AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26444

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26444.t1 MTR_4g056040 62.661 233 64 6 142 369 253 467 2.05e-80 255
MS.gene26444.t1 MTR_4g056040 42.122 311 110 8 11 278 1 284 4.61e-54 186
MS.gene26444.t1 MTR_1g038710 63.478 230 61 6 144 369 241 451 2.43e-79 251
MS.gene26444.t1 MTR_1g038710 54.419 215 72 6 1 191 1 213 1.05e-55 189
MS.gene26444.t1 MTR_4g055990 63.158 228 66 6 147 369 265 479 3.78e-79 251
MS.gene26444.t1 MTR_4g055990 47.034 236 61 5 11 196 1 222 1.18e-51 179
MS.gene26444.t1 MTR_4g055990 63.158 228 66 6 147 369 265 479 4.83e-79 251
MS.gene26444.t1 MTR_4g055990 45.783 249 68 6 11 209 1 232 1.24e-51 179
MS.gene26444.t1 MTR_4g056020 61.404 228 65 6 147 369 228 437 1.21e-78 249
MS.gene26444.t1 MTR_4g056020 54.717 212 66 5 11 209 1 195 9.30e-63 207
MS.gene26444.t1 MTR_7g110920 61.207 232 77 9 145 369 95 320 1.41e-78 244
MS.gene26444.t1 MTR_4g056030 51.525 295 113 9 80 369 168 437 2.24e-78 248
MS.gene26444.t1 MTR_4g056030 52.804 214 71 5 11 211 1 197 2.63e-58 196
MS.gene26444.t1 MTR_4g055580 54.962 262 82 7 126 369 321 564 1.37e-71 234
MS.gene26444.t1 MTR_4g055580 41.195 318 109 9 11 278 92 381 2.20e-51 181
MS.gene26444.t1 MTR_4g056070 54.717 212 74 5 122 329 243 436 1.07e-59 199
MS.gene26444.t1 MTR_4g056070 44.664 253 70 6 11 210 1 236 1.12e-49 172
MS.gene26444.t1 MTR_4g056020 64.331 157 39 3 214 369 1 141 4.00e-58 186
MS.gene26444.t1 MTR_1g090883 55.026 189 71 4 1 177 1 187 1.91e-50 173
MS.gene26444.t1 MTR_1g090883 60.156 128 43 5 144 267 235 358 3.59e-36 135
MS.gene26444.t1 MTR_1g090900 66.667 132 41 2 11 139 1 132 5.85e-49 164
MS.gene26444.t1 MTR_4g093690 52.601 173 64 4 1 158 1 170 4.80e-45 156
MS.gene26444.t1 MTR_1g090890 65.116 86 28 1 284 369 33 116 1.66e-29 110
MS.gene26444.t1 MTR_4g056010 54.737 95 30 2 79 160 2 96 4.05e-23 92.8
MS.gene26444.t1 MTR_1g041245 25.762 361 216 10 19 344 11 354 1.19e-20 92.8
MS.gene26444.t1 MTR_0492s0020 28.612 353 204 12 19 344 86 417 2.18e-20 92.4
MS.gene26444.t1 MTR_0543s0010 28.612 353 204 12 19 344 86 417 2.24e-20 92.4
MS.gene26444.t1 MTR_3g108560 28.852 357 209 12 16 344 17 356 9.90e-19 87.0
MS.gene26444.t1 MTR_7g032380 24.713 348 206 11 19 344 11 324 5.21e-18 84.7
MS.gene26444.t1 MTR_7g033990 25.581 387 209 14 19 358 11 365 7.02e-18 84.7
MS.gene26444.t1 MTR_7g033915 25.556 360 225 11 19 358 11 347 8.00e-18 84.3
MS.gene26444.t1 MTR_7g034115 26.462 359 213 14 19 344 11 351 1.01e-16 81.3
MS.gene26444.t1 MTR_2g005990 23.573 403 232 11 19 365 6 388 1.50e-16 80.9
MS.gene26444.t1 MTR_7g056433 25.606 371 211 13 16 344 9 356 5.58e-16 79.0
