AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072984

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072984.t1 MTR_7g056020 91.667 264 22 0 1 264 57 320 2.81e-176 501
MS.gene072984.t1 MTR_3g108560 50.000 260 112 6 16 264 83 335 6.84e-64 205
MS.gene072984.t1 MTR_0492s0020 49.042 261 110 6 15 264 148 396 8.24e-61 199
MS.gene072984.t1 MTR_0543s0010 49.042 261 110 6 15 264 148 396 1.44e-60 198
MS.gene072984.t1 MTR_3g109982 55.172 203 84 3 66 264 222 421 6.21e-55 189
MS.gene072984.t1 MTR_3g109982 44.030 134 66 3 15 141 75 206 4.70e-20 90.1
MS.gene072984.t1 MTR_4g080610 43.382 272 110 5 4 259 56 299 8.96e-50 168
MS.gene072984.t1 MTR_3g087260 51.220 205 90 4 66 264 203 403 1.07e-49 170
MS.gene072984.t1 MTR_3g087260 42.857 119 65 2 15 131 64 181 3.24e-17 81.3
MS.gene072984.t1 MTR_3g108560 47.085 223 100 6 16 227 83 298 3.96e-44 152
MS.gene072984.t1 MTR_3g108150 41.727 278 136 8 4 260 57 329 1.13e-42 150
MS.gene072984.t1 MTR_7g088260 40.942 276 132 9 16 273 154 416 5.61e-42 150
MS.gene072984.t1 MTR_3g110010 53.333 165 70 3 66 226 222 383 1.36e-37 140
MS.gene072984.t1 MTR_3g110010 44.030 134 66 3 15 141 75 206 3.72e-20 90.5
MS.gene072984.t1 MTR_7g098570 34.686 271 154 8 3 260 75 335 1.62e-28 113
MS.gene072984.t1 MTR_7g098510 33.621 232 142 5 36 260 107 333 1.66e-27 109
MS.gene072984.t1 MTR_1g041245 35.021 237 133 9 36 260 102 329 5.73e-24 100
MS.gene072984.t1 MTR_7g098480 33.591 259 150 8 16 260 81 331 3.94e-23 98.6
MS.gene072984.t1 MTR_7g032380 30.973 226 124 6 37 260 104 299 2.42e-22 95.1
MS.gene072984.t1 MTR_7g115270 30.872 298 160 9 2 260 54 344 3.66e-22 95.1
MS.gene072984.t1 MTR_3g107940 58.621 87 33 1 178 264 85 168 1.65e-21 92.8
MS.gene072984.t1 MTR_7g032370 32.751 229 134 7 37 260 82 295 2.37e-21 92.4
MS.gene072984.t1 MTR_3g036250 33.585 265 136 12 16 260 68 312 1.01e-20 90.9
MS.gene072984.t1 MTR_7g034115 34.343 198 117 6 70 260 135 326 1.42e-19 87.8
MS.gene072984.t1 MTR_3g040700 31.818 264 141 11 16 260 106 349 1.84e-19 87.8
MS.gene072984.t1 MTR_7g026500 33.180 217 122 7 60 264 138 343 1.00e-18 85.5
MS.gene072984.t1 MTR_7g034120 30.651 261 151 10 18 258 3 253 6.74e-18 82.0
MS.gene072984.t1 MTR_5g007410 34.300 207 109 6 72 260 153 350 8.50e-18 83.2
MS.gene072984.t1 MTR_5g045170 32.922 243 129 7 36 260 107 333 1.23e-17 82.4
MS.gene072984.t1 MTR_7g060470 30.357 224 120 8 63 260 124 337 1.45e-17 82.0
