AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84248

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84248.t1 MTR_4g056040 65.096 467 83 7 1 387 1 467 0.0 545
MS.gene84248.t1 MTR_4g056030 59.039 437 129 8 1 387 1 437 2.84e-164 468
MS.gene84248.t1 MTR_4g055990 55.324 479 122 10 1 387 1 479 6.56e-156 449
MS.gene84248.t1 MTR_4g055990 55.532 479 121 11 1 387 1 479 1.20e-155 448
MS.gene84248.t1 MTR_4g055580 55.485 474 123 10 1 387 92 564 3.57e-147 429
MS.gene84248.t1 MTR_4g056070 56.522 437 100 9 1 347 1 437 5.76e-143 413
MS.gene84248.t1 MTR_1g038710 50.000 448 156 9 1 387 11 451 7.01e-124 365
MS.gene84248.t1 MTR_7g110920 50.155 323 94 5 129 387 1 320 3.18e-89 272
MS.gene84248.t1 MTR_1g090883 50.145 345 120 10 2 295 12 355 4.48e-88 271
MS.gene84248.t1 MTR_4g056020 82.979 141 24 0 247 387 1 141 7.63e-78 237
MS.gene84248.t1 MTR_4g056020 55.172 203 39 5 1 191 1 163 1.07e-56 192
MS.gene84248.t1 MTR_1g090900 46.078 204 59 6 1 191 1 166 1.77e-42 147
MS.gene84248.t1 MTR_4g056010 68.000 100 22 3 98 191 1 96 1.37e-36 129
MS.gene84248.t1 MTR_4g093690 36.162 271 116 9 1 218 10 276 7.30e-34 127
MS.gene84248.t1 MTR_1g090890 67.033 91 24 2 300 387 29 116 1.20e-31 116
MS.gene84248.t1 MTR_7g056433 26.702 382 224 16 4 361 7 356 6.17e-17 82.0
MS.gene84248.t1 MTR_5g008950 26.289 388 199 14 11 363 1 336 2.25e-16 80.5
MS.gene84248.t1 MTR_3g108560 26.984 378 216 16 6 361 17 356 1.10e-14 75.5
MS.gene84248.t1 MTR_8g014160 25.783 415 241 17 4 383 36 418 1.30e-14 75.5
MS.gene84248.t1 MTR_3g107120 25.917 409 236 15 1 375 1 376 6.05e-14 73.2
MS.gene84248.t1 MTR_1g053025 23.399 406 257 14 9 384 2 383 1.84e-13 71.6
MS.gene84248.t1 MTR_2g007500 26.000 350 205 15 9 335 14 332 2.27e-12 67.8
MS.gene84248.t1 MTR_6g022390 42.424 66 38 0 9 74 5 70 4.49e-12 63.9
MS.gene84248.t1 MTR_2g007100 59.091 44 18 0 9 52 2 45 6.99e-12 61.2
MS.gene84248.t1 MTR_3g026920 26.142 394 223 20 9 363 19 383 4.15e-11 64.3
MS.gene84248.t1 MTR_1g108800 24.462 372 210 10 9 370 8 318 4.48e-11 63.9
MS.gene84248.t1 MTR_7g110910 78.947 38 8 0 1 38 158 195 7.04e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84248.t1 AT3G03030 26.216 370 180 14 9 295 2 361 6.63e-17 82.4
MS.gene84248.t1 AT5G41830 22.879 389 216 11 3 313 7 389 2.35e-14 74.7
MS.gene84248.t1 AT3G03030 26.791 321 146 13 9 246 2 316 3.00e-14 73.6
MS.gene84248.t1 AT5G38570 23.919 393 256 13 9 383 2 369 6.55e-14 72.8
MS.gene84248.t1 AT5G38386 24.308 325 179 8 9 295 2 297 1.20e-13 72.4
