Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011068.t1 | RHN40797.1 | 63.1 | 249 | 63 | 3 | 21 | 244 | 107 | 351 | 7.40E-78 | 300.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011068.t1 | A0A396GQ43 | 63.1 | 249 | 63 | 3 | 21 | 244 | 107 | 351 | 5.3e-78 | 300.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011068.t1 | MTR_8g014210 | 58.974 | 234 | 69 | 2 | 35 | 244 | 1 | 231 | 2.17e-86 | 256 |
MS.gene011068.t1 | MTR_8g445780 | 63.819 | 199 | 48 | 1 | 21 | 195 | 192 | 390 | 1.47e-81 | 249 |
MS.gene011068.t1 | MTR_4g024710 | 53.414 | 249 | 88 | 3 | 21 | 244 | 102 | 347 | 4.49e-80 | 244 |
MS.gene011068.t1 | MTR_8g014260 | 54.618 | 249 | 85 | 3 | 21 | 244 | 206 | 451 | 4.92e-79 | 245 |
MS.gene011068.t1 | MTR_4g024745 | 53.219 | 233 | 79 | 4 | 21 | 227 | 56 | 284 | 5.80e-73 | 224 |
MS.gene011068.t1 | MTR_2g083840 | 45.769 | 260 | 112 | 4 | 13 | 244 | 199 | 457 | 8.72e-55 | 182 |
MS.gene011068.t1 | MTR_8g062270 | 43.396 | 265 | 108 | 9 | 13 | 243 | 197 | 453 | 5.44e-49 | 167 |
MS.gene011068.t1 | MTR_5g092960 | 41.573 | 267 | 111 | 7 | 16 | 243 | 201 | 461 | 2.26e-46 | 160 |
MS.gene011068.t1 | MTR_8g468810 | 41.445 | 263 | 122 | 6 | 13 | 244 | 202 | 463 | 2.75e-46 | 160 |
MS.gene011068.t1 | MTR_8g058970 | 43.019 | 265 | 118 | 6 | 13 | 244 | 213 | 477 | 4.01e-45 | 157 |
MS.gene011068.t1 | MTR_8g014160 | 41.564 | 243 | 92 | 8 | 13 | 244 | 222 | 425 | 1.83e-44 | 154 |
MS.gene011068.t1 | MTR_8g468840 | 40.400 | 250 | 112 | 8 | 23 | 241 | 204 | 447 | 1.33e-40 | 145 |
MS.gene011068.t1 | MTR_8g468760 | 41.026 | 234 | 130 | 7 | 13 | 243 | 190 | 418 | 1.47e-38 | 139 |
MS.gene011068.t1 | MTR_8g077460 | 50.000 | 148 | 47 | 3 | 121 | 244 | 231 | 375 | 1.96e-36 | 132 |
MS.gene011068.t1 | MTR_8g467800 | 37.405 | 262 | 121 | 9 | 19 | 244 | 199 | 453 | 9.06e-36 | 132 |
MS.gene011068.t1 | MTR_4g032730 | 36.620 | 284 | 115 | 11 | 13 | 243 | 195 | 466 | 6.11e-34 | 127 |
MS.gene011068.t1 | MTR_8g014230 | 57.143 | 91 | 35 | 2 | 154 | 244 | 18 | 104 | 1.37e-27 | 102 |
MS.gene011068.t1 | MTR_8g468810 | 45.890 | 146 | 72 | 3 | 13 | 152 | 202 | 346 | 2.41e-25 | 102 |
MS.gene011068.t1 | MTR_8g469020 | 33.463 | 257 | 134 | 10 | 18 | 244 | 202 | 451 | 3.98e-23 | 97.4 |
MS.gene011068.t1 | MTR_8g062310 | 32.967 | 273 | 126 | 12 | 5 | 244 | 180 | 428 | 7.82e-23 | 96.7 |
MS.gene011068.t1 | MTR_5g092960 | 48.800 | 125 | 55 | 2 | 16 | 131 | 201 | 325 | 1.16e-22 | 95.9 |
MS.gene011068.t1 | MTR_8g070950 | 31.227 | 269 | 137 | 10 | 10 | 245 | 182 | 435 | 4.27e-22 | 94.4 |
MS.gene011068.t1 | MTR_8g062080 | 32.075 | 265 | 124 | 13 | 18 | 245 | 201 | 446 | 1.46e-21 | 93.2 |
