Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98598.t1 | KEH29904.1 | 61.6 | 281 | 31 | 3 | 1 | 205 | 63 | 342 | 4.60E-55 | 224.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98598.t1 | A0A396I8L9 | 69.8 | 222 | 49 | 3 | 1 | 205 | 1 | 221 | 1.1e-50 | 209.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98598.t1 | MTR_4g055990 | 55.872 | 281 | 47 | 6 | 1 | 205 | 63 | 342 | 2.31e-84 | 259 |
MS.gene98598.t1 | MTR_4g055990 | 55.872 | 281 | 47 | 6 | 1 | 205 | 63 | 342 | 3.02e-84 | 258 |
MS.gene98598.t1 | MTR_4g055580 | 51.264 | 277 | 59 | 5 | 1 | 202 | 154 | 429 | 5.11e-74 | 234 |
MS.gene98598.t1 | MTR_4g056070 | 51.056 | 284 | 59 | 6 | 1 | 205 | 63 | 345 | 5.44e-74 | 230 |
MS.gene98598.t1 | MTR_4g056040 | 48.496 | 266 | 63 | 4 | 13 | 205 | 71 | 335 | 1.89e-68 | 218 |
MS.gene98598.t1 | MTR_4g056010 | 81.188 | 101 | 14 | 1 | 40 | 140 | 1 | 96 | 2.55e-53 | 166 |
MS.gene98598.t1 | MTR_4g056020 | 46.964 | 247 | 73 | 7 | 6 | 205 | 70 | 305 | 4.16e-51 | 172 |
MS.gene98598.t1 | MTR_4g056020 | 62.667 | 150 | 42 | 4 | 41 | 181 | 69 | 213 | 3.75e-49 | 166 |
MS.gene98598.t1 | MTR_4g056030 | 46.218 | 238 | 54 | 5 | 41 | 205 | 69 | 305 | 2.41e-49 | 167 |
MS.gene98598.t1 | MTR_7g110920 | 47.429 | 175 | 51 | 4 | 71 | 205 | 1 | 174 | 2.67e-36 | 130 |
MS.gene98598.t1 | MTR_1g038710 | 38.934 | 244 | 69 | 8 | 41 | 205 | 79 | 321 | 3.26e-32 | 121 |
MS.gene98598.t1 | MTR_1g090900 | 56.140 | 114 | 42 | 3 | 30 | 140 | 58 | 166 | 1.98e-30 | 111 |
MS.gene98598.t1 | MTR_4g093690 | 50.000 | 150 | 60 | 4 | 42 | 181 | 77 | 221 | 2.99e-30 | 113 |
MS.gene98598.t1 | MTR_1g090883 | 60.000 | 100 | 32 | 2 | 42 | 140 | 80 | 172 | 5.29e-27 | 106 |
MS.gene98598.t1 | MTR_1g090883 | 39.301 | 229 | 99 | 9 | 15 | 205 | 89 | 315 | 1.25e-26 | 105 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 45 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCAAGGTTGATTTCTTCTT+TGG | 0.230881 | 4.2:+49904544 | None:intergenic |
CTATATTCTCGGAGTGTCTT+TGG | 0.288054 | 4.2:+49904519 | None:intergenic |
TAATTCAATTGAAGATCATT+TGG | 0.321337 | 4.2:-49902500 | MS.gene98598:CDS |
TATTAGTTTGCCTATATTCT+CGG | 0.356951 | 4.2:+49904508 | None:intergenic |
GTCACTTGAAGTTCTTCATA+TGG | 0.379927 | 4.2:-49903910 | MS.gene98598:CDS |
GTATACAAATTGTTAAAATC+TGG | 0.385023 | 4.2:+49903804 | None:intergenic |
ACTCGTGGTCTTAAAATTGC+AGG | 0.389689 | 4.2:-49904234 | MS.gene98598:CDS |
GCTTTGATAACTAGATTAAG+AGG | 0.396156 | 4.2:+49902444 | None:intergenic |
CAAAGACACTCCGAGAATAT+AGG | 0.408259 | 4.2:-49904518 | MS.gene98598:CDS |
ACAGATCCAAGTCAAGTTCC+TGG | 0.422138 | 4.2:+49904306 | None:intergenic |
AATGTCAAAACATTGGTTCT+CGG | 0.428144 | 4.2:-49903762 | MS.gene98598:CDS |