MS.gene072984.t1 MTR_3g071850 31.984 247 129 8 36 260 122 351 3.09e-17 82.0
MS.gene072984.t1 MTR_7g007080 33.659 205 112 6 69 260 134 327 3.21e-17 80.9
MS.gene072984.t1 MTR_3g023630 31.780 236 134 7 36 260 101 320 7.99e-17 79.7
MS.gene072984.t1 MTR_5g054920 35.404 161 82 5 111 260 3 152 1.40e-16 76.3
MS.gene072984.t1 MTR_7g033990 29.670 273 164 8 18 273 76 337 2.14e-16 79.0
MS.gene072984.t1 MTR_6g045333 32.524 206 114 6 72 260 191 388 2.21e-16 79.0
MS.gene072984.t1 MTR_7g033915 34.731 167 95 6 111 273 163 319 3.59e-16 77.8
MS.gene072984.t1 MTR_7g056433 31.381 239 138 7 36 259 103 330 1.48e-15 76.3
MS.gene072984.t1 MTR_6g040270 29.952 207 112 8 69 260 132 320 2.81e-15 75.5
MS.gene072984.t1 MTR_5g083890 30.493 223 123 8 69 273 152 360 6.08e-15 74.7
MS.gene072984.t1 MTR_0009s0080 32.039 206 114 7 72 260 146 342 8.93e-15 73.9
MS.gene072984.t1 MTR_3g099830 29.864 221 124 7 64 265 115 323 1.39e-14 73.2
MS.gene072984.t1 MTR_5g073420 32.314 229 128 11 39 260 111 319 1.69e-14 73.2
MS.gene072984.t1 MTR_3g107100 31.863 204 118 6 69 260 137 331 1.99e-14 73.2
MS.gene072984.t1 MTR_3g082890 30.216 278 152 9 18 260 159 429 3.01e-14 72.8
MS.gene072984.t1 MTR_5g045510 30.348 201 105 4 72 260 137 314 8.46e-14 70.9
MS.gene072984.t1 MTR_3g107120 31.658 199 123 5 69 260 147 339 8.52e-14 71.2
MS.gene072984.t1 MTR_3g105060 31.000 200 112 7 69 260 138 319 1.17e-13 70.5
MS.gene072984.t1 MTR_7g021990 35.096 208 110 7 69 260 169 367 1.74e-13 70.1
MS.gene072984.t1 MTR_7g021950 35.096 208 110 7 69 260 169 367 2.57e-13 70.1
MS.gene072984.t1 MTR_4g039440 28.986 207 123 6 69 260 154 351 2.69e-13 69.7
MS.gene072984.t1 MTR_2g008320 31.401 207 114 8 69 260 178 371 3.84e-13 69.3
MS.gene072984.t1 MTR_5g058000 35.533 197 107 8 71 260 133 316 3.85e-13 68.9
MS.gene072984.t1 MTR_3g107160 29.435 248 136 11 30 260 106 331 7.24e-13 68.2
MS.gene072984.t1 MTR_6g022500 31.156 199 120 6 71 260 228 418 1.27e-12 67.8
MS.gene072984.t1 MTR_2g008310 31.553 206 114 7 69 260 124 316 1.89e-12 67.0
MS.gene072984.t1 MTR_1g108800 29.310 232 133 6 45 260 68 284 2.50e-12 66.6
MS.gene072984.t1 MTR_5g008950 27.805 205 120 7 70 260 119 309 3.09e-12 66.2
MS.gene072984.t1 MTR_1089s0010 28.856 201 120 7 69 260 132 318 5.22e-12 65.9
MS.gene072984.t1 MTR_2g007500 28.846 260 148 8 26 260 83 330 5.69e-12 65.5