MS.gene26444.t1 MTR_3g082890 24.868 378 218 13 16 344 94 454 8.43e-16 79.0
MS.gene26444.t1 MTR_7g098510 26.984 378 187 16 19 344 18 358 1.21e-15 78.2
MS.gene26444.t1 MTR_7g110910 72.917 48 13 0 1 48 148 195 3.30e-15 73.9
MS.gene26444.t1 MTR_3g107100 26.440 382 201 15 16 347 8 359 7.64e-15 75.9
MS.gene26444.t1 MTR_1g053025 26.303 403 219 16 19 365 2 382 8.40e-15 75.5
MS.gene26444.t1 MTR_7g032370 25.220 341 208 12 30 344 1 320 2.34e-14 73.9
MS.gene26444.t1 MTR_1g085120 24.936 393 233 13 1 356 83 450 4.50e-14 73.6
MS.gene26444.t1 MTR_1g085120 24.936 393 233 13 1 356 158 525 5.79e-14 73.6
MS.gene26444.t1 MTR_5g012840 25.231 325 178 11 44 349 14 292 8.02e-14 72.0
MS.gene26444.t1 MTR_7g098480 25.974 385 222 12 19 365 18 377 3.87e-13 70.9
MS.gene26444.t1 MTR_7g056420 25.905 359 208 12 19 349 9 337 6.16e-13 70.9
MS.gene26444.t1 MTR_7g056430 25.824 364 212 12 14 349 4 337 6.63e-13 70.9
MS.gene26444.t1 MTR_8g085430 22.941 340 194 11 19 344 11 296 8.22e-13 68.9
MS.gene26444.t1 MTR_4g039440 25.000 384 189 14 19 344 34 376 1.78e-12 68.6
MS.gene26444.t1 MTR_3g099830 25.000 388 218 16 19 365 12 367 3.62e-12 67.4
MS.gene26444.t1 MTR_7g055943 25.798 376 214 13 13 344 34 388 6.69e-12 67.0
MS.gene26444.t1 MTR_6g040270 24.444 360 212 12 21 344 10 345 1.05e-11 66.2
MS.gene26444.t1 MTR_7g034110 23.565 331 187 11 19 329 11 295 1.32e-11 65.5
MS.gene26444.t1 MTR_7g033945 33.333 162 83 5 19 158 11 169 2.17e-11 62.8
MS.gene26444.t1 MTR_6g011460 24.798 371 203 12 19 344 46 385 2.24e-11 65.1
MS.gene26444.t1 MTR_5g045170 22.785 395 190 14 21 348 16 362 3.13e-11 64.7
MS.gene26444.t1 MTR_3g108560 35.484 155 87 5 16 160 17 168 3.19e-11 64.3
MS.gene26444.t1 MTR_3g107160 24.812 399 224 17 16 366 7 377 4.74e-11 63.9
MS.gene26444.t1 MTR_5g073420 24.932 365 214 12 19 349 11 349 4.74e-11 63.9
MS.gene26444.t1 MTR_1089s0010 25.714 385 205 14 19 356 8 358 6.74e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26444.t1 AT3G59190 24.890 454 208 16 19 345 12 459 6.57e-17 82.4
MS.gene26444.t1 AT3G59190 25.469 373 161 11 19 277 12 381 2.73e-15 77.0
MS.gene26444.t1 AT3G59000 24.189 339 186 9 19 346 2 280 3.12e-13 70.5
MS.gene26444.t1 AT4G13960 31.818 154 94 3 19 162 2 154 6.01e-11 63.9
MS.gene26444.t1 AT4G13960 31.818 154 94 3 19 162 2 154 6.01e-11 63.9

Find 66 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTGCATTTGAATTTAA+AGG 0.118708 4.1:+23723708 MS.gene26444:CDS
TAAGAGATGGGGCATTAATT+TGG 0.263787 4.1:-23722958 None:intergenic
AGAAATCTTCGATACTAGTA+TGG 0.269834 4.1:+23723862 MS.gene26444:CDS
CACTGTTTCGAGATTCTTGC+CGG 0.280930 4.1:-23722261 None:intergenic
