AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072236

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072236.t1 MTR_8g014260 56.522 437 153 8 6 415 25 451 2.33e-148 429
MS.gene072236.t1 MTR_4g024710 68.601 293 89 2 124 415 57 347 6.14e-138 398
MS.gene072236.t1 MTR_4g024745 65.441 272 91 2 128 398 15 284 9.96e-114 334
MS.gene072236.t1 MTR_8g445780 51.295 386 149 7 6 369 22 390 2.72e-109 327
MS.gene072236.t1 MTR_8g014210 61.207 232 89 1 184 415 1 231 4.14e-89 270
MS.gene072236.t1 MTR_2g083840 41.514 436 221 13 6 415 30 457 3.45e-79 252
MS.gene072236.t1 MTR_8g062270 40.225 445 218 15 4 414 23 453 9.14e-77 245
MS.gene072236.t1 MTR_8g467800 39.189 444 221 17 4 415 27 453 1.53e-73 237
MS.gene072236.t1 MTR_5g092960 39.286 448 223 15 4 414 26 461 4.95e-69 226
MS.gene072236.t1 MTR_8g014160 37.130 439 188 11 4 415 48 425 9.57e-68 221
MS.gene072236.t1 MTR_8g058970 38.445 463 223 16 4 415 26 477 2.39e-66 219
MS.gene072236.t1 MTR_8g468810 38.322 441 234 16 4 415 32 463 4.67e-66 218
MS.gene072236.t1 MTR_8g468840 38.497 439 228 15 4 412 21 447 1.02e-64 214
MS.gene072236.t1 MTR_8g468760 37.303 445 203 14 4 414 16 418 1.87e-61 204
MS.gene072236.t1 MTR_8g077460 67.586 145 47 0 271 415 231 375 1.53e-58 196
MS.gene072236.t1 MTR_4g032730 36.564 454 232 19 6 414 24 466 7.73e-55 188
MS.gene072236.t1 MTR_8g062010 34.633 436 236 16 6 415 18 430 1.93e-49 173
MS.gene072236.t1 MTR_8g469020 34.821 448 242 16 6 415 16 451 1.12e-48 172
MS.gene072236.t1 MTR_8g058965 35.938 448 236 18 6 415 22 456 1.17e-48 172
MS.gene072236.t1 MTR_8g062310 34.332 434 226 18 4 415 32 428 6.32e-45 161
MS.gene072236.t1 MTR_8g070950 33.562 438 236 17 6 415 24 434 8.99e-45 161
MS.gene072236.t1 MTR_8g062080 32.280 443 238 18 6 415 32 445 1.20e-42 155
MS.gene072236.t1 MTR_8g468810 37.101 345 186 13 4 325 32 368 1.16e-40 148
MS.gene072236.t1 MTR_5g092960 37.429 350 178 12 4 322 26 365 8.97e-40 147
MS.gene072236.t1 MTR_8g062300 30.603 464 251 16 4 415 33 477 2.89e-37 141
MS.gene072236.t1 MTR_8g467800 37.710 297 148 13 4 277 27 309 1.26e-36 137
MS.gene072236.t1 MTR_4g050250 32.840 405 208 19 6 361 30 419 3.35e-35 135
MS.gene072236.t1 MTR_8g468810 34.754 305 171 10 4 291 32 325 6.58e-33 126
MS.gene072236.t1 MTR_8g468810 35.052 291 165 9 4 277 32 315 3.36e-32 124
MS.gene072236.t1 MTR_8g468810 35.052 291 165 9 4 277 32 315 5.28e-32 124
MS.gene072236.t1 MTR_8g014230 62.500 88 32 1 328 415 18 104 1.58e-31 116
MS.gene072236.t1 MTR_2g086020 48.592 142 69 4 277 415 175 315 3.07e-26 108
MS.gene072236.t1 MTR_1g041245 28.833 437 219 23 3 415 18 386 2.50e-19 89.4
MS.gene072236.t1 MTR_4g080787 26.697 442 279 14 9 414 31 463 3.88e-19 89.7