MS.gene011068.t1 | MTR_8g062300 | 31.119 | 286 | 134 | 10 | 7 | 245 | 209 | 478 | 2.05e-21 | 92.8 |
MS.gene011068.t1 | MTR_8g058965 | 35.055 | 271 | 127 | 12 | 10 | 244 | 199 | 456 | 1.48e-20 | 90.1 |
MS.gene011068.t1 | MTR_2g086020 | 50.515 | 97 | 37 | 5 | 154 | 245 | 226 | 316 | 2.53e-19 | 85.5 |
MS.gene011068.t1 | MTR_8g062010 | 39.264 | 163 | 52 | 7 | 118 | 245 | 281 | 431 | 2.81e-19 | 86.3 |
MS.gene011068.t1 | MTR_8g468810 | 47.706 | 109 | 56 | 1 | 13 | 121 | 202 | 309 | 3.85e-19 | 85.1 |
MS.gene011068.t1 | MTR_8g468810 | 47.706 | 109 | 56 | 1 | 13 | 121 | 202 | 309 | 3.99e-19 | 85.1 |
MS.gene011068.t1 | MTR_8g468810 | 47.706 | 109 | 56 | 1 | 13 | 121 | 202 | 309 | 5.19e-19 | 85.1 |
MS.gene011068.t1 | MTR_8g467800 | 41.964 | 112 | 61 | 3 | 19 | 127 | 199 | 309 | 2.85e-11 | 62.8 |
MS.gene011068.t1 | MTR_4g050250 | 30.909 | 220 | 110 | 9 | 6 | 187 | 204 | 419 | 6.81e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011068.t1 | AT4G26340 | 26.250 | 240 | 135 | 7 | 35 | 244 | 192 | 419 | 4.68e-12 | 65.5 |
Find 61 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTAGAATGTCGTACTTCTT+TGG | 0.262924 | 8.3:-74147858 | None:intergenic |
CAGGAACAACCGCCTTTACT+AGG | 0.306891 | 8.3:+74147660 | MS.gene011068:CDS |
CTGACATTTATTCAATATAA+AGG | 0.313810 | 8.3:+74147726 | MS.gene011068:CDS |
ATCTTCACCGAATGTGATTC+TGG | 0.324484 | 8.3:-74147023 | None:intergenic |
GATCCGGTCTTCTTCAAGTT+TGG | 0.335955 | 8.3:-74146620 | None:intergenic |
ATGTGATTCTGGTAATGTTT+AGG | 0.351384 | 8.3:-74147012 | None:intergenic |
CTTGAGTATGTCTTGAGAAA+TGG | 0.355363 | 8.3:+74147780 | MS.gene011068:CDS |
AGGTGGGATACGAGACAATT+AGG | 0.371277 | 8.3:-74147705 | None:intergenic |
ATTTAGAGCTCATTCTTCCC+TGG | 0.374250 | 8.3:+74147371 | MS.gene011068:CDS |
GATTCGGCGCGTTTATTTCA+AGG | 0.390692 | 8.3:-74146982 | None:intergenic |
ACTAATTTGCCAAAGGCCTC+TGG | 0.392103 | 8.3:+74147888 | MS.gene011068:CDS |
CGCTAAAGAGGTTGTGTGAA+TGG | 0.407659 | 8.3:-74147120 | None:intergenic |
TAGCTATTCCGCGCGGAGCT+TGG | 0.408183 | 8.3:+74146892 | MS.gene011068:CDS |
TGGCACATTCCAGAGGCCTT+TGG | 0.416819 | 8.3:-74147897 | None:intergenic |
TTTAGAGCTCATTCTTCCCT+GGG | 0.425493 | 8.3:+74147372 | MS.gene011068:CDS |
AATGTCATTCCCAAGTCGTT+TGG | 0.429003 | 8.3:+74147088 | MS.gene011068:CDS |
CTAAGTTCAAGAATTTCAAT+AGG | 0.430691 | 8.3:-74146872 | None:intergenic |
AACCTCTTTAGCGCGCTCTC+GGG | 0.435792 | 8.3:+74147130 | MS.gene011068:CDS |
GCGTCCCACCTTCCTTGAAA+AGG | 0.452173 | 8.3:+74146924 | MS.gene011068:CDS |
CAACCTCTTTAGCGCGCTCT+CGG | 0.459572 | 8.3:+74147129 | MS.gene011068:CDS |
ATGTTTAGGTACTCAAGATT+CGG | 0.461645 | 8.3:-74146998 | None:intergenic |
