Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072235.t1 | AET01504.2 | 65.8 | 278 | 91 | 3 | 3 | 279 | 177 | 451 | 8.70E-91 | 343.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072235.t1 | Q8H1R7 | 27.2 | 287 | 187 | 8 | 2 | 279 | 146 | 419 | 4.9e-18 | 93.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072235.t1 | G7LGM4 | 65.8 | 278 | 91 | 3 | 3 | 279 | 177 | 451 | 6.3e-91 | 343.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072235.t1 | MTR_4g024710 | 65.591 | 279 | 92 | 3 | 2 | 279 | 72 | 347 | 5.04e-117 | 340 |
MS.gene072235.t1 | MTR_8g014260 | 65.827 | 278 | 91 | 3 | 3 | 279 | 177 | 451 | 2.66e-116 | 342 |
MS.gene072235.t1 | MTR_4g024745 | 64.504 | 262 | 89 | 3 | 2 | 262 | 26 | 284 | 7.74e-103 | 301 |
MS.gene072235.t1 | MTR_8g445780 | 64.935 | 231 | 77 | 2 | 3 | 233 | 164 | 390 | 6.60e-95 | 285 |
MS.gene072235.t1 | MTR_8g014210 | 63.636 | 231 | 83 | 1 | 49 | 279 | 2 | 231 | 1.08e-94 | 279 |
MS.gene072235.t1 | MTR_8g077460 | 65.517 | 145 | 50 | 0 | 135 | 279 | 231 | 375 | 2.17e-58 | 191 |
MS.gene072235.t1 | MTR_8g077460 | 52.381 | 63 | 27 | 1 | 3 | 65 | 170 | 229 | 5.68e-11 | 62.8 |
MS.gene072235.t1 | MTR_5g092960 | 44.689 | 273 | 132 | 7 | 21 | 278 | 193 | 461 | 1.05e-57 | 191 |
MS.gene072235.t1 | MTR_8g062270 | 43.599 | 289 | 143 | 9 | 1 | 278 | 174 | 453 | 4.29e-57 | 189 |
MS.gene072235.t1 | MTR_2g083840 | 42.908 | 282 | 149 | 7 | 5 | 279 | 181 | 457 | 1.18e-55 | 186 |
MS.gene072235.t1 | MTR_8g468810 | 41.176 | 289 | 151 | 8 | 3 | 279 | 182 | 463 | 7.78e-54 | 181 |
MS.gene072235.t1 | MTR_8g468840 | 47.059 | 255 | 125 | 6 | 3 | 250 | 172 | 423 | 6.98e-53 | 178 |
MS.gene072235.t1 | MTR_8g058970 | 42.808 | 292 | 147 | 9 | 2 | 279 | 192 | 477 | 4.19e-51 | 174 |
MS.gene072235.t1 | MTR_8g467800 | 41.356 | 295 | 145 | 11 | 3 | 279 | 169 | 453 | 1.08e-49 | 170 |
MS.gene072235.t1 | MTR_8g468760 | 38.246 | 285 | 127 | 9 | 5 | 278 | 172 | 418 | 1.86e-41 | 147 |
MS.gene072235.t1 | MTR_8g014160 | 36.299 | 281 | 118 | 6 | 3 | 279 | 202 | 425 | 5.47e-41 | 146 |
MS.gene072235.t1 | MTR_4g032730 | 38.487 | 304 | 148 | 10 | 3 | 278 | 174 | 466 | 3.61e-39 | 142 |
MS.gene072235.t1 | MTR_8g058965 | 36.860 | 293 | 166 | 7 | 2 | 279 | 168 | 456 | 4.45e-39 | 142 |
MS.gene072235.t1 | MTR_8g469020 | 36.149 | 296 | 165 | 11 | 2 | 279 | 162 | 451 | 1.92e-38 | 140 |
