AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07669

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07669.t1 MTR_4g056040 61.343 432 69 8 1 334 1 432 3.39e-165 471
MS.gene07669.t1 MTR_4g056020 58.706 402 98 7 1 334 1 402 3.24e-146 421
MS.gene07669.t1 MTR_4g056070 55.835 437 85 9 1 329 1 437 7.37e-141 406
MS.gene07669.t1 MTR_4g055990 51.570 446 102 10 1 334 1 444 9.80e-129 377
MS.gene07669.t1 MTR_4g055990 51.570 446 102 10 1 334 1 444 1.05e-128 377
MS.gene07669.t1 MTR_4g055580 52.511 438 104 9 1 334 92 529 5.76e-122 363
MS.gene07669.t1 MTR_4g056030 75.862 174 42 0 161 334 229 402 2.89e-88 273
MS.gene07669.t1 MTR_4g056030 58.929 168 27 2 1 162 1 132 2.31e-53 182
MS.gene07669.t1 MTR_1g038710 69.274 179 55 0 156 334 240 418 2.61e-77 244
MS.gene07669.t1 MTR_1g038710 56.627 166 38 2 1 162 11 146 6.37e-46 162
MS.gene07669.t1 MTR_7g110920 61.735 196 58 1 156 334 93 288 4.25e-74 232
MS.gene07669.t1 MTR_4g056020 83.962 106 17 0 229 334 1 106 7.76e-59 187
MS.gene07669.t1 MTR_1g090883 72.269 119 33 0 161 279 239 357 1.40e-49 170
MS.gene07669.t1 MTR_1g090883 49.091 165 41 3 2 159 12 140 2.68e-36 135
MS.gene07669.t1 MTR_1g090900 49.405 168 40 4 1 159 1 132 7.24e-38 134
MS.gene07669.t1 MTR_4g056010 88.889 63 7 0 98 160 1 63 5.38e-33 118
MS.gene07669.t1 MTR_4g093690 33.948 271 104 9 1 200 10 276 3.53e-29 113
MS.gene07669.t1 MTR_1g090890 69.643 56 14 1 282 334 29 84 1.36e-18 80.9
MS.gene07669.t1 MTR_7g056433 27.424 361 196 14 9 331 12 344 4.07e-17 82.0
MS.gene07669.t1 MTR_7g032380 25.223 337 203 11 9 331 11 312 1.13e-16 80.5
MS.gene07669.t1 MTR_7g034115 26.230 366 190 13 9 331 11 339 1.16e-15 77.4
MS.gene07669.t1 MTR_7g115270 23.810 378 201 10 9 331 12 357 1.14e-14 74.7
MS.gene07669.t1 MTR_7g033990 25.556 360 200 11 9 331 11 339 3.76e-14 73.2
MS.gene07669.t1 MTR_7g034110 24.762 315 182 9 9 312 11 281 1.30e-13 71.2
MS.gene07669.t1 MTR_1g108800 26.444 329 197 8 9 331 8 297 1.72e-13 70.9
MS.gene07669.t1 MTR_7g098510 26.902 368 185 13 9 331 18 346 9.07e-13 68.9
MS.gene07669.t1 MTR_7g110910 81.579 38 7 0 1 38 158 195 5.57e-12 64.3
MS.gene07669.t1 MTR_6g022390 29.221 154 85 5 9 159 5 137 1.59e-11 62.0
MS.gene07669.t1 MTR_2g007100 56.818 44 19 0 9 52 2 45 6.51e-11 58.2
MS.gene07669.t1 MTR_8g017280 27.542 236 137 7 4 233 31 238 8.83e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07669.t1 AT5G38570 25.070 355 209 13 9 331 2 331 1.04e-13 72.0
MS.gene07669.t1 AT3G59190 26.087 230 145 7 6 232 9 216 2.84e-13 70.5
MS.gene07669.t1 AT3G59190 26.087 230 145 7 6 232 9 216 5.01e-13 70.1