MS.gene072984.t1 MTR_7g075800 27.419 248 125 10 69 273 146 381 6.95e-12 65.9
MS.gene072984.t1 MTR_1g085120 29.064 203 123 6 71 260 219 413 1.83e-11 64.3
MS.gene072984.t1 MTR_7g056287 26.697 221 129 8 53 260 114 314 1.91e-11 63.9
MS.gene072984.t1 MTR_1g085120 29.064 203 123 6 71 260 294 488 2.56e-11 63.9
MS.gene072984.t1 MTR_7g075820 25.475 263 163 9 21 273 113 352 6.88e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 65 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTTGGGGCACCATTTA+AGG 0.155891 3.3:-88562780 None:intergenic
TCCTGTCAGTTCACCTTAAA+TGG 0.205871 3.3:+88562767 MS.gene072984:CDS
TTGGTTAGAGCTAACATTTC+CGG 0.251204 3.3:+88563132 MS.gene072984:CDS
GAAAGAAGACGATTTGATTA+TGG 0.300322 3.3:-88562872 None:intergenic
TTTGAGGAATGACAAAGTTT+TGG 0.340722 3.3:-88562905 None:intergenic
GTTTCCAACTCCTGTAGATT+AGG 0.344495 3.3:-88563048 None:intergenic
AGGAGAGCCAGATAGAAGTT+TGG 0.370175 3.3:-88563028 None:intergenic
ATGATAAGAGTTTGAAGCTT+GGG 0.371251 3.3:-88563550 None:intergenic
AGAAAGGTTGTAGCCTGGTT+TGG 0.371341 3.3:+88563088 MS.gene072984:CDS
TTGTTATCATCTTCAATTTG+AGG 0.371938 3.3:-88562921 None:intergenic
TGACCATGAACGGCTGGGAC+TGG 0.382509 3.3:+88563483 MS.gene072984:CDS
TGCCCAGTCCCAGCCGTTCA+TGG 0.386281 3.3:-88563486 None:intergenic
TATCTCACCAAACTTCTATC+TGG 0.395723 3.3:+88563021 MS.gene072984:CDS
CAATGTTTGTGACAAGCTTA+AGG 0.403351 3.3:-88563996 None:intergenic
GTTTGACAATCTAACTCATC+TGG 0.419005 3.3:+88563444 MS.gene072984:CDS
GTTGGAAACAAAGGATTTAG+TGG 0.424824 3.3:+88563062 MS.gene072984:CDS
CTTATCTCGAGCGGCGATGA+AGG 0.426557 3.3:-88562734 None:intergenic
ATGTTGTGAGATGAGATAAA+AGG 0.431165 3.3:-88563747 None:intergenic
GAAGATCAACGTTTGAAACT+TGG 0.433414 3.3:-88562948 None:intergenic
AGTGAGAGGGATGGATGGTT+GGG 0.459409 3.3:-88562840 None:intergenic
CTCTCCTAATCTACAGGAGT+TGG 0.460236 3.3:+88563044 MS.gene072984:CDS
GTTACAACACATGTTCTACT+TGG 0.467444 3.3:+88562684 None:intergenic
ATCTGGCTCTCCTAATCTAC+AGG 0.469916 3.3:+88563038 MS.gene072984:CDS
AACATGAGATGTAGTGGATA+GGG 0.477530 3.3:-88563424 None:intergenic
AAGGATTTAGTGGTAAAGAA+AGG 0.482819 3.3:+88563072 MS.gene072984:CDS
GAGTGAGAGGGATGGATGGT+TGG 0.486728 3.3:-88562841 None:intergenic
AGACATTGACCATGAACGGC+TGG 0.491113 3.3:+88563477 MS.gene072984:CDS
GACCATGAACGGCTGGGACT+GGG 0.492790 3.3:+88563484 MS.gene072984:CDS
ACAATTTCGACGATGGCGGT+TGG 0.495888 3.3:+88563698 MS.gene072984:CDS