MS.gene072235.t1 | MTR_8g062310 | 35.336 | 283 | 154 | 10 | 3 | 279 | 169 | 428 | 3.96e-35 | 131 |
MS.gene072235.t1 | MTR_8g062010 | 35.563 | 284 | 157 | 11 | 5 | 279 | 164 | 430 | 4.40e-34 | 128 |
MS.gene072235.t1 | MTR_8g070950 | 35.531 | 273 | 151 | 10 | 18 | 279 | 176 | 434 | 5.44e-34 | 128 |
MS.gene072235.t1 | MTR_8g014230 | 65.060 | 83 | 29 | 0 | 191 | 273 | 17 | 99 | 6.17e-33 | 117 |
MS.gene072235.t1 | MTR_8g062080 | 34.138 | 290 | 158 | 12 | 2 | 279 | 177 | 445 | 2.00e-32 | 124 |
MS.gene072235.t1 | MTR_5g092960 | 45.304 | 181 | 88 | 4 | 21 | 192 | 193 | 371 | 1.12e-31 | 121 |
MS.gene072235.t1 | MTR_8g468810 | 40.816 | 196 | 104 | 5 | 3 | 192 | 182 | 371 | 4.50e-30 | 116 |
MS.gene072235.t1 | MTR_8g062300 | 34.426 | 305 | 160 | 13 | 1 | 279 | 187 | 477 | 1.11e-29 | 117 |
MS.gene072235.t1 | MTR_2g086020 | 53.509 | 114 | 50 | 3 | 169 | 279 | 202 | 315 | 7.76e-28 | 109 |
MS.gene072235.t1 | MTR_4g050250 | 34.252 | 254 | 123 | 9 | 2 | 225 | 180 | 419 | 1.71e-23 | 99.4 |
MS.gene072235.t1 | MTR_8g468810 | 41.667 | 132 | 73 | 2 | 3 | 134 | 182 | 309 | 7.39e-21 | 90.5 |
MS.gene072235.t1 | MTR_8g468810 | 41.667 | 132 | 73 | 2 | 3 | 134 | 182 | 309 | 7.76e-21 | 90.9 |
MS.gene072235.t1 | MTR_8g468810 | 41.667 | 132 | 73 | 2 | 3 | 134 | 182 | 309 | 9.65e-21 | 90.9 |
MS.gene072235.t1 | MTR_8g467800 | 43.919 | 148 | 67 | 7 | 3 | 141 | 169 | 309 | 7.04e-17 | 79.7 |
MS.gene072235.t1 | MTR_5g084070 | 30.342 | 234 | 148 | 10 | 21 | 247 | 169 | 394 | 6.10e-15 | 74.7 |
MS.gene072235.t1 | MTR_8g467790 | 31.169 | 231 | 103 | 12 | 2 | 221 | 305 | 490 | 3.39e-13 | 69.7 |
MS.gene072235.t1 | MTR_7g098510 | 36.364 | 110 | 67 | 2 | 173 | 279 | 282 | 391 | 3.21e-12 | 66.6 |
MS.gene072235.t1 | MTR_1g041245 | 36.697 | 109 | 64 | 1 | 176 | 279 | 278 | 386 | 4.60e-12 | 65.9 |
MS.gene072235.t1 | MTR_7g032380 | 31.776 | 107 | 70 | 1 | 176 | 279 | 250 | 356 | 1.57e-11 | 64.3 |
MS.gene072235.t1 | MTR_7g034115 | 26.957 | 230 | 145 | 5 | 65 | 271 | 146 | 375 | 2.53e-11 | 63.9 |
MS.gene072235.t1 | MTR_5g080710 | 27.881 | 269 | 171 | 12 | 22 | 275 | 196 | 456 | 5.47e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072235.t1 | AT4G26340 | 27.526 | 287 | 186 | 8 | 2 | 279 | 146 | 419 | 1.53e-20 | 90.9 |
MS.gene072235.t1 | AT3G54910 | 28.622 | 283 | 175 | 9 | 5 | 279 | 110 | 373 | 3.92e-17 | 80.9 |
MS.gene072235.t1 | AT3G54910 | 28.622 | 283 | 175 | 9 | 5 | 279 | 110 | 373 | 3.92e-17 | 80.9 |
