AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85640.t1 MTR_7g056020 91.667 264 22 0 1 264 57 320 9.03e-177 502
MS.gene85640.t1 MTR_3g108560 50.385 260 111 6 16 264 83 335 6.43e-65 208
MS.gene85640.t1 MTR_0492s0020 49.425 261 109 6 15 264 148 396 8.12e-62 201
MS.gene85640.t1 MTR_0543s0010 49.425 261 109 6 15 264 148 396 1.98e-61 201
MS.gene85640.t1 MTR_3g109982 55.665 203 83 3 66 264 222 421 7.13e-56 192
MS.gene85640.t1 MTR_3g109982 44.030 134 66 3 15 141 75 206 5.22e-20 90.1
MS.gene85640.t1 MTR_3g087260 51.707 205 89 4 66 264 203 403 1.65e-50 172
MS.gene85640.t1 MTR_3g087260 42.857 119 65 2 15 131 64 181 4.06e-17 80.9
MS.gene85640.t1 MTR_4g080610 43.321 277 113 5 4 264 56 304 1.95e-50 169
MS.gene85640.t1 MTR_3g108560 47.085 223 100 6 16 227 83 298 3.91e-44 152
MS.gene85640.t1 MTR_3g108150 40.972 288 140 9 4 266 57 339 1.09e-42 150
MS.gene85640.t1 MTR_7g088260 42.205 263 123 8 16 260 154 405 6.91e-42 149
MS.gene85640.t1 MTR_3g110010 53.333 165 70 3 66 226 222 383 1.50e-37 140
MS.gene85640.t1 MTR_3g110010 44.030 134 66 3 15 141 75 206 3.83e-20 90.5
MS.gene85640.t1 MTR_7g098570 34.686 271 154 8 3 260 75 335 1.41e-28 114
MS.gene85640.t1 MTR_7g098510 33.621 232 142 5 36 260 107 333 1.61e-27 109
MS.gene85640.t1 MTR_1g041245 35.021 237 133 9 36 260 102 329 5.24e-24 100
MS.gene85640.t1 MTR_7g098480 32.946 258 153 7 16 260 81 331 3.79e-23 98.6
MS.gene85640.t1 MTR_7g032380 30.870 230 127 6 37 264 104 303 1.64e-22 95.5
MS.gene85640.t1 MTR_3g107940 59.770 87 32 1 178 264 85 168 1.65e-22 95.5
MS.gene85640.t1 MTR_7g115270 30.519 308 164 10 2 266 54 354 4.29e-22 95.1
MS.gene85640.t1 MTR_7g032370 32.618 233 137 7 37 264 82 299 7.60e-22 93.6
MS.gene85640.t1 MTR_3g036250 33.585 265 136 12 16 260 68 312 8.84e-21 90.9
MS.gene85640.t1 MTR_7g034115 34.343 198 117 6 70 260 135 326 1.25e-19 87.8
MS.gene85640.t1 MTR_3g040700 31.818 264 141 11 16 260 106 349 1.74e-19 87.8
MS.gene85640.t1 MTR_7g026500 33.333 213 119 7 60 260 138 339 2.03e-18 84.7
MS.gene85640.t1 MTR_7g034120 30.651 261 151 10 18 258 3 253 7.37e-18 82.0
MS.gene85640.t1 MTR_5g007410 34.300 207 109 6 72 260 153 350 7.80e-18 83.2
MS.gene85640.t1 MTR_5g045170 32.922 243 129 7 36 260 107 333 1.26e-17 82.4
MS.gene85640.t1 MTR_7g060470 30.357 224 120 8 63 260 124 337 1.37e-17 82.0
