AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072985

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072985.t1 MTR_7g056020 91.667 264 22 0 1 264 57 320 2.81e-176 501
MS.gene072985.t1 MTR_3g108560 50.000 260 112 6 16 264 83 335 6.84e-64 205
MS.gene072985.t1 MTR_0492s0020 49.042 261 110 6 15 264 148 396 8.24e-61 199
MS.gene072985.t1 MTR_0543s0010 49.042 261 110 6 15 264 148 396 1.44e-60 198
MS.gene072985.t1 MTR_3g109982 55.172 203 84 3 66 264 222 421 6.21e-55 189
MS.gene072985.t1 MTR_3g109982 44.030 134 66 3 15 141 75 206 4.70e-20 90.1
MS.gene072985.t1 MTR_4g080610 43.382 272 110 5 4 259 56 299 8.96e-50 168
MS.gene072985.t1 MTR_3g087260 51.220 205 90 4 66 264 203 403 1.07e-49 170
MS.gene072985.t1 MTR_3g087260 42.857 119 65 2 15 131 64 181 3.24e-17 81.3
MS.gene072985.t1 MTR_3g108560 47.085 223 100 6 16 227 83 298 3.96e-44 152
MS.gene072985.t1 MTR_3g108150 41.727 278 136 8 4 260 57 329 1.13e-42 150
MS.gene072985.t1 MTR_7g088260 40.942 276 132 9 16 273 154 416 5.61e-42 150
MS.gene072985.t1 MTR_3g110010 53.333 165 70 3 66 226 222 383 1.36e-37 140
MS.gene072985.t1 MTR_3g110010 44.030 134 66 3 15 141 75 206 3.72e-20 90.5
MS.gene072985.t1 MTR_7g098570 34.686 271 154 8 3 260 75 335 1.62e-28 113
MS.gene072985.t1 MTR_7g098510 33.621 232 142 5 36 260 107 333 1.66e-27 109
MS.gene072985.t1 MTR_1g041245 35.021 237 133 9 36 260 102 329 5.73e-24 100
MS.gene072985.t1 MTR_7g098480 33.591 259 150 8 16 260 81 331 3.94e-23 98.6
MS.gene072985.t1 MTR_7g032380 30.973 226 124 6 37 260 104 299 2.42e-22 95.1
MS.gene072985.t1 MTR_7g115270 30.872 298 160 9 2 260 54 344 3.66e-22 95.1
MS.gene072985.t1 MTR_3g107940 58.621 87 33 1 178 264 85 168 1.65e-21 92.8
MS.gene072985.t1 MTR_7g032370 32.751 229 134 7 37 260 82 295 2.37e-21 92.4
MS.gene072985.t1 MTR_3g036250 33.585 265 136 12 16 260 68 312 1.01e-20 90.9
MS.gene072985.t1 MTR_7g034115 34.343 198 117 6 70 260 135 326 1.42e-19 87.8
MS.gene072985.t1 MTR_3g040700 31.818 264 141 11 16 260 106 349 1.84e-19 87.8
MS.gene072985.t1 MTR_7g026500 33.180 217 122 7 60 264 138 343 1.00e-18 85.5
MS.gene072985.t1 MTR_7g034120 30.651 261 151 10 18 258 3 253 6.74e-18 82.0
MS.gene072985.t1 MTR_5g007410 34.300 207 109 6 72 260 153 350 8.50e-18 83.2
MS.gene072985.t1 MTR_5g045170 32.922 243 129 7 36 260 107 333 1.23e-17 82.4
MS.gene072985.t1 MTR_7g060470 30.357 224 120 8 63 260 124 337 1.45e-17 82.0
