AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98269

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98269.t1 MTR_7g056020 85.015 327 42 1 1 327 1 320 0.0 556
MS.gene98269.t1 MTR_3g108560 51.057 331 142 7 8 327 14 335 7.33e-92 279
MS.gene98269.t1 MTR_0492s0020 50.898 334 138 7 5 327 78 396 3.46e-87 268
MS.gene98269.t1 MTR_0543s0010 50.898 334 138 7 5 327 78 396 8.66e-87 268
MS.gene98269.t1 MTR_3g108560 48.639 294 131 7 8 290 14 298 1.35e-70 222
MS.gene98269.t1 MTR_4g080610 45.141 319 138 4 18 327 14 304 1.43e-70 223
MS.gene98269.t1 MTR_3g108150 45.161 341 157 9 1 323 1 329 3.45e-70 223
MS.gene98269.t1 MTR_7g088260 44.000 325 157 8 15 323 90 405 5.06e-66 215
MS.gene98269.t1 MTR_3g109982 57.635 203 79 3 129 327 222 421 8.13e-58 199
MS.gene98269.t1 MTR_3g109982 47.980 198 94 2 16 206 13 208 2.01e-44 162
MS.gene98269.t1 MTR_3g087260 55.122 205 82 5 129 327 203 403 3.00e-52 179
MS.gene98269.t1 MTR_3g087260 46.961 181 83 3 16 194 12 181 3.54e-36 135
MS.gene98269.t1 MTR_3g110010 47.980 198 94 2 16 206 13 208 1.68e-44 162
MS.gene98269.t1 MTR_3g110010 55.152 165 67 3 129 289 222 383 7.30e-38 143
MS.gene98269.t1 MTR_7g098510 34.891 321 191 6 16 323 18 333 2.01e-44 156
MS.gene98269.t1 MTR_7g098570 35.385 325 184 6 16 323 20 335 3.10e-43 155
MS.gene98269.t1 MTR_7g098480 36.391 327 176 8 16 323 18 331 5.37e-41 149
MS.gene98269.t1 MTR_7g115270 34.582 347 187 8 8 323 7 344 1.75e-39 143
MS.gene98269.t1 MTR_7g032380 33.127 323 175 9 16 327 11 303 4.59e-39 141
MS.gene98269.t1 MTR_1g041245 33.846 325 192 9 16 323 11 329 5.03e-38 139
MS.gene98269.t1 MTR_7g034115 34.056 323 191 8 16 323 11 326 1.85e-36 135
MS.gene98269.t1 MTR_3g036250 34.251 327 183 8 13 323 2 312 9.58e-36 132
MS.gene98269.t1 MTR_7g056433 33.432 338 191 8 8 322 4 330 5.58e-35 131
MS.gene98269.t1 MTR_3g023630 31.915 329 187 8 16 323 8 320 6.21e-34 128
MS.gene98269.t1 MTR_3g040700 33.127 323 185 7 16 323 43 349 1.81e-33 128
MS.gene98269.t1 MTR_7g033915 32.229 332 180 8 8 323 6 308 3.58e-32 123
MS.gene98269.t1 MTR_7g032370 32.476 311 186 9 28 327 2 299 2.61e-30 118
MS.gene98269.t1 MTR_5g045510 31.065 338 168 12 16 323 12 314 1.09e-28 114
MS.gene98269.t1 MTR_7g033990 31.902 326 194 9 16 323 11 326 1.82e-28 114
MS.gene98269.t1 MTR_5g007410 32.047 337 184 11 18 323 28 350 5.77e-28 113
MS.gene98269.t1 MTR_5g073420 31.003 329 186 13 16 323 11 319 4.42e-27 109
MS.gene98269.t1 MTR_7g060470 29.395 347 196 13 15 323 2 337 1.73e-26 108
MS.gene98269.t1 MTR_3g082890 31.686 344 194 13 13 323 94 429 1.79e-26 109
MS.gene98269.t1 MTR_3g105060 30.341 323 193 9 16 323 14 319 2.28e-26 107
MS.gene98269.t1 MTR_7g026500 31.361 338 190 12 16 323 14 339 6.94e-26 106
MS.gene98269.t1 MTR_1g085120 29.464 336 197 9 15 323 91 413 7.79e-26 107
MS.gene98269.t1 MTR_7g114710 29.787 329 178 10 16 323 13 309 8.31e-26 106
MS.gene98269.t1 MTR_7g034110 31.193 327 169 9 8 323 6 287 1.03e-25 105
MS.gene98269.t1 MTR_7g056430 30.606 330 178 10 15 323 8 307 1.13e-25 108
MS.gene98269.t1 MTR_7g056420 30.606 330 178 10 15 323 8 307 1.17e-25 108