CTTTATATTGAATAAATGTC+AGG | 0.470490 | 8.3:-74147725 | None:intergenic |
TCAACATTGAGAATGTCGTT+GGG | 0.471149 | 8.3:+74146954 | MS.gene011068:CDS |
TTATTCAATATAAAGGATGC+CGG | 0.475689 | 8.3:+74147733 | MS.gene011068:CDS |
CCAACTTACATTTGATCCAT+AGG | 0.477751 | 8.3:+74147917 | MS.gene011068:CDS |
ATCAACATTGAGAATGTCGT+TGG | 0.479222 | 8.3:+74146953 | MS.gene011068:CDS |
TATTCAATATAAAGGATGCC+GGG | 0.487742 | 8.3:+74147734 | MS.gene011068:CDS |
GACAATGGAACCAAACGACT+TGG | 0.491271 | 8.3:-74147098 | None:intergenic |
TCCCCGAGAGCGCGCTAAAG+AGG | 0.500822 | 8.3:-74147132 | None:intergenic |
GTTCAAGAATTTCAATAGGT+GGG | 0.502262 | 8.3:-74146868 | None:intergenic |
GATTGTTTCTGATCTGCAAT+GGG | 0.508315 | 8.3:+74147821 | MS.gene011068:CDS |
CCTATGGATCAAATGTAAGT+TGG | 0.519675 | 8.3:-74147917 | None:intergenic |
CATCTGGTAAATTACTGATC+CGG | 0.532057 | 8.3:-74146636 | None:intergenic |
AGTTCAAGAATTTCAATAGG+TGG | 0.536520 | 8.3:-74146869 | None:intergenic |
TGCAAATCCCACCCTAGTAA+AGG | 0.538665 | 8.3:-74147672 | None:intergenic |
AACATTACCAGAATCACATT+CGG | 0.539367 | 8.3:+74147016 | MS.gene011068:CDS |
TGATTGTTTCTGATCTGCAA+TGG | 0.557749 | 8.3:+74147820 | MS.gene011068:CDS |
AGGAACAACCGCCTTTACTA+GGG | 0.563791 | 8.3:+74147661 | MS.gene011068:CDS |
ACCTCTTTAGCGCGCTCTCG+GGG | 0.565356 | 8.3:+74147131 | MS.gene011068:CDS |
ACTCCAAACTTGAAGAAGAC+CGG | 0.566768 | 8.3:+74146617 | MS.gene011068:CDS |
TATATTGAATAAATGTCAGG+TGG | 0.572224 | 8.3:-74147722 | None:intergenic |
AAGATTAACTAATTTGCCAA+AGG | 0.577927 | 8.3:+74147881 | MS.gene011068:CDS |
ACGAGACAATTAGGAACACT+TGG | 0.582954 | 8.3:-74147696 | None:intergenic |
AACAACCGCCTTTACTAGGG+TGG | 0.587025 | 8.3:+74147664 | MS.gene011068:CDS |
TGGGATCACGGAGTGGAGCA+AGG | 0.591267 | 8.3:-74146849 | None:intergenic |
AATTTCAATAGGTGGGATCA+CGG | 0.594547 | 8.3:-74146861 | None:intergenic |
ACAACCGCCTTTACTAGGGT+GGG | 0.595953 | 8.3:+74147665 | MS.gene011068:CDS |
ACAATGGAACCAAACGACTT+GGG | 0.603127 | 8.3:-74147097 | None:intergenic |
GTACAACTTGCACAATGTAG+TGG | 0.609839 | 8.3:+74147054 | MS.gene011068:CDS |
ACACCTCATCTGAAAACCCC+CGG | 0.611178 | 8.3:-74147752 | None:intergenic |
GTGGACAAACAGTGGCTGCT+TGG | 0.613985 | 8.3:+74147304 | MS.gene011068:intron |
ATTCAATATAAAGGATGCCG+GGG | 0.621094 | 8.3:+74147735 | MS.gene011068:CDS |
ATATTGAATAAATGTCAGGT+GGG | 0.635935 | 8.3:-74147721 | None:intergenic |
GTTGAGTCATTCAACAACCA+AGG | 0.638649 | 8.3:+74147168 | MS.gene011068:CDS |
CAACATTGAGAATGTCGTTG+GGG | 0.642421 | 8.3:+74146955 | MS.gene011068:CDS |
GAGGTTGTGTGAATGGACAA+TGG | 0.657698 | 8.3:-74147113 | None:intergenic |
CAATAGGTGGGATCACGGAG+TGG | 0.662887 | 8.3:-74146856 | None:intergenic |