TTCTACTACTTTCTCTGAAT+CGG 0.286108 4.1:-23723817 None:intergenic
TATTGCCGCTTAAGCTTTCC+AGG 0.287296 4.1:+23722648 MS.gene26444:CDS
ATGGCGAGATCCTTGAGTTT+TGG 0.295775 4.1:-23723390 None:intergenic
ATGGCGAGATCCTTGAGTTT+TGG 0.295775 4.1:-23723432 None:intergenic
ATGTACAAATTGAATTTCTT+TGG 0.307589 4.1:-23722471 None:intergenic
AAGAGCAGCTTCATCAATAT+TGG 0.323876 4.1:-23723047 None:intergenic
GATTATGAAACTTACATGTT+TGG 0.324865 4.1:-23723146 None:intergenic
GTTTACAACCTCATATGTTA+TGG 0.336392 4.1:-23723020 None:intergenic
TATAAGATTCTTCTGTTGAT+AGG 0.352003 4.1:-23722355 None:intergenic
GGAAAGCTTAAGCGGCAATA+AGG 0.373735 4.1:-23722645 None:intergenic
TCAAAGACAAGTCAAGTTCT+TGG 0.384504 4.1:-23722607 None:intergenic
CTAAGTATCGATAGTGTTCA+AGG 0.391147 4.1:+23722530 MS.gene26444:CDS
TCTTTGGACGACGCAGGGTC+TGG 0.400128 4.1:-23722455 None:intergenic
TCTACTACTTTCTCTGAATC+GGG 0.403758 4.1:-23723816 None:intergenic
CATACTCCAATTGCAATTCT+CGG 0.424606 4.1:-23723343 None:intergenic
AAAATCAAGGTCGAGGATCT+TGG 0.427232 4.1:-23722417 None:intergenic
TTTACAACCTCATATGTTAT+GGG 0.428309 4.1:-23723019 None:intergenic
GACGCAGGGTCTGGAATCTC+TGG 0.459313 4.1:-23722446 None:intergenic
CAGAAAGAACTTTAAGAGAT+GGG 0.479739 4.1:-23722970 None:intergenic
AAATATCCGAGAATTGCAAT+TGG 0.484292 4.1:+23723337 MS.gene26444:CDS
TCACAATTTATTATCTCTAT+CGG 0.488933 4.1:+23723311 MS.gene26444:CDS
ACAGAAAGAACTTTAAGAGA+TGG 0.499128 4.1:-23722971 None:intergenic
GACTACTCCCATAACATATG+AGG 0.502185 4.1:+23723012 MS.gene26444:CDS
AGGAGGTTGTAAACTCGAGT+TGG 0.522177 4.1:+23723646 MS.gene26444:CDS
TCTCTGGTAATTCAAAATCA+AGG 0.522337 4.1:-23722430 None:intergenic
TATGTTATGGGAGTAGTCAA+TGG 0.525460 4.1:-23723007 None:intergenic
GATGGGGCATTAATTTGGAC+TGG 0.526954 4.1:-23722953 None:intergenic
AGATTCTTCTGTTGATAGGA+AGG 0.529657 4.1:-23722351 None:intergenic
TTTCTTCATATGGAGGAAGC+CGG 0.530262 4.1:+23722242 None:intergenic
TGAATTTCTTTGGACGACGC+AGG 0.534570 4.1:-23722461 None:intergenic
TATATATTATAAATCAATCA+AGG 0.537921 4.1:+23723766 MS.gene26444:CDS
AGTAGAAAGAAGTTTACTCA+AGG 0.539582 4.1:+23723833 MS.gene26444:CDS
GGAGGTTGTAAACTCGAGTT+GGG 0.539897 4.1:+23723647 MS.gene26444:CDS
GAATTTCTTTGGACGACGCA+GGG 0.539953 4.1:-23722460 None:intergenic
AACCACAGGATGCACACACA+TGG 0.540159 4.1:+23722558 MS.gene26444:CDS
TTCAAAGGCATTAGATCTCA+AGG 0.542872 4.1:+23722583 MS.gene26444:CDS
GTAGAAAGAAGTTTACTCAA+GGG 0.543204 4.1:+23723834 MS.gene26444:CDS
AAACATCATACACACCTCAA+TGG 0.550288 4.1:-23723451 None:intergenic
TGCACACACATGGGTTTCAA+AGG 0.552909 4.1:+23722568 MS.gene26444:CDS
ACATAATGCTCCAAAACTCA+AGG 0.554768 4.1:+23723380 MS.gene26444:CDS