MS.gene072985.t1 MTR_3g071850 31.984 247 129 8 36 260 122 351 3.09e-17 82.0
MS.gene072985.t1 MTR_7g007080 33.659 205 112 6 69 260 134 327 3.21e-17 80.9
MS.gene072985.t1 MTR_3g023630 31.780 236 134 7 36 260 101 320 7.99e-17 79.7
MS.gene072985.t1 MTR_5g054920 35.404 161 82 5 111 260 3 152 1.40e-16 76.3
MS.gene072985.t1 MTR_7g033990 29.670 273 164 8 18 273 76 337 2.14e-16 79.0
MS.gene072985.t1 MTR_6g045333 32.524 206 114 6 72 260 191 388 2.21e-16 79.0
MS.gene072985.t1 MTR_7g033915 34.731 167 95 6 111 273 163 319 3.59e-16 77.8
MS.gene072985.t1 MTR_7g056433 31.381 239 138 7 36 259 103 330 1.48e-15 76.3
MS.gene072985.t1 MTR_6g040270 29.952 207 112 8 69 260 132 320 2.81e-15 75.5
MS.gene072985.t1 MTR_5g083890 30.493 223 123 8 69 273 152 360 6.08e-15 74.7
MS.gene072985.t1 MTR_0009s0080 32.039 206 114 7 72 260 146 342 8.93e-15 73.9
MS.gene072985.t1 MTR_3g099830 29.864 221 124 7 64 265 115 323 1.39e-14 73.2
MS.gene072985.t1 MTR_5g073420 32.314 229 128 11 39 260 111 319 1.69e-14 73.2
MS.gene072985.t1 MTR_3g107100 31.863 204 118 6 69 260 137 331 1.99e-14 73.2
MS.gene072985.t1 MTR_3g082890 30.216 278 152 9 18 260 159 429 3.01e-14 72.8
MS.gene072985.t1 MTR_5g045510 30.348 201 105 4 72 260 137 314 8.46e-14 70.9
MS.gene072985.t1 MTR_3g107120 31.658 199 123 5 69 260 147 339 8.52e-14 71.2
MS.gene072985.t1 MTR_3g105060 31.000 200 112 7 69 260 138 319 1.17e-13 70.5
MS.gene072985.t1 MTR_7g021990 35.096 208 110 7 69 260 169 367 1.74e-13 70.1
MS.gene072985.t1 MTR_7g021950 35.096 208 110 7 69 260 169 367 2.57e-13 70.1
MS.gene072985.t1 MTR_4g039440 28.986 207 123 6 69 260 154 351 2.69e-13 69.7
MS.gene072985.t1 MTR_2g008320 31.401 207 114 8 69 260 178 371 3.84e-13 69.3
MS.gene072985.t1 MTR_5g058000 35.533 197 107 8 71 260 133 316 3.85e-13 68.9
MS.gene072985.t1 MTR_3g107160 29.435 248 136 11 30 260 106 331 7.24e-13 68.2
MS.gene072985.t1 MTR_6g022500 31.156 199 120 6 71 260 228 418 1.27e-12 67.8
MS.gene072985.t1 MTR_2g008310 31.553 206 114 7 69 260 124 316 1.89e-12 67.0
MS.gene072985.t1 MTR_1g108800 29.310 232 133 6 45 260 68 284 2.50e-12 66.6
MS.gene072985.t1 MTR_5g008950 27.805 205 120 7 70 260 119 309 3.09e-12 66.2
MS.gene072985.t1 MTR_1089s0010 28.856 201 120 7 69 260 132 318 5.22e-12 65.9
MS.gene072985.t1 MTR_2g007500 28.846 260 148 8 26 260 83 330 5.69e-12 65.5