MS.gene85640.t1 MTR_7g007080 33.659 205 112 6 69 260 134 327 3.47e-17 80.9
MS.gene85640.t1 MTR_3g071850 31.984 247 129 8 36 260 122 351 3.80e-17 81.6
MS.gene85640.t1 MTR_3g023630 31.780 236 134 7 36 260 101 320 9.06e-17 79.7
MS.gene85640.t1 MTR_5g054920 35.404 161 82 5 111 260 3 152 1.43e-16 76.3
MS.gene85640.t1 MTR_7g033990 30.000 270 159 8 18 266 76 336 2.08e-16 79.0
MS.gene85640.t1 MTR_6g045333 32.524 206 114 6 72 260 191 388 2.21e-16 79.0
MS.gene85640.t1 MTR_7g033915 35.366 164 90 6 111 266 163 318 3.62e-16 77.8
MS.gene85640.t1 MTR_7g056433 30.800 250 143 8 36 266 103 341 1.37e-15 76.3
MS.gene85640.t1 MTR_5g083890 30.493 223 123 8 69 273 152 360 1.46e-15 76.6
MS.gene85640.t1 MTR_6g040270 29.952 207 112 8 69 260 132 320 2.83e-15 75.5
MS.gene85640.t1 MTR_0009s0080 32.039 206 114 7 72 260 146 342 8.13e-15 74.3
MS.gene85640.t1 MTR_5g073420 32.314 229 128 11 39 260 111 319 1.66e-14 73.2
MS.gene85640.t1 MTR_3g107100 31.863 204 118 6 69 260 137 331 1.79e-14 73.2
MS.gene85640.t1 MTR_3g099830 29.864 221 124 7 64 265 115 323 1.80e-14 72.8
MS.gene85640.t1 MTR_3g082890 29.861 288 156 10 18 266 159 439 2.59e-14 72.8
MS.gene85640.t1 MTR_3g107120 31.658 199 123 5 69 260 147 339 7.40e-14 71.2
MS.gene85640.t1 MTR_5g045510 30.348 201 105 4 72 260 137 314 8.54e-14 70.9
MS.gene85640.t1 MTR_3g105060 31.000 200 112 7 69 260 138 319 1.18e-13 70.5
MS.gene85640.t1 MTR_7g021990 35.096 208 110 7 69 260 169 367 2.02e-13 70.1
MS.gene85640.t1 MTR_7g021950 35.096 208 110 7 69 260 169 367 2.67e-13 69.7
MS.gene85640.t1 MTR_4g039440 28.986 207 123 6 69 260 154 351 2.69e-13 69.7
MS.gene85640.t1 MTR_5g058000 35.533 197 107 8 71 260 133 316 3.67e-13 68.9
MS.gene85640.t1 MTR_2g008320 30.806 211 118 8 69 264 178 375 4.26e-13 69.3
MS.gene85640.t1 MTR_3g107160 29.435 248 136 11 30 260 106 331 7.44e-13 68.2
MS.gene85640.t1 MTR_6g022500 31.156 199 120 6 71 260 228 418 1.23e-12 67.8
MS.gene85640.t1 MTR_5g008950 27.442 215 124 8 70 266 119 319 1.46e-12 67.4
MS.gene85640.t1 MTR_2g008310 31.553 206 114 7 69 260 124 316 2.04e-12 67.0
MS.gene85640.t1 MTR_1g108800 29.310 232 133 6 45 260 68 284 2.54e-12 66.6
MS.gene85640.t1 MTR_1089s0010 28.856 201 120 7 69 260 132 318 5.08e-12 65.9
MS.gene85640.t1 MTR_2g007500 28.846 260 148 8 26 260 83 330 5.48e-12 65.5
MS.gene85640.t1 MTR_7g075820 25.475 263 163 9 21 273 113 352 1.70e-11 64.3