MS.gene84248.t1 AT5G38386 24.308 325 179 8 9 295 2 297 1.20e-13 72.4
MS.gene84248.t1 AT5G38392 34.641 153 68 4 9 154 2 129 1.77e-13 69.7
MS.gene84248.t1 AT3G59000 32.487 197 92 8 9 191 2 171 3.52e-13 70.5
MS.gene84248.t1 AT3G59190 28.910 211 118 6 9 212 12 197 5.09e-13 70.5
MS.gene84248.t1 AT3G59190 28.910 211 118 6 9 212 12 197 7.18e-13 70.5
MS.gene84248.t1 AT3G03040 33.775 151 78 2 9 158 2 131 1.70e-12 68.9
MS.gene84248.t1 AT4G13960 26.098 387 214 16 9 382 2 329 3.25e-12 68.2
MS.gene84248.t1 AT4G13960 26.098 387 214 16 9 382 2 329 3.25e-12 68.2
MS.gene84248.t1 AT3G59000 33.974 156 81 4 9 163 2 136 6.04e-12 67.4
MS.gene84248.t1 AT4G14103 31.210 157 76 4 9 161 8 136 6.35e-12 67.4
MS.gene84248.t1 AT4G14103 31.210 157 76 4 9 161 8 136 1.24e-11 66.2
MS.gene84248.t1 AT4G14103 31.210 157 76 4 9 161 8 136 1.24e-11 66.2
MS.gene84248.t1 AT1G58310 27.638 199 108 6 9 192 8 185 2.47e-11 65.5
MS.gene84248.t1 AT3G58950 24.214 318 191 9 9 295 2 300 2.65e-11 65.1
MS.gene84248.t1 AT3G62440 48.387 62 32 0 9 70 2 63 3.12e-11 65.1
MS.gene84248.t1 AT4G14096 28.947 152 76 4 8 155 7 130 3.28e-11 65.1
MS.gene84248.t1 AT4G14096 28.947 152 76 4 8 155 7 130 3.28e-11 65.1

Find 69 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTACATTTGAATTTAT+TGG 0.069289 4.1:+42267878 MS.gene84248:CDS
CTTGCAAGATACGTAAGTTT+TGG 0.259295 4.1:-42267433 None:intergenic
AGAAATCCTCCGTACTAGTA+TGG 0.259970 4.1:+42268035 MS.gene84248:CDS
GCAGATCGACTCCCATCTTT+TGG 0.302315 4.1:-42266359 None:intergenic
TTTCAATTACCAGAGATTTC+AGG 0.309929 4.1:+42266403 MS.gene84248:CDS
GTTTCCAACCTCCTTTCTTC+GGG 0.367541 4.1:-42267807 None:intergenic
AGTTTCCAACCTCCTTTCTT+CGG 0.370618 4.1:-42267808 None:intergenic
GTAAACAGACTTGATTTGTT+CGG 0.396934 4.1:-42266437 None:intergenic
ACTTGTGGTCTTAAAATTGC+GGG 0.399508 4.1:+42266724 MS.gene84248:CDS
ACTTTCTAATGTCAAATCAT+TGG 0.410912 4.1:+42267168 MS.gene84248:CDS
TAGAAAGAACTTCAAATGTC+GGG 0.411662 4.1:-42267024 None:intergenic
ATATGACAAATCAAATCGTC+TGG 0.414750 4.1:-42266289 None:intergenic
AAAGTGAAGGTTGGGAATCT+TGG 0.417455 4.1:-42266383 None:intergenic
CAAGGTCCAGGAACTTGACT+TGG 0.426522 4.1:+42266657 MS.gene84248:CDS
ATAAATCCAAGTCAAGTTCC+TGG 0.429062 4.1:-42266663 None:intergenic
TCTTTCCATTTGTCAGAGTC+CGG 0.430288 4.1:+42267114 MS.gene84248:CDS
CAAAATCTTGATAGTGAGAA+AGG 0.438135 4.1:+42266478 MS.gene84248:CDS
GGTAATTGAAAGTGAAGGTT+GGG 0.443422 4.1:-42266391 None:intergenic