MS.gene072985.t1 MTR_7g075800 27.419 248 125 10 69 273 146 381 6.95e-12 65.9
MS.gene072985.t1 MTR_1g085120 29.064 203 123 6 71 260 219 413 1.83e-11 64.3
MS.gene072985.t1 MTR_7g056287 26.697 221 129 8 53 260 114 314 1.91e-11 63.9
MS.gene072985.t1 MTR_1g085120 29.064 203 123 6 71 260 294 488 2.56e-11 63.9
MS.gene072985.t1 MTR_7g075820 25.475 263 163 9 21 273 113 352 6.88e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 65 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTTGGGGCACCATTTA+AGG 0.155891 3.3:-88568004 None:intergenic
TCCTGTCAGTTCACCTTAAA+TGG 0.205871 3.3:+88567991 MS.gene072985:CDS
TTGGTTAGAGCTAACATTTC+CGG 0.251204 3.3:+88568356 MS.gene072985:CDS
GAAAGAAGACGATTTGATTA+TGG 0.300322 3.3:-88568096 None:intergenic
TTTGAGGAATGACAAAGTTT+TGG 0.340722 3.3:-88568129 None:intergenic
GTTTCCAACTCCTGTAGATT+AGG 0.344495 3.3:-88568272 None:intergenic
AGGAGAGCCAGATAGAAGTT+TGG 0.370175 3.3:-88568252 None:intergenic
ATGATAAGAGTTTGAAGCTT+GGG 0.371251 3.3:-88568774 None:intergenic
AGAAAGGTTGTAGCCTGGTT+TGG 0.371341 3.3:+88568312 MS.gene072985:CDS
TTGTTATCATCTTCAATTTG+AGG 0.371938 3.3:-88568145 None:intergenic
TGACCATGAACGGCTGGGAC+TGG 0.382509 3.3:+88568707 MS.gene072985:CDS
TGCCCAGTCCCAGCCGTTCA+TGG 0.386281 3.3:-88568710 None:intergenic
TATCTCACCAAACTTCTATC+TGG 0.395723 3.3:+88568245 MS.gene072985:CDS
CAATGTTTGTGACAAGCTTA+AGG 0.403351 3.3:-88569220 None:intergenic
GTTTGACAATCTAACTCATC+TGG 0.419005 3.3:+88568668 MS.gene072985:CDS
GTTGGAAACAAAGGATTTAG+TGG 0.424824 3.3:+88568286 MS.gene072985:CDS
CTTATCTCGAGCGGCGATGA+AGG 0.426557 3.3:-88567958 None:intergenic
ATGTTGTGAGATGAGATAAA+AGG 0.431165 3.3:-88568971 None:intergenic
GAAGATCAACGTTTGAAACT+TGG 0.433414 3.3:-88568172 None:intergenic
AGTGAGAGGGATGGATGGTT+GGG 0.459409 3.3:-88568064 None:intergenic
CTCTCCTAATCTACAGGAGT+TGG 0.460236 3.3:+88568268 MS.gene072985:CDS
GTTACAACACATGTTCTACT+TGG 0.467444 3.3:+88567908 None:intergenic
ATCTGGCTCTCCTAATCTAC+AGG 0.469916 3.3:+88568262 MS.gene072985:CDS
AACATGAGATGTAGTGGATA+GGG 0.477530 3.3:-88568648 None:intergenic
AAGGATTTAGTGGTAAAGAA+AGG 0.482819 3.3:+88568296 MS.gene072985:CDS
GAGTGAGAGGGATGGATGGT+TGG 0.486728 3.3:-88568065 None:intergenic
AGACATTGACCATGAACGGC+TGG 0.491113 3.3:+88568701 MS.gene072985:CDS
GACCATGAACGGCTGGGACT+GGG 0.492790 3.3:+88568708 MS.gene072985:CDS
ACAATTTCGACGATGGCGGT+TGG 0.495888 3.3:+88568922 MS.gene072985:CDS