MS.gene85640.t1 MTR_1g085120 29.064 203 123 6 71 260 219 413 1.73e-11 64.3
MS.gene85640.t1 MTR_7g056287 26.697 221 129 8 53 260 114 314 2.21e-11 63.9
MS.gene85640.t1 MTR_1g085120 29.064 203 123 6 71 260 294 488 2.78e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 66 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTTGGGGCACCATTTA+AGG 0.155891 3.3:-88455413 None:intergenic
TCCTGTCAGTTCACCTTAAA+TGG 0.205871 3.3:+88455400 MS.gene85640:CDS
TTGGTTAGAGCTAACATTTC+CGG 0.251204 3.3:+88455765 MS.gene85640:CDS
GAAAGAAGACGATTTGATTA+TGG 0.300322 3.3:-88455505 None:intergenic
TTTGAGGAATGACAAAGTTT+TGG 0.340722 3.3:-88455538 None:intergenic
GTTTCCAACTCCTGTAGATT+AGG 0.344495 3.3:-88455681 None:intergenic
AGGAGAGCCAGATAGAAGTT+TGG 0.370175 3.3:-88455661 None:intergenic
ATGATAAGAGTTTGAAGCTT+GGG 0.371251 3.3:-88456183 None:intergenic
AGAAAGGTTGTAGCCTGGTT+TGG 0.371341 3.3:+88455721 MS.gene85640:CDS
TTGTTATCATCTTCAATTTG+AGG 0.371938 3.3:-88455554 None:intergenic
TGACCATGAACGGCTGGGAC+TGG 0.382509 3.3:+88456116 MS.gene85640:CDS
TGCCCAGTCCCAGCCGTTCA+TGG 0.386281 3.3:-88456119 None:intergenic
TATCTCACCAAACTTCTATC+TGG 0.395723 3.3:+88455654 MS.gene85640:CDS
CAATGTTTGTGACAAGCTTA+AGG 0.403351 3.3:-88456629 None:intergenic
GTTTGACAATCTAACTCATC+TGG 0.419005 3.3:+88456077 MS.gene85640:CDS
GTTGGAAACAAAGGATTTAG+TGG 0.424824 3.3:+88455695 MS.gene85640:CDS
CTTATCTCGAGCGGCGATGA+AGG 0.426557 3.3:-88455367 None:intergenic
ATGTTGTGAGATGAGATAAA+AGG 0.431165 3.3:-88456380 None:intergenic
GAAGATCAACGTTTGAAACT+TGG 0.433414 3.3:-88455581 None:intergenic
AGTGAGAGGGATGGATGGTT+GGG 0.459409 3.3:-88455473 None:intergenic
CTCTCCTAATCTACAGGAGT+TGG 0.460236 3.3:+88455677 MS.gene85640:CDS
GTTACAACACATGTTCTACT+TGG 0.467444 3.3:+88455317 None:intergenic
ATCTGGCTCTCCTAATCTAC+AGG 0.469916 3.3:+88455671 MS.gene85640:CDS
AACATGAGATGTAGTGGATA+GGG 0.477530 3.3:-88456057 None:intergenic
AAGGATTTAGTGGTAAAGAA+AGG 0.482819 3.3:+88455705 MS.gene85640:CDS
GAGTGAGAGGGATGGATGGT+TGG 0.486728 3.3:-88455474 None:intergenic
AGACATTGACCATGAACGGC+TGG 0.491113 3.3:+88456110 MS.gene85640:CDS
GACCATGAACGGCTGGGACT+GGG 0.492790 3.3:+88456117 MS.gene85640:CDS
ACAATTTCGACGATGGCGGT+TGG 0.495888 3.3:+88456331 MS.gene85640:CDS
TTTCGACGATGGCGGTTGGA+AGG 0.511100 3.3:+88456335 MS.gene85640:CDS
TGATACAAACTTATCCAAGT+TGG 0.519438 3.3:+88455746 MS.gene85640:CDS