MS.gene98269.t1 MTR_1g085120 29.464 336 197 9 15 323 166 488 1.51e-25 107
MS.gene98269.t1 MTR_5g045170 31.884 345 169 12 18 323 16 333 1.89e-25 105
MS.gene98269.t1 MTR_3g107160 30.435 345 198 12 7 323 1 331 3.48e-25 104
MS.gene98269.t1 MTR_6g045333 29.942 344 189 12 16 323 61 388 4.37e-25 105
MS.gene98269.t1 MTR_2g007500 29.730 333 193 9 16 323 14 330 7.49e-25 102
MS.gene98269.t1 MTR_3g107100 28.235 340 209 10 8 323 3 331 7.53e-25 103
MS.gene98269.t1 MTR_6g011460 31.231 333 184 12 16 322 46 359 8.97e-25 103
MS.gene98269.t1 MTR_5g058000 32.722 327 183 12 16 323 8 316 1.05e-24 103
MS.gene98269.t1 MTR_7g056287 30.909 330 190 13 15 323 2 314 1.47e-24 102
MS.gene98269.t1 MTR_3g071850 29.706 340 195 10 16 323 24 351 2.15e-24 104
MS.gene98269.t1 MTR_7g007080 30.748 361 164 12 14 323 2 327 3.72e-24 102
MS.gene98269.t1 MTR_0009s0080 30.904 343 180 15 18 323 20 342 5.99e-24 101
MS.gene98269.t1 MTR_7g056277 30.631 333 193 13 12 323 255 570 8.36e-24 102
MS.gene98269.t1 MTR_4g039440 28.824 340 188 13 16 323 34 351 7.67e-23 98.6
MS.gene98269.t1 MTR_6g040270 30.088 339 194 12 9 323 1 320 1.05e-22 97.8
MS.gene98269.t1 MTR_3g082890 28.871 381 193 12 13 323 14 386 1.52e-22 97.8
MS.gene98269.t1 MTR_1089s0010 31.065 338 190 12 9 323 1 318 1.94e-22 97.1
MS.gene98269.t1 MTR_7g034120 32.700 263 147 11 81 323 3 255 2.78e-22 95.5
MS.gene98269.t1 MTR_5g083890 27.548 363 203 12 12 327 2 351 1.00e-21 95.9
MS.gene98269.t1 MTR_5g058100 29.762 336 187 14 16 322 9 324 1.91e-21 94.4
MS.gene98269.t1 MTR_7g056447 37.430 179 99 3 16 184 9 184 1.94e-21 92.8
MS.gene98269.t1 MTR_8g085430 29.851 335 142 12 16 327 11 275 2.28e-21 93.2
MS.gene98269.t1 MTR_3g107940 58.621 87 33 1 241 327 85 168 5.91e-21 92.4
MS.gene98269.t1 MTR_3g107120 29.971 347 188 13 16 323 9 339 9.33e-21 92.4
MS.gene98269.t1 MTR_3g099830 27.679 336 188 10 16 324 12 319 2.13e-20 90.9
MS.gene98269.t1 MTR_5g008920 29.375 320 204 11 18 323 14 325 3.70e-20 90.5
MS.gene98269.t1 MTR_1g085120 29.043 303 177 8 15 290 178 469 5.20e-20 90.9
MS.gene98269.t1 MTR_1g108820 26.765 340 197 10 16 323 8 327 6.23e-20 89.7
MS.gene98269.t1 MTR_7g055943 29.819 332 193 11 16 322 40 356 7.60e-20 90.1
MS.gene98269.t1 MTR_4g098590 28.863 343 193 12 18 323 1 329 8.38e-20 89.4
MS.gene98269.t1 MTR_7g021990 31.672 341 179 14 16 323 48 367 3.24e-19 88.2
MS.gene98269.t1 MTR_7g021950 31.672 341 179 14 16 323 48 367 3.79e-19 88.2
MS.gene98269.t1 MTR_1g108800 29.755 326 162 9 16 323 8 284 4.38e-19 87.0
MS.gene98269.t1 MTR_5g008950 27.160 324 203 10 18 323 1 309 6.26e-19 87.0
MS.gene98269.t1 MTR_3g467400 27.035 344 178 10 16 323 3 309 1.57e-18 85.5
MS.gene98269.t1 MTR_5g061680 29.114 316 175 13 16 315 11 293 2.83e-18 84.3
MS.gene98269.t1 MTR_7g007340 30.247 324 181 10 13 323 10 301 4.87e-18 84.3
MS.gene98269.t1 MTR_6g022500 27.795 331 203 10 16 323 101 418 8.85e-18 84.3
MS.gene98269.t1 MTR_5g012840 28.179 291 159 9 41 323 14 262 1.35e-17 82.4
MS.gene98269.t1 MTR_4g134150 33.475 236 135 7 9 236 10 231 1.71e-17 80.5
MS.gene98269.t1 MTR_1g066830 27.536 345 189 12 16 323 8 328 2.80e-17 82.0