TTTCGACGATGGCGGTTGGA+AGG 0.511100 3.3:+88563702 MS.gene072984:CDS
TGATACAAACTTATCCAAGT+TGG 0.519438 3.3:+88563113 MS.gene072984:CDS
TGGGACTGGGCACATTCAAA+TGG 0.534280 3.3:+88563497 MS.gene072984:CDS
AAACATGAGATGTAGTGGAT+AGG 0.534808 3.3:-88563425 None:intergenic
ACCATTTAAGGTGAACTGAC+AGG 0.539597 3.3:-88562768 None:intergenic
TTATCTCGAGCGGCGATGAA+GGG 0.541006 3.3:-88562733 None:intergenic
AATGTTAGCTCTAACCAACT+TGG 0.545027 3.3:-88563127 None:intergenic
GGTAAAGAAAGGTTGTAGCC+TGG 0.546340 3.3:+88563083 MS.gene072984:CDS
CTCGCTCAAAGTACTTCACA+TGG 0.549068 3.3:+88562972 MS.gene072984:CDS
AATGATAAGAGTTTGAAGCT+TGG 0.554312 3.3:-88563551 None:intergenic
CTTAAACATAATATGCCGAC+CGG 0.557808 3.3:-88563151 None:intergenic
CATTAGACATTGACCATGAA+CGG 0.557897 3.3:+88563473 MS.gene072984:CDS
TGATAAGAGTTTGAAGCTTG+GGG 0.562294 3.3:-88563549 None:intergenic
TTGATATACATACCACATGT+AGG 0.563352 3.3:-88563200 None:intergenic
TTGTCAAACATGAGATGTAG+TGG 0.563801 3.3:-88563430 None:intergenic
TCAAACTCTTATCATTCATG+AGG 0.568075 3.3:+88563558 MS.gene072984:CDS
GAAGCTTGGGGAAATGTGAA+AGG 0.578728 3.3:-88563537 None:intergenic
ATCAGAGTGAGAGGGATGGA+TGG 0.583194 3.3:-88562845 None:intergenic
ATGTGAAGTACTTTGAGCGA+GGG 0.583803 3.3:-88562970 None:intergenic
TCTACAGGAGTTGGAAACAA+AGG 0.584438 3.3:+88563053 MS.gene072984:CDS
GACATTGACCATGAACGGCT+GGG 0.596928 3.3:+88563478 MS.gene072984:CDS
TATGGAGCAATCAGAGTGAG+AGG 0.597581 3.3:-88562854 None:intergenic
AGTTTGTATCATTCCAAACC+AGG 0.601004 3.3:-88563101 None:intergenic
TTTAAGGTGAACTGACAGGA+AGG 0.602674 3.3:-88562764 None:intergenic
TGGGCACATTCAAATGGAGA+TGG 0.602845 3.3:+88563503 MS.gene072984:CDS
GTAAACAATTTCGACGATGG+CGG 0.608830 3.3:+88563694 MS.gene072984:CDS
ATAAAGTCGTCGTTGAATAG+CGG 0.615262 3.3:-88562815 None:intergenic
AGATGAGATAAAAGGCATGC+TGG 0.617695 3.3:-88563739 None:intergenic
ATGGAGCAATCAGAGTGAGA+GGG 0.622967 3.3:-88562853 None:intergenic
CATGTGAAGTACTTTGAGCG+AGG 0.624165 3.3:-88562971 None:intergenic
CGAGCATCTGCGCCTACATG+TGG 0.633926 3.3:+88563188 MS.gene072984:CDS
AGCAATCAGAGTGAGAGGGA+TGG 0.634531 3.3:-88562849 None:intergenic
GGGTAGATTCTTATCTCGAG+CGG 0.667001 3.3:-88562743 None:intergenic
ACAGTAAACAATTTCGACGA+TGG 0.667484 3.3:+88563691 MS.gene072984:CDS
TTAAGGTGAACTGACAGGAA+GGG 0.677390 3.3:-88562763 None:intergenic