TGGGACTGGGCACATTCAAA+TGG 0.534280 3.3:+88456130 MS.gene85640:CDS
AAACATGAGATGTAGTGGAT+AGG 0.534808 3.3:-88456058 None:intergenic
ACCATTTAAGGTGAACTGAC+AGG 0.539597 3.3:-88455401 None:intergenic
TTATCTCGAGCGGCGATGAA+GGG 0.541006 3.3:-88455366 None:intergenic
AATGTTAGCTCTAACCAACT+TGG 0.545027 3.3:-88455760 None:intergenic
GGTAAAGAAAGGTTGTAGCC+TGG 0.546340 3.3:+88455716 MS.gene85640:CDS
CTCGCTCAAAGTACTTCACA+TGG 0.549068 3.3:+88455605 MS.gene85640:CDS
AATGATAAGAGTTTGAAGCT+TGG 0.554312 3.3:-88456184 None:intergenic
CTTAAACATAATATGCCGAC+CGG 0.557808 3.3:-88455784 None:intergenic
CATTAGACATTGACCATGAA+CGG 0.557897 3.3:+88456106 MS.gene85640:CDS
TGATAAGAGTTTGAAGCTTG+GGG 0.562294 3.3:-88456182 None:intergenic
TTGATATACATACCACATGT+AGG 0.563352 3.3:-88455833 None:intergenic
TTGTCAAACATGAGATGTAG+TGG 0.563801 3.3:-88456063 None:intergenic
TCAAACTCTTATCATTCATG+AGG 0.568075 3.3:+88456191 MS.gene85640:CDS
GAAGCTTGGGGAAATGTGAA+AGG 0.578728 3.3:-88456170 None:intergenic
ATCAGAGTGAGAGGGATGGA+TGG 0.583194 3.3:-88455478 None:intergenic
ATGTGAAGTACTTTGAGCGA+GGG 0.583803 3.3:-88455603 None:intergenic
TCTACAGGAGTTGGAAACAA+AGG 0.584438 3.3:+88455686 MS.gene85640:CDS
GACATTGACCATGAACGGCT+GGG 0.596928 3.3:+88456111 MS.gene85640:CDS
TATGGAGCAATCAGAGTGAG+AGG 0.597581 3.3:-88455487 None:intergenic
AGTTTGTATCATTCCAAACC+AGG 0.601004 3.3:-88455734 None:intergenic
TTTAAGGTGAACTGACAGGA+AGG 0.602674 3.3:-88455397 None:intergenic
TGGGCACATTCAAATGGAGA+TGG 0.602845 3.3:+88456136 MS.gene85640:CDS
GTAAACAATTTCGACGATGG+CGG 0.608830 3.3:+88456327 MS.gene85640:CDS
ATAAAGTCGTCGTTGAATAG+CGG 0.615262 3.3:-88455448 None:intergenic
AGATGAGATAAAAGGCATGC+TGG 0.617695 3.3:-88456372 None:intergenic
ATGGAGCAATCAGAGTGAGA+GGG 0.622967 3.3:-88455486 None:intergenic
CATGTGAAGTACTTTGAGCG+AGG 0.624165 3.3:-88455604 None:intergenic
ATTGAATCTCACAGTTTATG+CGG 0.632689 3.3:-88456422 None:intergenic
CGAGCATCTGCGCCTACATG+TGG 0.633926 3.3:+88455821 MS.gene85640:CDS
AGCAATCAGAGTGAGAGGGA+TGG 0.634531 3.3:-88455482 None:intergenic
GGGTAGATTCTTATCTCGAG+CGG 0.667001 3.3:-88455376 None:intergenic
ACAGTAAACAATTTCGACGA+TGG 0.667484 3.3:+88456324 MS.gene85640:CDS
TTAAGGTGAACTGACAGGAA+GGG 0.677390 3.3:-88455396 None:intergenic