MS.gene98269.t1 MTR_7g033945 32.941 170 98 3 8 164 6 172 3.34e-17 78.6
MS.gene98269.t1 MTR_2g008320 26.744 344 192 11 16 323 52 371 4.37e-17 82.0
MS.gene98269.t1 MTR_2g007400 27.429 350 198 12 16 323 12 347 8.22e-17 80.9
MS.gene98269.t1 MTR_3g095600 33.188 229 122 11 16 232 4 213 1.07e-16 79.3
MS.gene98269.t1 MTR_2g007450 28.610 367 194 14 12 322 12 366 1.28e-16 80.5
MS.gene98269.t1 MTR_3g026920 27.397 365 178 12 16 321 19 355 2.12e-16 79.7
MS.gene98269.t1 MTR_7g075820 25.989 354 208 12 14 327 4 343 1.11e-15 77.4
MS.gene98269.t1 MTR_7g007370 31.348 319 147 15 12 313 13 276 1.19e-15 77.0
MS.gene98269.t1 MTR_6g022360 26.543 324 206 7 16 323 43 350 1.63e-15 77.0
MS.gene98269.t1 MTR_6g013160 28.255 361 169 15 10 290 3 353 2.52e-15 76.6
MS.gene98269.t1 MTR_5g039450 29.052 327 177 12 16 316 6 303 4.00e-15 75.5
MS.gene98269.t1 MTR_5g031970 27.987 318 184 8 16 323 16 298 4.94e-15 75.5
MS.gene98269.t1 MTR_6g044572 27.966 354 173 10 16 320 2 322 5.67e-15 75.5
MS.gene98269.t1 MTR_6g044560 27.945 365 176 12 9 320 168 498 6.94e-15 75.9
MS.gene98269.t1 MTR_5g054920 34.783 161 83 5 174 323 3 152 8.57e-15 72.0
MS.gene98269.t1 MTR_5g073370 27.795 331 204 10 13 320 2 320 1.34e-14 74.3
MS.gene98269.t1 MTR_7g022105 31.014 345 176 17 16 323 49 368 1.85e-14 73.9
MS.gene98269.t1 MTR_5g013500 28.324 346 173 15 9 323 5 306 2.15e-14 73.6
MS.gene98269.t1 MTR_1g108820 25.806 310 183 8 16 293 8 302 4.95e-14 72.4
MS.gene98269.t1 MTR_3g114200 38.255 149 74 6 8 143 10 153 8.02e-14 68.6
MS.gene98269.t1 MTR_8g468910 28.409 176 112 4 11 172 43 218 1.97e-13 70.9
MS.gene98269.t1 MTR_5g073340 28.750 320 183 12 16 317 8 300 2.08e-13 70.1
MS.gene98269.t1 MTR_1g095750 44.444 81 43 1 16 94 46 126 6.20e-12 62.8
MS.gene98269.t1 MTR_2g036470 26.361 349 192 13 16 323 14 338 1.00e-11 65.9
MS.gene98269.t1 MTR_7g017280 26.000 350 189 18 11 312 143 470 1.42e-11 65.5
MS.gene98269.t1 MTR_6g022520 31.401 207 120 5 131 323 57 255 1.71e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98269.t1 AT4G26340 30.328 366 176 18 16 315 2 354 1.07e-15 77.8
MS.gene98269.t1 AT5G53840 34.615 182 107 4 14 187 16 193 4.27e-15 76.3
MS.gene98269.t1 AT5G38590 28.219 365 181 13 16 315 2 350 3.89e-13 70.1
MS.gene98269.t1 AT1G16930 29.444 180 118 3 16 187 15 193 3.93e-13 70.1
MS.gene98269.t1 AT1G16930 29.444 180 118 3 16 187 15 193 3.93e-13 70.1
MS.gene98269.t1 AT1G16930 29.444 180 118 3 16 187 15 193 3.93e-13 70.1
MS.gene98269.t1 AT5G56380 26.471 374 202 12 16 317 2 374 1.90e-12 68.2
MS.gene98269.t1 AT5G56380 26.471 374 202 12 16 317 2 374 1.90e-12 68.2
MS.gene98269.t1 AT5G41840 28.755 233 119 8 16 216 14 231 4.80e-12 67.0
MS.gene98269.t1 AT5G56810 26.984 378 195 12 8 317 7 371 7.91e-12 66.2
MS.gene98269.t1 AT1G51370 29.208 202 134 3 14 210 17 214 1.31e-11 65.1
MS.gene98269.t1 AT1G51370 29.208 202 134 3 14 210 17 214 1.69e-11 65.1
MS.gene98269.t1 AT5G41830 30.542 203 115 7 16 193 13 214 2.02e-11 65.1
MS.gene98269.t1 AT1G51370 29.208 202 134 3 14 210 17 214 2.06e-11 65.1
MS.gene98269.t1 AT5G56820 29.412 357 195 14 16 323 15 363 2.23e-11 64.7