TTTCGACGATGGCGGTTGGA+AGG 0.511100 3.3:+88568926 MS.gene072985:CDS
TGATACAAACTTATCCAAGT+TGG 0.519438 3.3:+88568337 MS.gene072985:CDS
TGGGACTGGGCACATTCAAA+TGG 0.534280 3.3:+88568721 MS.gene072985:CDS
AAACATGAGATGTAGTGGAT+AGG 0.534808 3.3:-88568649 None:intergenic
ACCATTTAAGGTGAACTGAC+AGG 0.539597 3.3:-88567992 None:intergenic
TTATCTCGAGCGGCGATGAA+GGG 0.541006 3.3:-88567957 None:intergenic
AATGTTAGCTCTAACCAACT+TGG 0.545027 3.3:-88568351 None:intergenic
GGTAAAGAAAGGTTGTAGCC+TGG 0.546340 3.3:+88568307 MS.gene072985:CDS
CTCGCTCAAAGTACTTCACA+TGG 0.549068 3.3:+88568196 MS.gene072985:CDS
AATGATAAGAGTTTGAAGCT+TGG 0.554312 3.3:-88568775 None:intergenic
CTTAAACATAATATGCCGAC+CGG 0.557808 3.3:-88568375 None:intergenic
CATTAGACATTGACCATGAA+CGG 0.557897 3.3:+88568697 MS.gene072985:CDS
TGATAAGAGTTTGAAGCTTG+GGG 0.562294 3.3:-88568773 None:intergenic
TTGATATACATACCACATGT+AGG 0.563352 3.3:-88568424 None:intergenic
TTGTCAAACATGAGATGTAG+TGG 0.563801 3.3:-88568654 None:intergenic
TCAAACTCTTATCATTCATG+AGG 0.568075 3.3:+88568782 MS.gene072985:CDS
GAAGCTTGGGGAAATGTGAA+AGG 0.578728 3.3:-88568761 None:intergenic
ATCAGAGTGAGAGGGATGGA+TGG 0.583194 3.3:-88568069 None:intergenic
ATGTGAAGTACTTTGAGCGA+GGG 0.583803 3.3:-88568194 None:intergenic
TCTACAGGAGTTGGAAACAA+AGG 0.584438 3.3:+88568277 MS.gene072985:CDS
GACATTGACCATGAACGGCT+GGG 0.596928 3.3:+88568702 MS.gene072985:CDS
TATGGAGCAATCAGAGTGAG+AGG 0.597581 3.3:-88568078 None:intergenic
AGTTTGTATCATTCCAAACC+AGG 0.601004 3.3:-88568325 None:intergenic
TTTAAGGTGAACTGACAGGA+AGG 0.602674 3.3:-88567988 None:intergenic
TGGGCACATTCAAATGGAGA+TGG 0.602845 3.3:+88568727 MS.gene072985:CDS
GTAAACAATTTCGACGATGG+CGG 0.608830 3.3:+88568918 MS.gene072985:CDS
ATAAAGTCGTCGTTGAATAG+CGG 0.615262 3.3:-88568039 None:intergenic
AGATGAGATAAAAGGCATGC+TGG 0.617695 3.3:-88568963 None:intergenic
ATGGAGCAATCAGAGTGAGA+GGG 0.622967 3.3:-88568077 None:intergenic
CATGTGAAGTACTTTGAGCG+AGG 0.624165 3.3:-88568195 None:intergenic
CGAGCATCTGCGCCTACATG+TGG 0.633926 3.3:+88568412 MS.gene072985:CDS
AGCAATCAGAGTGAGAGGGA+TGG 0.634531 3.3:-88568073 None:intergenic
GGGTAGATTCTTATCTCGAG+CGG 0.667001 3.3:-88567967 None:intergenic
ACAGTAAACAATTTCGACGA+TGG 0.667484 3.3:+88568915 MS.gene072985:CDS
TTAAGGTGAACTGACAGGAA+GGG 0.677390 3.3:-88567987 None:intergenic