AGTGGTCTTCATCGAAATCT+TGG | 0.447825 | 4.2:+49902471 | None:intergenic |
CAAGGTCCAGGAACTTGACT+TGG | 0.457085 | 4.2:-49904312 | MS.gene98598:CDS |
CGGAGTGTCTTTGGAAAGCA+AGG | 0.488050 | 4.2:+49904528 | None:intergenic |
GGCATTAGATCTCAAGGTCC+AGG | 0.496808 | 4.2:-49904324 | MS.gene98598:CDS |
AAAATCTGGACGCTTACAAA+TGG | 0.503163 | 4.2:+49903818 | None:intergenic |
GACGGGGCATTTATTTGTAG+TGG | 0.525310 | 4.2:+49903930 | None:intergenic |
TGTACACATGTGGGTTTCAA+AGG | 0.528762 | 4.2:-49904345 | MS.gene98598:CDS |
TGTACACATGTGGGTTTCAA+AGG | 0.528762 | 4.2:-49904453 | MS.gene98598:CDS |
CCGAAAATATAAGAAAACTA+AGG | 0.538047 | 4.2:-49904400 | MS.gene98598:CDS |
TATGAAGAACTTCAAGTGAC+GGG | 0.538915 | 4.2:+49903913 | None:intergenic |
ACTTTCTAATGTCAAAACAT+TGG | 0.542048 | 4.2:-49903769 | MS.gene98598:CDS |
TTCAAAGGCATTAGATCTCA+AGG | 0.542872 | 4.2:-49904330 | MS.gene98598:CDS |
CTAAGGCTTGATAGCGACAA+AGG | 0.546051 | 4.2:-49904383 | MS.gene98598:CDS |
CTAATACAAGACAGTCAGAT+GGG | 0.583593 | 4.2:-49904491 | MS.gene98598:CDS |
CTTTGATAACTAGATTAAGA+GGG | 0.590875 | 4.2:+49902445 | None:intergenic |
TGAAATGAAGAATTGAGTGT+TGG | 0.595088 | 4.2:+49904200 | None:intergenic |
CTCGTGGTCTTAAAATTGCA+GGG | 0.606982 | 4.2:-49904233 | MS.gene98598:CDS |
GGAAAGCCTAAGCGGCAACA+TGG | 0.619613 | 4.2:+49904268 | None:intergenic |
ATATGAAGAACTTCAAGTGA+CGG | 0.620016 | 4.2:+49903912 | None:intergenic |
AAGAGCAGCTTCATCAAGAG+TGG | 0.626486 | 4.2:+49903842 | None:intergenic |
TTCCACGTGTGAGTCACTCG+TGG | 0.631019 | 4.2:-49904249 | MS.gene98598:CDS |
ACTAATACAAGACAGTCAGA+TGG | 0.637290 | 4.2:-49904492 | MS.gene98598:CDS |
GCCACATGATGTACACATGT+GGG | 0.650684 | 4.2:-49904354 | MS.gene98598:CDS |
GCCACATGATGTACACATGT+GGG | 0.650684 | 4.2:-49904462 | MS.gene98598:CDS |
ACATGTGTACATCATGTGGC+TGG | 0.656362 | 4.2:+49904357 | None:intergenic |
ACATGTGTACATCATGTGGC+TGG | 0.656362 | 4.2:+49904465 | None:intergenic |
ACCCACATGTGTACATCATG+TGG | 0.672342 | 4.2:+49904353 | None:intergenic |
ACCCACATGTGTACATCATG+TGG | 0.672342 | 4.2:+49904461 | None:intergenic |
GACCACGAGTGACTCACACG+TGG | 0.682798 | 4.2:+49904247 | None:intergenic |
AGCCACATGATGTACACATG+TGG | 0.685172 | 4.2:-49904355 | MS.gene98598:CDS |
AGCCACATGATGTACACATG+TGG | 0.685172 | 4.2:-49904463 | MS.gene98598:CDS |
TCACACGTGGAAAGCCTAAG+CGG | 0.701582 | 4.2:+49904260 | None:intergenic |
ATGAAGAACTTCAAGTGACG+GGG | 0.702176 | 4.2:+49903914 | None:intergenic |
ACTAGATTAAGAGGGTCGAG+TGG | 0.705085 | 4.2:+49902453 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCACAATTTATTATATTTAA+CGG | - | chr4.2:49903426-49903445 | MS.gene98598:intron | 10.0% |
!! | AAGTAAACATATATAAACAA+AGG | + | chr4.2:49903040-49903059 | None:intergenic | 15.0% |