CACTTGTGGTCTTAAAATTG+CGG 0.446898 4.1:+42266723 MS.gene84248:CDS
CTAAGGCTCGAGAGCGAGAA+AGG 0.450221 4.1:+42266586 MS.gene84248:CDS
ACTTACGTATCTTGCAAGTA+AGG 0.457475 4.1:+42267438 MS.gene84248:CDS
ACCCACATGTGTACATCATT+TGG 0.460055 4.1:-42266616 None:intergenic
ACCCACATGTGAACATCATA+TGG 0.461866 4.1:-42266508 None:intergenic
CATGTGTTCTATCCAAAAGA+TGG 0.467948 4.1:+42266347 MS.gene84248:CDS
TGATTTGTTCGGACAACAAA+GGG 0.474428 4.1:-42266426 None:intergenic
CCGCTTAGGCTTTCCACTTG+TGG 0.478895 4.1:+42266709 MS.gene84248:CDS
TGAAATCAATTCCCGAAGAA+AGG 0.482837 4.1:+42267796 MS.gene84248:CDS
AACAAAGGGCCTGAAATCTC+TGG 0.488546 4.1:-42266412 None:intergenic
GGCATTAGATCTCAAGGTCC+AGG 0.496808 4.1:+42266645 MS.gene84248:CDS
TGTTCACATGTGGGTTTCAA+AGG 0.497154 4.1:+42266516 MS.gene84248:CDS
AGGAGGTTGGAAACTCTAGC+TGG 0.498435 4.1:+42267816 MS.gene84248:CDS
GTATACAAACTGTTAAAATC+CGG 0.506388 4.1:-42267133 None:intergenic
AAAATCCGGACTCTGACAAA+TGG 0.507415 4.1:-42267119 None:intergenic
GAAACTTACATGAAATGTGT+TGG 0.516194 4.1:-42267200 None:intergenic
ATAGAAAGAACTTCAAATGT+CGG 0.517201 4.1:-42267025 None:intergenic
TGTACACATGTGGGTTTCAA+AGG 0.528762 4.1:+42266624 MS.gene84248:CDS
AAATTCAAATGTAATGAGAC+TGG 0.528787 4.1:-42267873 None:intergenic
GAAATCCTCCGTACTAGTAT+GGG 0.530507 4.1:+42268036 MS.gene84248:CDS
CCGAAAATATAAGAAAACTA+AGG 0.538047 4.1:+42266569 MS.gene84248:CDS
AGTTTGTATACACTCTTGAA+AGG 0.538294 4.1:+42267145 MS.gene84248:CDS
TTCAAAGGCATTAGATCTCA+AGG 0.542872 4.1:+42266639 MS.gene84248:CDS
TGGTAATTGAAAGTGAAGGT+TGG 0.551378 4.1:-42266392 None:intergenic
AAGAGTAGCTTGATGAACAT+TGG 0.552393 4.1:-42267095 None:intergenic
AATGTCAAATCATTGGCTCT+CGG 0.552626 4.1:+42267175 MS.gene84248:CDS
ATGTGTTCTATCCAAAAGAT+GGG 0.563690 4.1:+42266348 MS.gene84248:CDS
TGTCATGCAGTTTCTCAGCA+TGG 0.568272 4.1:+42267297 MS.gene84248:intron
ACCATATGATGTTCACATGT+GGG 0.574529 4.1:+42266507 MS.gene84248:CDS
ATTTCATACCCATACTAGTA+CGG 0.586903 4.1:-42268044 None:intergenic
TGAAAAGAAGAATTGAGTGT+TGG 0.588267 4.1:-42266758 None:intergenic
ACATGTGTACATCATTTGGC+TGG 0.590853 4.1:-42266612 None:intergenic
AATTCCCGAAGAAAGGAGGT+TGG 0.591474 4.1:+42267803 MS.gene84248:CDS
TCACTCAAATAAGTTAGAGA+AGG 0.596663 4.1:+42267949 MS.gene84248:CDS
AAATATCTGAGAGTTGCAGT+TGG 0.597797 4.1:+42267380 MS.gene84248:CDS
TATGACAAATCAAATCGTCT+GGG 0.606583 4.1:-42266288 None:intergenic
GGAGGTTGGAAACTCTAGCT+GGG 0.609970 4.1:+42267817 MS.gene84248:CDS
