AlfalfaGEDB | MS.gene03752

M. sativa cultivar XinJiangDaYe / MS.gene03752

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF08387.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03752.t1	KEH29904.1	88.5	470	35	1	1	470	1	451	4.30E-213	750.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03752.t1	Q9LX55	24.7	429	234	12	9	400	13	389	2.8e-19	98.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03752.t1	A0A072UJK1	88.5	470	35	1	1	470	1	451	3.1e-213	750.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006692	MS.gene03752	PPI
MS.gene016742	MS.gene03752	PPI
MS.gene016743	MS.gene03752	PPI
MS.gene022909	MS.gene03752	PPI
MS.gene022916	MS.gene03752	PPI
MS.gene03750	MS.gene03752	PPI
MS.gene03752	MS.gene09364	PPI
MS.gene03752	MS.gene002112	PPI
MS.gene03752	MS.gene047136	PPI
MS.gene03752	MS.gene47783	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03752.t1	MTR_4g055990	90.213	470	27	1	1	470	1	451	0.0	848
MS.gene03752.t1	MTR_4g055990	90.213	470	27	1	1	470	1	451	0.0	847
MS.gene03752.t1	MTR_4g055580	81.064	470	64	3	1	470	92	536	0.0	736
MS.gene03752.t1	MTR_4g056070	78.091	461	74	3	1	458	1	437	0.0	709
MS.gene03752.t1	MTR_4g056040	76.170	470	81	3	1	470	1	439	0.0	702
MS.gene03752.t1	MTR_4g056020	75.699	465	52	4	1	465	1	404	0.0	680
MS.gene03752.t1	MTR_4g056030	69.362	470	83	4	1	470	1	409	0.0	622
MS.gene03752.t1	MTR_1g038710	56.723	476	139	7	1	470	11	425	2.35e-162	468
MS.gene03752.t1	MTR_1g090883	54.854	412	126	5	2	411	12	365	1.11e-134	395
MS.gene03752.t1	MTR_7g110920	55.758	330	97	4	155	470	1	295	4.13e-112	335

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03752.t1	AT5G62970	29.299	471	254	20	9	464	2	408	1.01e-24	107
MS.gene03752.t1	AT5G38396	27.837	467	239	17	9	446	2	399	2.38e-23	103
MS.gene03752.t1	AT3G59160	26.761	426	231	16	9	401	13	390	1.07e-22	101
MS.gene03752.t1	AT4G26340	27.331	472	241	21	9	468	2	383	1.51e-22	100
MS.gene03752.t1	AT4G10400	25.431	464	251	14	9	468	2	374	5.85e-22	98.6
MS.gene03752.t1	AT4G10400	25.431	464	251	14	9	468	2	374	5.85e-22	98.6
MS.gene03752.t1	AT4G10400	25.431	464	251	14	9	468	2	374	5.85e-22	98.6
MS.gene03752.t1	AT4G00315	26.971	482	251	19	9	468	2	404	6.56e-22	98.6
MS.gene03752.t1	AT3G59190	27.294	425	215	13	9	404	12	371	2.32e-21	96.3
MS.gene03752.t1	AT5G56380	26.681	476	241	17	9	460	2	393	2.39e-21	97.1