!! | ATGTAATTAAAAAATTTGAG+AGG | + | chr4.2:49904400-49904419 | None:intergenic | 15.0% |
!!! | AATTATTCAATATTTGTTAC+AGG | - | chr4.2:49904480-49904499 | MS.gene98598:CDS | 15.0% |
!! | AGAAAAATTGAAATCAATTC+CGG | - | chr4.2:49903843-49903862 | MS.gene98598:CDS | 20.0% |
!! | AGTTTAAAAGAAGGTTAAAT+TGG | + | chr4.2:49903719-49903738 | None:intergenic | 20.0% |
!! | ATATGAAGAATCTTTAATGA+CGG | + | chr4.2:49902843-49902862 | None:intergenic | 20.0% |
!! | CTCATTACATTTGAATTTAA+AGG | - | chr4.2:49903933-49903952 | MS.gene98598:CDS | 20.0% |
!! | GAGTAAAATAGTTTAAAAGA+AGG | + | chr4.2:49903728-49903747 | None:intergenic | 20.0% |
!! | GTATACAAATTGTTAAAATC+TGG | + | chr4.2:49903206-49903225 | None:intergenic | 20.0% |
!! | GTTTAAAAGAAGGTTAAATT+GGG | + | chr4.2:49903718-49903737 | None:intergenic | 20.0% |
!! | TAATTCAATTGAAGATCATT+TGG | - | chr4.2:49904507-49904526 | MS.gene98598:CDS | 20.0% |
!!! | CCTTAGTTTTCTTATATTTT+CGG | + | chr4.2:49902610-49902629 | None:intergenic | 20.0% |
! | AAATTCAAATGTAATGAGAC+TGG | + | chr4.2:49903931-49903950 | None:intergenic | 25.0% |
! | AAGTATTCTATCTTTGATGA+TGG | - | chr4.2:49902876-49902895 | MS.gene98598:intron | 25.0% |
! | ACTTTCTAATGTCAAAACAT+TGG | - | chr4.2:49903238-49903257 | MS.gene98598:intron | 25.0% |
! | CCGAAAATATAAGAAAACTA+AGG | - | chr4.2:49902607-49902626 | MS.gene98598:intron | 25.0% |
! | CTATTTACTATATATCCAGT+TGG | - | chr4.2:49903786-49903805 | MS.gene98598:CDS | 25.0% |
! | GTTGGTATCTTAATATTTGT+TGG | - | chr4.2:49904180-49904199 | MS.gene98598:intron | 25.0% |
!! | GAAAGTATATAAACTCTGTA+TGG | + | chr4.2:49904144-49904163 | None:intergenic | 25.0% |
!! | GATCTCAATAATTTTCTATC+TGG | - | chr4.2:49902909-49902928 | MS.gene98598:intron | 25.0% |
!! | GTATCTTAATATTTGTTGGT+AGG | - | chr4.2:49904184-49904203 | MS.gene98598:intron | 25.0% |
!! | TTTGTGAAGTCATATTTTCT+AGG | + | chr4.2:49903140-49903159 | None:intergenic | 25.0% |
!!! | TATTAGTTTGCCTATATTCT+CGG | + | chr4.2:49902502-49902521 | None:intergenic | 25.0% |
!!! | TCTGTTTTAATGAAAAGAGT+TGG | - | chr4.2:49904162-49904181 | MS.gene98598:intron | 25.0% |
AAATATCTGAGAATTGCAGT+TGG | - | chr4.2:49903452-49903471 | MS.gene98598:intron | 30.0% | |
AGTAGAAAAAAGATTACGCA+AGG | - | chr4.2:49904061-49904080 | MS.gene98598:intron | 30.0% | |
ATATAATAGGCTCAAAAGTC+TGG | - | chr4.2:49903588-49903607 | MS.gene98598:intron | 30.0% | |
ATATGAAGAACTTCAAGTGA+CGG | + | chr4.2:49903098-49903117 | None:intergenic | 30.0% | |
GTAGAAAAAAGATTACGCAA+GGG | - | chr4.2:49904062-49904081 | MS.gene98598:intron | 30.0% | |
TAGAAAAAAGATTACGCAAG+GGG | - | chr4.2:49904063-49904082 | MS.gene98598:intron | 30.0% | |