MS.gene072235.t1 | AT3G54910 | 28.622 | 283 | 175 | 9 | 5 | 279 | 110 | 373 | 3.92e-17 | 80.9 |
MS.gene072235.t1 | AT1G32375 | 26.962 | 293 | 180 | 12 | 2 | 279 | 149 | 422 | 1.54e-15 | 76.6 |
MS.gene072235.t1 | AT1G32375 | 26.962 | 293 | 180 | 12 | 2 | 279 | 149 | 422 | 1.54e-15 | 76.6 |
MS.gene072235.t1 | AT5G56800 | 27.551 | 294 | 166 | 12 | 4 | 278 | 78 | 343 | 9.36e-15 | 73.6 |
MS.gene072235.t1 | AT3G26920 | 28.374 | 289 | 179 | 11 | 3 | 278 | 66 | 339 | 1.42e-14 | 73.2 |
MS.gene072235.t1 | AT3G26920 | 28.374 | 289 | 179 | 11 | 3 | 278 | 66 | 339 | 1.42e-14 | 73.2 |
MS.gene072235.t1 | AT4G10420 | 25.524 | 286 | 184 | 13 | 3 | 278 | 55 | 321 | 3.88e-14 | 71.6 |
MS.gene072235.t1 | AT5G56420 | 27.397 | 292 | 172 | 13 | 4 | 279 | 155 | 422 | 2.73e-13 | 69.7 |
MS.gene072235.t1 | AT5G56420 | 27.397 | 292 | 172 | 13 | 4 | 279 | 155 | 422 | 2.73e-13 | 69.7 |
MS.gene072235.t1 | AT5G56420 | 27.397 | 292 | 172 | 13 | 4 | 279 | 155 | 422 | 2.73e-13 | 69.7 |
MS.gene072235.t1 | AT3G52680 | 29.252 | 294 | 170 | 14 | 5 | 278 | 169 | 444 | 5.01e-13 | 68.9 |
MS.gene072235.t1 | AT4G00160 | 28.620 | 297 | 173 | 14 | 3 | 278 | 163 | 441 | 1.60e-12 | 67.8 |
MS.gene072235.t1 | AT3G49030 | 28.028 | 289 | 180 | 11 | 3 | 278 | 167 | 440 | 2.96e-12 | 66.6 |
MS.gene072235.t1 | AT4G10400 | 25.614 | 285 | 179 | 13 | 3 | 278 | 148 | 408 | 3.61e-11 | 63.5 |
MS.gene072235.t1 | AT4G10400 | 25.614 | 285 | 179 | 13 | 3 | 278 | 148 | 408 | 3.61e-11 | 63.5 |
MS.gene072235.t1 | AT4G10400 | 25.614 | 285 | 179 | 13 | 3 | 278 | 148 | 408 | 3.61e-11 | 63.5 |
Find 56 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAATTTGAAATCCATTCTT+TGG | 0.213271 | 8.3:-74385286 | MS.gene072235:CDS |
AATCCATTCTTTGGGTTATC+TGG | 0.229805 | 8.3:-74385277 | MS.gene072235:CDS |
ATTCAATTTGAAGGATTTCT+TGG | 0.248444 | 8.3:-74384347 | MS.gene072235:CDS |
AAACATCACTGAATTTGTTT+TGG | 0.271901 | 8.3:+74385064 | None:intergenic |
CTCCTCGGCGCTCTCTCTGC+TGG | 0.295657 | 8.3:-74384955 | MS.gene072235:CDS |
GGCAAACTTTGTCTGAGCTT+TGG | 0.296523 | 8.3:+74385184 | None:intergenic |
AGATGGGATATAAGACATTT+AGG | 0.327868 | 8.3:+74384377 | None:intergenic |
AAATCCTTCAAATTGAATTA+AGG | 0.336116 | 8.3:+74384352 | None:intergenic |
CTGCTGGGACAAAACTTCTA+TGG | 0.357303 | 8.3:-74384939 | MS.gene072235:CDS |
AAGCAAGCAGAGCAGAGAAT+TGG | 0.362262 | 8.3:+74384679 | None:intergenic |