TGTAAGTTGGCACATTCCAG+AGG | 0.679400 | 8.3:-74147904 | None:intergenic |
AAATCCCACCCTAGTAAAGG+CGG | 0.683605 | 8.3:-74147669 | None:intergenic |
TTCAATATAAAGGATGCCGG+GGG | 0.684881 | 8.3:+74147736 | MS.gene011068:CDS |
TTGAACTTAGCTATTCCGCG+CGG | 0.769429 | 8.3:+74146885 | MS.gene011068:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATCTATTTCATTAAAATT+GGG | - | chr8.3:74147533-74147552 | None:intergenic | 10.0% |
!! | AAAAATCAAAAATTTAACCT+TGG | - | chr8.3:74147188-74147207 | None:intergenic | 15.0% |
!! | AATCATGATTCATTTATATA+TGG | + | chr8.3:74147245-74147264 | MS.gene011068:intron | 15.0% |
!! | GTAATCTATTTCATTAAAAT+TGG | - | chr8.3:74147534-74147553 | None:intergenic | 15.0% |
!! | CTGACATTTATTCAATATAA+AGG | + | chr8.3:74147726-74147745 | MS.gene011068:CDS | 20.0% |
!! | CTTTATATTGAATAAATGTC+AGG | - | chr8.3:74147728-74147747 | None:intergenic | 20.0% |
! | ATATTGAATAAATGTCAGGT+GGG | - | chr8.3:74147724-74147743 | None:intergenic | 25.0% |
! | ATTCTTGAAAAAGTAGATTG+TGG | - | chr8.3:74147336-74147355 | None:intergenic | 25.0% |
! | CTAAGTTCAAGAATTTCAAT+AGG | - | chr8.3:74146875-74146894 | None:intergenic | 25.0% |
! | TATATTGAATAAATGTCAGG+TGG | - | chr8.3:74147725-74147744 | None:intergenic | 25.0% |
! | TTATTCAATATAAAGGATGC+CGG | + | chr8.3:74147733-74147752 | MS.gene011068:CDS | 25.0% |
!! | AAGATTAACTAATTTGCCAA+AGG | + | chr8.3:74147881-74147900 | MS.gene011068:CDS | 25.0% |
AACATTACCAGAATCACATT+CGG | + | chr8.3:74147016-74147035 | MS.gene011068:CDS | 30.0% | |
AGTTCAAGAATTTCAATAGG+TGG | - | chr8.3:74146872-74146891 | None:intergenic | 30.0% | |
ATGTTTAGGTACTCAAGATT+CGG | - | chr8.3:74147001-74147020 | None:intergenic | 30.0% | |
GGTTTAATCCAACCTTAATT+TGG | + | chr8.3:74147472-74147491 | MS.gene011068:intron | 30.0% | |
GTTCAAGAATTTCAATAGGT+GGG | - | chr8.3:74146871-74146890 | None:intergenic | 30.0% | |
TATTCAATATAAAGGATGCC+GGG | + | chr8.3:74147734-74147753 | MS.gene011068:CDS | 30.0% | |
! | ATGTGATTCTGGTAATGTTT+AGG | - | chr8.3:74147015-74147034 | None:intergenic | 30.0% |
! | CTAATTACTACATGATAACG+TGG | + | chr8.3:74147285-74147304 | MS.gene011068:intron | 30.0% |
! | TTTAGAATGTCGTACTTCTT+TGG | - | chr8.3:74147861-74147880 | None:intergenic | 30.0% |
!! | ATTTTCAACCTTTTCAAGGA+AGG | - | chr8.3:74146935-74146954 | None:intergenic | 30.0% |
!! | GTTGATTTTCAACCTTTTCA+AGG | - | chr8.3:74146939-74146958 | None:intergenic | 30.0% |
AATTTCAATAGGTGGGATCA+CGG | - | chr8.3:74146864-74146883 | None:intergenic | 35.0% | |
AGAGAATTGGATTTAACCCA+GGG | - | chr8.3:74147391-74147410 | None:intergenic | 35.0% | |
ATACTTCAGAATGATGAGGT+TGG | + | chr8.3:74147451-74147470 | MS.gene011068:intron | 35.0% | |