GTAATTCAAAATCAAGGTCG+AGG 0.555863 4.1:-23722424 None:intergenic
ACTCAAGGATCTCGCCATTG+AGG 0.556897 4.1:+23723395 MS.gene26444:CDS
ACTCAAGGATCTCGCCATTG+AGG 0.556897 4.1:+23723437 MS.gene26444:CDS
CATGTGTTCTATCAACAAGA+TGG 0.568475 4.1:+23722381 MS.gene26444:CDS
TGTTCAAGGCTGTCAACCAC+AGG 0.574584 4.1:+23722544 MS.gene26444:CDS
GAAATCTTCGATACTAGTAT+GGG 0.575214 4.1:+23723863 MS.gene26444:CDS
AGCATTATGTAGAACCTCAA+TGG 0.575521 4.1:-23723409 None:intergenic
GTTGTAAACTCGAGTTGGGT+GGG 0.575780 4.1:+23723651 MS.gene26444:CDS
ACATAATGCTCCAAAACTCA+AGG 0.583158 4.1:+23723422 MS.gene26444:CDS
AATGTCAAATCATTGACTCT+CGG 0.589479 4.1:+23723121 MS.gene26444:CDS
TCACACCTGGAAAGCTTAAG+CGG 0.589517 4.1:-23722653 None:intergenic
AGACTTGTTGAAAGACATGA+TGG 0.601053 4.1:-23723687 None:intergenic
GGTTGTAAACTCGAGTTGGG+TGG 0.608500 4.1:+23723650 MS.gene26444:CDS
TAGAAAGAAGTTTACTCAAG+GGG 0.610799 4.1:+23723835 MS.gene26444:CDS
ACCCATGTGTGTGCATCCTG+TGG 0.612912 4.1:-23722560 None:intergenic
AGAAAGAACTTTAAGAGATG+GGG 0.624862 4.1:-23722969 None:intergenic
TCAATCAAGGAAGTTAGAGA+AGG 0.628063 4.1:+23723779 MS.gene26444:CDS
CATAGGGTTGCATCTAACGT+TGG 0.653512 4.1:+23722929 MS.gene26444:intron
CGGCAAGAATCTCGAAACAG+TGG 0.657960 4.1:+23722262 MS.gene26444:CDS
ACCACAGGATGCACACACAT+GGG 0.658386 4.1:+23722559 MS.gene26444:CDS
AGACATGATGGAGTTACTGA+TGG 0.669795 4.1:-23723675 None:intergenic
GTGTTCTATCAACAAGATGG+AGG 0.688828 4.1:+23722384 MS.gene26444:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTATAAATCAATCA+AGG + chr4.1:23723766-23723785 MS.gene26444:CDS 10.0%
!!! CACTTTTTTCATTAAAAAAA+AGG - chr4.1:23723934-23723953 None:intergenic 15.0%
!! ATGTACAAATTGAATTTCTT+TGG - chr4.1:23722474-23722493 None:intergenic 20.0%
!! TCACAATTTATTATCTCTAT+CGG + chr4.1:23723311-23723330 MS.gene26444:CDS 20.0%
!! TGAAAAAAATTCTCAAAGAA+AGG + chr4.1:23723626-23723645 MS.gene26444:CDS 20.0%
!!! AACTTTTATACATTCATGAA+AGG + chr4.1:23723091-23723110 MS.gene26444:CDS 20.0%
!!! ACCTATCTTTATTTATACAT+AGG + chr4.1:23722912-23722931 MS.gene26444:intron 20.0%
!!! AGGTGTTTTTTCAAAATTAA+AGG - chr4.1:23724076-23724095 None:intergenic 20.0%
!!! ATTTGCACAAATTTTTGAAA+AGG + chr4.1:23723484-23723503 MS.gene26444:intron 20.0%
!!! CCTATCTTTATTTATACATA+GGG + chr4.1:23722913-23722932 MS.gene26444:intron 20.0%
! AAAAAATTCTCAAAGAAAGG+AGG + chr4.1:23723629-23723648 MS.gene26444:CDS 25.0%
! AATGAAAAGAGATTTGCATA+TGG - chr4.1:23723218-23723237 None:intergenic 25.0%
! ATGAAAAGAGATTTGCATAT+GGG - chr4.1:23723217-23723236 None:intergenic 25.0%
! CCCTATGTATAAATAAAGAT+AGG - chr4.1:23722916-23722935 None:intergenic 25.0%
! CTCATTGCATTTGAATTTAA+AGG + chr4.1:23723708-23723727 MS.gene26444:CDS 25.0%