TTAGAGCTAACATTTCCGGT+CGG 0.704519 3.3:+88563136 MS.gene072984:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTTGAATGATAA+TGG + chr3.3:88563951-88563970 MS.gene072984:intron 10.0%
!! ATAAAAAAAATACATAGAAG+TGG - chr3.3:88563629-88563648 None:intergenic 15.0%
!! AATAAATAAAAGTTGACATG+TGG - chr3.3:88563941-88563960 None:intergenic 20.0%
!!! CATAAACAATTTTATTCTTG+GGG - chr3.3:88562795-88562814 None:intergenic 20.0%
!!! GCATAAACAATTTTATTCTT+GGG - chr3.3:88562796-88562815 None:intergenic 20.0%
!!! TTTATTTGAATGATAATGGA+TGG + chr3.3:88563955-88563974 MS.gene072984:intron 20.0%
! AAAAATACATAGAAGTGGAA+TGG - chr3.3:88563624-88563643 None:intergenic 25.0%
! AGTCACATTGTTCAATTTAA+GGG + chr3.3:88563309-88563328 MS.gene072984:intron 25.0%
! TTGTTATCATCTTCAATTTG+AGG - chr3.3:88562924-88562943 None:intergenic 25.0%
!! GGCATAAACAATTTTATTCT+TGG - chr3.3:88562797-88562816 None:intergenic 25.0%
!! TGTATTTGTATCTACTGATT+CGG - chr3.3:88563872-88563891 None:intergenic 25.0%
AAGGATTTAGTGGTAAAGAA+AGG + chr3.3:88563072-88563091 MS.gene072984:CDS 30.0%
ATGTTGTGAGATGAGATAAA+AGG - chr3.3:88563750-88563769 None:intergenic 30.0%
GAAAGAAGACGATTTGATTA+TGG - chr3.3:88562875-88562894 None:intergenic 30.0%
GAGTCACATTGTTCAATTTA+AGG + chr3.3:88563308-88563327 MS.gene072984:intron 30.0%
TCAAACTCTTATCATTCATG+AGG + chr3.3:88563558-88563577 MS.gene072984:CDS 30.0%
TGATACAAACTTATCCAAGT+TGG + chr3.3:88563113-88563132 MS.gene072984:CDS 30.0%
TTGATATACATACCACATGT+AGG - chr3.3:88563203-88563222 None:intergenic 30.0%
! AATGATAAGAGTTTGAAGCT+TGG - chr3.3:88563554-88563573 None:intergenic 30.0%
! ATGATAAGAGTTTGAAGCTT+GGG - chr3.3:88563553-88563572 None:intergenic 30.0%
! ATTGAATCTCACAGTTTTTG+CGG - chr3.3:88563792-88563811 None:intergenic 30.0%
! GACTCAATTCGTAATTTTTC+TGG - chr3.3:88563293-88563312 None:intergenic 30.0%
! TTTGAGGAATGACAAAGTTT+TGG - chr3.3:88562908-88562927 None:intergenic 30.0%
!! ACAAAGTTTTGGTAGTTAGA+GGG - chr3.3:88562897-88562916 None:intergenic 30.0%
!!! GCTATTTCTCTCAATTTTCA+AGG + chr3.3:88563340-88563359 MS.gene072984:intron 30.0%
ACAGTAAACAATTTCGACGA+TGG + chr3.3:88563691-88563710 MS.gene072984:CDS 35.0%
AGTTTGTATCATTCCAAACC+AGG - chr3.3:88563104-88563123 None:intergenic 35.0%
ATAAAGTCGTCGTTGAATAG+CGG - chr3.3:88562818-88562837 None:intergenic 35.0%
CAATGTTTGTGACAAGCTTA+AGG - chr3.3:88563999-88564018 None:intergenic 35.0%