MS.gene072236.t1 MTR_5g084070 29.274 427 252 15 4 407 20 419 5.41e-19 89.0
MS.gene072236.t1 MTR_5g021550 62.857 70 24 1 6 75 28 95 2.04e-18 82.4
MS.gene072236.t1 MTR_7g098510 26.118 425 239 15 6 415 27 391 2.44e-17 83.6
MS.gene072236.t1 MTR_5g080710 27.907 430 261 17 4 407 40 446 1.76e-16 81.6
MS.gene072236.t1 MTR_4g080773 26.606 436 265 15 3 398 26 446 6.93e-16 79.7
MS.gene072236.t1 MTR_4g080773 26.606 436 265 15 3 398 26 446 8.48e-16 79.7
MS.gene072236.t1 MTR_8g014290 52.703 74 31 1 6 75 19 92 1.53e-15 74.3
MS.gene072236.t1 MTR_5g039950 27.226 393 240 12 4 384 30 388 2.61e-15 77.8
MS.gene072236.t1 MTR_3g108560 26.636 428 227 17 6 414 29 388 3.81e-14 73.9
MS.gene072236.t1 MTR_4g024720 53.521 71 28 2 6 74 26 93 1.11e-12 67.0
MS.gene072236.t1 MTR_4g024770 75.000 36 9 0 6 41 33 68 1.09e-11 60.8
MS.gene072236.t1 MTR_4g056040 27.742 310 177 12 126 404 169 462 1.37e-11 66.6
MS.gene072236.t1 MTR_5g007090 27.381 420 240 21 6 384 39 434 1.53e-11 66.2
MS.gene072236.t1 MTR_2g082800 25.666 413 219 15 6 374 36 404 2.17e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072236.t1 AT4G26340 29.724 434 265 12 1 415 7 419 3.73e-38 143
MS.gene072236.t1 AT3G49030 29.138 429 266 16 6 414 30 440 1.11e-25 108
MS.gene072236.t1 AT2G04230 26.667 450 269 17 4 415 20 446 2.94e-22 98.6
MS.gene072236.t1 AT3G49030 27.934 426 249 16 6 414 30 414 5.52e-22 97.8
MS.gene072236.t1 AT3G50710 28.054 442 270 17 1 415 7 427 1.19e-21 96.7
MS.gene072236.t1 AT3G52680 29.025 441 255 20 6 414 30 444 1.56e-21 96.7
MS.gene072236.t1 AT1G32375 26.207 435 277 13 4 415 9 422 4.68e-21 95.1
MS.gene072236.t1 AT1G32375 26.207 435 277 13 4 415 9 422 4.68e-21 95.1
MS.gene072236.t1 AT5G56420 26.606 436 271 17 3 415 13 422 9.84e-20 90.9
MS.gene072236.t1 AT5G56420 26.606 436 271 17 3 415 13 422 9.84e-20 90.9
MS.gene072236.t1 AT5G56420 26.606 436 271 17 3 415 13 422 9.84e-20 90.9
MS.gene072236.t1 AT4G00160 27.045 440 271 17 4 414 23 441 2.99e-19 89.7
MS.gene072236.t1 AT5G38570 25.304 411 259 11 6 414 11 375 6.56e-19 88.2
MS.gene072236.t1 AT3G26930 25.653 421 277 15 15 415 39 443 1.29e-18 87.8
MS.gene072236.t1 AT5G56440 26.682 446 268 19 3 414 9 429 3.03e-18 86.7
MS.gene072236.t1 AT3G49020 25.472 424 275 15 15 415 40 445 3.28e-18 86.7
MS.gene072236.t1 AT5G38590 26.196 397 255 13 6 385 11 386 4.82e-18 85.9
MS.gene072236.t1 AT5G44950 26.606 436 271 17 6 408 13 432 2.67e-17 84.0
MS.gene072236.t1 AT1G51370 27.423 423 269 15 6 410 28 430 6.34e-17 82.8
MS.gene072236.t1 AT3G51530 26.742 445 265 19 4 415 37 453 2.68e-16 80.9
MS.gene072236.t1 AT2G26860 26.585 410 253 12 6 387 11 400 7.61e-16 79.3
MS.gene072236.t1 AT2G26860 26.585 410 253 12 6 387 11 400 7.61e-16 79.3