TTAGAGCTAACATTTCCGGT+CGG 0.704519 3.3:+88455769 MS.gene85640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTTGAATGATAA+TGG + chr3.3:88456584-88456603 MS.gene85640:intron 10.0%
!! ATAAAAAAAATACATAGAAG+TGG - chr3.3:88456262-88456281 None:intergenic 15.0%
!! AATAAATAAAAGTTGACATG+TGG - chr3.3:88456574-88456593 None:intergenic 20.0%
!!! CATAAACAATTTTATTCTTG+GGG - chr3.3:88455428-88455447 None:intergenic 20.0%
!!! GCATAAACAATTTTATTCTT+GGG - chr3.3:88455429-88455448 None:intergenic 20.0%
!!! TTTATTTGAATGATAATGGA+TGG + chr3.3:88456588-88456607 MS.gene85640:intron 20.0%
! AAAAATACATAGAAGTGGAA+TGG - chr3.3:88456257-88456276 None:intergenic 25.0%
! AGTCACATTGTTCAATTTAA+GGG + chr3.3:88455942-88455961 MS.gene85640:intron 25.0%
! TTGTTATCATCTTCAATTTG+AGG - chr3.3:88455557-88455576 None:intergenic 25.0%
!! GGCATAAACAATTTTATTCT+TGG - chr3.3:88455430-88455449 None:intergenic 25.0%
!! TGTATTTGTATCTACTGATT+CGG - chr3.3:88456505-88456524 None:intergenic 25.0%
AAGGATTTAGTGGTAAAGAA+AGG + chr3.3:88455705-88455724 MS.gene85640:CDS 30.0%
ATGTTGTGAGATGAGATAAA+AGG - chr3.3:88456383-88456402 None:intergenic 30.0%
ATTGAATCTCACAGTTTATG+CGG - chr3.3:88456425-88456444 None:intergenic 30.0%
GAAAGAAGACGATTTGATTA+TGG - chr3.3:88455508-88455527 None:intergenic 30.0%
GAGTCACATTGTTCAATTTA+AGG + chr3.3:88455941-88455960 MS.gene85640:intron 30.0%
TCAAACTCTTATCATTCATG+AGG + chr3.3:88456191-88456210 MS.gene85640:CDS 30.0%
TGATACAAACTTATCCAAGT+TGG + chr3.3:88455746-88455765 MS.gene85640:CDS 30.0%
TTGATATACATACCACATGT+AGG - chr3.3:88455836-88455855 None:intergenic 30.0%
! AATGATAAGAGTTTGAAGCT+TGG - chr3.3:88456187-88456206 None:intergenic 30.0%
! ATGATAAGAGTTTGAAGCTT+GGG - chr3.3:88456186-88456205 None:intergenic 30.0%
! GACTCAATTCGTAATTTTTC+TGG - chr3.3:88455926-88455945 None:intergenic 30.0%
! TTTGAGGAATGACAAAGTTT+TGG - chr3.3:88455541-88455560 None:intergenic 30.0%
!! ACAAAGTTTTGGTAGTTAGA+GGG - chr3.3:88455530-88455549 None:intergenic 30.0%
!!! GCTATTTCTCTCAATTTTCA+AGG + chr3.3:88455973-88455992 MS.gene85640:intron 30.0%
ACAGTAAACAATTTCGACGA+TGG + chr3.3:88456324-88456343 MS.gene85640:CDS 35.0%
AGTTTGTATCATTCCAAACC+AGG - chr3.3:88455737-88455756 None:intergenic 35.0%
ATAAAGTCGTCGTTGAATAG+CGG - chr3.3:88455451-88455470 None:intergenic 35.0%
CAATGTTTGTGACAAGCTTA+AGG - chr3.3:88456632-88456651 None:intergenic 35.0%
CATTAGACATTGACCATGAA+CGG + chr3.3:88456106-88456125 MS.gene85640:CDS 35.0%