GATCTCCTTCCCTCGTCGTT+TGG | 0.365317 | 8.3:-74385000 | MS.gene072235:CDS |
CAATTTGAAATCCATTCTTT+GGG | 0.370180 | 8.3:-74385285 | MS.gene072235:CDS |
ATCGTTATTAAACATGAAGT+TGG | 0.391412 | 8.3:-74385135 | MS.gene072235:CDS |
CTGACCTTAATTCAATTTGA+AGG | 0.392055 | 8.3:-74384356 | MS.gene072235:CDS |
GAATATTGTACTTCACCATT+AGG | 0.396744 | 8.3:+74384237 | None:intergenic |
CGCCGAGGAGTTTGACTAAT+GGG | 0.400065 | 8.3:+74384968 | None:intergenic |
TGTGGAGCCCATCCTAAAAT+TGG | 0.402676 | 8.3:+74384410 | None:intergenic |
TGATATTTCTGTGGACCTAA+TGG | 0.409765 | 8.3:-74384252 | MS.gene072235:CDS |
TCCTCGGCGCTCTCTCTGCT+GGG | 0.433017 | 8.3:-74384954 | MS.gene072235:CDS |
GTTTAGAGCTCATTCTTCCA+TGG | 0.469801 | 8.3:-74384709 | MS.gene072235:CDS |
CAAATTGAATTAAGGTCAGA+TGG | 0.471591 | 8.3:+74384360 | None:intergenic |
GCGCCGAGGAGTTTGACTAA+TGG | 0.477807 | 8.3:+74384967 | None:intergenic |
GCCTCCCACCTACCTTGAAA+AGG | 0.482061 | 8.3:-74385164 | MS.gene072235:CDS |
TTCAAGTTGGCACATTATTG+AGG | 0.489594 | 8.3:+74384187 | None:intergenic |
CTTCCAGATAACCCAAAGAA+TGG | 0.490296 | 8.3:+74385274 | None:intergenic |
TCGTTATTAAACATGAAGTT+GGG | 0.495214 | 8.3:-74385134 | MS.gene072235:CDS |
TCAACAAATGACACCTCATC+TGG | 0.509197 | 8.3:+74384320 | None:intergenic |
TTTAGAGCTCATTCTTCCAT+GGG | 0.511191 | 8.3:-74384708 | MS.gene072235:CDS |
GGGACAAAACTTCTATGGTT+GGG | 0.523080 | 8.3:-74384934 | MS.gene072235:CDS |
ATTAAGAGAACTTGAAGCAT+AGG | 0.527792 | 8.3:+74384647 | None:intergenic |
CGGAACCAAACGACGAGGGA+AGG | 0.540506 | 8.3:+74384995 | None:intergenic |
TGGGACAAAACTTCTATGGT+TGG | 0.544136 | 8.3:-74384935 | MS.gene072235:CDS |
CAACTCAGTCAAATTCAAGT+TGG | 0.550200 | 8.3:+74384174 | None:intergenic |
ATGCTAAGGAACTTAAGATC+GGG | 0.560763 | 8.3:+74385090 | None:intergenic |
AATGCTAAGGAACTTAAGAT+CGG | 0.564956 | 8.3:+74385089 | None:intergenic |
ATAAGACATTTAGGAACACT+TGG | 0.572853 | 8.3:+74384386 | None:intergenic |
CATTTAGGAACACTTGGCTG+TGG | 0.572984 | 8.3:+74384392 | None:intergenic |
GATTATTGCTGATATTTCTG+TGG | 0.583156 | 8.3:-74384261 | MS.gene072235:CDS |
AAGATTATCGAAAGTGCGAA+GGG | 0.595018 | 8.3:-74384210 | MS.gene072235:CDS |
GTCCCATTAGTCAAACTCCT+CGG | 0.598203 | 8.3:-74384970 | MS.gene072235:CDS |
AATTGCAGCAGCTTCAGTGA+TGG | 0.598966 | 8.3:+74385303 | None:intergenic |
TCTTCTGTGAATGCAATCCT+CGG | 0.604515 | 8.3:-74385249 | MS.gene072235:CDS |