TAGAATACTTCACAGTTTCA+CGG | + | chr4.2:49902866-49902885 | None:intergenic | 30.0% | |
TCAAAACATTAAAACTGAGC+TGG | - | chr4.2:49903959-49903978 | MS.gene98598:intron | 30.0% | |
TCTCTTCAATAAGTGAAAAG+AGG | + | chr4.2:49903012-49903031 | None:intergenic | 30.0% | |
TGAAATGAAGAATTGAGTGT+TGG | + | chr4.2:49902810-49902829 | None:intergenic | 30.0% | |
TGCATATGAGAGACTAAATA+TGG | + | chr4.2:49903326-49903345 | None:intergenic | 30.0% | |
! | AATGTCTAGAACAATAAGAG+AGG | + | chr4.2:49904239-49904258 | None:intergenic | 30.0% |
! | ACTCTTCTTTTCTTTGAACT+GGG | + | chr4.2:49904044-49904063 | None:intergenic | 30.0% |
! | ATGTCTAGAACAATAAGAGA+GGG | + | chr4.2:49904238-49904257 | None:intergenic | 30.0% |
! | TACTCTTCTTTTCTTTGAAC+TGG | + | chr4.2:49904045-49904064 | None:intergenic | 30.0% |
! | TATCGTTAGAATTTTCCAAC+TGG | + | chr4.2:49903804-49903823 | None:intergenic | 30.0% |
!! | AATGTCAAAACATTGGTTCT+CGG | - | chr4.2:49903245-49903264 | MS.gene98598:intron | 30.0% |
AAAAGAAGTTCCTCCAAATG+TGG | + | chr4.2:49902939-49902958 | None:intergenic | 35.0% | |
AAAATCTGGACGCTTACAAA+TGG | + | chr4.2:49903192-49903211 | None:intergenic | 35.0% | |
ACAGAATGCTCCAAAACTTA+AGG | - | chr4.2:49903495-49903514 | MS.gene98598:intron | 35.0% | |
ACTAATACAAGACAGTCAGA+TGG | - | chr4.2:49902515-49902534 | MS.gene98598:intron | 35.0% | |
ACTTAAGGATCTTGCGATTA+TGG | - | chr4.2:49903510-49903529 | MS.gene98598:intron | 35.0% | |
CTAATACAAGACAGTCAGAT+GGG | - | chr4.2:49902516-49902535 | MS.gene98598:intron | 35.0% | |
GACATATTAAGCTGTGTTGA+TGG | + | chr4.2:49904270-49904289 | None:intergenic | 35.0% | |
GTCACTTGAAGTTCTTCATA+TGG | - | chr4.2:49903097-49903116 | MS.gene98598:intron | 35.0% | |
TATGAAGAACTTCAAGTGAC+GGG | + | chr4.2:49903097-49903116 | None:intergenic | 35.0% | |
TCACTCAAGTAAGTTACAGA+AGG | - | chr4.2:49904004-49904023 | MS.gene98598:intron | 35.0% | |
TGAAATCAATTCCGGAAGAA+AGG | - | chr4.2:49903851-49903870 | MS.gene98598:CDS | 35.0% | |
! | AGCAAGGTTGATTTCTTCTT+TGG | + | chr4.2:49902466-49902485 | None:intergenic | 35.0% |
! | ATCGCAAGATCCTTAAGTTT+TGG | + | chr4.2:49903508-49903527 | None:intergenic | 35.0% |
! | ATTTGTTGGTAGGATGTTGT+GGG | - | chr4.2:49904194-49904213 | MS.gene98598:intron | 35.0% |
! | TATTTGTTGGTAGGATGTTG+TGG | - | chr4.2:49904193-49904212 | MS.gene98598:intron | 35.0% |
!! | AAGTGAAAAGAGGTGTTGAT+CGG | + | chr4.2:49903002-49903021 | None:intergenic | 35.0% |
!! | TATTAAGCTGTGTTGATGGT+CGG | + | chr4.2:49904266-49904285 | None:intergenic | 35.0% |
!! | TTATATTTTCGGTGCGTCTT+AGG | + | chr4.2:49902599-49902618 | None:intergenic | 35.0% |
!! | TTCAAAGGCATTAGATCTCA+AGG | - | chr4.2:49902677-49902696 | MS.gene98598:intron | 35.0% |
