAATAAGGTTTTTTCA+TGG | - | chr4.3:26850354-26850373 | None:intergenic | 40.0% |
AAAGTCAAGGTCGAGGATCT+TGG | - | chr4.3:26850137-26850156 | None:intergenic | 45.0% | |
CACTGTTTCGAGATTCTTGC+CGG | - | chr4.3:26849981-26850000 | None:intergenic | 45.0% | |
CATAGGGTTGCATCTAACGT+TGG | + | chr4.3:26850646-26850665 | MS.gene053514:intron | 45.0% | |
GAATTTCTTTGGACGACGCA+GGG | - | chr4.3:26850180-26850199 | None:intergenic | 45.0% | |
GGAAAGCTTAAGCGGCAATA+AGG | - | chr4.3:26850365-26850384 | None:intergenic | 45.0% | |
TCACACCTGGAAAGCTTAAG+CGG | - | chr4.3:26850373-26850392 | None:intergenic | 45.0% | |
TCTATCTGGATGTCCACATG+TGG | + | chr4.3:26850537-26850556 | MS.gene053514:intron | 45.0% | |
TGAATTTCTTTGGACGACGC+AGG | - | chr4.3:26850181-26850200 | None:intergenic | 45.0% | |
TGCACACACATGGGTTTCAA+AGG | + | chr4.3:26850285-26850304 | MS.gene053514:CDS | 45.0% | |
! | ATGGCGAGATCCTTGAGTTT+TGG | - | chr4.3:26851107-26851126 | None:intergenic | 45.0% |
! | GATGGGGCATTAATTTGGAC+TGG | - | chr4.3:26850673-26850692 | None:intergenic | 45.0% |
! | TATTGCCGCTTAAGCTTTCC+AGG | + | chr4.3:26850365-26850384 | MS.gene053514:CDS | 45.0% |
!! | GATTGTAAACTCGAGTTGGG+TGG | + | chr4.3:26851364-26851383 | MS.gene053514:CDS | 45.0% |
AACCACAGGATGCACACACA+TGG | + | chr4.3:26850275-26850294 | MS.gene053514:CDS | 50.0% | |
ACCACAGGATGCACACACAT+GGG | + | chr4.3:26850276-26850295 | MS.gene053514:CDS | 50.0% | |
ACTCAAGGATCTCGCCATTG+AGG | + | chr4.3:26851109-26851128 | MS.gene053514:CDS | 50.0% | |
ATCTGGATGTCCACATGTGG+AGG | + | chr4.3:26850540-26850559 | MS.gene053514:intron | 50.0% | |
CGGCAAGAATCTCGAAACAG+TGG | + | chr4.3:26849979-26849998 | MS.gene053514:CDS | 50.0% | |
TGTTCAAGGCTGTCAACCAC+AGG | + | chr4.3:26850261-26850280 | MS.gene053514:CDS | 50.0% | |
TTCCAGGTGTGAGTCACTTG+TGG | + | chr4.3:26850381-26850400 | MS.gene053514:intron | 50.0% | |
ACCCATGTGTGTGCATCCTG+TGG | - | chr4.3:26850280-26850299 | None:intergenic | 55.0% | |
GACCACAAGTGACTCACACC+TGG | - | chr4.3:26850386-26850405 | None:intergenic | 55.0% | |
TCTTTGGACGACGCAGGGTC+TGG | - | chr4.3:26850175-26850194 | None:intergenic | 60.0% | |
! | GACGCAGGGTCTGGAATCTC+TGG | - | chr4.3:26850166-26850185 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 26849968 | 26851720 | 26849968 | ID=MS.gene053514 |
chr4.3 | mRNA | 26849968 | 26851720 | 26849968 | ID=MS.gene053514.t1;Parent=MS.gene053514 |
chr4.3 | exon | 26849968 | 26850386 | 26849968 | ID=MS.gene053514.t1.exon1;Parent=MS.gene053514.t1 |
chr4.3 | CDS | 26849968 | 26850386 | 26849968 | ID=cds.MS.gene053514.t1;Parent=MS.gene053514.t1 |
chr4.3 | exon | 26850651 | 26850870 | 26850651 | ID=MS.gene053514.t1.exon2;Parent=MS.gene053514.t1 |
chr4.3 | CDS | 26850651 | 26850870 | 26850651 | ID=cds.MS.gene053514.t1;Parent=MS.gene053514.t1 |
chr4.3 | exon | 26850975 | 26851172 | 26850975 | ID=MS.gene053514.t1.exon3;Parent=MS.gene053514.t1 |
chr4.3 | CDS | 26850975 | 26851172 | 26850975 | ID=cds.MS.gene053514.t1;Parent=MS.gene053514.t1 |
chr4.3 | exon | 26851332 | 26851598 | 26851332 | ID=MS.gene053514.t1.exon4;Parent=MS.gene053514.t1 |
chr4.3 | CDS | 26851332 | 26851598 | 26851332 | ID=cds.MS.gene053514.t1;Parent=MS.gene053514.t1 |
chr4.3 | exon | 26851706 | 26851720 | 26851706 | ID=MS.gene053514.t1.exon5;Parent=MS.gene053514.t1 |
chr4.3 | CDS | 26851706 | 26851720 | 26851706 | ID=cds.MS.gene053514.t1;Parent=MS.gene053514.t1 |
Gene Sequence |
Protein sequence |