MS.gene07669.t1 AT3G49030 25.067 375 209 12 6 319 18 381 8.88e-13 69.3
MS.gene07669.t1 AT3G03040 33.775 151 78 2 9 158 2 131 1.12e-12 68.9
MS.gene07669.t1 AT3G58820 25.545 321 167 9 9 282 2 297 1.31e-12 68.6
MS.gene07669.t1 AT3G03030 33.766 154 74 4 9 158 2 131 1.96e-12 67.8
MS.gene07669.t1 AT5G38392 34.868 152 69 6 9 154 2 129 2.23e-12 65.9
MS.gene07669.t1 AT3G03030 33.766 154 74 4 9 158 2 131 5.56e-12 67.0
MS.gene07669.t1 AT5G38386 25.153 326 161 10 9 279 2 299 1.52e-11 65.5
MS.gene07669.t1 AT5G38386 25.153 326 161 10 9 279 2 299 1.52e-11 65.5
MS.gene07669.t1 AT3G59000 33.526 173 90 5 9 177 2 153 1.92e-11 65.5
MS.gene07669.t1 AT4G00315 26.596 282 146 12 9 278 2 234 2.13e-11 65.1
MS.gene07669.t1 AT1G58310 24.364 275 156 8 9 277 8 236 2.72e-11 65.1
MS.gene07669.t1 AT3G59150 31.414 191 82 9 9 176 13 177 3.17e-11 64.7

Find 62 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTACATTTGAATTTAA+AGG 0.124626 4.1:+42489109 MS.gene07669:CDS
ATTGCAAGATACGTAAGTTT+TGG 0.274598 4.1:-42488663 None:intergenic
GCAGATCGACTCCCATCTTT+TGG 0.302315 4.1:-42487578 None:intergenic
GTTTCCAACCTCCTTTCTTC+GGG 0.367541 4.1:-42489038 None:intergenic
AGTTTCCAACCTCCTTTCTT+CGG 0.370618 4.1:-42489039 None:intergenic
GTAAACAGACTTGATTTGTT+CGG 0.396934 4.1:-42487656 None:intergenic
ACTTTCTAATGTCAAATCAT+TGG 0.410912 4.1:+42488398 MS.gene07669:CDS
AAAGTGAAGGTTGGGAATCT+TGG 0.417455 4.1:-42487602 None:intergenic
TAGAAAGAACTTCAAGTGTC+GGG 0.418139 4.1:-42488254 None:intergenic
AAGAGTGGCTTGATGAAGAT+TGG 0.427413 4.1:-42488325 None:intergenic
ATACGACAAATCAAATCGTC+TGG 0.434163 4.1:-42487508 None:intergenic
CAAAATCTTGATAGTGAGAA+AGG 0.438135 4.1:+42487697 MS.gene07669:CDS
GGTAATTGAAAGTGAAGGTT+GGG 0.443422 4.1:-42487610 None:intergenic
ACATATCCAAGTCAAGTTCC+TGG 0.443706 4.1:-42487882 None:intergenic
CTAAGGCTCGAGAGCGAGAA+AGG 0.450221 4.1:+42487805 MS.gene07669:CDS
ACCCACATGTGTACATCATT+TGG 0.460055 4.1:-42487835 None:intergenic
AAATTCAAATGTAATGAGAC+TGG 0.466724 4.1:-42489104 None:intergenic
CATGTGTTCTATCCAAAAGA+TGG 0.467948 4.1:+42487566 MS.gene07669:CDS
ACTTACGTATCTTGCAATTG+AGG 0.471269 4.1:+42488668 MS.gene07669:CDS
CAAGGTCCAGGAACTTGACT+TGG 0.473462 4.1:+42487876 MS.gene07669:CDS
TGATTTGTTCGGACAACAAA+GGG 0.479160 4.1:-42487645 None:intergenic
TGAAATCAATTCCCGAAGAA+AGG 0.482837 4.1:+42489027 MS.gene07669:CDS
GGCATTAGATCTCAAGGTCC+AGG 0.496808 4.1:+42487864 MS.gene07669:CDS
AGGAGGTTGGAAACTCTAGC+TGG 0.498435 4.1:+42489047 MS.gene07669:CDS