CATTAGACATTGACCATGAA+CGG + chr3.3:88563473-88563492 MS.gene072984:CDS 35.0%
CTTAAACATAATATGCCGAC+CGG - chr3.3:88563154-88563173 None:intergenic 35.0%
GAGATAATTCCTTGATCGTT+TGG - chr3.3:88563900-88563919 None:intergenic 35.0%
GTTGGAAACAAAGGATTTAG+TGG + chr3.3:88563062-88563081 MS.gene072984:CDS 35.0%
GTTTGACAATCTAACTCATC+TGG + chr3.3:88563444-88563463 MS.gene072984:CDS 35.0%
TACAAAACTCCAAACGATCA+AGG + chr3.3:88563888-88563907 MS.gene072984:intron 35.0%
TACATAGAAGTGGAATGGAA+TGG - chr3.3:88563619-88563638 None:intergenic 35.0%
TATCTCACCAAACTTCTATC+TGG + chr3.3:88563021-88563040 MS.gene072984:CDS 35.0%
TTCAACTGTGTATCATTGTC+AGG + chr3.3:88563663-88563682 MS.gene072984:intron 35.0%
TTGGTTAGAGCTAACATTTC+CGG + chr3.3:88563132-88563151 MS.gene072984:CDS 35.0%
TTGTCAAACATGAGATGTAG+TGG - chr3.3:88563433-88563452 None:intergenic 35.0%
! GAAGATCAACGTTTGAAACT+TGG - chr3.3:88562951-88562970 None:intergenic 35.0%
! TGATAAGAGTTTGAAGCTTG+GGG - chr3.3:88563552-88563571 None:intergenic 35.0%
!! AAACATGAGATGTAGTGGAT+AGG - chr3.3:88563428-88563447 None:intergenic 35.0%
!! AACATGAGATGTAGTGGATA+GGG - chr3.3:88563427-88563446 None:intergenic 35.0%
!! AATGTTAGCTCTAACCAACT+TGG - chr3.3:88563130-88563149 None:intergenic 35.0%
!! GAATCTATCACTTTTGCAGA+TGG + chr3.3:88562994-88563013 MS.gene072984:CDS 35.0%
!! GACAAAGTTTTGGTAGTTAG+AGG - chr3.3:88562898-88562917 None:intergenic 35.0%
AGGAATTATCTCTCTGCCAA+AGG + chr3.3:88563908-88563927 MS.gene072984:intron 40.0%
GACATGTGGTTGAATTCCTT+TGG - chr3.3:88563927-88563946 None:intergenic 40.0%
GTAAACAATTTCGACGATGG+CGG + chr3.3:88563694-88563713 MS.gene072984:CDS 40.0%
GTTTCCAACTCCTGTAGATT+AGG - chr3.3:88563051-88563070 None:intergenic 40.0%
TCCTGTCAGTTCACCTTAAA+TGG + chr3.3:88562767-88562786 MS.gene072984:CDS 40.0%
TCTACAGGAGTTGGAAACAA+AGG + chr3.3:88563053-88563072 MS.gene072984:CDS 40.0%
TTAAGGTGAACTGACAGGAA+GGG - chr3.3:88562766-88562785 None:intergenic 40.0%
TTAGAGCTAACATTTCCGGT+CGG + chr3.3:88563136-88563155 MS.gene072984:CDS 40.0%
TTCGGCAATCTGAATTGTCA+TGG - chr3.3:88563854-88563873 None:intergenic 40.0%
! ACCATTTAAGGTGAACTGAC+AGG - chr3.3:88562771-88562790 None:intergenic 40.0%
! AGATGAGATAAAAGGCATGC+TGG - chr3.3:88563742-88563761 None:intergenic 40.0%
! ATGTGAAGTACTTTGAGCGA+GGG - chr3.3:88562973-88562992 None:intergenic 40.0%
! TATTCTTGGGGCACCATTTA+AGG - chr3.3:88562783-88562802 None:intergenic 40.0%