MS.gene98269.t1 AT5G56810 31.100 209 114 10 9 200 8 203 2.26e-11 64.3
MS.gene98269.t1 AT2G42720 33.010 206 115 9 16 201 2 204 2.67e-11 64.7
MS.gene98269.t1 AT1G55660 33.679 193 99 8 16 187 53 237 3.10e-11 64.3
MS.gene98269.t1 AT4G26350 34.392 189 100 7 16 188 2 182 3.59e-11 64.3
MS.gene98269.t1 AT1G55660 33.679 193 99 8 16 187 53 237 3.71e-11 64.3
MS.gene98269.t1 AT4G00315 28.195 266 142 10 16 261 2 238 4.27e-11 63.9
MS.gene98269.t1 AT5G38590 31.163 215 120 7 16 216 2 202 7.84e-11 62.4
MS.gene98269.t1 AT4G14103 32.474 194 110 8 16 192 8 197 8.99e-11 62.8
MS.gene98269.t1 AT4G14103 32.474 194 110 8 16 192 8 197 8.99e-11 62.8

Find 79 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATTGGGGCGCCATTTA+AGG 0.150803 6.2:-55579293 None:intergenic
GGCATAAACAATTTCATTAT+TGG 0.159615 6.2:-55579307 None:intergenic
TTCTATCAGTCCACCTTAAA+TGG 0.202293 6.2:+55579280 MS.gene98269:CDS
TTGGTTAGAGCTAACATTTC+CGG 0.241620 6.2:+55579645 MS.gene98269:CDS
GCATAAACAATTTCATTATT+GGG 0.258044 6.2:-55579306 None:intergenic
AATGTTAGCTCTAACCAATT+TGG 0.273976 6.2:-55579640 None:intergenic
TCTACCTTATCGACAATTCT+TGG 0.290438 6.2:+55579221 MS.gene98269:CDS
TGATAGAAGCTTATCCAAAT+TGG 0.291994 6.2:+55579626 MS.gene98269:CDS
GTTTGACAATTTAACTCATC+TGG 0.315698 6.2:+55580011 MS.gene98269:CDS
TTTGAGGAATGCCAAAGTTT+TGG 0.329010 6.2:-55579418 None:intergenic
AGAAAGGTTGTGACCTGGTT+TGG 0.331643 6.2:+55579601 MS.gene98269:CDS
ATGTGATGAAGAAGTGAGTC+TGG 0.348914 6.2:-55579081 None:intergenic
ATGATAAGAGTTTGAAGCTT+GGG 0.355239 6.2:-55580117 None:intergenic
TTGTCGTCTTCTTCTTCATC+TGG 0.358043 6.2:-55579045 None:intergenic
TTGTTATCCTCTTCAATTTG+AGG 0.369269 6.2:-55579434 None:intergenic
TTCAGCCATTTCCATTTGAA+TGG 0.377955 6.2:-55580075 None:intergenic
AGATGAGATAAAAGGCATTC+TGG 0.388182 6.2:-55580291 None:intergenic
TGTTTCCAACTCCCGTAGAT+TGG 0.390626 6.2:-55579562 None:intergenic
TATCTCACCAAACTTCTATC+TGG 0.395723 6.2:+55579534 MS.gene98269:CDS
GGCCCACTCCCAGCCGTTCA+TGG 0.396676 6.2:-55580053 None:intergenic
GGGAGAGCCAGATAGAAGTT+TGG 0.405961 6.2:-55579541 None:intergenic
CCCGCAATGGCACTACCGTT+AGG 0.407481 6.2:+55579012 None:intergenic
CCTTCTAACCACCAAAACTT+TGG 0.419966 6.2:+55579407 MS.gene98269:CDS
GTTTCCAACTCCCGTAGATT+GGG 0.430747 6.2:-55579561 None:intergenic
ATGTTGTGAGATGAGATAAA+AGG 0.431165 6.2:-55580299 None:intergenic
GAAGATCAACGTTTGAAACT+TGG 0.439390 6.2:-55579461 None:intergenic
CCGCAATGGCACTACCGTTA+GGG 0.440794 6.2:+55579013 None:intergenic
CTACCTTATCGACAATTCTT+GGG 0.451125 6.2:+55579222 MS.gene98269:CDS
AGTGAGAGGGATGGATGGTT+GGG 0.459409 6.2:-55579353 None:intergenic
CTCTCCCAATCTACGGGAGT+TGG 0.467300 6.2:+55579557 MS.gene98269:CDS
TCAGCCATTTCCATTTGAAT+GGG 0.474488 6.2:-55580074 None:intergenic
AACATGAGATGTAGTGGATA+GGG 0.477530 6.2:-55579991 None:intergenic
AAGGATTTAATCGTAAAGAA+AGG 0.480318 6.2:+55579585 MS.gene98269:CDS
TGACCATGAACGGCTGGGAG+TGG 0.480941 6.2:+55580050 MS.gene98269:CDS
TTTAAGGTGGACTGATAGAA+AGG 0.483228 6.2:-55579277 None:intergenic
TATCTGGCTCTCCCAATCTA+CGG 0.483679 6.2:+55579550 MS.gene98269:CDS