GCCAAATGATGTACACATGT+GGG 0.612968 4.1:+42266615 MS.gene84248:CDS
TTGATTTGTTCGGACAACAA+AGG 0.614158 4.1:-42266427 None:intergenic
AATCAATTCCCGAAGAAAGG+AGG 0.619715 4.1:+42267799 MS.gene84248:CDS
AGACATGTCGGAGTTACTGA+TGG 0.620396 4.1:-42267845 None:intergenic
TCATACCCATACTAGTACGG+AGG 0.632477 4.1:-42268041 None:intergenic
AGAAAGAACTTCAAATGTCG+GGG 0.636065 4.1:-42267023 None:intergenic
AACCATATGATGTTCACATG+TGG 0.653499 4.1:+42266506 MS.gene84248:CDS
AGACTGGTTATAAGACATGT+CGG 0.656334 4.1:-42267857 None:intergenic
CCACAAGTGGAAAGCCTAAG+CGG 0.661208 4.1:-42266709 None:intergenic
CTTGTGGTCTTAAAATTGCG+GGG 0.666742 4.1:+42266725 MS.gene84248:CDS
AGCCAAATGATGTACACATG+TGG 0.670458 4.1:+42266614 MS.gene84248:CDS
CATGCAGTTTCTCAGCATGG+AGG 0.688384 4.1:+42267300 MS.gene84248:intron
GGTTGGAAACTCTAGCTGGG+TGG 0.692044 4.1:+42267820 MS.gene84248:CDS
TCTCTGGTAATTGAAAGTGA+AGG 0.696256 4.1:-42266396 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATTAATTAATTTGTTTAT+CGG - chr4.1:42267591-42267610 None:intergenic 10.0%
!! AAATAGGAAAAAATAAAGAA+AGG - chr4.1:42266970-42266989 None:intergenic 15.0%
!!! TCACAGTTTATTATTTTTAT+CGG + chr4.1:42267354-42267373 MS.gene84248:CDS 15.0%
!!! TTTGTTTTCTTATATATTCT+TGG - chr4.1:42266462-42266481 None:intergenic 15.0%
!! AAAATTCTAACGATAATGTT+TGG + chr4.1:42267754-42267773 MS.gene84248:intron 20.0%
!! CTCATTACATTTGAATTTAT+TGG + chr4.1:42267878-42267897 MS.gene84248:CDS 20.0%
!! GTAAATAAACATAAAACTGT+AGG - chr4.1:42267685-42267704 None:intergenic 20.0%
!!! CAAATTTTAGAAAGAGAAAT+AGG - chr4.1:42266986-42267005 None:intergenic 20.0%
!!! CCTTAGTTTTCTTATATTTT+CGG - chr4.1:42266572-42266591 None:intergenic 20.0%
! AAATTCAAATGTAATGAGAC+TGG - chr4.1:42267876-42267895 None:intergenic 25.0%
! AAGAATATATCACAGTTGAT+CGG - chr4.1:42266817-42266836 None:intergenic 25.0%
! AATATGATAAGCTCAAAATC+TGG + chr4.1:42267514-42267533 MS.gene84248:intron 25.0%
! ACTTTCTAATGTCAAATCAT+TGG + chr4.1:42267168-42267187 MS.gene84248:CDS 25.0%
! AGCTTAAAAGAAGGTTAAAT+TGG - chr4.1:42267656-42267675 None:intergenic 25.0%
! ATAGAAAGAACTTCAAATGT+CGG - chr4.1:42267028-42267047 None:intergenic 25.0%
! CCGAAAATATAAGAAAACTA+AGG + chr4.1:42266569-42266588 MS.gene84248:CDS 25.0%
! CTATTTACTATATATCCAGT+TGG + chr4.1:42267723-42267742 MS.gene84248:intron 25.0%
! GTATACAAACTGTTAAAATC+CGG - chr4.1:42267136-42267155 None:intergenic 25.0%
! TAAAAGAAGGTTAAATTGGT+AGG - chr4.1:42267652-42267671 None:intergenic 25.0%