! TTTAAGGTGAACTGACAGGA+AGG - chr3.3:88562767-88562786 None:intergenic 40.0%
AGAAAGGTTGTAGCCTGGTT+TGG + chr3.3:88563088-88563107 MS.gene072984:CDS 45.0%
AGGAGAGCCAGATAGAAGTT+TGG - chr3.3:88563031-88563050 None:intergenic 45.0%
ATGGAGCAATCAGAGTGAGA+GGG - chr3.3:88562856-88562875 None:intergenic 45.0%
CTCTCCTAATCTACAGGAGT+TGG + chr3.3:88563044-88563063 MS.gene072984:CDS 45.0%
GAAGCTTGGGGAAATGTGAA+AGG - chr3.3:88563540-88563559 None:intergenic 45.0%
GGGTAGATTCTTATCTCGAG+CGG - chr3.3:88562746-88562765 None:intergenic 45.0%
GGTAAAGAAAGGTTGTAGCC+TGG + chr3.3:88563083-88563102 MS.gene072984:CDS 45.0%
TATGGAGCAATCAGAGTGAG+AGG - chr3.3:88562857-88562876 None:intergenic 45.0%
TGGGCACATTCAAATGGAGA+TGG + chr3.3:88563503-88563522 MS.gene072984:CDS 45.0%
! CATGTGAAGTACTTTGAGCG+AGG - chr3.3:88562974-88562993 None:intergenic 45.0%
! CTCGCTCAAAGTACTTCACA+TGG + chr3.3:88562972-88562991 MS.gene072984:CDS 45.0%
!! ATCTGGCTCTCCTAATCTAC+AGG + chr3.3:88563038-88563057 MS.gene072984:CDS 45.0%
AGACATTGACCATGAACGGC+TGG + chr3.3:88563477-88563496 MS.gene072984:CDS 50.0%
AGCAATCAGAGTGAGAGGGA+TGG - chr3.3:88562852-88562871 None:intergenic 50.0%
AGTGAGAGGGATGGATGGTT+GGG - chr3.3:88562843-88562862 None:intergenic 50.0%
ATCAGAGTGAGAGGGATGGA+TGG - chr3.3:88562848-88562867 None:intergenic 50.0%
GACATTGACCATGAACGGCT+GGG + chr3.3:88563478-88563497 MS.gene072984:CDS 50.0%
TGGGACTGGGCACATTCAAA+TGG + chr3.3:88563497-88563516 MS.gene072984:CDS 50.0%
TTATCTCGAGCGGCGATGAA+GGG - chr3.3:88562736-88562755 None:intergenic 50.0%
! ACAATTTCGACGATGGCGGT+TGG + chr3.3:88563698-88563717 MS.gene072984:CDS 50.0%
CTTATCTCGAGCGGCGATGA+AGG - chr3.3:88562737-88562756 None:intergenic 55.0%
GAGTGAGAGGGATGGATGGT+TGG - chr3.3:88562844-88562863 None:intergenic 55.0%
! TTTCGACGATGGCGGTTGGA+AGG + chr3.3:88563702-88563721 MS.gene072984:CDS 55.0%
CGAGCATCTGCGCCTACATG+TGG + chr3.3:88563188-88563207 MS.gene072984:CDS 60.0%
GACCATGAACGGCTGGGACT+GGG + chr3.3:88563484-88563503 MS.gene072984:CDS 60.0%
TGACCATGAACGGCTGGGAC+TGG + chr3.3:88563483-88563502 MS.gene072984:CDS 60.0%
TGCCCAGTCCCAGCCGTTCA+TGG - chr3.3:88563489-88563508 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 88562694 88564021 88562694 ID=MS.gene072984
chr3.3 mRNA 88562694 88564021 88562694 ID=MS.gene072984.t1;Parent=MS.gene072984
chr3.3 exon 88562694 88563209 88562694 ID=MS.gene072984.t1.exon1;Parent=MS.gene072984.t1