TTAGAGCTAACATTTCCGGT+CGG 0.704519 3.3:+88568360 MS.gene072985:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTTGAATGATAA+TGG + chr3.3:88569175-88569194 MS.gene072985:intron 10.0%
!! ATAAAAAAAATACATAGAAG+TGG - chr3.3:88568853-88568872 None:intergenic 15.0%
!! AATAAATAAAAGTTGACATG+TGG - chr3.3:88569165-88569184 None:intergenic 20.0%
!!! CATAAACAATTTTATTCTTG+GGG - chr3.3:88568019-88568038 None:intergenic 20.0%
!!! GCATAAACAATTTTATTCTT+GGG - chr3.3:88568020-88568039 None:intergenic 20.0%
!!! TTTATTTGAATGATAATGGA+TGG + chr3.3:88569179-88569198 MS.gene072985:intron 20.0%
! AAAAATACATAGAAGTGGAA+TGG - chr3.3:88568848-88568867 None:intergenic 25.0%
! AGTCACATTGTTCAATTTAA+GGG + chr3.3:88568533-88568552 MS.gene072985:intron 25.0%
! TTGTTATCATCTTCAATTTG+AGG - chr3.3:88568148-88568167 None:intergenic 25.0%
!! GGCATAAACAATTTTATTCT+TGG - chr3.3:88568021-88568040 None:intergenic 25.0%
!! TGTATTTGTATCTACTGATT+CGG - chr3.3:88569096-88569115 None:intergenic 25.0%
AAGGATTTAGTGGTAAAGAA+AGG + chr3.3:88568296-88568315 MS.gene072985:CDS 30.0%
ATGTTGTGAGATGAGATAAA+AGG - chr3.3:88568974-88568993 None:intergenic 30.0%
GAAAGAAGACGATTTGATTA+TGG - chr3.3:88568099-88568118 None:intergenic 30.0%
GAGTCACATTGTTCAATTTA+AGG + chr3.3:88568532-88568551 MS.gene072985:intron 30.0%
TCAAACTCTTATCATTCATG+AGG + chr3.3:88568782-88568801 MS.gene072985:CDS 30.0%
TGATACAAACTTATCCAAGT+TGG + chr3.3:88568337-88568356 MS.gene072985:CDS 30.0%
TTGATATACATACCACATGT+AGG - chr3.3:88568427-88568446 None:intergenic 30.0%
! AATGATAAGAGTTTGAAGCT+TGG - chr3.3:88568778-88568797 None:intergenic 30.0%
! ATGATAAGAGTTTGAAGCTT+GGG - chr3.3:88568777-88568796 None:intergenic 30.0%
! ATTGAATCTCACAGTTTTTG+CGG - chr3.3:88569016-88569035 None:intergenic 30.0%
! GACTCAATTCGTAATTTTTC+TGG - chr3.3:88568517-88568536 None:intergenic 30.0%
! TTTGAGGAATGACAAAGTTT+TGG - chr3.3:88568132-88568151 None:intergenic 30.0%
!! ACAAAGTTTTGGTAGTTAGA+GGG - chr3.3:88568121-88568140 None:intergenic 30.0%
!!! GCTATTTCTCTCAATTTTCA+AGG + chr3.3:88568564-88568583 MS.gene072985:intron 30.0%
ACAGTAAACAATTTCGACGA+TGG + chr3.3:88568915-88568934 MS.gene072985:CDS 35.0%
AGTTTGTATCATTCCAAACC+AGG - chr3.3:88568328-88568347 None:intergenic 35.0%
ATAAAGTCGTCGTTGAATAG+CGG - chr3.3:88568042-88568061 None:intergenic 35.0%
CAATGTTTGTGACAAGCTTA+AGG - chr3.3:88569223-88569242 None:intergenic 35.0%