GAGTGAGAGGGATGGATGGT+TGG 0.486728 6.2:-55579354 None:intergenic
CTTATCTCGAGTGGCGATGA+AGG 0.488041 6.2:-55579247 None:intergenic
TGGGCCCATTCAAATGGAAA+TGG 0.489685 6.2:+55580070 MS.gene98269:CDS
AGACATTGACCATGAACGGC+TGG 0.494764 6.2:+55580044 MS.gene98269:CDS
GACCATGAACGGCTGGGAGT+GGG 0.515661 6.2:+55580051 MS.gene98269:CDS
ATCTGGCTCTCCCAATCTAC+GGG 0.518456 6.2:+55579551 MS.gene98269:CDS
CATAAACAATTTCATTATTG+GGG 0.521312 6.2:-55579305 None:intergenic
TGGGAGTGGGCCCATTCAAA+TGG 0.523309 6.2:+55580064 MS.gene98269:CDS
AAACATGAGATGTAGTGGAT+AGG 0.534808 6.2:-55579992 None:intergenic
GAGCCCAAGAATTGTCGATA+AGG 0.536813 6.2:-55579225 None:intergenic
ACAATTTCGACGATGGCAGT+TGG 0.540296 6.2:+55580250 MS.gene98269:CDS
CTCGCTCAAAGTACTTCACA+TGG 0.549068 6.2:+55579485 MS.gene98269:CDS
TTGTCAAACATGAGATGTAG+TGG 0.552805 6.2:-55579997 None:intergenic
AATGATAAGAGTTTGAAGCT+TGG 0.554312 6.2:-55580118 None:intergenic
TCAAACTCTTATCATTGATG+AGG 0.554678 6.2:+55580125 MS.gene98269:CDS
CTTAAACATAATATGCCGAC+CGG 0.557808 6.2:-55579664 None:intergenic
CATTAGACATTGACCATGAA+CGG 0.557897 6.2:+55580040 MS.gene98269:CDS
CGTAAAGAAAGGTTGTGACC+TGG 0.561456 6.2:+55579596 MS.gene98269:CDS
TGATAAGAGTTTGAAGCTTG+GGG 0.561683 6.2:-55580116 None:intergenic
TTGATATACATACCACATGT+AGG 0.563352 6.2:-55579713 None:intergenic
TATTGGGGCGCCATTTAAGG+TGG 0.567435 6.2:-55579290 None:intergenic
TTTCGACGATGGCAGTTGGA+AGG 0.568675 6.2:+55580254 MS.gene98269:CDS
TGGCATTCCTCAAATTGAAG+AGG 0.576392 6.2:+55579427 MS.gene98269:CDS
ATCAGAGTGAGAGGGATGGA+TGG 0.583194 6.2:-55579358 None:intergenic
TTAAGGTGGACTGATAGAAA+GGG 0.583435 6.2:-55579276 None:intergenic
ATGTGAAGTACTTTGAGCGA+GGG 0.583803 6.2:-55579483 None:intergenic
AGCTTCTATCATTCCAAACC+AGG 0.587339 6.2:-55579614 None:intergenic
TATGTAGCAATCAGAGTGAG+AGG 0.591435 6.2:-55579367 None:intergenic
TGTGATGAAGAAGTGAGTCT+GGG 0.604113 6.2:-55579080 None:intergenic
GACATTGACCATGAACGGCT+GGG 0.612407 6.2:+55580045 MS.gene98269:CDS
ATAAAGTCGTCGTTGAATAG+CGG 0.615262 6.2:-55579328 None:intergenic
TCTACGGGAGTTGGAAACAA+AGG 0.618747 6.2:+55579566 MS.gene98269:CDS
GGAGCATCTGCGCCTACATG+TGG 0.622134 6.2:+55579701 MS.gene98269:CDS
CATGTGAAGTACTTTGAGCG+AGG 0.624165 6.2:-55579484 None:intergenic
GGGTAGATTCTTATCTCGAG+TGG 0.627196 6.2:-55579256 None:intergenic
TTTCTTTCTATCAAAGACGC+AGG 0.631624 6.2:+55579111 MS.gene98269:CDS
ATTGAATCTCACAGTTTATG+CGG 0.632689 6.2:-55580341 None:intergenic
TCTGGAATTGAAAACCCTAA+CGG 0.639431 6.2:-55579027 None:intergenic
GTTTAAGCAACTTTATAACG+TGG 0.643974 6.2:+55579680 MS.gene98269:CDS
ACAGTAAACAATTTCGACGA+TGG 0.660443 6.2:+55580243 MS.gene98269:CDS
ATGTAGCAATCAGAGTGAGA+GGG 0.662701 6.2:-55579366 None:intergenic
AGCAATCAGAGTGAGAGGGA+TGG 0.678515 6.2:-55579362 None:intergenic
TTAGAGCTAACATTTCCGGT+CGG 0.704519 6.2:+55579649 MS.gene98269:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAATACATAGAAG+TGG - chr6.2:55580181-55580200 None:intergenic 15.0%
!! CATAAACAATTTCATTATTG+GGG - chr6.2:55579308-55579327 None:intergenic 20.0%
!! GCATAAACAATTTCATTATT+GGG - chr6.2:55579309-55579328 None:intergenic 20.0%