AAGACTTGGCGAAAGATACA+TGG | - | chr4.2:49903624-49903643 | MS.gene98598:intron | 40.0% | |
AATCAATTCCGGAAGAAAGG+AGG | - | chr4.2:49903854-49903873 | MS.gene98598:CDS | 40.0% | |
AGTGGTCTTCATCGAAATCT+TGG | + | chr4.2:49904539-49904558 | None:intergenic | 40.0% | |
ATGAAGAACTTCAAGTGACG+GGG | + | chr4.2:49903096-49903115 | None:intergenic | 40.0% | |
CAAAGACACTCCGAGAATAT+AGG | - | chr4.2:49902489-49902508 | MS.gene98598:CDS | 40.0% | |
CACACACACAATTACATTCG+TGG | - | chr4.2:49904333-49904352 | MS.gene98598:CDS | 40.0% | |
TCTATCTGGTTGTCCACATT+TGG | - | chr4.2:49902923-49902942 | MS.gene98598:intron | 40.0% | |
TGCAGTTGGAATATACTCGT+CGG | - | chr4.2:49903466-49903485 | MS.gene98598:intron | 40.0% | |
TGTACACATGTGGGTTTCAA+AGG | - | chr4.2:49902554-49902573 | MS.gene98598:intron | 40.0% | |
TGTTATGCAGTTTCTCAGCT+TGG | - | chr4.2:49903369-49903388 | MS.gene98598:intron | 40.0% | |
! | AAAAAACCATGTTGCCGCTT+AGG | - | chr4.2:49902733-49902752 | MS.gene98598:intron | 40.0% |
! | ACTCGTGGTCTTAAAATTGC+AGG | - | chr4.2:49902773-49902792 | MS.gene98598:intron | 40.0% |
! | CTATATTCTCGGAGTGTCTT+TGG | + | chr4.2:49902491-49902510 | None:intergenic | 40.0% |
! | CTCGTGGTCTTAAAATTGCA+GGG | - | chr4.2:49902774-49902793 | MS.gene98598:intron | 40.0% |
! | TTTGTTGGTAGGATGTTGTG+GGG | - | chr4.2:49904195-49904214 | MS.gene98598:intron | 40.0% |
!! | GGTAATGCAAAGGTGTTGAT+CGG | + | chr4.2:49902981-49903000 | None:intergenic | 40.0% |
!!! | GCGGCAACATGGTTTTTTTA+TGG | + | chr4.2:49902731-49902750 | None:intergenic | 40.0% |
AAGAGCAGCTTCATCAAGAG+TGG | + | chr4.2:49903168-49903187 | None:intergenic | 45.0% | |
AATTCCGGAAGAAAGGAGGT+TGG | - | chr4.2:49903858-49903877 | MS.gene98598:CDS | 45.0% | |
ACAGATCCAAGTCAAGTTCC+TGG | + | chr4.2:49902704-49902723 | None:intergenic | 45.0% | |
ACATGTGTACATCATGTGGC+TGG | + | chr4.2:49902545-49902564 | None:intergenic | 45.0% | |
ACCCACATGTGTACATCATG+TGG | + | chr4.2:49902549-49902568 | None:intergenic | 45.0% | |
ACTTCGTACCCATACTAGTG+CGG | + | chr4.2:49904102-49904121 | None:intergenic | 45.0% | |
AGAAATCCTCCGCACTAGTA+TGG | - | chr4.2:49904090-49904109 | MS.gene98598:intron | 45.0% | |
AGCCACATGATGTACACATG+TGG | - | chr4.2:49902544-49902563 | MS.gene98598:intron | 45.0% | |
AGGAGGTTGGAAACTTGAGT+TGG | - | chr4.2:49903871-49903890 | MS.gene98598:CDS | 45.0% | |
ATCTGGTTGTCCACATTTGG+AGG | - | chr4.2:49902926-49902945 | MS.gene98598:intron | 45.0% | |
GAAATCCTCCGCACTAGTAT+GGG | - | chr4.2:49904091-49904110 | MS.gene98598:intron | 45.0% | |
GCACAAGAAGAGCAAAGACT+TGG | - | chr4.2:49903610-49903629 | MS.gene98598:intron | 45.0% | |
GCCACATGATGTACACATGT+GGG | - | chr4.2:49902545-49902564 | MS.gene98598:intron | 45.0% | |