CATTAGACATTGACCATGAA+CGG + chr3.3:88568697-88568716 MS.gene072985:CDS 35.0%
CTTAAACATAATATGCCGAC+CGG - chr3.3:88568378-88568397 None:intergenic 35.0%
GAGATAATTCCTTGATCGTT+TGG - chr3.3:88569124-88569143 None:intergenic 35.0%
GTTGGAAACAAAGGATTTAG+TGG + chr3.3:88568286-88568305 MS.gene072985:CDS 35.0%
GTTTGACAATCTAACTCATC+TGG + chr3.3:88568668-88568687 MS.gene072985:CDS 35.0%
TACAAAACTCCAAACGATCA+AGG + chr3.3:88569112-88569131 MS.gene072985:intron 35.0%
TACATAGAAGTGGAATGGAA+TGG - chr3.3:88568843-88568862 None:intergenic 35.0%
TATCTCACCAAACTTCTATC+TGG + chr3.3:88568245-88568264 MS.gene072985:CDS 35.0%
TTCAACTGTGTATCATTGTC+AGG + chr3.3:88568887-88568906 MS.gene072985:intron 35.0%
TTGGTTAGAGCTAACATTTC+CGG + chr3.3:88568356-88568375 MS.gene072985:CDS 35.0%
TTGTCAAACATGAGATGTAG+TGG - chr3.3:88568657-88568676 None:intergenic 35.0%
! GAAGATCAACGTTTGAAACT+TGG - chr3.3:88568175-88568194 None:intergenic 35.0%
! TGATAAGAGTTTGAAGCTTG+GGG - chr3.3:88568776-88568795 None:intergenic 35.0%
!! AAACATGAGATGTAGTGGAT+AGG - chr3.3:88568652-88568671 None:intergenic 35.0%
!! AACATGAGATGTAGTGGATA+GGG - chr3.3:88568651-88568670 None:intergenic 35.0%
!! AATGTTAGCTCTAACCAACT+TGG - chr3.3:88568354-88568373 None:intergenic 35.0%
!! GAATCTATCACTTTTGCAGA+TGG + chr3.3:88568218-88568237 MS.gene072985:CDS 35.0%
!! GACAAAGTTTTGGTAGTTAG+AGG - chr3.3:88568122-88568141 None:intergenic 35.0%
AGGAATTATCTCTCTGCCAA+AGG + chr3.3:88569132-88569151 MS.gene072985:intron 40.0%
GACATGTGGTTGAATTCCTT+TGG - chr3.3:88569151-88569170 None:intergenic 40.0%
GTAAACAATTTCGACGATGG+CGG + chr3.3:88568918-88568937 MS.gene072985:CDS 40.0%
GTTTCCAACTCCTGTAGATT+AGG - chr3.3:88568275-88568294 None:intergenic 40.0%
TCCTGTCAGTTCACCTTAAA+TGG + chr3.3:88567991-88568010 MS.gene072985:CDS 40.0%
TCTACAGGAGTTGGAAACAA+AGG + chr3.3:88568277-88568296 MS.gene072985:CDS 40.0%
TTAAGGTGAACTGACAGGAA+GGG - chr3.3:88567990-88568009 None:intergenic 40.0%
TTAGAGCTAACATTTCCGGT+CGG + chr3.3:88568360-88568379 MS.gene072985:CDS 40.0%
TTCGGCAATCTGAATTGTCA+TGG - chr3.3:88569078-88569097 None:intergenic 40.0%
! ACCATTTAAGGTGAACTGAC+AGG - chr3.3:88567995-88568014 None:intergenic 40.0%
! AGATGAGATAAAAGGCATGC+TGG - chr3.3:88568966-88568985 None:intergenic 40.0%
! ATGTGAAGTACTTTGAGCGA+GGG - chr3.3:88568197-88568216 None:intergenic 40.0%
! TATTCTTGGGGCACCATTTA+AGG - chr3.3:88568007-88568026 None:intergenic 40.0%