TGTTCAGATGTGGGTTTCAA+AGG 0.500805 4.1:+42487735 MS.gene07669:CDS
TAATCGATCGTGTTCTGCAT+CGG 0.505362 4.1:-42487476 None:intergenic
GTATACAAACTGTTAAAATC+CGG 0.506388 4.1:-42488363 None:intergenic
AACAAAGGGTCTGAAATCTC+TGG 0.515254 4.1:-42487631 None:intergenic
GAAACTTACATGAAATGTGT+TGG 0.516194 4.1:-42488430 None:intergenic
AAAATCCGGACTCTGACAAA+AGG 0.522949 4.1:-42488349 None:intergenic
TGTACACATGTGGGTTTCAA+AGG 0.528762 4.1:+42487843 MS.gene07669:CDS
CCGAAAATATAAGAAAACTA+AGG 0.538047 4.1:+42487788 MS.gene07669:CDS
AGTTTGTATACACTCTTGAA+AGG 0.538294 4.1:+42488375 MS.gene07669:CDS
TTCAAAGGCATTAGATCTCA+AGG 0.542872 4.1:+42487858 MS.gene07669:CDS
ATAGAAAGAACTTCAAGTGT+CGG 0.549697 4.1:-42488255 None:intergenic
TGGTAATTGAAAGTGAAGGT+TGG 0.551378 4.1:-42487611 None:intergenic
AATGTCAAATCATTGGCTCT+CGG 0.552626 4.1:+42488405 MS.gene07669:CDS
TCCACATGATGTTCAGATGT+GGG 0.555865 4.1:+42487726 MS.gene07669:CDS
ATGTGTTCTATCCAAAAGAT+GGG 0.563690 4.1:+42487567 MS.gene07669:CDS
GGTGGAGCCATCAGTGACTC+CGG 0.564226 4.1:+42489069 MS.gene07669:CDS
TGTCATGCAGTTTCTCAGCA+TGG 0.568272 4.1:+42488527 MS.gene07669:intron
TACGACAAATCAAATCGTCT+GGG 0.573938 4.1:-42487507 None:intergenic
ACATGTGTACATCATTTGGC+TGG 0.590853 4.1:-42487831 None:intergenic
AATTCCCGAAGAAAGGAGGT+TGG 0.591474 4.1:+42489034 MS.gene07669:CDS
AAATATCTGAGAGTTGCAGT+TGG 0.597797 4.1:+42488610 MS.gene07669:CDS
ACCCACATCTGAACATCATG+TGG 0.601050 4.1:-42487727 None:intergenic
AGACATGCCGGAGTCACTGA+TGG 0.608044 4.1:-42489076 None:intergenic
GGAGGTTGGAAACTCTAGCT+GGG 0.609970 4.1:+42489048 MS.gene07669:CDS
GCCAAATGATGTACACATGT+GGG 0.612968 4.1:+42487834 MS.gene07669:CDS
TTGATTTGTTCGGACAACAA+AGG 0.614158 4.1:-42487646 None:intergenic
GGAAAGCCTAAGCGGCAACA+AGG 0.615818 4.1:-42487920 None:intergenic
AGACTGGTTATAAGACATGC+CGG 0.617236 4.1:-42489088 None:intergenic
AATCAATTCCCGAAGAAAGG+AGG 0.619715 4.1:+42489030 MS.gene07669:CDS
ATCCACATGATGTTCAGATG+TGG 0.620600 4.1:+42487725 MS.gene07669:CDS
ACTCTGACAAAAGGAAAGAG+TGG 0.624885 4.1:-42488340 None:intergenic
AGAAAGAACTTCAAGTGTCG+GGG 0.629893 4.1:-42488253 None:intergenic
AGCCAAATGATGTACACATG+TGG 0.670458 4.1:+42487833 MS.gene07669:CDS
AATGTCTAGAACAACAAGAG+AGG 0.671166 4.1:-42489412 None:intergenic
TCACAAGTGGAAAGCCTAAG+CGG 0.683053 4.1:-42487928 None:intergenic
CATGCAGTTTCTCAGCATGG+AGG 0.688384 4.1:+42488530 MS.gene07669:intron
GGTTGGAAACTCTAGCTGGG+TGG 0.692044 4.1:+42489051 MS.gene07669:CDS
TCTCTGGTAATTGAAAGTGA+AGG 0.696256 4.1:-42487615 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATTAATTAATTTGTTTAT+CGG - chr4.1:42488822-42488841 None:intergenic 10.0%