GTCGACAAACAGTGGCTGCT+AGG | 0.605424 | 8.3:-74384776 | MS.gene072235:intron |
GAAGATTATCGAAAGTGCGA+AGG | 0.605762 | 8.3:-74384211 | MS.gene072235:CDS |
ATTTCTTGGATTACCAGATG+AGG | 0.609098 | 8.3:-74384333 | MS.gene072235:CDS |
AAATTGAATTAAGGTCAGAT+GGG | 0.614914 | 8.3:+74384361 | None:intergenic |
TCTCTTAATTCAAAACAACA+AGG | 0.655812 | 8.3:-74384633 | MS.gene072235:intron |
AGAGAATTGGAGTTAACCCA+TGG | 0.665165 | 8.3:+74384692 | None:intergenic |
ACGACGGAACCAAACGACGA+GGG | 0.667009 | 8.3:+74384991 | None:intergenic |
GCACAACTTGCACAACGTGG+TGG | 0.668875 | 8.3:-74385034 | MS.gene072235:CDS |
TCCCAGCAGAGAGAGCGCCG+AGG | 0.686302 | 8.3:+74384953 | None:intergenic |
GTTGGGTGCTTCAACAACCA+AGG | 0.688558 | 8.3:-74384917 | MS.gene072235:intron |
GACGACGGAACCAAACGACG+AGG | 0.696892 | 8.3:+74384990 | None:intergenic |
GAGTTTGACTAATGGGACGA+CGG | 0.698443 | 8.3:+74384975 | None:intergenic |
CATGCACAACTTGCACAACG+TGG | 0.698471 | 8.3:-74385037 | MS.gene072235:CDS |
TCTGTGAATGCAATCCTCGG+CGG | 0.745793 | 8.3:-74385246 | MS.gene072235:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATAGTGAAATTTTTGTAAA+AGG | + | chr8.3:74384761-74384780 | None:intergenic | 15.0% |
!! | AAATCCTTCAAATTGAATTA+AGG | + | chr8.3:74385147-74385166 | None:intergenic | 20.0% |
!! | GTAATCTATTTCATAAAAAC+TGG | + | chr8.3:74384950-74384969 | None:intergenic | 20.0% |
!! | TCATGATTTACTTATGTATA+TGG | - | chr8.3:74384660-74384679 | MS.gene072235:CDS | 20.0% |
!!! | AGATCCAAAATTTCAATTTT+TGG | + | chr8.3:74384280-74384299 | None:intergenic | 20.0% |
!!! | GATCCAAAATTTCAATTTTT+GGG | + | chr8.3:74384279-74384298 | None:intergenic | 20.0% |
! | AAATTGAATTAAGGTCAGAT+GGG | + | chr8.3:74385138-74385157 | None:intergenic | 25.0% |
! | ACTAAAATAAAACTTGACCT+TGG | + | chr8.3:74384599-74384618 | None:intergenic | 25.0% |
! | ATCGTTATTAAACATGAAGT+TGG | - | chr8.3:74384361-74384380 | MS.gene072235:CDS | 25.0% |
! | ATTCAATTTGAAGGATTTCT+TGG | - | chr8.3:74385149-74385168 | MS.gene072235:CDS | 25.0% |
! | TAGTTTCATGTGTATTTATC+CGG | - | chr8.3:74384918-74384937 | MS.gene072235:CDS | 25.0% |
! | TCGTTATTAAACATGAAGTT+GGG | - | chr8.3:74384362-74384381 | MS.gene072235:CDS | 25.0% |
! | TCTCTTAATTCAAAACAACA+AGG | - | chr8.3:74384863-74384882 | MS.gene072235:intron | 25.0% |
!! | AATTTTGGATCTTAACTTTC+AGG | - | chr8.3:74384288-74384307 | MS.gene072235:CDS | 25.0% |