CTTAAACATAATATGCCGAC+CGG - chr3.3:88455787-88455806 None:intergenic 35.0%
GAGATAATTCCTTGATCGTT+TGG - chr3.3:88456533-88456552 None:intergenic 35.0%
GTTGGAAACAAAGGATTTAG+TGG + chr3.3:88455695-88455714 MS.gene85640:CDS 35.0%
GTTTGACAATCTAACTCATC+TGG + chr3.3:88456077-88456096 MS.gene85640:CDS 35.0%
TACAAAACTCCAAACGATCA+AGG + chr3.3:88456521-88456540 MS.gene85640:intron 35.0%
TACATAGAAGTGGAATGGAA+TGG - chr3.3:88456252-88456271 None:intergenic 35.0%
TATCTCACCAAACTTCTATC+TGG + chr3.3:88455654-88455673 MS.gene85640:CDS 35.0%
TTCAACTGTGTATCATTGTC+AGG + chr3.3:88456296-88456315 MS.gene85640:intron 35.0%
TTGGTTAGAGCTAACATTTC+CGG + chr3.3:88455765-88455784 MS.gene85640:CDS 35.0%
TTGTCAAACATGAGATGTAG+TGG - chr3.3:88456066-88456085 None:intergenic 35.0%
! GAAGATCAACGTTTGAAACT+TGG - chr3.3:88455584-88455603 None:intergenic 35.0%
! TGATAAGAGTTTGAAGCTTG+GGG - chr3.3:88456185-88456204 None:intergenic 35.0%
!! AAACATGAGATGTAGTGGAT+AGG - chr3.3:88456061-88456080 None:intergenic 35.0%
!! AACATGAGATGTAGTGGATA+GGG - chr3.3:88456060-88456079 None:intergenic 35.0%
!! AATGTTAGCTCTAACCAACT+TGG - chr3.3:88455763-88455782 None:intergenic 35.0%
!! GAATCTATCACTTTTGCAGA+TGG + chr3.3:88455627-88455646 MS.gene85640:CDS 35.0%
!! GACAAAGTTTTGGTAGTTAG+AGG - chr3.3:88455531-88455550 None:intergenic 35.0%
AGGAATTATCTCTCTGCCAA+AGG + chr3.3:88456541-88456560 MS.gene85640:intron 40.0%
GACATGTGGTTGAATTCCTT+TGG - chr3.3:88456560-88456579 None:intergenic 40.0%
GTAAACAATTTCGACGATGG+CGG + chr3.3:88456327-88456346 MS.gene85640:CDS 40.0%
GTTTCCAACTCCTGTAGATT+AGG - chr3.3:88455684-88455703 None:intergenic 40.0%
TCCTGTCAGTTCACCTTAAA+TGG + chr3.3:88455400-88455419 MS.gene85640:CDS 40.0%
TCTACAGGAGTTGGAAACAA+AGG + chr3.3:88455686-88455705 MS.gene85640:CDS 40.0%
TTAAGGTGAACTGACAGGAA+GGG - chr3.3:88455399-88455418 None:intergenic 40.0%
TTAGAGCTAACATTTCCGGT+CGG + chr3.3:88455769-88455788 MS.gene85640:CDS 40.0%
TTCGGCAATCTGAATTGTCA+TGG - chr3.3:88456487-88456506 None:intergenic 40.0%
! ACCATTTAAGGTGAACTGAC+AGG - chr3.3:88455404-88455423 None:intergenic 40.0%
! AGATGAGATAAAAGGCATGC+TGG - chr3.3:88456375-88456394 None:intergenic 40.0%
! ATGTGAAGTACTTTGAGCGA+GGG - chr3.3:88455606-88455625 None:intergenic 40.0%
! TATTCTTGGGGCACCATTTA+AGG - chr3.3:88455416-88455435 None:intergenic 40.0%