! GAATAAAAAACTTGTCAACA+AGG - chr4.1:23724181-23724200 None:intergenic 25.0%
! GATCTTGATAAATTTCTATC+TGG + chr4.1:23722806-23722825 MS.gene26444:intron 25.0%
! GATTATGAAACTTACATGTT+TGG - chr4.1:23723149-23723168 None:intergenic 25.0%
! TATAAGATTCTTCTGTTGAT+AGG - chr4.1:23722358-23722377 None:intergenic 25.0%
! TATCTGTTAGTATGATGTTA+TGG + chr4.1:23723993-23724012 MS.gene26444:intron 25.0%
! TCAAAACATAAAAACTGAGT+TGG + chr4.1:23723734-23723753 MS.gene26444:CDS 25.0%
! TTTACAACCTCATATGTTAT+GGG - chr4.1:23723022-23723041 None:intergenic 25.0%
!!! CATTTTGTTTTTTTGACAAG+TGG + chr4.1:23723962-23723981 MS.gene26444:intron 25.0%
!!! TTTTGGAGCATTATGTAAAA+AGG - chr4.1:23723376-23723395 None:intergenic 25.0%
AAAAATAATTCCTCCACATG+TGG - chr4.1:23722836-23722855 None:intergenic 30.0%
AAATATCCGAGAATTGCAAT+TGG + chr4.1:23723337-23723356 MS.gene26444:CDS 30.0%
AGAAATCTTCGATACTAGTA+TGG + chr4.1:23723862-23723881 MS.gene26444:CDS 30.0%
AGTAAAAGATACACGAAGTT+TGG + chr4.1:23723556-23723575 MS.gene26444:intron 30.0%
AGTAGAAAGAAGTTTACTCA+AGG + chr4.1:23723833-23723852 MS.gene26444:CDS 30.0%
ATACAAAACTAAGAACTTCG+AGG - chr4.1:23724153-23724172 None:intergenic 30.0%
ATATCTCTTCTCTCTTATTG+AGG + chr4.1:23722882-23722901 MS.gene26444:intron 30.0%
GAAATCTTCGATACTAGTAT+GGG + chr4.1:23723863-23723882 MS.gene26444:CDS 30.0%
GTAGAAAGAAGTTTACTCAA+GGG + chr4.1:23723834-23723853 MS.gene26444:CDS 30.0%
GTTTACAACCTCATATGTTA+TGG - chr4.1:23723023-23723042 None:intergenic 30.0%
TAAAAAACTTGTCAACAAGG+TGG - chr4.1:23724178-23724197 None:intergenic 30.0%
TAAGAGAGAAGAGATATTGA+CGG - chr4.1:23722879-23722898 None:intergenic 30.0%
TAGAAAGAAGTTTACTCAAG+GGG + chr4.1:23723835-23723854 MS.gene26444:CDS 30.0%
TCTCTGGTAATTCAAAATCA+AGG - chr4.1:23722433-23722452 None:intergenic 30.0%
TGCTAACATCGTTAAGTTAA+AGG - chr4.1:23724096-23724115 None:intergenic 30.0%
TTCGAGATGAAGAATCTTTA+GGG - chr4.1:23722744-23722763 None:intergenic 30.0%
TTCTACTACTTTCTCTGAAT+CGG - chr4.1:23723820-23723839 None:intergenic 30.0%
! ACAGAAAGAACTTTAAGAGA+TGG - chr4.1:23722974-23722993 None:intergenic 30.0%
! AGAAAGAACTTTAAGAGATG+GGG - chr4.1:23722972-23722991 None:intergenic 30.0%
! CAGAAAGAACTTTAAGAGAT+GGG - chr4.1:23722973-23722992 None:intergenic 30.0%
!! AATGTCAAATCATTGACTCT+CGG + chr4.1:23723121-23723140 MS.gene26444:CDS 30.0%
!!! TCGAAGTTCTTAGTTTTGTA+TGG + chr4.1:23724152-23724171 MS.gene26444:intron 30.0%
AAACATCATACACACCTCAA+TGG - chr4.1:23723454-23723473 None:intergenic 35.0%
AACGATGTTAGCAATGTTAG+TGG + chr4.1:23724103-23724122 MS.gene26444:intron 35.0%
AAGAGAGAAGAGATATTGAC+GGG - chr4.1:23722878-23722897 None:intergenic 35.0%