!! | ATTTTGGATCTTAACTTTCA+GGG | - | chr8.3:74384289-74384308 | MS.gene072235:CDS | 25.0% |
!! | CAATTTGAAATCCATTCTTT+GGG | - | chr8.3:74384211-74384230 | MS.gene072235:CDS | 25.0% |
!!! | AAACATCACTGAATTTGTTT+TGG | + | chr8.3:74384435-74384454 | None:intergenic | 25.0% |
!!! | ATTTGTTTTGGATAATGCTA+AGG | + | chr8.3:74384423-74384442 | None:intergenic | 25.0% |
AATGCTAAGGAACTTAAGAT+CGG | + | chr8.3:74384410-74384429 | None:intergenic | 30.0% | |
AGATGGGATATAAGACATTT+AGG | + | chr8.3:74385122-74385141 | None:intergenic | 30.0% | |
ATAAGACATTTAGGAACACT+TGG | + | chr8.3:74385113-74385132 | None:intergenic | 30.0% | |
ATTAAGAGAACTTGAAGCAT+AGG | + | chr8.3:74384852-74384871 | None:intergenic | 30.0% | |
CAAATTGAATTAAGGTCAGA+TGG | + | chr8.3:74385139-74385158 | None:intergenic | 30.0% | |
CTGACCTTAATTCAATTTGA+AGG | - | chr8.3:74385140-74385159 | MS.gene072235:CDS | 30.0% | |
GAATATTGTACTTCACCATT+AGG | + | chr8.3:74385262-74385281 | None:intergenic | 30.0% | |
TAACCATGTTACATATTCAG+TGG | + | chr8.3:74385007-74385026 | None:intergenic | 30.0% | |
TCATAAAAACTGGTTAAGTC+CGG | + | chr8.3:74384940-74384959 | None:intergenic | 30.0% | |
! | CTGCCCAAAAATTGAAATTT+TGG | - | chr8.3:74384273-74384292 | MS.gene072235:CDS | 30.0% |
! | GATTATTGCTGATATTTCTG+TGG | - | chr8.3:74385235-74385254 | MS.gene072235:CDS | 30.0% |
! | GCAATTTGAAATCCATTCTT+TGG | - | chr8.3:74384210-74384229 | MS.gene072235:CDS | 30.0% |
! | TTTTGTAAAAGGTGATCACA+GGG | + | chr8.3:74384750-74384769 | None:intergenic | 30.0% |
! | TTTTTGTAAAAGGTGATCAC+AGG | + | chr8.3:74384751-74384770 | None:intergenic | 30.0% |
ACACCACTGAATATGTAACA+TGG | - | chr8.3:74385001-74385020 | MS.gene072235:CDS | 35.0% | |
ATGCTAAGGAACTTAAGATC+GGG | + | chr8.3:74384409-74384428 | None:intergenic | 35.0% | |
ATTTCTTGGATTACCAGATG+AGG | - | chr8.3:74385163-74385182 | MS.gene072235:CDS | 35.0% | |
CACATGAAACTAATACAGAC+TGG | + | chr8.3:74384910-74384929 | None:intergenic | 35.0% | |
! | AACGATTTTCAGCCTTTTCA+AGG | + | chr8.3:74384347-74384366 | None:intergenic | 35.0% |
! | AAGATTATCGAAAGTGCGAA+GGG | - | chr8.3:74385286-74385305 | MS.gene072235:CDS | 35.0% |
! | AATCCATTCTTTGGGTTATC+TGG | - | chr8.3:74384219-74384238 | MS.gene072235:CDS | 35.0% |
! | GTTGAGCATGTTTTGCAAAA+AGG | - | chr8.3:74385194-74385213 | MS.gene072235:CDS | 35.0% |
! | TGATATTTCTGTGGACCTAA+TGG | - | chr8.3:74385244-74385263 | MS.gene072235:CDS | 35.0% |