! TTGAGAATAGAATTGTATCT+GGG - chr4.1:42267267-42267286 None:intergenic 25.0%
!! ACTCTTCTTTTCTTTAAACT+GGG - chr4.1:42267989-42268008 None:intergenic 25.0%
!! GATCTCAATAATTTTCTATC+TGG + chr4.1:42266860-42266879 MS.gene84248:intron 25.0%
!! TACTCTTCTTTTCTTTAAAC+TGG - chr4.1:42267990-42268009 None:intergenic 25.0%
!! TTTGCAAACTCATATTTTCT+AGG - chr4.1:42267070-42267089 None:intergenic 25.0%
AGGTAAAACAGCTTAAAAGA+AGG - chr4.1:42267665-42267684 None:intergenic 30.0%
AGTTTGTATACACTCTTGAA+AGG + chr4.1:42267145-42267164 MS.gene84248:CDS 30.0%
ATATGACAAATCAAATCGTC+TGG - chr4.1:42266292-42266311 None:intergenic 30.0%
ATGTGTTCTATCCAAAAGAT+GGG + chr4.1:42266348-42266367 MS.gene84248:CDS 30.0%
CTTGAGAATAGAATTGTATC+TGG - chr4.1:42267268-42267287 None:intergenic 30.0%
GAAACTTACATGAAATGTGT+TGG - chr4.1:42267203-42267222 None:intergenic 30.0%
TAGAAAGAACTTCAAATGTC+GGG - chr4.1:42267027-42267046 None:intergenic 30.0%
TATATATCCAGTTGGAAAGT+TGG + chr4.1:42267731-42267750 MS.gene84248:intron 30.0%
TATGACAAATCAAATCGTCT+GGG - chr4.1:42266291-42266310 None:intergenic 30.0%
TCAAGACATAAAAACTGAGT+TGG + chr4.1:42267904-42267923 MS.gene84248:CDS 30.0%
TCACTCAAATAAGTTAGAGA+AGG + chr4.1:42267949-42267968 MS.gene84248:CDS 30.0%
TGAAAAGAAGAATTGAGTGT+TGG - chr4.1:42266761-42266780 None:intergenic 30.0%
TTTCAATTACCAGAGATTTC+AGG + chr4.1:42266403-42266422 MS.gene84248:CDS 30.0%
!! CAAAATCTTGATAGTGAGAA+AGG + chr4.1:42266478-42266497 MS.gene84248:CDS 30.0%
!! GTAAACAGACTTGATTTGTT+CGG - chr4.1:42266440-42266459 None:intergenic 30.0%
AAATAAAGTTCCTCCAGATG+TGG - chr4.1:42266890-42266909 None:intergenic 35.0%
AAATATCTGAGAGTTGCAGT+TGG + chr4.1:42267380-42267399 MS.gene84248:CDS 35.0%
AACCATATGATGTTCACATG+TGG + chr4.1:42266506-42266525 MS.gene84248:CDS 35.0%
AAGAGTAGCTTGATGAACAT+TGG - chr4.1:42267098-42267117 None:intergenic 35.0%
ACCATATGATGTTCACATGT+GGG + chr4.1:42266507-42266526 MS.gene84248:CDS 35.0%
ACTTACGTATCTTGCAAGTA+AGG + chr4.1:42267438-42267457 MS.gene84248:CDS 35.0%
AGAAAGAACTTCAAATGTCG+GGG - chr4.1:42267026-42267045 None:intergenic 35.0%
AGATGAAGAATCTTCAGTGA+CGG - chr4.1:42266794-42266813 None:intergenic 35.0%
AGTAGAAAAAAGCTTACGCA+AGG + chr4.1:42268006-42268025 MS.gene84248:CDS 35.0%
ATAAATCCAAGTCAAGTTCC+TGG - chr4.1:42266666-42266685 None:intergenic 35.0%
CATGTGTTCTATCCAAAAGA+TGG + chr4.1:42266347-42266366 MS.gene84248:CDS 35.0%
GGTAATTGAAAGTGAAGGTT+GGG - chr4.1:42266394-42266413 None:intergenic 35.0%