AAGAGCAGCTTCATCAATAT+TGG - chr4.1:23723050-23723069 None:intergenic 35.0%
ACATAATGCTCCAAAACTCA+AGG + chr4.1:23723380-23723399 MS.gene26444:CDS 35.0%
ACGATGTTAGCAATGTTAGT+GGG + chr4.1:23724104-23724123 MS.gene26444:intron 35.0%
ACTTCGAGGAAAAAATGTAG+AGG - chr4.1:23724139-23724158 None:intergenic 35.0%
AGCATTATGTAGAACCTCAA+TGG - chr4.1:23723412-23723431 None:intergenic 35.0%
CATACTCCAATTGCAATTCT+CGG - chr4.1:23723346-23723365 None:intergenic 35.0%
CATGTGTTCTATCAACAAGA+TGG + chr4.1:23722381-23722400 MS.gene26444:CDS 35.0%
CTAAAGATTCTTCATCTCGA+AGG + chr4.1:23722743-23722762 MS.gene26444:intron 35.0%
CTTCGAGATGAAGAATCTTT+AGG - chr4.1:23722745-23722764 None:intergenic 35.0%
GTAATTCAAAATCAAGGTCG+AGG - chr4.1:23722427-23722446 None:intergenic 35.0%
GTTAGTATGATGTTATGGAG+TGG + chr4.1:23723998-23724017 MS.gene26444:intron 35.0%
TATGGAGTGGTGATATAACT+TGG + chr4.1:23724011-23724030 MS.gene26444:intron 35.0%
TATGTTATGGGAGTAGTCAA+TGG - chr4.1:23723010-23723029 None:intergenic 35.0%
TCAAAGACAAGTCAAGTTCT+TGG - chr4.1:23722610-23722629 None:intergenic 35.0%
TCAATCAAGGAAGTTAGAGA+AGG + chr4.1:23723779-23723798 MS.gene26444:CDS 35.0%
TCTACTACTTTCTCTGAATC+GGG - chr4.1:23723819-23723838 None:intergenic 35.0%
TGCATATGGGTAGCAAAATA+TGG - chr4.1:23723204-23723223 None:intergenic 35.0%
! AGATGAAGAATCTTTAGGGA+CGG - chr4.1:23722740-23722759 None:intergenic 35.0%
! AGATTCTTCTGTTGATAGGA+AGG - chr4.1:23722354-23722373 None:intergenic 35.0%
! CTTGTGGTCTTAAAATTGTG+CGG + chr4.1:23722680-23722699 MS.gene26444:intron 35.0%
! TAAGAGATGGGGCATTAATT+TGG - chr4.1:23722961-23722980 None:intergenic 35.0%
! TGATATTTTCAGTGCGTCTT+AGG - chr4.1:23722505-23722524 None:intergenic 35.0%
!! AGACTTGTTGAAAGACATGA+TGG - chr4.1:23723690-23723709 None:intergenic 35.0%
!! AGATATTGACGGGTTGTTTA+AGG - chr4.1:23722868-23722887 None:intergenic 35.0%
!! CTAAGTATCGATAGTGTTCA+AGG + chr4.1:23722530-23722549 MS.gene26444:CDS 35.0%
!! TTCAAAGGCATTAGATCTCA+AGG + chr4.1:23722583-23722602 MS.gene26444:CDS 35.0%
AAAATCAAGGTCGAGGATCT+TGG - chr4.1:23722420-23722439 None:intergenic 40.0%
GACTACTCCCATAACATATG+AGG + chr4.1:23723012-23723031 MS.gene26444:CDS 40.0%
GTGTTCTATCAACAAGATGG+AGG + chr4.1:23722384-23722403 MS.gene26444:CDS 40.0%
! AGACATGATGGAGTTACTGA+TGG - chr4.1:23723678-23723697 None:intergenic 40.0%
!!! GCGGCAATAAGGTTTTTTCA+TGG - chr4.1:23722637-23722656 None:intergenic 40.0%
AGGAGGTTGTAAACTCGAGT+TGG + chr4.1:23723646-23723665 MS.gene26444:CDS 45.0%
CACTGTTTCGAGATTCTTGC+CGG - chr4.1:23722264-23722283 None:intergenic 45.0%
CATAGGGTTGCATCTAACGT+TGG + chr4.1:23722929-23722948 MS.gene26444:intron 45.0%