!!! TCACAGTTTATTATTTTTAT+CGG + chr4.1:42488584-42488603 MS.gene07669:CDS 15.0%
!!! TTTGTTTTCTTATATATTCT+TGG - chr4.1:42487681-42487700 None:intergenic 15.0%
!! AAAATTCTAACGATAATGTT+TGG + chr4.1:42488985-42489004 MS.gene07669:intron 20.0%
!! CTCATTACATTTGAATTTAA+AGG + chr4.1:42489109-42489128 MS.gene07669:CDS 20.0%
!! GTAAATAAACATAAAACTGT+AGG - chr4.1:42488916-42488935 None:intergenic 20.0%
!!! CAAATTTTAGAAACAGAAAA+AGG - chr4.1:42488216-42488235 None:intergenic 20.0%
!!! CCTTAGTTTTCTTATATTTT+CGG - chr4.1:42487791-42487810 None:intergenic 20.0%
!!! TCTTTTCTAATGAAAAAAGT+TGG + chr4.1:42489338-42489357 MS.gene07669:intron 20.0%
! AAAAAGGCAAAAACAAAGAA+AGG - chr4.1:42488200-42488219 None:intergenic 25.0%
! AAATTCAAATGTAATGAGAC+TGG - chr4.1:42489107-42489126 None:intergenic 25.0%
! AAGAATATATCACAGTTGAT+CGG - chr4.1:42488047-42488066 None:intergenic 25.0%
! ACTTTCTAATGTCAAATCAT+TGG + chr4.1:42488398-42488417 MS.gene07669:CDS 25.0%
! AGCTTAAAAGAAGGTTAAAT+TGG - chr4.1:42488887-42488906 None:intergenic 25.0%
! AGGAATTCAAGACATAAAAA+CGG + chr4.1:42489129-42489148 MS.gene07669:CDS 25.0%
! CCGAAAATATAAGAAAACTA+AGG + chr4.1:42487788-42487807 MS.gene07669:CDS 25.0%
! CTATTTACTATATATCCAGT+TGG + chr4.1:42488954-42488973 MS.gene07669:intron 25.0%
! GTATACAAACTGTTAAAATC+CGG - chr4.1:42488366-42488385 None:intergenic 25.0%
! TAAAAGAAGGTTAAATTGGT+AGG - chr4.1:42488883-42488902 None:intergenic 25.0%
! TTGAGAATAGAATTGTATGT+GGG - chr4.1:42488497-42488516 None:intergenic 25.0%
!! ACTCTTCTTTTCTTTAAACT+GGG - chr4.1:42489220-42489239 None:intergenic 25.0%
!! GAAAGTATATAAAGTCTATG+TGG - chr4.1:42489320-42489339 None:intergenic 25.0%
!! GATCTCAATAATTTTCTATC+TGG + chr4.1:42488090-42488109 MS.gene07669:intron 25.0%
!! TACTCTTCTTTTCTTTAAAC+TGG - chr4.1:42489221-42489240 None:intergenic 25.0%
!! TTTGCAAACTCATATTTTCT+AGG - chr4.1:42488300-42488319 None:intergenic 25.0%
AAGATGATAAGCTCAAAATC+TGG + chr4.1:42488745-42488764 MS.gene07669:intron 30.0%
AGATGAAGAATCTTTAGTGA+CGG - chr4.1:42488024-42488043 None:intergenic 30.0%
AGGTAAAACAGCTTAAAAGA+AGG - chr4.1:42488896-42488915 None:intergenic 30.0%
AGTTTGTATACACTCTTGAA+AGG + chr4.1:42488375-42488394 MS.gene07669:CDS 30.0%
ATAGAAAGAACTTCAAGTGT+CGG - chr4.1:42488258-42488277 None:intergenic 30.0%
ATGTGTTCTATCCAAAAGAT+GGG + chr4.1:42487567-42487586 MS.gene07669:CDS 30.0%
ATTTCATACCCATACTAGTA+CGG - chr4.1:42489278-42489297 None:intergenic 30.0%
CTTGAGAATAGAATTGTATG+TGG - chr4.1:42488498-42488517 None:intergenic 30.0%