MS.gene072236.t1 AT5G56820 26.697 442 252 18 3 412 22 423 1.30e-15 79.0
MS.gene072236.t1 AT4G13965 28.146 437 251 20 5 412 18 420 1.57e-15 78.6
MS.gene072236.t1 AT5G56370 26.682 446 259 17 3 414 9 420 2.17e-15 78.2
MS.gene072236.t1 AT5G56370 26.682 446 259 17 3 414 9 420 2.17e-15 78.2
MS.gene072236.t1 AT3G49040 29.572 257 151 8 4 243 24 267 2.34e-15 77.0
MS.gene072236.t1 AT3G58920 26.013 469 275 19 4 412 9 465 4.38e-15 77.4
MS.gene072236.t1 AT5G56390 25.532 423 271 15 16 414 22 424 4.92e-15 77.0
MS.gene072236.t1 AT5G56800 28.622 283 173 13 144 414 78 343 5.34e-15 76.3
MS.gene072236.t1 AT5G56400 26.233 446 261 24 6 415 42 455 8.01e-15 76.3
MS.gene072236.t1 AT5G62970 24.946 461 276 20 3 414 9 448 2.30e-14 75.1
MS.gene072236.t1 AT3G59200 30.153 262 153 8 4 245 14 265 3.64e-14 73.9
MS.gene072236.t1 AT3G59200 30.153 262 153 8 4 245 14 265 3.97e-14 74.3
MS.gene072236.t1 AT3G52690 29.530 298 169 15 138 414 20 297 7.87e-14 72.0
MS.gene072236.t1 AT1G69630 27.294 436 268 16 4 407 25 443 1.13e-13 72.8
MS.gene072236.t1 AT5G50270 24.818 411 256 16 16 397 22 408 2.00e-13 72.0
MS.gene072236.t1 AT5G35995 25.435 460 278 16 3 414 12 454 6.06e-13 70.5
MS.gene072236.t1 AT5G35995 25.435 460 278 16 3 414 12 454 6.06e-13 70.5
MS.gene072236.t1 AT1G78750 25.942 451 268 15 6 412 27 455 6.22e-13 70.5
MS.gene072236.t1 AT1G78750 25.942 451 268 15 6 412 27 455 6.22e-13 70.5
MS.gene072236.t1 AT3G54910 26.351 296 190 9 128 415 98 373 6.60e-13 70.1
MS.gene072236.t1 AT3G54910 26.351 296 190 9 128 415 98 373 6.60e-13 70.1
MS.gene072236.t1 AT3G54910 26.351 296 190 9 128 415 98 373 6.60e-13 70.1
MS.gene072236.t1 AT3G26922 29.329 283 168 13 5 272 22 287 1.04e-12 68.9
MS.gene072236.t1 AT3G26922 29.329 283 168 13 5 272 22 287 1.04e-12 68.9
MS.gene072236.t1 AT1G51055 34.351 131 73 4 293 415 36 161 1.08e-12 66.2
MS.gene072236.t1 AT5G56810 27.880 434 264 15 4 412 22 431 2.12e-12 68.9
MS.gene072236.t1 AT1G06630 26.879 346 219 9 6 328 21 355 3.77e-12 67.8
MS.gene072236.t1 AT1G06630 26.879 346 219 9 6 328 21 355 3.77e-12 67.8
MS.gene072236.t1 AT5G56560 25.430 291 185 10 139 415 335 607 4.92e-12 68.2
MS.gene072236.t1 AT5G56380 26.164 451 270 18 6 415 11 439 6.81e-12 67.4
MS.gene072236.t1 AT5G56380 26.164 451 270 18 6 415 11 439 6.81e-12 67.4
MS.gene072236.t1 AT5G56560 24.017 458 247 20 6 415 14 418 8.75e-12 67.0
MS.gene072236.t1 AT1G06630 25.693 397 248 11 6 372 21 400 8.93e-12 67.0
MS.gene072236.t1 AT1G06630 25.693 397 248 11 6 372 21 400 8.93e-12 67.0
MS.gene072236.t1 AT1G06630 25.693 397 248 11 6 372 21 400 8.93e-12 67.0
MS.gene072236.t1 AT1G06630 25.693 397 248 11 6 372 21 400 8.93e-12 67.0
MS.gene072236.t1 AT1G06630 28.736 261 154 7 6 245 30 279 1.03e-11 66.6