GAATTTCTTTGGACGACGCA+GGG - chr4.1:23722463-23722482 None:intergenic 45.0%
GGAAAGCTTAAGCGGCAATA+AGG - chr4.1:23722648-23722667 None:intergenic 45.0%
GGAGGTTGTAAACTCGAGTT+GGG + chr4.1:23723647-23723666 MS.gene26444:CDS 45.0%
TCACACCTGGAAAGCTTAAG+CGG - chr4.1:23722656-23722675 None:intergenic 45.0%
TCTATCTGGATGTCCACATG+TGG + chr4.1:23722820-23722839 MS.gene26444:intron 45.0%
TGAATTTCTTTGGACGACGC+AGG - chr4.1:23722464-23722483 None:intergenic 45.0%
TGCACACACATGGGTTTCAA+AGG + chr4.1:23722568-23722587 MS.gene26444:CDS 45.0%
! ATGGCGAGATCCTTGAGTTT+TGG - chr4.1:23723393-23723412 None:intergenic 45.0%
! GATGGGGCATTAATTTGGAC+TGG - chr4.1:23722956-23722975 None:intergenic 45.0%
! TATTGCCGCTTAAGCTTTCC+AGG + chr4.1:23722648-23722667 MS.gene26444:CDS 45.0%
!! GTTGTAAACTCGAGTTGGGT+GGG + chr4.1:23723651-23723670 MS.gene26444:CDS 45.0%
AACCACAGGATGCACACACA+TGG + chr4.1:23722558-23722577 MS.gene26444:CDS 50.0%
ACCACAGGATGCACACACAT+GGG + chr4.1:23722559-23722578 MS.gene26444:CDS 50.0%
ACTCAAGGATCTCGCCATTG+AGG + chr4.1:23723395-23723414 MS.gene26444:CDS 50.0%
ATCTGGATGTCCACATGTGG+AGG + chr4.1:23722823-23722842 MS.gene26444:intron 50.0%
CGGCAAGAATCTCGAAACAG+TGG + chr4.1:23722262-23722281 MS.gene26444:CDS 50.0%
TGTTCAAGGCTGTCAACCAC+AGG + chr4.1:23722544-23722563 MS.gene26444:CDS 50.0%
TTCCAGGTGTGAGTCACTTG+TGG + chr4.1:23722664-23722683 MS.gene26444:intron 50.0%
!! GGTTGTAAACTCGAGTTGGG+TGG + chr4.1:23723650-23723669 MS.gene26444:CDS 50.0%
ACCCATGTGTGTGCATCCTG+TGG - chr4.1:23722563-23722582 None:intergenic 55.0%
GACCACAAGTGACTCACACC+TGG - chr4.1:23722669-23722688 None:intergenic 55.0%
TCTTTGGACGACGCAGGGTC+TGG - chr4.1:23722458-23722477 None:intergenic 60.0%
! GACGCAGGGTCTGGAATCTC+TGG - chr4.1:23722449-23722468 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 23722251 23724216 23722251 ID=MS.gene26444
chr4.1 mRNA 23722251 23724216 23722251 ID=MS.gene26444.t1;Parent=MS.gene26444
chr4.1 exon 23722251 23722669 23722251 ID=MS.gene26444.t1.exon1;Parent=MS.gene26444.t1
chr4.1 CDS 23722251 23722669 23722251 ID=cds.MS.gene26444.t1;Parent=MS.gene26444.t1
chr4.1 exon 23722934 23723153 23722934 ID=MS.gene26444.t1.exon2;Parent=MS.gene26444.t1
chr4.1 CDS 23722934 23723153 23722934 ID=cds.MS.gene26444.t1;Parent=MS.gene26444.t1
chr4.1 exon 23723258 23723458 23723258 ID=MS.gene26444.t1.exon3;Parent=MS.gene26444.t1
chr4.1 CDS 23723258 23723458 23723258 ID=cds.MS.gene26444.t1;Parent=MS.gene26444.t1
chr4.1 exon 23723618 23723884 23723618 ID=MS.gene26444.t1.exon4;Parent=MS.gene26444.t1
chr4.1 CDS 23723618 23723884 23723618 ID=cds.MS.gene26444.t1;Parent=MS.gene26444.t1