ATCAACATTGAGAATGTCGT+TGG | + | chr8.3:74146953-74146972 | MS.gene011068:CDS | 35.0% | |
ATTCAATATAAAGGATGCCG+GGG | + | chr8.3:74147735-74147754 | MS.gene011068:CDS | 35.0% | |
CATCTGGTAAATTACTGATC+CGG | - | chr8.3:74146639-74146658 | None:intergenic | 35.0% | |
CTTGAGTATGTCTTGAGAAA+TGG | + | chr8.3:74147780-74147799 | MS.gene011068:CDS | 35.0% | |
CTTGTAGTTGTTCGTCATAT+TGG | - | chr8.3:74146789-74146808 | None:intergenic | 35.0% | |
TAGAGAATTGGATTTAACCC+AGG | - | chr8.3:74147392-74147411 | None:intergenic | 35.0% | |
TAGTTGTTCGTCATATTGGT+GGG | - | chr8.3:74146785-74146804 | None:intergenic | 35.0% | |
TCAACATTGAGAATGTCGTT+GGG | + | chr8.3:74146954-74146973 | MS.gene011068:CDS | 35.0% | |
TCTCATACTTCAGAATGATG+AGG | + | chr8.3:74147447-74147466 | MS.gene011068:intron | 35.0% | |
TCTTTACGTTCTCAACTTCT+CGG | + | chr8.3:74146753-74146772 | MS.gene011068:intron | 35.0% | |
!! | GATTGTTTCTGATCTGCAAT+GGG | + | chr8.3:74147821-74147840 | MS.gene011068:CDS | 35.0% |
!! | TGATTGTTTCTGATCTGCAA+TGG | + | chr8.3:74147820-74147839 | MS.gene011068:CDS | 35.0% |
AAGCAAGCTGACTAGAGAAT+TGG | - | chr8.3:74147404-74147423 | None:intergenic | 40.0% | |
AATGTCATTCCCAAGTCGTT+TGG | + | chr8.3:74147088-74147107 | MS.gene011068:CDS | 40.0% | |
ACAATGGAACCAAACGACTT+GGG | - | chr8.3:74147100-74147119 | None:intergenic | 40.0% | |
ACGAGACAATTAGGAACACT+TGG | - | chr8.3:74147699-74147718 | None:intergenic | 40.0% | |
ACTCCAAACTTGAAGAAGAC+CGG | + | chr8.3:74146617-74146636 | MS.gene011068:CDS | 40.0% | |
AGTATGAGAACTTGAAGCAG+AGG | - | chr8.3:74147436-74147455 | None:intergenic | 40.0% | |
ATCTTCACCGAATGTGATTC+TGG | - | chr8.3:74147026-74147045 | None:intergenic | 40.0% | |
CAACATTGAGAATGTCGTTG+GGG | + | chr8.3:74146955-74146974 | MS.gene011068:CDS | 40.0% | |
CACACACACACACCAAATTA+AGG | - | chr8.3:74147487-74147506 | None:intergenic | 40.0% | |
CACACACACCAAATTAAGGT+TGG | - | chr8.3:74147483-74147502 | None:intergenic | 40.0% | |
CGGATCAGTAATTTACCAGA+TGG | + | chr8.3:74146637-74146656 | MS.gene011068:intron | 40.0% | |
GTACAACTTGCACAATGTAG+TGG | + | chr8.3:74147054-74147073 | MS.gene011068:CDS | 40.0% | |
GTAGTTGTTCGTCATATTGG+TGG | - | chr8.3:74146786-74146805 | None:intergenic | 40.0% | |
GTTGAGTCATTCAACAACCA+AGG | + | chr8.3:74147168-74147187 | MS.gene011068:CDS | 40.0% | |
TCGGGAGTAATGATAAGATC+TGG | - | chr8.3:74146675-74146694 | None:intergenic | 40.0% | |
TTCAATATAAAGGATGCCGG+GGG | + | chr8.3:74147736-74147755 | MS.gene011068:CDS | 40.0% | |
! | ATGATAACGTGGACAAACAG+TGG | + | chr8.3:74147296-74147315 | MS.gene011068:intron | 40.0% |
! | ATTTAGAGCTCATTCTTCCC+TGG | + | chr8.3:74147371-74147390 | MS.gene011068:CDS | 40.0% |