GAAACTTACATGAAATGTGT+TGG - chr4.1:42488433-42488452 None:intergenic 30.0%
TATATATCCAGTTGGAAAGT+TGG + chr4.1:42488962-42488981 MS.gene07669:intron 30.0%
TCACTCAAATAAGTTAGAGA+AGG + chr4.1:42489180-42489199 MS.gene07669:intron 30.0%
TGAAAAGAAGAATTGAGTGT+TGG - chr4.1:42487991-42488010 None:intergenic 30.0%
! ATTGCAAGATACGTAAGTTT+TGG - chr4.1:42488666-42488685 None:intergenic 30.0%
! ATTTGTTGGTAAGATGTTGT+GGG + chr4.1:42489370-42489389 MS.gene07669:intron 30.0%
! TATTTGTTGGTAAGATGTTG+TGG + chr4.1:42489369-42489388 MS.gene07669:intron 30.0%
!! CAAAATCTTGATAGTGAGAA+AGG + chr4.1:42487697-42487716 MS.gene07669:CDS 30.0%
!! GTAAACAGACTTGATTTGTT+CGG - chr4.1:42487659-42487678 None:intergenic 30.0%
AAATAAAGTTCCTCCAGATG+TGG - chr4.1:42488120-42488139 None:intergenic 35.0%
AAATATCTGAGAGTTGCAGT+TGG + chr4.1:42488610-42488629 MS.gene07669:CDS 35.0%
ACTTACGTATCTTGCAATTG+AGG + chr4.1:42488668-42488687 MS.gene07669:CDS 35.0%
AGTAGAAAAAAGCTTACGCA+AGG + chr4.1:42489237-42489256 MS.gene07669:intron 35.0%
ATACGACAAATCAAATCGTC+TGG - chr4.1:42487511-42487530 None:intergenic 35.0%
CATGTGTTCTATCCAAAAGA+TGG + chr4.1:42487566-42487585 MS.gene07669:CDS 35.0%
GGTAATTGAAAGTGAAGGTT+GGG - chr4.1:42487613-42487632 None:intergenic 35.0%
GTAGAAAAAAGCTTACGCAA+GGG + chr4.1:42489238-42489257 MS.gene07669:intron 35.0%
GTTGGCATGCTAATATTTGT+TGG + chr4.1:42489356-42489375 MS.gene07669:intron 35.0%
TACGACAAATCAAATCGTCT+GGG - chr4.1:42487510-42487529 None:intergenic 35.0%
TAGAAAAAAGCTTACGCAAG+GGG + chr4.1:42489239-42489258 MS.gene07669:intron 35.0%
TAGAAAGAACTTCAAGTGTC+GGG - chr4.1:42488257-42488276 None:intergenic 35.0%
TCAAGACATAAAAACGGAGT+TGG + chr4.1:42489135-42489154 MS.gene07669:CDS 35.0%
TCTCTGGTAATTGAAAGTGA+AGG - chr4.1:42487618-42487637 None:intergenic 35.0%
TCTCTTCAAGAAGTGAAAAG+AGG - chr4.1:42488172-42488191 None:intergenic 35.0%
TGAAATCAATTCCCGAAGAA+AGG + chr4.1:42489027-42489046 MS.gene07669:CDS 35.0%
TGGTAATTGAAAGTGAAGGT+TGG - chr4.1:42487614-42487633 None:intergenic 35.0%
TGTATGTGGGTGACAAAATA+TGG - chr4.1:42488484-42488503 None:intergenic 35.0%
! ACTAGTGGTCTTAAAATTGC+GGG + chr4.1:42487954-42487973 MS.gene07669:intron 35.0%
! CACTAGTGGTCTTAAAATTG+CGG + chr4.1:42487953-42487972 MS.gene07669:intron 35.0%
! GAATTTTCCAACTTTCCAAC+TGG - chr4.1:42488972-42488991 None:intergenic 35.0%
! TTTGTTGGTAAGATGTTGTG+GGG + chr4.1:42489371-42489390 MS.gene07669:intron 35.0%
!! AATGTCAAATCATTGGCTCT+CGG + chr4.1:42488405-42488424 MS.gene07669:CDS 35.0%