! TTTAAGGTGAACTGACAGGA+AGG - chr3.3:88567991-88568010 None:intergenic 40.0%
AGAAAGGTTGTAGCCTGGTT+TGG + chr3.3:88568312-88568331 MS.gene072985:CDS 45.0%
AGGAGAGCCAGATAGAAGTT+TGG - chr3.3:88568255-88568274 None:intergenic 45.0%
ATGGAGCAATCAGAGTGAGA+GGG - chr3.3:88568080-88568099 None:intergenic 45.0%
CTCTCCTAATCTACAGGAGT+TGG + chr3.3:88568268-88568287 MS.gene072985:CDS 45.0%
GAAGCTTGGGGAAATGTGAA+AGG - chr3.3:88568764-88568783 None:intergenic 45.0%
GGGTAGATTCTTATCTCGAG+CGG - chr3.3:88567970-88567989 None:intergenic 45.0%
GGTAAAGAAAGGTTGTAGCC+TGG + chr3.3:88568307-88568326 MS.gene072985:CDS 45.0%
TATGGAGCAATCAGAGTGAG+AGG - chr3.3:88568081-88568100 None:intergenic 45.0%
TGGGCACATTCAAATGGAGA+TGG + chr3.3:88568727-88568746 MS.gene072985:CDS 45.0%
! CATGTGAAGTACTTTGAGCG+AGG - chr3.3:88568198-88568217 None:intergenic 45.0%
! CTCGCTCAAAGTACTTCACA+TGG + chr3.3:88568196-88568215 MS.gene072985:CDS 45.0%
!! ATCTGGCTCTCCTAATCTAC+AGG + chr3.3:88568262-88568281 MS.gene072985:CDS 45.0%
AGACATTGACCATGAACGGC+TGG + chr3.3:88568701-88568720 MS.gene072985:CDS 50.0%
AGCAATCAGAGTGAGAGGGA+TGG - chr3.3:88568076-88568095 None:intergenic 50.0%
AGTGAGAGGGATGGATGGTT+GGG - chr3.3:88568067-88568086 None:intergenic 50.0%
ATCAGAGTGAGAGGGATGGA+TGG - chr3.3:88568072-88568091 None:intergenic 50.0%
GACATTGACCATGAACGGCT+GGG + chr3.3:88568702-88568721 MS.gene072985:CDS 50.0%
TGGGACTGGGCACATTCAAA+TGG + chr3.3:88568721-88568740 MS.gene072985:CDS 50.0%
TTATCTCGAGCGGCGATGAA+GGG - chr3.3:88567960-88567979 None:intergenic 50.0%
! ACAATTTCGACGATGGCGGT+TGG + chr3.3:88568922-88568941 MS.gene072985:CDS 50.0%
CTTATCTCGAGCGGCGATGA+AGG - chr3.3:88567961-88567980 None:intergenic 55.0%
GAGTGAGAGGGATGGATGGT+TGG - chr3.3:88568068-88568087 None:intergenic 55.0%
! TTTCGACGATGGCGGTTGGA+AGG + chr3.3:88568926-88568945 MS.gene072985:CDS 55.0%
CGAGCATCTGCGCCTACATG+TGG + chr3.3:88568412-88568431 MS.gene072985:CDS 60.0%
GACCATGAACGGCTGGGACT+GGG + chr3.3:88568708-88568727 MS.gene072985:CDS 60.0%
TGACCATGAACGGCTGGGAC+TGG + chr3.3:88568707-88568726 MS.gene072985:CDS 60.0%
TGCCCAGTCCCAGCCGTTCA+TGG - chr3.3:88568713-88568732 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 88567918 88569245 88567918 ID=MS.gene072985
chr3.3 mRNA 88567918 88569245 88567918 ID=MS.gene072985.t1;Parent=MS.gene072985
chr3.3 exon 88567918 88568433 88567918 ID=MS.gene072985.t1.exon1;Parent=MS.gene072985.t1