MS.gene072236.t1 AT1G06630 28.736 261 154 7 6 245 21 270 1.14e-11 65.9
MS.gene072236.t1 AT3G52680 30.000 340 190 16 6 324 30 342 1.42e-11 65.9
MS.gene072236.t1 AT1G06630 28.736 261 154 7 6 245 21 270 3.87e-11 65.1
MS.gene072236.t1 AT3G26922 28.467 274 164 13 14 272 2 258 4.23e-11 63.9
MS.gene072236.t1 AT3G26922 28.467 274 164 13 14 272 2 258 4.23e-11 63.9

Find 92 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACCTTTATTCAATTTAA+AGG 0.131846 8.3:-74396479 MS.gene072236:CDS
ACTCAGAAGCTTCGCTGTTT+TGG 0.280021 8.3:-74397962 MS.gene072236:CDS
TAATTGTTGTAGAGCTTTGT+AGG 0.290039 8.3:+74397476 None:intergenic
AGGTGGGTTCGTGCCGTCAT+TGG 0.318155 8.3:-74397833 MS.gene072236:CDS
CTCCGTAATCCTCCGCCATT+TGG 0.335932 8.3:-74397919 MS.gene072236:CDS
AAAACCTTTAAATTGAATAA+AGG 0.336412 8.3:+74396475 None:intergenic
AGGTTCGATATGAGACAATT+AGG 0.346469 8.3:+74396500 None:intergenic
AAGCAAGCAAAGTAGTGAAT+TGG 0.363036 8.3:+74396793 None:intergenic
CATCTAGGAGCTTGAGTAAT+GGG 0.366341 8.3:+74397113 None:intergenic
CAAAACTTAACCTTAGTTGT+TGG 0.373804 8.3:+74397055 None:intergenic
CATCTCTATCCCATGTCGTT+TGG 0.377720 8.3:-74397145 MS.gene072236:CDS
AAGCTCCTAGATGCTCTGTC+TGG 0.388176 8.3:-74397103 MS.gene072236:CDS
TGTGGAGCCCATCCTAAAAT+TGG 0.389214 8.3:+74396533 None:intergenic
GCTGGTGGAAACCACGGTTT+TGG 0.389987 8.3:+74398086 None:intergenic
ATTTAGAGCTCATGCTGACC+TGG 0.395215 8.3:-74396823 MS.gene072236:CDS
CTCGCCGGTGGCGACACCTT+TGG 0.406449 8.3:-74398056 MS.gene072236:CDS
GATTATTTCTGATATTTCCT+TGG 0.407803 8.3:-74396384 MS.gene072236:CDS
GGTGGGTTCGTGCCGTCATT+GGG 0.409775 8.3:-74397832 MS.gene072236:CDS
TTCCAAATGGCGGAGGATTA+CGG 0.413128 8.3:+74397917 None:intergenic
GAATGTCGTACTTCTCCCTT+TGG 0.427201 8.3:+74396360 None:intergenic
TGTTTGTTCCTCAGTATCCA+TGG 0.429945 8.3:-74397514 MS.gene072236:intron
CACGTGCTGATTCAGTTAAC+AGG 0.435593 8.3:-74397853 MS.gene072236:CDS
TCAAATGTGTCAAGGGCCTC+TGG 0.439865 8.3:-74396326 MS.gene072236:CDS
ATGGGCATTGGGTAATGTTA+AGG 0.446894 8.3:+74397221 None:intergenic
CTTTAAATTGAATAAAGGTC+AGG 0.450396 8.3:+74396480 None:intergenic
TGATATTTCCTTGGACCAAA+GGG 0.451414 8.3:-74396375 MS.gene072236:CDS
AACATCATAGAATGGGCATT+GGG 0.468213 8.3:+74397210 None:intergenic
TTTGAGTAGTCCAACAACTA+AGG 0.473906 8.3:-74397065 MS.gene072236:intron
TCAACAAATGACATCTCATC+TGG 0.477145 8.3:+74396443 None:intergenic
GTGTTTAAAACATCATAGAA+TGG 0.479482 8.3:+74397202 None:intergenic
CTGATATTTCCTTGGACCAA+AGG 0.487521 8.3:-74396376 MS.gene072236:CDS
ATGGCGGAGGATTACGGAGG+AGG 0.492087 8.3:+74397923 None:intergenic
TGTTTAAAACATCATAGAAT+GGG 0.492675 8.3:+74397203 None:intergenic
ACATCCCACCTACCTTGAAA+AGG 0.492710 8.3:-74397312 MS.gene072236:CDS