chr4.1 exon 23724208 23724216 23724208 ID=MS.gene26444.t1.exon5;Parent=MS.gene26444.t1
chr4.1 CDS 23724208 23724216 23724208 ID=cds.MS.gene26444.t1;Parent=MS.gene26444.t1
Gene Sequence

>MS.gene26444

ATGGAGGAAGCCGGCAAGAATCTCGAAACAGTGGCATGCTCTTACGAAGAACATGATCGATTAAGCAATCTCTCAGACGATTTGATTTTGCATATTTTGTCCTTCCTATCAACAGAAGAATCTTATAGAACATGTGTTCTATCAACAAGATGGAGGTTGATCTGCACCAAGATCCTCGACCTTGATTTTGAATTACCAGAGATTCCAGACCCTGCGTCGTCCAAAGAAATTCAATTTGTACATGCTGTTTTCCTAAGACGCACTGAAAATATCAGAAATCTAAGTATCGATAGTGTTCAAGGCTGTCAACCACAGGATGCACACACATGGGTTTCAAAGGCATTAGATCTCAAGGTCCAAGAACTTGACTTGTCTTTGATACTCCATGAAAAAACCTTATTGCCGCTTAAGCTTTCCAGGTGTGAGTCACTTGTGGTCTTAAAATTGTGCGGCAGAATTCAACTAACTTCTTTTGATGTATATTTACCGTCCCTAAAGATTCTTCATCTCGAAGGCACTGTTTTTTATTCTATCTCTGATGATCATATCGAGTATGATCTTGATAAATTTCTATCTGGATGTCCACATGTGGAGGAATTATTTTTATACGACAGCCTTAAACAACCCGTCAATATCTCTTCTCTCTTATTGAGGAGATTACACCTATCTTTATTTATACATAGGGTTGCATCTAACGTTGGTCCAGTCCAAATTAATGCCCCATCTCTTAAAGTTCTTTCTGTTATTGATCATTATCCATTGACTACTCCCATAACATATGAGGTTGTAAACTTCTCCAATATTGATGAAGCTGCTCTTTTCATTAATTATTCATTTAACAACTTTTATACATTCATGAAAGGACTATCTAATGTCAAATCATTGACTCTCGGTTCCAAACATGTAAGTTTCATAATCTTTTTCTTTTCTTTCTTTTTTAATGATAAGTTCCATATTTTGCTACCCATATGCAAATCTCTTTTCATTTTTTTAATTTTCTTTTGCAGTTTCTCAGCATGAAGAACAAACTTGACAATGACAAAGTACTTCTTCTCACTTTTCACAATTTATTATCTCTATCGGTTGAAATATCCGAGAATTGCAATTGGAGTATGCTTGTTACCTTTTTACATAATGCTCCAAAACTCAAGGATCTCGCCATTGAGGTTCTACATAATGCTCCAAAACTCAAGGATCTCGCCATTGAGGTGTGTATGATGTTTTTTTAACTATATTTGCACAAATTTTTGAAAAGGTAAAATATATTAATAAGCTTAAAATCTAGCACAAGAAATGCAAAGATTGAGTAAAAGATACACGAAGTTTGGAAGATTCTAAAGACAATTTTTAATATTGTTTACATGCAGAAAGAAATTGAAAAAAATTCTCAAAGAAAGGAGGTTGTAAACTCGAGTTGGGTGGGACCATCAGTAACTCCATCATGTCTTTCAACAAGTCTCATTGCATTTGAATTTAAAGGAATTCAAAACATAAAAACTGAGTTGGACTTTGCGCTATATATTATAAATCAATCAAGGAAGTTAGAGAAGGTAAAGATTTTCACACCCGATTCAGAGAAAGTAGTAGAAAGAAGTTTACTCAAGGGGTCAAAGAAATCTTCGATACTAGTATGGGTATGAAGTATACACTTTCTTTTTTTCAATACTGAGTTTAATTATACCTTTTTTTTAATGAAAAAAGTGAGTATGTTCATTTTGTTTTTTTGACAAGTGGTATGTTAGTATCTGTTAGTATGATGTTATGGAGTGGTGATATAACTTGGAAAAATTGCATTGATCAGTTACATTAAACAACACAAACACCTTTAATTTTGAAAAAACACCTTTAACTTAACGATGTTAGCAATGTTAGTGGGAAAAACACACCTCTACATTTTTTCCTCGAAGTTCTTAGTTTTGTATGGCCACCTTGTTGACAAGTTTTTTATTCTTGCTAGTTTGTGTAA
Protein sequence

>MS.gene26444.t1

MEEAGKNLETVACSYEEHDRLSNLSDDLILHILSFLSTEESYRTCVLSTRWRLICTKILDLDFELPEIPDPASSKEIQFVHAVFLRRTENIRNLSIDSVQGCQPQDAHTWVSKALDLKVQELDLSLILHEKTLLPLKLSRVASNVGPVQINAPSLKVLSVIDHYPLTTPITYEVVNFSNIDEAALFINYSFNNFYTFMKGLSNVKSLTLGSKHFLSMKNKLDNDKVLLLTFHNLLSLSVEISENCNWSMLVTFLHNAPKLKDLAIEVLHNAPKLKDLAIEKEIEKNSQRKEVVNSSWVGPSVTPSCLSTSLIAFEFKGIQNIKTELDFALYIINQSRKLEKVKIFTPDSEKVVERSLLKGSKKSSILVWFV