GTAGAAAAAAGCTTACGCAA+GGG + chr4.1:42268007-42268026 MS.gene84248:CDS 35.0%
TAGAAAAAAGCTTACGCAAG+GGG + chr4.1:42268008-42268027 MS.gene84248:CDS 35.0%
TCTCTGGTAATTGAAAGTGA+AGG - chr4.1:42266399-42266418 None:intergenic 35.0%
TCTCTTCAAGAAGTGAAAAG+AGG - chr4.1:42266942-42266961 None:intergenic 35.0%
TGAAATCAATTCCCGAAGAA+AGG + chr4.1:42267796-42267815 MS.gene84248:CDS 35.0%
TGGTAATTGAAAGTGAAGGT+TGG - chr4.1:42266395-42266414 None:intergenic 35.0%
TGTATCTGGGTGACAAAATA+TGG - chr4.1:42267254-42267273 None:intergenic 35.0%
! AAAAAATCTTGTTGCCGCTT+AGG + chr4.1:42266695-42266714 MS.gene84248:CDS 35.0%
! ACTTGTGGTCTTAAAATTGC+GGG + chr4.1:42266724-42266743 MS.gene84248:CDS 35.0%
! AGACTGGTTATAAGACATGT+CGG - chr4.1:42267860-42267879 None:intergenic 35.0%
! CACTTGTGGTCTTAAAATTG+CGG + chr4.1:42266723-42266742 MS.gene84248:CDS 35.0%
! CTTGCAAGATACGTAAGTTT+TGG - chr4.1:42267436-42267455 None:intergenic 35.0%
! GAATTTTCCAACTTTCCAAC+TGG - chr4.1:42267741-42267760 None:intergenic 35.0%
!! AATGTCAAATCATTGGCTCT+CGG + chr4.1:42267175-42267194 MS.gene84248:CDS 35.0%
!! GAAGTGAAAAGAGGTATTGA+TGG - chr4.1:42266933-42266952 None:intergenic 35.0%
!! TGATTTGTTCGGACAACAAA+GGG - chr4.1:42266429-42266448 None:intergenic 35.0%
!! TTCAAAGGCATTAGATCTCA+AGG + chr4.1:42266639-42266658 MS.gene84248:CDS 35.0%
!! TTGATTTGTTCGGACAACAA+AGG - chr4.1:42266430-42266449 None:intergenic 35.0%
AAAATCCGGACTCTGACAAA+TGG - chr4.1:42267122-42267141 None:intergenic 40.0%
AAAGTGAAGGTTGGGAATCT+TGG - chr4.1:42266386-42266405 None:intergenic 40.0%
AATCAATTCCCGAAGAAAGG+AGG + chr4.1:42267799-42267818 MS.gene84248:CDS 40.0%
ACATGTGTACATCATTTGGC+TGG - chr4.1:42266615-42266634 None:intergenic 40.0%
ACCCACATGTGAACATCATA+TGG - chr4.1:42266511-42266530 None:intergenic 40.0%
ACCCACATGTGTACATCATT+TGG - chr4.1:42266619-42266638 None:intergenic 40.0%
AGAAATCCTCCGTACTAGTA+TGG + chr4.1:42268035-42268054 MS.gene84248:CDS 40.0%
AGCCAAATGATGTACACATG+TGG + chr4.1:42266614-42266633 MS.gene84248:CDS 40.0%
AGTTTCCAACCTCCTTTCTT+CGG - chr4.1:42267811-42267830 None:intergenic 40.0%
GCCAAATGATGTACACATGT+GGG + chr4.1:42266615-42266634 MS.gene84248:CDS 40.0%
TCTTTCCATTTGTCAGAGTC+CGG + chr4.1:42267114-42267133 MS.gene84248:CDS 40.0%
TGTACACATGTGGGTTTCAA+AGG + chr4.1:42266624-42266643 MS.gene84248:CDS 40.0%
TGTTCACATGTGGGTTTCAA+AGG + chr4.1:42266516-42266535 MS.gene84248:CDS 40.0%
! CTTGTGGTCTTAAAATTGCG+GGG + chr4.1:42266725-42266744 MS.gene84248:CDS 40.0%