! | TTTAGAGCTCATTCTTCCAT+GGG | - | chr8.3:74384788-74384807 | MS.gene072235:intron | 35.0% |
!! | AACAGTCACCAATTTTAGGA+TGG | - | chr8.3:74385078-74385097 | MS.gene072235:CDS | 35.0% |
!! | ATTTTCAGCCTTTTCAAGGT+AGG | + | chr8.3:74384343-74384362 | None:intergenic | 35.0% |
!! | TTCAAGTTGGCACATTATTG+AGG | + | chr8.3:74385312-74385331 | None:intergenic | 35.0% |
!!! | ACAGTCACCAATTTTAGGAT+GGG | - | chr8.3:74385079-74385098 | MS.gene072235:CDS | 35.0% |
AGAGAATTGGAGTTAACCCA+TGG | + | chr8.3:74384807-74384826 | None:intergenic | 40.0% | |
CTTCCAGATAACCCAAAGAA+TGG | + | chr8.3:74384225-74384244 | None:intergenic | 40.0% | |
GGGACAAAACTTCTATGGTT+GGG | - | chr8.3:74384562-74384581 | MS.gene072235:intron | 40.0% | |
TCAACAAATGACACCTCATC+TGG | + | chr8.3:74385179-74385198 | None:intergenic | 40.0% | |
TCTTCTGTGAATGCAATCCT+CGG | - | chr8.3:74384247-74384266 | MS.gene072235:CDS | 40.0% | |
TGATTAACGTCGACAAACAG+TGG | - | chr8.3:74384712-74384731 | MS.gene072235:CDS | 40.0% | |
TGGGACAAAACTTCTATGGT+TGG | - | chr8.3:74384561-74384580 | MS.gene072235:intron | 40.0% | |
! | AAATTGGTGACTGTTCCTGT+AGG | + | chr8.3:74385073-74385092 | None:intergenic | 40.0% |
! | CAGGAACAGTCACCAATTTT+AGG | - | chr8.3:74385074-74385093 | MS.gene072235:CDS | 40.0% |
! | GAAGATTATCGAAAGTGCGA+AGG | - | chr8.3:74385285-74385304 | MS.gene072235:CDS | 40.0% |
! | GTTTAGAGCTCATTCTTCCA+TGG | - | chr8.3:74384787-74384806 | MS.gene072235:intron | 40.0% |
! | TCAAGTCTTTTGTTGCCTAC+AGG | - | chr8.3:74385055-74385074 | MS.gene072235:CDS | 40.0% |
AAGCAAGCAGAGCAGAGAAT+TGG | + | chr8.3:74384820-74384839 | None:intergenic | 45.0% | |
AATTGCAGCAGCTTCAGTGA+TGG | + | chr8.3:74384196-74384215 | None:intergenic | 45.0% | |
CATTTAGGAACACTTGGCTG+TGG | + | chr8.3:74385107-74385126 | None:intergenic | 45.0% | |
CTGCTGGGACAAAACTTCTA+TGG | - | chr8.3:74384557-74384576 | MS.gene072235:intron | 45.0% | |
GAGTTTGACTAATGGGACGA+CGG | + | chr8.3:74384524-74384543 | None:intergenic | 45.0% | |
GGCAAACTTTGTCTGAGCTT+TGG | + | chr8.3:74384315-74384334 | None:intergenic | 45.0% | |
GTCCCATTAGTCAAACTCCT+CGG | - | chr8.3:74384526-74384545 | MS.gene072235:intron | 45.0% | |
TGTGGAGCCCATCCTAAAAT+TGG | + | chr8.3:74385089-74385108 | None:intergenic | 45.0% | |
!! | TCAGCCTTTTCAAGGTAGGT+GGG | + | chr8.3:74384339-74384358 | None:intergenic | 45.0% |
!! | TTCAGCCTTTTCAAGGTAGG+TGG | + | chr8.3:74384340-74384359 | None:intergenic | 45.0% |