! TTTAAGGTGAACTGACAGGA+AGG - chr3.3:88455400-88455419 None:intergenic 40.0%
AGAAAGGTTGTAGCCTGGTT+TGG + chr3.3:88455721-88455740 MS.gene85640:CDS 45.0%
AGGAGAGCCAGATAGAAGTT+TGG - chr3.3:88455664-88455683 None:intergenic 45.0%
ATGGAGCAATCAGAGTGAGA+GGG - chr3.3:88455489-88455508 None:intergenic 45.0%
CTCTCCTAATCTACAGGAGT+TGG + chr3.3:88455677-88455696 MS.gene85640:CDS 45.0%
GAAGCTTGGGGAAATGTGAA+AGG - chr3.3:88456173-88456192 None:intergenic 45.0%
GGGTAGATTCTTATCTCGAG+CGG - chr3.3:88455379-88455398 None:intergenic 45.0%
GGTAAAGAAAGGTTGTAGCC+TGG + chr3.3:88455716-88455735 MS.gene85640:CDS 45.0%
TATGGAGCAATCAGAGTGAG+AGG - chr3.3:88455490-88455509 None:intergenic 45.0%
TGGGCACATTCAAATGGAGA+TGG + chr3.3:88456136-88456155 MS.gene85640:CDS 45.0%
! CATGTGAAGTACTTTGAGCG+AGG - chr3.3:88455607-88455626 None:intergenic 45.0%
! CTCGCTCAAAGTACTTCACA+TGG + chr3.3:88455605-88455624 MS.gene85640:CDS 45.0%
!! ATCTGGCTCTCCTAATCTAC+AGG + chr3.3:88455671-88455690 MS.gene85640:CDS 45.0%
AGACATTGACCATGAACGGC+TGG + chr3.3:88456110-88456129 MS.gene85640:CDS 50.0%
AGCAATCAGAGTGAGAGGGA+TGG - chr3.3:88455485-88455504 None:intergenic 50.0%
AGTGAGAGGGATGGATGGTT+GGG - chr3.3:88455476-88455495 None:intergenic 50.0%
ATCAGAGTGAGAGGGATGGA+TGG - chr3.3:88455481-88455500 None:intergenic 50.0%
GACATTGACCATGAACGGCT+GGG + chr3.3:88456111-88456130 MS.gene85640:CDS 50.0%
TGGGACTGGGCACATTCAAA+TGG + chr3.3:88456130-88456149 MS.gene85640:CDS 50.0%
TTATCTCGAGCGGCGATGAA+GGG - chr3.3:88455369-88455388 None:intergenic 50.0%
! ACAATTTCGACGATGGCGGT+TGG + chr3.3:88456331-88456350 MS.gene85640:CDS 50.0%
CTTATCTCGAGCGGCGATGA+AGG - chr3.3:88455370-88455389 None:intergenic 55.0%
GAGTGAGAGGGATGGATGGT+TGG - chr3.3:88455477-88455496 None:intergenic 55.0%
! TTTCGACGATGGCGGTTGGA+AGG + chr3.3:88456335-88456354 MS.gene85640:CDS 55.0%
CGAGCATCTGCGCCTACATG+TGG + chr3.3:88455821-88455840 MS.gene85640:CDS 60.0%
GACCATGAACGGCTGGGACT+GGG + chr3.3:88456117-88456136 MS.gene85640:CDS 60.0%
TGACCATGAACGGCTGGGAC+TGG + chr3.3:88456116-88456135 MS.gene85640:CDS 60.0%
TGCCCAGTCCCAGCCGTTCA+TGG - chr3.3:88456122-88456141 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 88455327 88456654 88455327 ID=MS.gene85640
chr3.3 mRNA 88455327 88456654 88455327 ID=MS.gene85640.t1;Parent=MS.gene85640
chr3.3 exon 88455327 88455842 88455327 ID=MS.gene85640.t1.exon1;Parent=MS.gene85640.t1