!!! GACTCAATTCATAATTTTTT+TGG - chr6.2:55579860-55579879 None:intergenic 20.0%
! AAAAATACATAGAAGTGGAA+TGG - chr6.2:55580176-55580195 None:intergenic 25.0%
! AAGGATTTAATCGTAAAGAA+AGG + chr6.2:55579585-55579604 MS.gene98269:CDS 25.0%
! AGTCACATTGTTCAATTTAA+GGG + chr6.2:55579876-55579895 MS.gene98269:intron 25.0%
! GGCATAAACAATTTCATTAT+TGG - chr6.2:55579310-55579329 None:intergenic 25.0%
! TAATCAATTTACTCATTCCA+TGG + chr6.2:55579791-55579810 MS.gene98269:intron 25.0%
! TTTATTACAAGTATACTCCA+TGG - chr6.2:55579811-55579830 None:intergenic 25.0%
ATGTTGTGAGATGAGATAAA+AGG - chr6.2:55580302-55580321 None:intergenic 30.0%
GAGTCACATTGTTCAATTTA+AGG + chr6.2:55579875-55579894 MS.gene98269:intron 30.0%
GTTTAAGCAACTTTATAACG+TGG + chr6.2:55579680-55579699 MS.gene98269:CDS 30.0%
GTTTGACAATTTAACTCATC+TGG + chr6.2:55580011-55580030 MS.gene98269:CDS 30.0%
TCAAACTCTTATCATTGATG+AGG + chr6.2:55580125-55580144 MS.gene98269:CDS 30.0%
TGATAGAAGCTTATCCAAAT+TGG + chr6.2:55579626-55579645 MS.gene98269:CDS 30.0%
TTCAATTGTGTATCATTGTC+AGG + chr6.2:55580215-55580234 MS.gene98269:intron 30.0%
TTGATATACATACCACATGT+AGG - chr6.2:55579716-55579735 None:intergenic 30.0%
TTGTTATCCTCTTCAATTTG+AGG - chr6.2:55579437-55579456 None:intergenic 30.0%
! AATGATAAGAGTTTGAAGCT+TGG - chr6.2:55580121-55580140 None:intergenic 30.0%
! ATGATAAGAGTTTGAAGCTT+GGG - chr6.2:55580120-55580139 None:intergenic 30.0%
!! AATGTTAGCTCTAACCAATT+TGG - chr6.2:55579643-55579662 None:intergenic 30.0%
ACAGTAAACAATTTCGACGA+TGG + chr6.2:55580243-55580262 MS.gene98269:CDS 35.0%
ATAAAGTCGTCGTTGAATAG+CGG - chr6.2:55579331-55579350 None:intergenic 35.0%
CATTAGACATTGACCATGAA+CGG + chr6.2:55580040-55580059 MS.gene98269:CDS 35.0%
CTACCTTATCGACAATTCTT+GGG + chr6.2:55579222-55579241 MS.gene98269:CDS 35.0%
CTTAAACATAATATGCCGAC+CGG - chr6.2:55579667-55579686 None:intergenic 35.0%
TATCTCACCAAACTTCTATC+TGG + chr6.2:55579534-55579553 MS.gene98269:CDS 35.0%
TCAGCCATTTCCATTTGAAT+GGG - chr6.2:55580077-55580096 None:intergenic 35.0%
TCTACCTTATCGACAATTCT+TGG + chr6.2:55579221-55579240 MS.gene98269:CDS 35.0%
TTCAGCCATTTCCATTTGAA+TGG - chr6.2:55580078-55580097 None:intergenic 35.0%
TTCTATCAGTCCACCTTAAA+TGG + chr6.2:55579280-55579299 MS.gene98269:CDS 35.0%
TTGGTTAGAGCTAACATTTC+CGG + chr6.2:55579645-55579664 MS.gene98269:CDS 35.0%
TTGTCAAACATGAGATGTAG+TGG - chr6.2:55580000-55580019 None:intergenic 35.0%
TTTCTTTCTATCAAAGACGC+AGG + chr6.2:55579111-55579130 MS.gene98269:CDS 35.0%
! GAAGATCAACGTTTGAAACT+TGG - chr6.2:55579464-55579483 None:intergenic 35.0%
! TCTGGAATTGAAAACCCTAA+CGG - chr6.2:55579030-55579049 None:intergenic 35.0%
! TGATAAGAGTTTGAAGCTTG+GGG - chr6.2:55580119-55580138 None:intergenic 35.0%
! TTTGAGGAATGCCAAAGTTT+TGG - chr6.2:55579421-55579440 None:intergenic 35.0%
!! AAACATGAGATGTAGTGGAT+AGG - chr6.2:55579995-55580014 None:intergenic 35.0%
!! AACATGAGATGTAGTGGATA+GGG - chr6.2:55579994-55580013 None:intergenic 35.0%
!! AGATGAGATAAAAGGCATTC+TGG - chr6.2:55580294-55580313 None:intergenic 35.0%
!! GAATCTATCACTTTTGCAGA+TGG + chr6.2:55579507-55579526 MS.gene98269:CDS 35.0%