AGCTCCTAGATGCTCTGTCT+GGG 0.492832 8.3:-74397102 MS.gene072236:CDS
TCGGGAGGCGTGAGAGGATG+TGG 0.496398 8.3:+74398109 None:intergenic
GAGGATTACGGAGGAGGGAA+AGG 0.500530 8.3:+74397929 None:intergenic
TTGTCCCAGACAGAGCATCT+AGG 0.505195 8.3:+74397098 None:intergenic
AAGGTGAAGTTCCTCGAGAT+GGG 0.505432 8.3:+74397808 None:intergenic
AAACATCATAGAATGGGCAT+TGG 0.505943 8.3:+74397209 None:intergenic
AAGATTCTGTTAATTGACAT+TGG 0.510535 8.3:-74397439 MS.gene072236:CDS
ACACCTTTGGCAGAATCTCC+AGG 0.512480 8.3:-74398043 MS.gene072236:CDS
CAAGGTGAAGTTCCTCGAGA+TGG 0.515326 8.3:+74397807 None:intergenic
GTACTTCTCCCTTTGGTCCA+AGG 0.515790 8.3:+74396367 None:intergenic
CATCTCAGTCAAATGTAAGT+TGG 0.521303 8.3:+74396297 None:intergenic
CCACCAGCTGTCTATCTCGC+CGG 0.523462 8.3:-74398071 MS.gene072236:CDS
CCCACCTACCTTGAAAAGGC+TGG 0.525727 8.3:-74397308 MS.gene072236:CDS
CTCGAGATGGGGCCCAATGA+CGG 0.527848 8.3:+74397820 None:intergenic
GATGAGATGCATCTTCCAAA+TGG 0.528567 8.3:+74397904 None:intergenic
TGTTGTCTGAACGGAGATCA+AGG 0.529944 8.3:+74397789 None:intergenic
TTTGCTGACAATGACAGTGG+TGG 0.530795 8.3:-74397280 MS.gene072236:CDS
TTGCTGACAATGACAGTGGT+GGG 0.531811 8.3:-74397279 MS.gene072236:CDS
CATCATCGAAATCTAGCACC+TGG 0.535113 8.3:+74398025 None:intergenic
GTTTGTTCCTCAGTATCCAT+GGG 0.538734 8.3:-74397513 MS.gene072236:intron
AAAGATTATCAAATGTGTCA+AGG 0.550375 8.3:-74396334 MS.gene072236:CDS
AAGATTATCAAATGTGTCAA+GGG 0.551821 8.3:-74396333 MS.gene072236:CDS
TCTGCCAAAGGTGTCGCCAC+CGG 0.553605 8.3:+74398052 None:intergenic
CGTCATTGGGCCCCATCTCG+AGG 0.556400 8.3:-74397819 MS.gene072236:CDS
GACAATGAAACCAAACGACA+TGG 0.562304 8.3:+74397135 None:intergenic
TGGCGGAGGATTACGGAGGA+GGG 0.563293 8.3:+74397924 None:intergenic
GGCGCGTTAATTTCAAGTGA+AGG 0.565512 8.3:+74397256 None:intergenic
TTTAGAGCTCATGCTGACCT+GGG 0.566033 8.3:-74396822 MS.gene072236:CDS
GCATCTAGGAGCTTGAGTAA+TGG 0.570363 8.3:+74397112 None:intergenic
TCTCAAAATTCAGATCTACA+AGG 0.571443 8.3:-74396747 MS.gene072236:intron
ATGAGACAATTAGGAACACT+TGG 0.572179 8.3:+74396509 None:intergenic
GTGAACAAACAGTGGCTGCT+TGG 0.586558 8.3:-74396890 MS.gene072236:intron
CAAACGACATGGGATAGAGA+TGG 0.595053 8.3:+74397146 None:intergenic
CAATTAGGAACACTTGGCTG+TGG 0.595075 8.3:+74396515 None:intergenic
GGAGCCCATCCTAAAATTGG+TGG 0.598007 8.3:+74396536 None:intergenic
GTGCTGATTCAGTTAACAGG+TGG 0.598362 8.3:-74397850 MS.gene072236:CDS
ATTAACAGAATCTTCAATGA+CGG 0.599299 8.3:+74397448 None:intergenic
ATGCATCTTCCAAATGGCGG+AGG 0.600294 8.3:+74397910 None:intergenic
CCGGCGAGATAGACAGCTGG+TGG 0.600529 8.3:+74398071 None:intergenic
GCACCTGGAGATTCTGCCAA+AGG 0.600967 8.3:+74398040 None:intergenic