chr3.3 CDS 88455327 88455842 88455327 ID=cds.MS.gene85640.t1;Parent=MS.gene85640.t1
chr3.3 exon 88456051 88456212 88456051 ID=MS.gene85640.t1.exon2;Parent=MS.gene85640.t1
chr3.3 CDS 88456051 88456212 88456051 ID=cds.MS.gene85640.t1;Parent=MS.gene85640.t1
chr3.3 exon 88456318 88456432 88456318 ID=MS.gene85640.t1.exon3;Parent=MS.gene85640.t1
chr3.3 CDS 88456318 88456432 88456318 ID=cds.MS.gene85640.t1;Parent=MS.gene85640.t1
chr3.3 exon 88456620 88456654 88456620 ID=MS.gene85640.t1.exon4;Parent=MS.gene85640.t1
chr3.3 CDS 88456620 88456654 88456620 ID=cds.MS.gene85640.t1;Parent=MS.gene85640.t1
Gene Sequence

>MS.gene85640

ATGTTCTACTTGGATGAAAAACACTCTCGAGACTCTCTACCCTTCATCGCCGCTCGAGATAAGAATCTACCCTTCCTGTCAGTTCACCTTAAATGGTGCCCCAAGAATAAAATTGTTTATGCCGCTATTCAACGACGACTTTATAACCCAACCATCCATCCCTCTCACTCTGATTGCTCCATAATCAAATCGTCTTCTTTCCCTCTAACTACCAAAACTTTGTCATTCCTCAAATTGAAGATGATAACAATCAGCCAAGTTTCAAACGTTGATCTTCCCTCGCTCAAAGTACTTCACATGGAATCTATCACTTTTGCAGATGGTGAATATCTCACCAAACTTCTATCTGGCTCTCCTAATCTACAGGAGTTGGAAACAAAGGATTTAGTGGTAAAGAAAGGTTGTAGCCTGGTTTGGAATGATACAAACTTATCCAAGTTGGTTAGAGCTAACATTTCCGGTCGGCATATTATGTTTAAGCAACTTTATAACGTCGAGCATCTGCGCCTACATGTGGTATGTATATCAATATATTTATCAAATTTACAAAATACTAGCAAATTACATTAGTCTCTTAAGTTAAGATAATCAATTTACCAGAAAAATTACGAATTGAGTCACATTGTTCAATTTAAGGGAGTAAATTGCTATTTCTCTCAATTTTCAAGGATGAAAATTTTGATTTACTCAACTCATTAATATTATGTCTTTGCAACTCATGCAGACATGTCCCTATCCACTACATCTCATGTTTGACAATCTAACTCATCTGGAGCTTACATTAGACATTGACCATGAACGGCTGGGACTGGGCACATTCAAATGGAGATGGCTGAATATTCTCCTTTCACATTTCCCCAAGCTTCAAACTCTTATCATTCATGAGGTTTTTAATGTCAAGTTTTGTCATGTCTTTTCTTTTCCATTCCATTCCACTTCTATGTATTTTTTTTATATCTTTCAAAACATTTCAACTGTGTATCATTGTCAGGTTGATACAGTAAACAATTTCGACGATGGCGGTTGGAAGGAACTACATACTGTACCAGCATGCCTTTTATCTCATCTCACAACATGCTCACTTAGAAATTACTGCCGCATAAACTGTGAGATTCAATTTGCAAAATATATCTTGAAGAACTCAAGAGTACTAAACACCATGACAATTCAGATTGCCGAATCAGTAGATACAAATACAAAACTCCAAACGATCAAGGAATTATCTCTCTGCCAAAGGAATTCAACCACATGTCAACTTTTATTTATTTGAATGATAATGGATGGAGCGTGCAGTAGCAGCAGCCTTAAGCTTGTCACAAACATTGTAA
Protein sequence

>MS.gene85640.t1

MFYLDEKHSRDSLPFIAARDKNLPFLSVHLKWCPKNKIVYAAIQRRLYNPTIHPSHSDCSIIKSSSFPLTTKTLSFLKLKMITISQVSNVDLPSLKVLHMESITFADGEYLTKLLSGSPNLQELETKDLVVKKGCSLVWNDTNLSKLVRANISGRHIMFKQLYNVEHLRLHVTCPYPLHLMFDNLTHLELTLDIDHERLGLGTFKWRWLNILLSHFPKLQTLIIHEVDTVNNFDDGGWKELHTVPACLLSHLTTCSLRNYCRINLAAALSLSQTL