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Find 99 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGTTCCTCCAAATG+TGG	0.603065	4.3:-45102067	None:intergenic
AAAGTGAAGGTTGGGAATCT+TGG	0.470105	4.3:-45101474	None:intergenic
AAATATCTGAGAATTGCAGT+TGG	0.586019	4.3:+45102562	MS.gene03752:CDS
AAATTCAAATGTAATGAGAC+TGG	0.466724	4.3:-45103058	None:intergenic
AACATAGTTGACCCAATATT+TGG	0.181738	4.3:-45104243	None:intergenic
AACTCAGGGTCTGAAATTTC+TGG	0.368291	4.3:-45101503	None:intergenic
AAGAGCAGCTTCATCGAGAT+TGG	0.416322	4.3:-45102275	None:intergenic
AAGGATCTTGCAATTGCGGT+TGG	0.485603	4.3:+45102624	MS.gene03752:CDS
AAGTAGGCATATATAACAAA+AGG	0.493857	4.3:-45102147	None:intergenic
AAGTGAAAAGAGGTATTGAT+CGG	0.603172	4.3:-45102109	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATCTGAGAATTGCAGT+TGG	+	chr4.3:45102562-45102581	MS.gene03752:CDS	30.0%
AACATAAGAAGCTGAAAATC+TGG	+	chr4.3:45102709-45102728	MS.gene03752:intron	30.0%
AACATAGTTGACCCAATATT+TGG	-	chr4.3:45104246-45104265	None:intergenic	30.0%
AAGAGAAGATGAAAGTTCTA+TGG	-	chr4.3:45103394-45103413	None:intergenic	30.0%
AATGAGCATATCCATAATGA+AGG	+	chr4.3:45104082-45104101	MS.gene03752:intron	30.0%
ACTAATACTTGACAGTAAGA+TGG	+	chr4.3:45101646-45101665	MS.gene03752:CDS	30.0%
AGATGAAGAATCTTTAGTGA+CGG	-	chr4.3:45101974-45101993	None:intergenic	30.0%
AGTAGAAAAAAGTTTACGCA+AGG	+	chr4.3:45103191-45103210	MS.gene03752:intron	30.0%
ATATGAAGAACTTCAAGTGA+CGG	-	chr4.3:45102208-45102227	None:intergenic	30.0%
ATATTAGTATTACCACAGTC+TGG	-	chr4.3:45103836-45103855	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	45101338	45104326	45101338	ID=MS.gene03752
chr4.3	mRNA	45101338	45104326	45101338	ID=MS.gene03752.t1;Parent=MS.gene03752
chr4.3	exon	45101338	45102393	45101338	ID=MS.gene03752.t1.exon1;Parent=MS.gene03752.t1
chr4.3	CDS	45101338	45102393	45101338	ID=cds.MS.gene03752.t1;Parent=MS.gene03752.t1
chr4.3	exon	45102489	45102656	45102489	ID=MS.gene03752.t1.exon2;Parent=MS.gene03752.t1
chr4.3	CDS	45102489	45102656	45102489	ID=cds.MS.gene03752.t1;Parent=MS.gene03752.t1
chr4.3	exon	45102973	45103141	45102973	ID=MS.gene03752.t1.exon3;Parent=MS.gene03752.t1
chr4.3	CDS	45102973	45103141	45102973	ID=cds.MS.gene03752.t1;Parent=MS.gene03752.t1
chr4.3	exon	45104184	45104326	45104184	ID=MS.gene03752.t1.exon4;Parent=MS.gene03752.t1
chr4.3	CDS	45104184	45104326	45104184	ID=cds.MS.gene03752.t1;Parent=MS.gene03752.t1