TCTATCAATGCACTCCTCTG+TGG 0.614921 8.3:-74397400 MS.gene072236:CDS
GGTTTACACGAATTGTCCCA+TGG 0.615081 8.3:+74397497 None:intergenic
TGCTGATTCAGTTAACAGGT+GGG 0.620571 8.3:-74397849 MS.gene072236:CDS
CCACCGGCGAGATAGACAGC+TGG 0.631496 8.3:+74398068 None:intergenic
AGGTGAAGTTCCTCGAGATG+GGG 0.635365 8.3:+74397809 None:intergenic
ATGTTAAGGTACTCAAGATG+AGG 0.643237 8.3:+74397235 None:intergenic
ACAATGAAACCAAACGACAT+GGG 0.644148 8.3:+74397136 None:intergenic
TTCTTTGCTGACAATGACAG+TGG 0.650414 8.3:-74397283 MS.gene072236:CDS
ACGTGAGTTGTCATCGACAA+CGG 0.652346 8.3:+74397871 None:intergenic
TAGTGAATTGGAGTTAACCC+AGG 0.656521 8.3:+74396805 None:intergenic
TAGACAGCTGGTGGAAACCA+CGG 0.657908 8.3:+74398080 None:intergenic
CGTTGTCGATGTTGTCTGAA+CGG 0.658515 8.3:+74397780 None:intergenic
CCAGCTGTCTATCTCGCCGG+TGG 0.664869 8.3:-74398068 MS.gene072236:CDS
CACGCAGAACTTGCACAATG+TGG 0.672729 8.3:-74397182 MS.gene072236:CDS
TGTAAGTTGGCACATTCCAG+AGG 0.679400 8.3:+74396310 None:intergenic
ACGCCTCCCGACCAAAACCG+TGG 0.688622 8.3:-74398097 MS.gene072236:CDS
GAGATGCATCTTCCAAATGG+CGG 0.711003 8.3:+74397907 None:intergenic
CAAATGGCGGAGGATTACGG+AGG 0.786225 8.3:+74397920 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATGATTTATTTATTTA+TGG - chr8.3:74397484-74397503 MS.gene072236:CDS 10.0%
!! AAAACCTTTAAATTGAATAA+AGG + chr8.3:74397961-74397980 None:intergenic 15.0%
!! TTAATCATGTATATATTAAG+TGG + chr8.3:74397821-74397840 None:intergenic 15.0%
!!! GTTTAATTTGAAGTTTAATT+CGG - chr8.3:74397712-74397731 MS.gene072236:intron 15.0%
!!! ATTCAATTTAAAGGTTTTCA+AGG - chr8.3:74397963-74397982 MS.gene072236:CDS 20.0%
!!! TGTTTAAAACATCATAGAAT+GGG + chr8.3:74397233-74397252 None:intergenic 20.0%
! AAAGATTATCAAATGTGTCA+AGG - chr8.3:74398099-74398118 MS.gene072236:CDS 25.0%
! AAGATTATCAAATGTGTCAA+GGG - chr8.3:74398100-74398119 MS.gene072236:CDS 25.0%
! AAGATTCTGTTAATTGACAT+TGG - chr8.3:74396994-74397013 MS.gene072236:intron 25.0%
! AGATTTCAAGCAAATCATAT+TGG + chr8.3:74396816-74396835 None:intergenic 25.0%
! ATTAACAGAATCTTCAATGA+CGG + chr8.3:74396988-74397007 None:intergenic 25.0%
! ATTCTTGAAAAAGCAATTCA+CGG + chr8.3:74397575-74397594 None:intergenic 25.0%
! CTGACCTTTATTCAATTTAA+AGG - chr8.3:74397954-74397973 MS.gene072236:CDS 25.0%
! CTTTAAATTGAATAAAGGTC+AGG + chr8.3:74397956-74397975 None:intergenic 25.0%
! GTTGTTCTTTATTGTTTACT+AGG - chr8.3:74396777-74396796 MS.gene072236:CDS 25.0%
! TTATGACCATGAAAAAAGAA+TGG - chr8.3:74397089-74397108 MS.gene072236:CDS 25.0%
! TTGCTTTCAATCTTAAGTAT+TGG - chr8.3:74396854-74396873 MS.gene072236:CDS 25.0%
!! GCATCAGAATTTTTATGTTT+TGG + chr8.3:74397062-74397081 None:intergenic 25.0%
!! GTGTTTAAAACATCATAGAA+TGG + chr8.3:74397234-74397253 None:intergenic 25.0%