GGAGGTTGGAAACTTGAGTT+GGG | - | chr4.2:49903872-49903891 | MS.gene98598:CDS | 45.0% | |
GTTTCCAACCTCCTTTCTTC+CGG | + | chr4.2:49903865-49903884 | None:intergenic | 45.0% | |
TATGCAGTTTCTCAGCTTGG+AGG | - | chr4.2:49903372-49903391 | MS.gene98598:intron | 45.0% | |
! | GACGGGGCATTTATTTGTAG+TGG | + | chr4.2:49903080-49903099 | None:intergenic | 45.0% |
!! | CTAAGGCTTGATAGCGACAA+AGG | - | chr4.2:49902624-49902643 | MS.gene98598:intron | 45.0% |
!! | GGTGTTGATCGGTAATGCAA+AGG | + | chr4.2:49902970-49902989 | None:intergenic | 45.0% |
!!! | TTTTAAAGATAAAATATAAT+AGG | - | chr4.2:49903575-49903594 | MS.gene98598:intron | 5.0% |
AGACATGCCGGAGTTACTGA+TGG | + | chr4.2:49903903-49903922 | None:intergenic | 50.0% | |
AGTAACTCCGGCATGTCTCA+CGG | - | chr4.2:49903905-49903924 | MS.gene98598:CDS | 50.0% | |
CAAGGTCCAGGAACTTGACT+TGG | - | chr4.2:49902695-49902714 | MS.gene98598:intron | 50.0% | |
GGCATTAGATCTCAAGGTCC+AGG | - | chr4.2:49902683-49902702 | MS.gene98598:intron | 50.0% | |
TCACACGTGGAAAGCCTAAG+CGG | + | chr4.2:49902750-49902769 | None:intergenic | 50.0% | |
! | CGGAGTGTCTTTGGAAAGCA+AGG | + | chr4.2:49902482-49902501 | None:intergenic | 50.0% |
!! | GGTTGGAAACTTGAGTTGGG+TGG | - | chr4.2:49903875-49903894 | MS.gene98598:CDS | 50.0% |
GGAAAGCCTAAGCGGCAACA+TGG | + | chr4.2:49902742-49902761 | None:intergenic | 55.0% | |
GGTGGAGCCATCAGTAACTC+CGG | - | chr4.2:49903893-49903912 | MS.gene98598:CDS | 55.0% | |
TCGTACCCATACTAGTGCGG+AGG | + | chr4.2:49904099-49904118 | None:intergenic | 55.0% | |
TTCCACGTGTGAGTCACTCG+TGG | - | chr4.2:49902758-49902777 | MS.gene98598:intron | 55.0% | |
! | GTTGGTAGGATGTTGTGGGG+TGG | - | chr4.2:49904198-49904217 | MS.gene98598:intron | 55.0% |
GACCACGAGTGACTCACACG+TGG | + | chr4.2:49902763-49902782 | None:intergenic | 60.0% | |
! | AGACTGGCCGTGAGACATGC+CGG | + | chr4.2:49903915-49903934 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 49902459 | 49904570 | 49902459 | ID=MS.gene98598 |
chr4.2 | mRNA | 49902459 | 49904570 | 49902459 | ID=MS.gene98598.t1;Parent=MS.gene98598 |
chr4.2 | exon | 49904199 | 49904570 | 49904199 | ID=MS.gene98598.t1.exon1;Parent=MS.gene98598.t1 |
chr4.2 | CDS | 49904199 | 49904570 | 49904199 | ID=cds.MS.gene98598.t1;Parent=MS.gene98598.t1 |
chr4.2 | exon | 49903746 | 49903958 | 49903746 | ID=MS.gene98598.t1.exon2;Parent=MS.gene98598.t1 |
chr4.2 | CDS | 49903746 | 49903958 | 49903746 | ID=cds.MS.gene98598.t1;Parent=MS.gene98598.t1 |
chr4.2 | exon | 49902459 | 49902527 | 49902459 | ID=MS.gene98598.t1.exon3;Parent=MS.gene98598.t1 |
chr4.2 | CDS | 49902459 | 49902527 | 49902459 | ID=cds.MS.gene98598.t1;Parent=MS.gene98598.t1 |
Gene Sequence |
Protein sequence |