!! GAAGTGAAAAGAGGTATTGA+TGG - chr4.1:42488163-42488182 None:intergenic 35.0%
!! TGATTTGTTCGGACAACAAA+GGG - chr4.1:42487648-42487667 None:intergenic 35.0%
!! TTCAAAGGCATTAGATCTCA+AGG + chr4.1:42487858-42487877 MS.gene07669:CDS 35.0%
!! TTGATTTGTTCGGACAACAA+AGG - chr4.1:42487649-42487668 None:intergenic 35.0%
AAAATCCGGACTCTGACAAA+AGG - chr4.1:42488352-42488371 None:intergenic 40.0%
AAAGTGAAGGTTGGGAATCT+TGG - chr4.1:42487605-42487624 None:intergenic 40.0%
AAGAGTGGCTTGATGAAGAT+TGG - chr4.1:42488328-42488347 None:intergenic 40.0%
AATCAATTCCCGAAGAAAGG+AGG + chr4.1:42489030-42489049 MS.gene07669:CDS 40.0%
ACATATCCAAGTCAAGTTCC+TGG - chr4.1:42487885-42487904 None:intergenic 40.0%
ACATGTGTACATCATTTGGC+TGG - chr4.1:42487834-42487853 None:intergenic 40.0%
ACCCACATGTGTACATCATT+TGG - chr4.1:42487838-42487857 None:intergenic 40.0%
ACTCTGACAAAAGGAAAGAG+TGG - chr4.1:42488343-42488362 None:intergenic 40.0%
AGAAATCCTCCGTACTAGTA+TGG + chr4.1:42489266-42489285 MS.gene07669:intron 40.0%
AGCCAAATGATGTACACATG+TGG + chr4.1:42487833-42487852 MS.gene07669:CDS 40.0%
AGTTTCCAACCTCCTTTCTT+CGG - chr4.1:42489042-42489061 None:intergenic 40.0%
ATCCACATGATGTTCAGATG+TGG + chr4.1:42487725-42487744 MS.gene07669:CDS 40.0%
GAAATCCTCCGTACTAGTAT+GGG + chr4.1:42489267-42489286 MS.gene07669:intron 40.0%
GCCAAATGATGTACACATGT+GGG + chr4.1:42487834-42487853 MS.gene07669:CDS 40.0%
TAATCGATCGTGTTCTGCAT+CGG - chr4.1:42487479-42487498 None:intergenic 40.0%
TCCACATGATGTTCAGATGT+GGG + chr4.1:42487726-42487745 MS.gene07669:CDS 40.0%
TGTACACATGTGGGTTTCAA+AGG + chr4.1:42487843-42487862 MS.gene07669:CDS 40.0%
TGTTCAGATGTGGGTTTCAA+AGG + chr4.1:42487735-42487754 MS.gene07669:CDS 40.0%
! AAAAAACCTTGTTGCCGCTT+AGG + chr4.1:42487914-42487933 MS.gene07669:CDS 40.0%
! AACAAAGGGTCTGAAATCTC+TGG - chr4.1:42487634-42487653 None:intergenic 40.0%
! AGAAAGAACTTCAAGTGTCG+GGG - chr4.1:42488256-42488275 None:intergenic 40.0%
! AGACTGGTTATAAGACATGC+CGG - chr4.1:42489091-42489110 None:intergenic 40.0%
! CTAGTGGTCTTAAAATTGCG+GGG + chr4.1:42487955-42487974 MS.gene07669:intron 40.0%
! TCTTTCCTTTTGTCAGAGTC+CGG + chr4.1:42488344-42488363 MS.gene07669:CDS 40.0%
!! GGTATTGATGGCTATTCGAA+AGG - chr4.1:42488151-42488170 None:intergenic 40.0%
AATTCCCGAAGAAAGGAGGT+TGG + chr4.1:42489034-42489053 MS.gene07669:CDS 45.0%
ACCCACATCTGAACATCATG+TGG - chr4.1:42487730-42487749 None:intergenic 45.0%
GCACAAGAAGAGCAAAGACT+TGG + chr4.1:42488767-42488786 MS.gene07669:intron 45.0%
GTTTCCAACCTCCTTTCTTC+GGG - chr4.1:42489041-42489060 None:intergenic 45.0%