! | TTTAGAGCTCATTCTTCCCT+GGG | + | chr8.3:74147372-74147391 | MS.gene011068:CDS | 40.0% |
!! | TCAACCTTTTCAAGGAAGGT+GGG | - | chr8.3:74146931-74146950 | None:intergenic | 40.0% |
!! | TGATCTGCAATGGGTTTTGA+AGG | + | chr8.3:74147830-74147849 | MS.gene011068:CDS | 40.0% |
!! | TTCAACCTTTTCAAGGAAGG+TGG | - | chr8.3:74146932-74146951 | None:intergenic | 40.0% |
AAATCCCACCCTAGTAAAGG+CGG | - | chr8.3:74147672-74147691 | None:intergenic | 45.0% | |
AGGAACAACCGCCTTTACTA+GGG | + | chr8.3:74147661-74147680 | MS.gene011068:CDS | 45.0% | |
AGGTGGGATACGAGACAATT+AGG | - | chr8.3:74147708-74147727 | None:intergenic | 45.0% | |
ATTACTCCCGACCAAAGATG+CGG | + | chr8.3:74146684-74146703 | MS.gene011068:intron | 45.0% | |
CGCTAAAGAGGTTGTGTGAA+TGG | - | chr8.3:74147123-74147142 | None:intergenic | 45.0% | |
GACAATGGAACCAAACGACT+TGG | - | chr8.3:74147101-74147120 | None:intergenic | 45.0% | |
GAGGTTGTGTGAATGGACAA+TGG | - | chr8.3:74147116-74147135 | None:intergenic | 45.0% | |
GATTCGGCGCGTTTATTTCA+AGG | - | chr8.3:74146985-74147004 | None:intergenic | 45.0% | |
GTTGTTCCTGCTGGTAACAA+AGG | - | chr8.3:74147650-74147669 | None:intergenic | 45.0% | |
TCAAGTCCTTTGTTACCAGC+AGG | + | chr8.3:74147641-74147660 | MS.gene011068:intron | 45.0% | |
TGCAAATCCCACCCTAGTAA+AGG | - | chr8.3:74147675-74147694 | None:intergenic | 45.0% | |
TTGAACTTAGCTATTCCGCG+CGG | + | chr8.3:74146885-74146904 | MS.gene011068:CDS | 45.0% | |
! | ACTAATTTGCCAAAGGCCTC+TGG | + | chr8.3:74147888-74147907 | MS.gene011068:CDS | 45.0% |
! | GATCCGGTCTTCTTCAAGTT+TGG | - | chr8.3:74146623-74146642 | None:intergenic | 45.0% |
! | TGTAAGTTGGCACATTCCAG+AGG | - | chr8.3:74147907-74147926 | None:intergenic | 45.0% |
!!! | TCTGCAATGGGTTTTGAAGG+TGG | + | chr8.3:74147833-74147852 | MS.gene011068:CDS | 45.0% |
AACAACCGCCTTTACTAGGG+TGG | + | chr8.3:74147664-74147683 | MS.gene011068:CDS | 50.0% | |
ACAACCGCCTTTACTAGGGT+GGG | + | chr8.3:74147665-74147684 | MS.gene011068:CDS | 50.0% | |
ACACCTCATCTGAAAACCCC+CGG | - | chr8.3:74147755-74147774 | None:intergenic | 50.0% | |
CAGGAACAACCGCCTTTACT+AGG | + | chr8.3:74147660-74147679 | MS.gene011068:CDS | 50.0% | |
! | GATTTTATCCAAGCTCCGCG+CGG | - | chr8.3:74146903-74146922 | None:intergenic | 50.0% |
!! | TGGTTGATGAGCAGACCATC+TGG | - | chr8.3:74146655-74146674 | None:intergenic | 50.0% |
AACCTCTTTAGCGCGCTCTC+GGG | + | chr8.3:74147130-74147149 | MS.gene011068:CDS | 55.0% | |
ACCAAAGATGCGGTTGCCAC+TGG | + | chr8.3:74146694-74146713 | MS.gene011068:intron | 55.0% | |
CAACCTCTTTAGCGCGCTCT+CGG | + | chr8.3:74147129-74147148 | MS.gene011068:CDS | 55.0% | |
CAATAGGTGGGATCACGGAG+TGG | - | chr8.3:74146859-74146878 | None:intergenic | 55.0% | |