chr3.3 CDS 88562694 88563209 88562694 ID=cds.MS.gene072984.t1;Parent=MS.gene072984.t1
chr3.3 exon 88563418 88563579 88563418 ID=MS.gene072984.t1.exon2;Parent=MS.gene072984.t1
chr3.3 CDS 88563418 88563579 88563418 ID=cds.MS.gene072984.t1;Parent=MS.gene072984.t1
chr3.3 exon 88563685 88563799 88563685 ID=MS.gene072984.t1.exon3;Parent=MS.gene072984.t1
chr3.3 CDS 88563685 88563799 88563685 ID=cds.MS.gene072984.t1;Parent=MS.gene072984.t1
chr3.3 exon 88563987 88564021 88563987 ID=MS.gene072984.t1.exon4;Parent=MS.gene072984.t1
chr3.3 CDS 88563987 88564021 88563987 ID=cds.MS.gene072984.t1;Parent=MS.gene072984.t1
Gene Sequence

>MS.gene072984

ATGTTCTACTTGGATGAAAAACACTCTCGAGACTCTCTACCCTTCATCGCCGCTCGAGATAAGAATCTACCCTTCCTGTCAGTTCACCTTAAATGGTGCCCCAAGAATAAAATTGTTTATGCCGCTATTCAACGACGACTTTATAACCCAACCATCCATCCCTCTCACTCTGATTGCTCCATAATCAAATCGTCTTCTTTCCCTCTAACTACCAAAACTTTGTCATTCCTCAAATTGAAGATGATAACAATCAGCCAAGTTTCAAACGTTGATCTTCCCTCGCTCAAAGTACTTCACATGGAATCTATCACTTTTGCAGATGGTGAATATCTCACCAAACTTCTATCTGGCTCTCCTAATCTACAGGAGTTGGAAACAAAGGATTTAGTGGTAAAGAAAGGTTGTAGCCTGGTTTGGAATGATACAAACTTATCCAAGTTGGTTAGAGCTAACATTTCCGGTCGGCATATTATGTTTAAGCAACTTTATAACGTCGAGCATCTGCGCCTACATGTGGTATGTATATCAATATATTTATCAAATTTACAAAATACTAGCAAATTACATTAGTCTCTTAAGTTAAGATAATCAATTTACCAGAAAAATTACGAATTGAGTCACATTGTTCAATTTAAGGGAGTAAATTGCTATTTCTCTCAATTTTCAAGGATGAAAATTTTGATTTACTCAACTCATTAATATTATGTCTTTGCAACTCATGCAGACATGTCCCTATCCACTACATCTCATGTTTGACAATCTAACTCATCTGGAGCTTACATTAGACATTGACCATGAACGGCTGGGACTGGGCACATTCAAATGGAGATGGCTGAATATTCTCCTTTCACATTTCCCCAAGCTTCAAACTCTTATCATTCATGAGGTTTTTAATGTCAAGTTTTGTCATGTCTTTTCTTTTCCATTCCATTCCACTTCTATGTATTTTTTTTATATCTTTCAAAACATTTCAACTGTGTATCATTGTCAGGTTGATACAGTAAACAATTTCGACGATGGCGGTTGGAAGGAACTACATACTGTACCAGCATGCCTTTTATCTCATCTCACAACATGCTCACTTAGAAATTACTGCCGCAAAAACTGTGAGATTCAATTTGCAAAATATATCTTGAAGAACTCAAGAGTACTAAACACCATGACAATTCAGATTGCCGAATCAGTAGATACAAATACAAAACTCCAAACGATCAAGGAATTATCTCTCTGCCAAAGGAATTCAACCACATGTCAACTTTTATTTATTTGAATGATAATGGATGGAGCGTGCAGTAGCAGCAGCCTTAAGCTTGTCACAAACATTGTAA
Protein sequence

>MS.gene072984.t1

MFYLDEKHSRDSLPFIAARDKNLPFLSVHLKWCPKNKIVYAAIQRRLYNPTIHPSHSDCSIIKSSSFPLTTKTLSFLKLKMITISQVSNVDLPSLKVLHMESITFADGEYLTKLLSGSPNLQELETKDLVVKKGCSLVWNDTNLSKLVRANISGRHIMFKQLYNVEHLRLHVTCPYPLHLMFDNLTHLELTLDIDHERLGLGTFKWRWLNILLSHFPKLQTLIIHEVDTVNNFDDGGWKELHTVPACLLSHLTTCSLRNYCRKNLAAALSLSQTL