TCACAAGTGGAAAGCCTAAG+CGG - chr4.1:42487931-42487950 None:intergenic 45.0%
TCATACCCATACTAGTACGG+AGG - chr4.1:42489275-42489294 None:intergenic 45.0%
TCTATCTGGTTGTCCACATC+TGG + chr4.1:42488104-42488123 MS.gene07669:intron 45.0%
TGTCATGCAGTTTCTCAGCA+TGG + chr4.1:42488527-42488546 MS.gene07669:intron 45.0%
TTCCACTTGTGAGTCACTAG+TGG + chr4.1:42487939-42487958 MS.gene07669:intron 45.0%
!! GTCGGGGCATTAATTTGTAC+TGG - chr4.1:42488240-42488259 None:intergenic 45.0%
!!! GCGGCAACAAGGTTTTTTCA+TGG - chr4.1:42487912-42487931 None:intergenic 45.0%
AGGAGGTTGGAAACTCTAGC+TGG + chr4.1:42489047-42489066 MS.gene07669:CDS 50.0%
ATCTGGTTGTCCACATCTGG+AGG + chr4.1:42488107-42488126 MS.gene07669:intron 50.0%
CAAGGTCCAGGAACTTGACT+TGG + chr4.1:42487876-42487895 MS.gene07669:CDS 50.0%
CATGCAGTTTCTCAGCATGG+AGG + chr4.1:42488530-42488549 MS.gene07669:intron 50.0%
GACCACTAGTGACTCACAAG+TGG - chr4.1:42487944-42487963 None:intergenic 50.0%
GGAGGTTGGAAACTCTAGCT+GGG + chr4.1:42489048-42489067 MS.gene07669:CDS 50.0%
GGCATTAGATCTCAAGGTCC+AGG + chr4.1:42487864-42487883 MS.gene07669:CDS 50.0%
! GTTGGTAAGATGTTGTGGGG+TGG + chr4.1:42489374-42489393 MS.gene07669:intron 50.0%
!! GCAGATCGACTCCCATCTTT+TGG - chr4.1:42487581-42487600 None:intergenic 50.0%
AGACATGCCGGAGTCACTGA+TGG - chr4.1:42489079-42489098 None:intergenic 55.0%
CTAAGGCTCGAGAGCGAGAA+AGG + chr4.1:42487805-42487824 MS.gene07669:CDS 55.0%
GGAAAGCCTAAGCGGCAACA+AGG - chr4.1:42487923-42487942 None:intergenic 55.0%
GGTTGGAAACTCTAGCTGGG+TGG + chr4.1:42489051-42489070 MS.gene07669:CDS 55.0%
GGTGGAGCCATCAGTGACTC+CGG + chr4.1:42489069-42489088 MS.gene07669:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 42487466 42489429 42487466 ID=MS.gene07669
chr4.1 mRNA 42487466 42489429 42487466 ID=MS.gene07669.t1;Parent=MS.gene07669
chr4.1 exon 42487466 42487946 42487466 ID=MS.gene07669.t1.exon1;Parent=MS.gene07669.t1
chr4.1 CDS 42487466 42487946 42487466 ID=cds.MS.gene07669.t1;Parent=MS.gene07669.t1
chr4.1 exon 42488241 42488443 42488241 ID=MS.gene07669.t1.exon2;Parent=MS.gene07669.t1
chr4.1 CDS 42488241 42488443 42488241 ID=cds.MS.gene07669.t1;Parent=MS.gene07669.t1
chr4.1 exon 42488537 42488689 42488537 ID=MS.gene07669.t1.exon3;Parent=MS.gene07669.t1
chr4.1 CDS 42488537 42488689 42488537 ID=cds.MS.gene07669.t1;Parent=MS.gene07669.t1
chr4.1 exon 42489019 42489174 42489019 ID=MS.gene07669.t1.exon4;Parent=MS.gene07669.t1
chr4.1 CDS 42489019 42489174 42489019 ID=cds.MS.gene07669.t1;Parent=MS.gene07669.t1
chr4.1 exon 42489403 42489429 42489403 ID=MS.gene07669.t1.exon5;Parent=MS.gene07669.t1