Gene Sequence

>MS.gene03752

ATGGCGTGCTCTGATGAAGAACATGATCGATTAAGCAATCTCTCAGACGATTTGATTTGTCATATTTGTTCTTTCCTATCAACAAAAGAGTCTTATAGAACATGTGTTCTATCCAAAAGATGGGAGTCGATCTGCACCAAGATTCCCAACCTTCACTTTCATTTACCAGAAATTTCAGACCCTGAGTTGTCCAAAGAAGAATTCCAATCTTTAAATCTTGCTGTCCTAAGACGCTCCGAGAATATAGCCAAAGAAGATACCAATTCTTTACAGCTTGCTTTCCAAAGACGCTCCGAGAATATAGTCAAACTAATACTTGACAGTAAGATGGGCTGCCAGCCACATGATGTACACTTGTGGGTTTCAAAGGCATTTGTAAATTTTGCTCTCCTAAGACGCACCGAAAATATAAGAAAACTAAGGCTTGATAGCGAAAAAGGCTGCCAGTCACATGATGTACACATGTGGGTTTCAAAGGCATTAGATCTCAAGGTCCAGGAACTTGACTTGGATCTGTTTCTCCATGAAAAAGTTTTATTGCCGCTCCAGCTTTCCACGTGTGAGTCACTCGTGGTCTTAAAATTGCGGGGCAGAATTCAACCAACACTCAATTCTTCTCTTCATGTATATTTACCGTCACTAAAGATTCTTCATCTCCGTGAAACTGTGGCGTATTCTATGTTTGATGATGGTAAAGAGTATGATCTCAATAATTTTCTATCTGGTTGTCCACATTTGGAGGAACTTCTTTTACATGAGACCTTTGCATTACCGATCAATACCTCTTTTCACTTATTGAAGAGATTATTCCTTTTGTTATATATGCCTACTTCTTCTATTAAGTGTTGTCCACTACAAATTAATGCCCCGTCACTTGAAGTTCTTCATATAGCTGATATTTCATTGACTCCTAGAAAATATGACTTCAGAAACTTGTCCAATCTCGATGAAGCTGCTCTTTGCATTTGCAAGCGTCCGGATTTTAACAATTTGTATACACTCTTGAAAGGGCTTTCTAATGTTAAAACATTGGCTCTCGGTTCCAAAACTTTTCATGTAAGTTTCATAAATATTTTTCTTTTTTAATTACAAGTTCCATATTTAGTCTCCCATATGCAATTCTATTCTCATTTTATGATTTTGTTATGCAGTTTCTCAGCATGGAGGACAAATTTGACAGCTTGCATCTTCTCACTTTTCACAATTTATTATTTTTAACCGTTGAAATATCTGAGAATTGCAGTTGGAATATGCTCATCAGCTTTCTACAGAATGCTCCAAAACTTAAGGATCTTGCAATTGCGGTTGGAATTCAGTGTGTATGAAGTTTTTTTAACTATATTTGCACAATATATTTTTTTTAAAAGATAAAACATAAGAAGCTGAAAATCTGGCACAAGAAGAGCAAAGAACTAGTAAAAGATACATGGAGTTTGCAAATAAAACCGTTAAACGAATTAATTAATTCAAAACAATCTATATCTGATCTATATTTGTGTAGATTTTCTAGCAATTTAACCTTCTTTTAAACCATTTTACTTACAATTTTATCTTTATTTTCTTAATAATGTAATTGAAACTATATGCTATATATCAGTTGGAAAATACAAATGTTAATTTTTGGTTTACATGCAGGGAAAATTTGAAATCAATTCCCGGAGAGAGGAGGTTGGAAACTCTAGATGGGTGGAGCCATCAGTAACTCCGGCATGTCTTACAACCAGTCTCATTACATTTGAATTTAAAGGAATTCAAAACATTAAAACTGAGTTGGACTTTACGCGATATATTGTAAGTCACTCAAGTAAGTTACAGAAGGTAAAGATTTTCACACTCAGTTCAAAGAAAAGAAGAGTAGAAAAAAGTTTACGCAAGGGGTCAAAGAAATCCTCCTTACTAGTATGGGTACGAATTTTACACACTTTCTTTTCTTCCATACAGAGTTTATATACTTTCTGTTTTCTTTTCTTCCATACAGAGTTTATATACTTTCTGTTTTAATGAAAAGAGTTGGTAGTATGTTAATATTTGTTGGTAGGATGTTGTGGGGGTGCCATAGAACTTTCATCTTCTCTTATTTTTCTAGACATTAATTCCGACCATCAACACAGCTTTATGTCTTGAATTTATATATATACAATTACATTCGTGGTTGAGAATAAGACTGTTTTTGTTAAAATAAATAAATTATATCCTCTCAAATTTTTTAATTACATTAATTTTTTTTTATCTTTATACTAATGATTTTATCATTTATGTTTATAGTCTTAAAATTAATTATTCAATATTTGTTACAGGATATTAATTCAATTGAAGATCATTTGGATTCCTCCAAGATTTCAATGAAGACCACTCAACCCTCTTAATCTAGCTATCAAAACTTATATTGGTTTGTTGCATAGAATTCTCTAATGATGAAGAACAAGTTAGATGTTCGATATAAAACCTGTTTTTTGTTCTTCATTCATCTGATAAGTACCAGCAGTACAAGTCAGCCAGACTGTGGTAATACTAATATATTAAAAGCGTTTTGCAAAATCAGTTTTTTACTGTTATCCAATATGAACTATTGATTTTAAATCGAAATTGTCCTACATAAGACTTGCTTGTAAATGTTCAATCTTGTTCTTCTATATTTGTCAAGAGTATATAATTTCATCTACTTTATATTGATACAGCTCTTTTTTGAGCTGTTCTTGCCTAATAAATAAATTGAAGTCATCAAAGCTTAGTGAGTGAGTTTTAATGAGCATATCCATAATGAAGGAGTGTTATATTGCAATGTGAAGTTGATTGGAATCGGTAAGCATACATGATCAAATTGTATGCTCTAACTGCTTGTGCAGCTATAGTCAGACACGTTGACTCGATAATGACTGCTTGTGTTGTGTGTGCTTTAGCATATCCAAATATTGGGTCAACTATGTTTGACCTTGAATCAATTAAGCTGCAAGCTCCTACTGCAGAGTACAATCCCCAGGCATGTTAG

Protein sequence

>MS.gene03752.t1

MACSDEEHDRLSNLSDDLICHICSFLSTKESYRTCVLSKRWESICTKIPNLHFHLPEISDPELSKEEFQSLNLAVLRRSENIAKEDTNSLQLAFQRRSENIVKLILDSKMGCQPHDVHLWVSKAFVNFALLRRTENIRKLRLDSEKGCQSHDVHMWVSKALDLKVQELDLDLFLHEKVLLPLQLSTCESLVVLKLRGRIQPTLNSSLHVYLPSLKILHLRETVAYSMFDDGKEYDLNNFLSGCPHLEELLLHETFALPINTSFHLLKRLFLLLYMPTSSIKCCPLQINAPSLEVLHIADISLTPRKYDFRNLSNLDEAALCICKRPDFNNLYTLLKGLSNVKTLALGSKTFHFLSMEDKFDSLHLLTFHNLLFLTVEISENCSWNMLISFLQNAPKLKDLAIAVGIQCGKFEINSRREEVGNSRWVEPSVTPACLTTSLITFEFKGIQNIKTELDFTRYIVSHSTIVRHVDSIMTACVVCALAYPNIGSTMFDLESIKLQAPTAEYNPQAC