GCGTCCCACCTTCCTTGAAA+AGG | + | chr8.3:74146924-74146943 | MS.gene011068:CDS | 55.0% | |
GTAAAGGCGGTTGTTCCTGC+TGG | - | chr8.3:74147659-74147678 | None:intergenic | 55.0% | |
GTGGACAAACAGTGGCTGCT+TGG | + | chr8.3:74147304-74147323 | MS.gene011068:intron | 55.0% | |
GTGGCAACCGCATCTTTGGT+CGG | - | chr8.3:74146694-74146713 | None:intergenic | 55.0% | |
TGGCAACCGCATCTTTGGTC+GGG | - | chr8.3:74146693-74146712 | None:intergenic | 55.0% | |
TGGCACATTCCAGAGGCCTT+TGG | - | chr8.3:74147900-74147919 | None:intergenic | 55.0% | |
! | ATGCCGGGGGTTTTCAGATG+AGG | + | chr8.3:74147749-74147768 | MS.gene011068:CDS | 55.0% |
ACCTCTTTAGCGCGCTCTCG+GGG | + | chr8.3:74147131-74147150 | MS.gene011068:CDS | 60.0% | |
GCCAGTGGCAACCGCATCTT+TGG | - | chr8.3:74146698-74146717 | None:intergenic | 60.0% | |
GCTTCCAAAGCTGTCGCCAC+CGG | - | chr8.3:74146732-74146751 | None:intergenic | 60.0% | |
TAGCTATTCCGCGCGGAGCT+TGG | + | chr8.3:74146892-74146911 | MS.gene011068:CDS | 60.0% | |
TGGGATCACGGAGTGGAGCA+AGG | - | chr8.3:74146852-74146871 | None:intergenic | 60.0% | |
CCACTGGCCGTCTTTCTCGC+CGG | + | chr8.3:74146710-74146729 | MS.gene011068:intron | 65.0% | |
GTCGCCACCGGCGAGAAAGA+CGG | - | chr8.3:74146720-74146739 | None:intergenic | 65.0% | |
! | TCCCCGAGAGCGCGCTAAAG+AGG | - | chr8.3:74147135-74147154 | None:intergenic | 65.0% |
CCGGCGAGAAAGACGGCCAG+TGG | - | chr8.3:74146713-74146732 | None:intergenic | 70.0% | |
CTCGCCGGTGGCGACAGCTT+TGG | + | chr8.3:74146725-74146744 | MS.gene011068:intron | 70.0% | |
CTGGCCGTCTTTCTCGCCGG+TGG | + | chr8.3:74146713-74146732 | MS.gene011068:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 74146607 | 74147938 | 74146607 | ID=MS.gene011068 |
chr8.3 | mRNA | 74146607 | 74147938 | 74146607 | ID=MS.gene011068.t1;Parent=MS.gene011068 |
chr8.3 | exon | 74146607 | 74146643 | 74146607 | ID=MS.gene011068.t1.exon1;Parent=MS.gene011068.t1 |
chr8.3 | CDS | 74146607 | 74146643 | 74146607 | ID=cds.MS.gene011068.t1;Parent=MS.gene011068.t1 |
chr8.3 | exon | 74146846 | 74147189 | 74146846 | ID=MS.gene011068.t1.exon2;Parent=MS.gene011068.t1 |
chr8.3 | CDS | 74146846 | 74147189 | 74146846 | ID=cds.MS.gene011068.t1;Parent=MS.gene011068.t1 |
chr8.3 | exon | 74147316 | 74147393 | 74147316 | ID=MS.gene011068.t1.exon3;Parent=MS.gene011068.t1 |
chr8.3 | CDS | 74147316 | 74147393 | 74147316 | ID=cds.MS.gene011068.t1;Parent=MS.gene011068.t1 |
chr8.3 | exon | 74147660 | 74147938 | 74147660 | ID=MS.gene011068.t1.exon4;Parent=MS.gene011068.t1 |
chr8.3 | CDS | 74147660 | 74147938 | 74147660 | ID=cds.MS.gene011068.t1;Parent=MS.gene011068.t1 |
Gene Sequence |
Protein sequence |