!! TCTGTTTCCATCTTTTTGAG+AGG - chr6.2:55579149-55579168 None:intergenic 35.0%
!! TTAAGGTGGACTGATAGAAA+GGG - chr6.2:55579279-55579298 None:intergenic 35.0%
!! TTTAAGGTGGACTGATAGAA+AGG - chr6.2:55579280-55579299 None:intergenic 35.0%
!!! GCTATTTCTCTCGATTTTCA+AGG + chr6.2:55579907-55579926 MS.gene98269:intron 35.0%
AGCTTCTATCATTCCAAACC+AGG - chr6.2:55579617-55579636 None:intergenic 40.0%
ATGTAGCAATCAGAGTGAGA+GGG - chr6.2:55579369-55579388 None:intergenic 40.0%
ATGTGATGAAGAAGTGAGTC+TGG - chr6.2:55579084-55579103 None:intergenic 40.0%
CCTTCTAACCACCAAAACTT+TGG + chr6.2:55579407-55579426 MS.gene98269:CDS 40.0%
TATGTAGCAATCAGAGTGAG+AGG - chr6.2:55579370-55579389 None:intergenic 40.0%
TGGCATTCCTCAAATTGAAG+AGG + chr6.2:55579427-55579446 MS.gene98269:CDS 40.0%
TGTGATGAAGAAGTGAGTCT+GGG - chr6.2:55579083-55579102 None:intergenic 40.0%
TTAGAGCTAACATTTCCGGT+CGG + chr6.2:55579649-55579668 MS.gene98269:CDS 40.0%
TTGTCGTCTTCTTCTTCATC+TGG - chr6.2:55579048-55579067 None:intergenic 40.0%
! ATGTGAAGTACTTTGAGCGA+GGG - chr6.2:55579486-55579505 None:intergenic 40.0%
!! CCAAAGTTTTGGTGGTTAGA+AGG - chr6.2:55579410-55579429 None:intergenic 40.0%
!! GTTTCCATCTTTTTGAGAGG+AGG - chr6.2:55579146-55579165 None:intergenic 40.0%
ACAATTTCGACGATGGCAGT+TGG + chr6.2:55580250-55580269 MS.gene98269:CDS 45.0%
AGAAAGGTTGTGACCTGGTT+TGG + chr6.2:55579601-55579620 MS.gene98269:CDS 45.0%
CATGCCTCCTCTCAAAAAGA+TGG + chr6.2:55579139-55579158 MS.gene98269:CDS 45.0%
CGTAAAGAAAGGTTGTGACC+TGG + chr6.2:55579596-55579615 MS.gene98269:CDS 45.0%
GAGCCCAAGAATTGTCGATA+AGG - chr6.2:55579228-55579247 None:intergenic 45.0%
GGGTAGATTCTTATCTCGAG+TGG - chr6.2:55579259-55579278 None:intergenic 45.0%
GTTTCCAACTCCCGTAGATT+GGG - chr6.2:55579564-55579583 None:intergenic 45.0%
TCTACGGGAGTTGGAAACAA+AGG + chr6.2:55579566-55579585 MS.gene98269:CDS 45.0%
TGGGCCCATTCAAATGGAAA+TGG + chr6.2:55580070-55580089 MS.gene98269:CDS 45.0%
TGTTTCCAACTCCCGTAGAT+TGG - chr6.2:55579565-55579584 None:intergenic 45.0%
! CATGTGAAGTACTTTGAGCG+AGG - chr6.2:55579487-55579506 None:intergenic 45.0%
! CATTATTGGGGCGCCATTTA+AGG - chr6.2:55579296-55579315 None:intergenic 45.0%
! CTCGCTCAAAGTACTTCACA+TGG + chr6.2:55579485-55579504 MS.gene98269:CDS 45.0%
!! GAGGAATGCCAAAGTTTTGG+TGG - chr6.2:55579418-55579437 None:intergenic 45.0%
!! TATCTGGCTCTCCCAATCTA+CGG + chr6.2:55579550-55579569 MS.gene98269:CDS 45.0%
AGACATTGACCATGAACGGC+TGG + chr6.2:55580044-55580063 MS.gene98269:CDS 50.0%
AGCAATCAGAGTGAGAGGGA+TGG - chr6.2:55579365-55579384 None:intergenic 50.0%
AGTGAGAGGGATGGATGGTT+GGG - chr6.2:55579356-55579375 None:intergenic 50.0%
ATCAGAGTGAGAGGGATGGA+TGG - chr6.2:55579361-55579380 None:intergenic 50.0%
CTTATCTCGAGTGGCGATGA+AGG - chr6.2:55579250-55579269 None:intergenic 50.0%
GACATTGACCATGAACGGCT+GGG + chr6.2:55580045-55580064 MS.gene98269:CDS 50.0%
GGGAGAGCCAGATAGAAGTT+TGG - chr6.2:55579544-55579563 None:intergenic 50.0%
TTTCGACGATGGCAGTTGGA+AGG + chr6.2:55580254-55580273 MS.gene98269:CDS 50.0%
! TATTGGGGCGCCATTTAAGG+TGG - chr6.2:55579293-55579312 None:intergenic 50.0%