chr4.1 CDS 42489403 42489429 42489403 ID=cds.MS.gene07669.t1;Parent=MS.gene07669.t1
Gene Sequence

>MS.gene07669

ATGGCGTGCTCCGATGCAGAACACGATCGATTAAGCAATCTCCCAGACGATTTGATTTGTCGTATTTTGTCTTTCATATCAACAAAAGAGTCTTATAGAACATGTGTTCTATCCAAAAGATGGGAGTCGATCTGCACCAAGATTCCCAACCTTCACTTTCAATTACCAGAGATTTCAGACCCTTTGTTGTCCGAACAAATCAAGTCTGTTTACCAAGAATATATAAGAAAACAAAATCTTGATAGTGAGAAAGGTTGCGATCCACATGATGTTCAGATGTGGGTTTCAAAGGCATTTGTAAATTTTGCTCTGCTAAGACGCACCGAAAATATAAGAAAACTAAGGCTCGAGAGCGAGAAAGGCTGCCAGCCAAATGATGTACACATGTGGGTTTCAAAGGCATTAGATCTCAAGGTCCAGGAACTTGACTTGGATATGTTTCTCCATGAAAAAACCTTGTTGCCGCTTAGGCTTTCCACTTGTGAGTCACTAGTGGTCTTAAAATTGCGGGGCAGAATTCAACCAACACTCAATTCTTCTTTTCATGTATATTTACCGTCACTAAAGATTCTTCATCTCCGATCAACTGTGATATATTCTTTCTTTGATGATCAAAAAGAGTATGATCTCAATAATTTTCTATCTGGTTGTCCACATCTGGAGGAACTTTATTTAAATGAGACCTTTCGAATAGCCATCAATACCTCTTTTCACTTCTTGAAGAGATTTTACCTTTCTTTGTTTTTGCCTTTTTCTGTTTCTAAAATTTGTCCAGTACAAATTAATGCCCCGACACTTGAAGTTCTTTCTATTATTGATCTTTCATTGACTCCTAGAAAATATGAGTTTGCAAACTTGTCCAATCTTCATCAAGCCACTCTTTCCTTTTGTCAGAGTCCGGATTTTAACAGTTTGTATACACTCTTGAAAGGACTTTCTAATGTCAAATCATTGGCTCTCGGTTCCAACACATTTCATGTAAGTTTCATAATCTCTTCTTTTTTAATTACAAGTTCCATATTTTGTCACCCACATACAATTCTATTCTCAAGATATTATTTTGTCATGCAGTTTCTCAGCATGGAGGACAAACTTGACAACTTACATCTTCTCACTTTTCACAGTTTATTATTTTTATCGGTTGAAATATCTGAGAGTTGCAGTTGGAATATGCTCGTCAGCTTTCTGCAGAATGCTCCAAAACTTACGTATCTTGCAATTGAGGTGTGTATGATGTTTTTTTTAAACTATATTTGCACAATATATTTTTAAAAGATAAAAGATGATAAGCTCAAAATCTGGCACAAGAAGAGCAAAGACTTGGCAAAAGATACATGTAGTTTGCAAATATAACCGATAAACAAATTAATTAATTCAAAACAATAGATATCTGATCTATATTTGTGTAGATTTTCCTACCAATTTAACCTTCTTTTAAGCTGTTTTACCTACAGTTTTATGTTTATTTACTTGATAATATAATTGAAACTATTTACTATATATCCAGTTGGAAAGTTGGAAAATTCTAACGATAATGTTTGGTTTACATGCAGAGAAAACTTGAAATCAATTCCCGAAGAAAGGAGGTTGGAAACTCTAGCTGGGTGGAGCCATCAGTGACTCCGGCATGTCTTATAACCAGTCTCATTACATTTGAATTTAAAGGAATTCAAGACATAAAAACGGAGTTGGACTTTACGCGATATATTGTAAGTCACTCAAATAAGTTAGAGAAGGTAAAGATTTTCACACCCAGTTTAAAGAAAAGAAGAGTAGAAAAAAGCTTACGCAAGGGGTCAAAGAAATCCTCCGTACTAGTATGGGTATGAAATTTACACACTTTCTTTTCTTCCACATAGACTTTATATACTTTCTTTTCTAATGAAAAAAGTTGGCATGCTAATATTTGTTGGTAAGATGTTGTGGGGTGGTGATAGAACTTTCATCCTCTCTTGTTGTTCTAG
Protein sequence

>MS.gene07669.t1

MACSDAEHDRLSNLPDDLICRILSFISTKESYRTCVLSKRWESICTKIPNLHFQLPEISDPLLSEQIKSVYQEYIRKQNLDSEKGCDPHDVQMWVSKAFVNFALLRRTENIRKLRLESEKGCQPNDVHMWVSKALDLKVQELDLDMFLHEKTLLPLRLSTLQINAPTLEVLSIIDLSLTPRKYEFANLSNLHQATLSFCQSPDFNSLYTLLKGLSNVKSLALGSNTFHFLSMEDKLDNLHLLTFHSLLFLSVEISESCSWNMLVSFLQNAPKLTYLAIERKLEINSRRKEVGNSSWVEPSVTPACLITSLITFEFKGIQDIKTELDFTRYINFHPLLLF