chr3.3 CDS 88567918 88568433 88567918 ID=cds.MS.gene072985.t1;Parent=MS.gene072985.t1
chr3.3 exon 88568642 88568803 88568642 ID=MS.gene072985.t1.exon2;Parent=MS.gene072985.t1
chr3.3 CDS 88568642 88568803 88568642 ID=cds.MS.gene072985.t1;Parent=MS.gene072985.t1
chr3.3 exon 88568909 88569023 88568909 ID=MS.gene072985.t1.exon3;Parent=MS.gene072985.t1
chr3.3 CDS 88568909 88569023 88568909 ID=cds.MS.gene072985.t1;Parent=MS.gene072985.t1
chr3.3 exon 88569211 88569245 88569211 ID=MS.gene072985.t1.exon4;Parent=MS.gene072985.t1
chr3.3 CDS 88569211 88569245 88569211 ID=cds.MS.gene072985.t1;Parent=MS.gene072985.t1
Gene Sequence

>MS.gene072985

ATGTTCTACTTGGATGAAAAACACTCTCGAGACTCTCTACCCTTCATCGCCGCTCGAGATAAGAATCTACCCTTCCTGTCAGTTCACCTTAAATGGTGCCCCAAGAATAAAATTGTTTATGCCGCTATTCAACGACGACTTTATAACCCAACCATCCATCCCTCTCACTCTGATTGCTCCATAATCAAATCGTCTTCTTTCCCTCTAACTACCAAAACTTTGTCATTCCTCAAATTGAAGATGATAACAATCAGCCAAGTTTCAAACGTTGATCTTCCCTCGCTCAAAGTACTTCACATGGAATCTATCACTTTTGCAGATGGTGAATATCTCACCAAACTTCTATCTGGCTCTCCTAATCTACAGGAGTTGGAAACAAAGGATTTAGTGGTAAAGAAAGGTTGTAGCCTGGTTTGGAATGATACAAACTTATCCAAGTTGGTTAGAGCTAACATTTCCGGTCGGCATATTATGTTTAAGCAACTTTATAACGTCGAGCATCTGCGCCTACATGTGGTATGTATATCAATATATTTATCAAATTTACAAAATACTAGCAAATTACATTAGTCTCTTAAGTTAAGATAATCAATTTACCAGAAAAATTACGAATTGAGTCACATTGTTCAATTTAAGGGAGTAAATTGCTATTTCTCTCAATTTTCAAGGATGAAAATTTTGATTTACTCAACTCATTAATATTATGTCTTTGCAACTCATGCAGACATGTCCCTATCCACTACATCTCATGTTTGACAATCTAACTCATCTGGAGCTTACATTAGACATTGACCATGAACGGCTGGGACTGGGCACATTCAAATGGAGATGGCTGAATATTCTCCTTTCACATTTCCCCAAGCTTCAAACTCTTATCATTCATGAGGTTTTTAATGTCAAGTTTTGTCATGTCTTTTCTTTTCCATTCCATTCCACTTCTATGTATTTTTTTTATATCTTTCAAAACATTTCAACTGTGTATCATTGTCAGGTTGATACAGTAAACAATTTCGACGATGGCGGTTGGAAGGAACTACATACTGTACCAGCATGCCTTTTATCTCATCTCACAACATGCTCACTTAGAAATTACTGCCGCAAAAACTGTGAGATTCAATTTGCAAAATATATCTTGAAGAACTCAAGAGTACTAAACACCATGACAATTCAGATTGCCGAATCAGTAGATACAAATACAAAACTCCAAACGATCAAGGAATTATCTCTCTGCCAAAGGAATTCAACCACATGTCAACTTTTATTTATTTGAATGATAATGGATGGAGCGTGCAGTAGCAGCAGCCTTAAGCTTGTCACAAACATTGTAA
Protein sequence

>MS.gene072985.t1

MFYLDEKHSRDSLPFIAARDKNLPFLSVHLKWCPKNKIVYAAIQRRLYNPTIHPSHSDCSIIKSSSFPLTTKTLSFLKLKMITISQVSNVDLPSLKVLHMESITFADGEYLTKLLSGSPNLQELETKDLVVKKGCSLVWNDTNLSKLVRANISGRHIMFKQLYNVEHLRLHVTCPYPLHLMFDNLTHLELTLDIDHERLGLGTFKWRWLNILLSHFPKLQTLIIHEVDTVNNFDDGGWKELHTVPACLLSHLTTCSLRNYCRKNLAAALSLSQTL