!! ATCTGGCTCTCCCAATCTAC+GGG + chr6.2:55579551-55579570 MS.gene98269:CDS 50.0%
CTCTCCCAATCTACGGGAGT+TGG + chr6.2:55579557-55579576 MS.gene98269:CDS 55.0%
GAGTGAGAGGGATGGATGGT+TGG - chr6.2:55579357-55579376 None:intergenic 55.0%
TGGGAGTGGGCCCATTCAAA+TGG + chr6.2:55580064-55580083 MS.gene98269:CDS 55.0%
GACCATGAACGGCTGGGAGT+GGG + chr6.2:55580051-55580070 MS.gene98269:CDS 60.0%
TGACCATGAACGGCTGGGAG+TGG + chr6.2:55580050-55580069 MS.gene98269:CDS 60.0%
! GGAGCATCTGCGCCTACATG+TGG + chr6.2:55579701-55579720 MS.gene98269:CDS 60.0%
GGCCCACTCCCAGCCGTTCA+TGG - chr6.2:55580056-55580075 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 55579018 55580351 55579018 ID=MS.gene98269
chr6.2 mRNA 55579018 55580351 55579018 ID=MS.gene98269.t1;Parent=MS.gene98269
chr6.2 exon 55579018 55579722 55579018 ID=MS.gene98269.t1.exon1;Parent=MS.gene98269.t1
chr6.2 CDS 55579018 55579722 55579018 ID=cds.MS.gene98269.t1;Parent=MS.gene98269.t1
chr6.2 exon 55579985 55580146 55579985 ID=MS.gene98269.t1.exon2;Parent=MS.gene98269.t1
chr6.2 CDS 55579985 55580146 55579985 ID=cds.MS.gene98269.t1;Parent=MS.gene98269.t1
chr6.2 exon 55580237 55580351 55580237 ID=MS.gene98269.t1.exon3;Parent=MS.gene98269.t1
chr6.2 CDS 55580237 55580351 55580237 ID=cds.MS.gene98269.t1;Parent=MS.gene98269.t1
Gene Sequence

>MS.gene98269

ATGGCACTACCGTTAGGGTTTTCAATTCCAGATGAAGAAGAAGACGACAAAATAAGCGATCTCCCAGACTCACTTCTTCATCACATTCTTTCTTTTCTTTCTATCAAAGACGCAGGCATCACATGCCTCCTCTCAAAAAGATGGAAACAGATTTCGCTGTTACAACTCATCGTCTACTTCGATGAAAAACACTGTCGAGAAGCTCTACCTTATCGACAATTCTTGGGCTCCTTCATCGCCACTCGAGATAAGAATCTACCCTTTCTATCAGTCCACCTTAAATGGCGCCCCAATAATGAAATTGTTTATGCCGCTATTCAACGACGACTTTATAACCCAACCATCCATCCCTCTCACTCTGATTGCTACATAATCAAATCGTCTTCTTTCCTTCTAACCACCAAAACTTTGGCATTCCTCAAATTGAAGAGGATAACAATCAACCAAGTTTCAAACGTTGATCTTCCCTCGCTCAAAGTACTTCACATGGAATCTATCACTTTTGCAGATGGTGAATATCTCACCAAACTTCTATCTGGCTCTCCCAATCTACGGGAGTTGGAAACAAAGGATTTAATCGTAAAGAAAGGTTGTGACCTGGTTTGGAATGATAGAAGCTTATCCAAATTGGTTAGAGCTAACATTTCCGGTCGGCATATTATGTTTAAGCAACTTTATAACGTGGAGCATCTGCGCCTACATGTGGTATGTATATCAATATATTTATCTGCTTATATCAATATATTTATCTGCATTAATCTCTTAAATTAAGATAATCAATTTACTCATTCCATGGAGTATACTTGTAATAAACATTTATCAAAATCAATGTATATTGACCAAAAAAATTATGAATTGAGTCACATTGTTCAATTTAAGGGAGTAAATTGCTATTTCTCTCGATTTTCAAGGATGAAAATTTTGATTTACTCAACTCATTAATATTATGTCTTTACAACTAATGCAGACATGTCCCTATCCACTACATCTCATGTTTGACAATTTAACTCATCTGGAGCTTACATTAGACATTGACCATGAACGGCTGGGAGTGGGCCCATTCAAATGGAAATGGCTGAATATTCTGCTTTCATATTTCCCCAAGCTTCAAACTCTTATCATTGATGAGGTTTTTAATGTCATGTCTTTTCTTTTCCATTCCACTTCTATGTATTTTTTTTATATATTTCAAAACATTTCAATTGTGTATCATTGTCAGGTTGATACAGTAAACAATTTCGACGATGGCAGTTGGAAGGAAACAGTTGTTGTACCAGAATGCCTTTTATCTCATCTCACAACATGCTCACTTAGAAATTACTGCCGCATAAACT
Protein sequence

>MS.gene98269.t1

MALPLGFSIPDEEEDDKISDLPDSLLHHILSFLSIKDAGITCLLSKRWKQISLLQLIVYFDEKHCREALPYRQFLGSFIATRDKNLPFLSVHLKWRPNNEIVYAAIQRRLYNPTIHPSHSDCYIIKSSSFLLTTKTLAFLKLKRITINQVSNVDLPSLKVLHMESITFADGEYLTKLLSGSPNLRELETKDLIVKKGCDLVWNDRSLSKLVRANISGRHIMFKQLYNVEHLRLHVTCPYPLHLMFDNLTHLELTLDIDHERLGVGPFKWKWLNILLSYFPKLQTLIIDEVDTVNNFDDGSWKETVVVPECLLSHLTTCSLRNYCRIN