! GTCGGGGTATTAATTTCTAC+TGG - chr4.1:42267010-42267029 None:intergenic 40.0%
!! GGTATTGATGGCTATTCGAA+AGG - chr4.1:42266921-42266940 None:intergenic 40.0%
!!! CGCAATTTTAAGACCACAAG+TGG - chr4.1:42266725-42266744 None:intergenic 40.0%
!!! GCGGCAACAAGATTTTTTCA+TGG - chr4.1:42266693-42266712 None:intergenic 40.0%
AACAAAGGGCCTGAAATCTC+TGG - chr4.1:42266415-42266434 None:intergenic 45.0%
AATTCCCGAAGAAAGGAGGT+TGG + chr4.1:42267803-42267822 MS.gene84248:CDS 45.0%
AGACATGTCGGAGTTACTGA+TGG - chr4.1:42267848-42267867 None:intergenic 45.0%
GCACAAGAAGAGCAAAGACT+TGG + chr4.1:42267536-42267555 MS.gene84248:intron 45.0%
GTTTCCAACCTCCTTTCTTC+GGG - chr4.1:42267810-42267829 None:intergenic 45.0%
TCTATCTGGTTGTCCACATC+TGG + chr4.1:42266874-42266893 MS.gene84248:intron 45.0%
TGTCATGCAGTTTCTCAGCA+TGG + chr4.1:42267297-42267316 MS.gene84248:intron 45.0%
AGGAGGTTGGAAACTCTAGC+TGG + chr4.1:42267816-42267835 MS.gene84248:CDS 50.0%
ATCTGGTTGTCCACATCTGG+AGG + chr4.1:42266877-42266896 MS.gene84248:intron 50.0%
CAAGGTCCAGGAACTTGACT+TGG + chr4.1:42266657-42266676 MS.gene84248:CDS 50.0%
CATGCAGTTTCTCAGCATGG+AGG + chr4.1:42267300-42267319 MS.gene84248:intron 50.0%
CCACAAGTGGAAAGCCTAAG+CGG - chr4.1:42266712-42266731 None:intergenic 50.0%
GGAGGTTGGAAACTCTAGCT+GGG + chr4.1:42267817-42267836 MS.gene84248:CDS 50.0%
GGCATTAGATCTCAAGGTCC+AGG + chr4.1:42266645-42266664 MS.gene84248:CDS 50.0%
!! GCAGATCGACTCCCATCTTT+TGG - chr4.1:42266362-42266381 None:intergenic 50.0%
CCGCTTAGGCTTTCCACTTG+TGG + chr4.1:42266709-42266728 MS.gene84248:CDS 55.0%
CTAAGGCTCGAGAGCGAGAA+AGG + chr4.1:42266586-42266605 MS.gene84248:CDS 55.0%
GGTTGGAAACTCTAGCTGGG+TGG + chr4.1:42267820-42267839 MS.gene84248:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 42266247 42268057 42266247 ID=MS.gene84248
chr4.1 mRNA 42266247 42268057 42266247 ID=MS.gene84248.t1;Parent=MS.gene84248
chr4.1 exon 42266247 42266781 42266247 ID=MS.gene84248.t1.exon1;Parent=MS.gene84248.t1
chr4.1 CDS 42266247 42266781 42266247 ID=cds.MS.gene84248.t1;Parent=MS.gene84248.t1
chr4.1 exon 42267011 42267213 42267011 ID=MS.gene84248.t1.exon2;Parent=MS.gene84248.t1
chr4.1 CDS 42267011 42267213 42267011 ID=cds.MS.gene84248.t1;Parent=MS.gene84248.t1
chr4.1 exon 42267307 42267459 42267307 ID=MS.gene84248.t1.exon3;Parent=MS.gene84248.t1
chr4.1 CDS 42267307 42267459 42267307 ID=cds.MS.gene84248.t1;Parent=MS.gene84248.t1