CATGCACAACTTGCACAACG+TGG | - | chr8.3:74384459-74384478 | MS.gene072235:intron | 50.0% | |
CGCCGAGGAGTTTGACTAAT+GGG | + | chr8.3:74384531-74384550 | None:intergenic | 50.0% | |
GTTGGGTGCTTCAACAACCA+AGG | - | chr8.3:74384579-74384598 | MS.gene072235:intron | 50.0% | |
TCTGTGAATGCAATCCTCGG+CGG | - | chr8.3:74384250-74384269 | MS.gene072235:CDS | 50.0% | |
ACGACGGAACCAAACGACGA+GGG | + | chr8.3:74384508-74384527 | None:intergenic | 55.0% | |
GATCTCCTTCCCTCGTCGTT+TGG | - | chr8.3:74384496-74384515 | MS.gene072235:intron | 55.0% | |
GCACAACTTGCACAACGTGG+TGG | - | chr8.3:74384462-74384481 | MS.gene072235:intron | 55.0% | |
GCCTCCCACCTACCTTGAAA+AGG | - | chr8.3:74384332-74384351 | MS.gene072235:CDS | 55.0% | |
GCGCCGAGGAGTTTGACTAA+TGG | + | chr8.3:74384532-74384551 | None:intergenic | 55.0% | |
GTCGACAAACAGTGGCTGCT+AGG | - | chr8.3:74384720-74384739 | MS.gene072235:CDS | 55.0% | |
!! | GCCTTTTCAAGGTAGGTGGG+AGG | + | chr8.3:74384336-74384355 | None:intergenic | 55.0% |
CGGAACCAAACGACGAGGGA+AGG | + | chr8.3:74384504-74384523 | None:intergenic | 60.0% | |
GACGACGGAACCAAACGACG+AGG | + | chr8.3:74384509-74384528 | None:intergenic | 60.0% | |
!! | CAATTTTTGGGCAGCCGCCG+AGG | + | chr8.3:74384267-74384286 | None:intergenic | 60.0% |
TCCTCGGCGCTCTCTCTGCT+GGG | - | chr8.3:74384542-74384561 | MS.gene072235:intron | 65.0% | |
CTCCTCGGCGCTCTCTCTGC+TGG | - | chr8.3:74384541-74384560 | MS.gene072235:intron | 70.0% | |
!! | TCCCAGCAGAGAGAGCGCCG+AGG | + | chr8.3:74384546-74384565 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 74384178 | 74385340 | 74384178 | ID=MS.gene072235 |
chr8.3 | mRNA | 74384178 | 74385340 | 74384178 | ID=MS.gene072235.t1;Parent=MS.gene072235 |
chr8.3 | exon | 74384918 | 74385340 | 74384918 | ID=MS.gene072235.t1.exon1;Parent=MS.gene072235.t1 |
chr8.3 | CDS | 74384918 | 74385340 | 74384918 | ID=cds.MS.gene072235.t1;Parent=MS.gene072235.t1 |
chr8.3 | exon | 74384634 | 74384786 | 74384634 | ID=MS.gene072235.t1.exon2;Parent=MS.gene072235.t1 |
chr8.3 | CDS | 74384634 | 74384786 | 74384634 | ID=cds.MS.gene072235.t1;Parent=MS.gene072235.t1 |
chr8.3 | exon | 74384178 | 74384441 | 74384178 | ID=MS.gene072235.t1.exon3;Parent=MS.gene072235.t1 |
chr8.3 | CDS | 74384178 | 74384441 | 74384178 | ID=cds.MS.gene072235.t1;Parent=MS.gene072235.t1 |
Gene Sequence |
Protein sequence |