chr4.1 exon 42267788 42268057 42267788 ID=MS.gene84248.t1.exon4;Parent=MS.gene84248.t1
chr4.1 CDS 42267788 42268057 42267788 ID=cds.MS.gene84248.t1;Parent=MS.gene84248.t1
Gene Sequence

>MS.gene84248

ATGGCGTGCTCTGATGAAGAACACGATCGATTAAGCAATCTCCCAGACGATTTGATTTGTCATATTTTGTCTTTCATATCAACAAAAGAGTCTTATAGAACATGTGTTCTATCCAAAAGATGGGAGTCGATCTGCACCAAGATTCCCAACCTTCACTTTCAATTACCAGAGATTTCAGGCCCTTTGTTGTCCGAACAAATCAAGTCTGTTTACCAAGAATATATAAGAAAACAAAATCTTGATAGTGAGAAAGGTTGCGAACCATATGATGTTCACATGTGGGTTTCAAAGGCATTTGTAAATTTTGCTCTGCTAAGACGCACCGAAAATATAAGAAAACTAAGGCTCGAGAGCGAGAAAGGCTGCCAGCCAAATGATGTACACATGTGGGTTTCAAAGGCATTAGATCTCAAGGTCCAGGAACTTGACTTGGATTTATTTCTCCATGAAAAAATCTTGTTGCCGCTTAGGCTTTCCACTTGTGGTCTTAAAATTGCGGGGCAGAATTCAACCAACACTCAATTCTTCTTTTCATGTATATTTACCGTCACTGAAGATTCTTCATCTCCGATCAACTGTGATATATTCTTTCTTTGATGATCAAAAAGAGTATGATCTCAATAATTTTCTATCTGGTTGTCCACATCTGGAGGAACTTTATTTAAATGAGACCTTTCGAATAGCCATCAATACCTCTTTTCACTTCTTGAAGAGATTATACCTTTCTTTATTTTTTCCTATTTCTCTTTCTAAAATTTGTCCAGTAGAAATTAATACCCCGACATTTGAAGTTCTTTCTATTATTGATTTGTCATTGACTCCTAGAAAATATGAGTTTGCAAACTTGTCCAATGTTCATCAAGCTACTCTTTCCATTTGTCAGAGTCCGGATTTTAACAGTTTGTATACACTCTTGAAAGGACTTTCTAATGTCAAATCATTGGCTCTCGGTTCCAACACATTTCATGTAAGTTTCATAATCTCTTCTTTTTTAATTACAAGTTCCATATTTTGTCACCCAGATACAATTCTATTCTCAAGTTATTATTTTGTCATGCAGTTTCTCAGCATGGAGGACAAACTTGACAACTTACATCTTCTCACTTTTCACAGTTTATTATTTTTATCGGTTGAAATATCTGAGAGTTGCAGTTGGAATATGCTCGTCAGCTTTCTGCAGAATGCTCCAAAACTTACGTATCTTGCAAGTAAGGTGTGTATGATGTTTTTTTTAACTATATTTGTACAATATATTTTTAAAAGATAAAATATGATAAGCTCAAAATCTGGCACAAGAAGAGCAAAGACTTGGCAAAAGATACATGTAGTTTGCAAATATAACCGATAAACAAATTAATTAATAGAAAACAATAGATATCTGATCTATATTTATGTAGATTTTCCTACCAATTTAACCTTCTTTTAAGCTGTTTTACCTACAGTTTTATGTTTATTTACTTAATAATATAATTGAAACTATTTACTATATATCCAGTTGGAAAGTTGGAAAATTCTAACGATAATGTTTGGTTTACATGCAGAGAAAACTTGAAATCAATTCCCGAAGAAAGGAGGTTGGAAACTCTAGCTGGGTGGAGCCATCAGTAACTCCGACATGTCTTATAACCAGTCTCATTACATTTGAATTTATTGGAATTCAAGACATAAAAACTGAGTTGGACTTTACGCGATATATTGTAAGTCACTCAAATAAGTTAGAGAAGGTAAAGATTTTCACACCCAGTTTAAAGAAAAGAAGAGTAGAAAAAAGCTTACGCAAGGGGTCAAAGAAATCCTCCGTACTAGTATGG
Protein sequence

>MS.gene84248.t1

MACSDEEHDRLSNLPDDLICHILSFISTKESYRTCVLSKRWESICTKIPNLHFQLPEISGPLLSEQIKSVYQEYIRKQNLDSEKGCEPYDVHMWVSKAFVNFALLRRTENIRKLRLESEKGCQPNDVHMWVSKALDLKVQELDLDLFLHEKILLPLRLSTCGLKIAGQNSTNTQFFFSLEINTPTFEVLSIIDLSLTPRKYEFANLSNVHQATLSICQSPDFNSLYTLLKGLSNVKSLALGSNTFHFLSMEDKLDNLHLLTFHSLLFLSVEISESCSWNMLVSFLQNAPKLTYLASKRKLEINSRRKEVGNSSWVEPSVTPTCLITSLITFEFIGIQDIKTELDFTRYIVSHSNKLEKVKIFTPSLKKRRVEKSLRKGSKKSSVLVW