!!! GATTATTTCTGATATTTCCT+TGG - chr8.3:74398049-74398068 MS.gene072236:CDS 25.0%
!!! GTTTTGTTCTAATTACTACT+TGG - chr8.3:74397516-74397535 MS.gene072236:intron 25.0%
!!! TTTTGTCCATTCTTTTTTCA+TGG + chr8.3:74397098-74397117 None:intergenic 25.0%
CAAAACTTAACCTTAGTTGT+TGG + chr8.3:74397381-74397400 None:intergenic 30.0%
TCTCAAAATTCAGATCTACA+AGG - chr8.3:74397686-74397705 MS.gene072236:intron 30.0%
TTCTTGAAAAAGCAATTCAC+GGG + chr8.3:74397574-74397593 None:intergenic 30.0%
! TAATTGTTGTAGAGCTTTGT+AGG + chr8.3:74396960-74396979 None:intergenic 30.0%
!! AAGAGTCATCATTTTTGACA+TGG + chr8.3:74396441-74396460 None:intergenic 30.0%
!! CATGTATTTTTATTGCCTAC+AGG - chr8.3:74397869-74397888 MS.gene072236:CDS 30.0%
AAACATCATAGAATGGGCAT+TGG + chr8.3:74397227-74397246 None:intergenic 35.0%
AACATCATAGAATGGGCATT+GGG + chr8.3:74397226-74397245 None:intergenic 35.0%
AAGCAAGCAAAGTAGTGAAT+TGG + chr8.3:74397643-74397662 None:intergenic 35.0%
ACAATGAAACCAAACGACAT+GGG + chr8.3:74397300-74397319 None:intergenic 35.0%
AGGTTCGATATGAGACAATT+AGG + chr8.3:74397936-74397955 None:intergenic 35.0%
ATGAGACAATTAGGAACACT+TGG + chr8.3:74397927-74397946 None:intergenic 35.0%
CTTAACCAGCTCTTATGAAA+TGG - chr8.3:74397756-74397775 MS.gene072236:intron 35.0%
GTAATCCATTTCATAAGAGC+TGG + chr8.3:74397764-74397783 None:intergenic 35.0%
TCAACAAATGACATCTCATC+TGG + chr8.3:74397993-74398012 None:intergenic 35.0%
TCTTGAAAAAGCAATTCACG+GGG + chr8.3:74397573-74397592 None:intergenic 35.0%
TGATATTTCCTTGGACCAAA+GGG - chr8.3:74398058-74398077 MS.gene072236:CDS 35.0%
TTTGAGTAGTCCAACAACTA+AGG - chr8.3:74397368-74397387 MS.gene072236:CDS 35.0%
! ATGTTAAGGTACTCAAGATG+AGG + chr8.3:74397201-74397220 None:intergenic 35.0%
! GTTGAGCATGTTTTGCAAAA+AGG - chr8.3:74398008-74398027 MS.gene072236:CDS 35.0%
!! ATTTTGAGAACTTGAAGCAC+AGG + chr8.3:74397675-74397694 None:intergenic 35.0%
!! TCTTAAGTATTGGTGCTATG+TGG - chr8.3:74396864-74396883 MS.gene072236:CDS 35.0%
!! TTGGTAATGTGAACAAACAG+TGG - chr8.3:74397535-74397554 MS.gene072236:intron 35.0%
CATCTAGGAGCTTGAGTAAT+GGG + chr8.3:74397323-74397342 None:intergenic 40.0%
CTGATATTTCCTTGGACCAA+AGG - chr8.3:74398057-74398076 MS.gene072236:CDS 40.0%
GACAATGAAACCAAACGACA+TGG + chr8.3:74397301-74397320 None:intergenic 40.0%
GATGAGATGCATCTTCCAAA+TGG + chr8.3:74396532-74396551 None:intergenic 40.0%
GTTTGTTCCTCAGTATCCAT+GGG - chr8.3:74396920-74396939 MS.gene072236:intron 40.0%
TAGTGAATTGGAGTTAACCC+AGG + chr8.3:74397631-74397650 None:intergenic 40.0%
TGTTTGTTCCTCAGTATCCA+TGG - chr8.3:74396919-74396938 MS.gene072236:intron 40.0%
TTCTTTGCTGACAATGACAG+TGG - chr8.3:74397150-74397169 MS.gene072236:CDS 40.0%
! AAAGAAGTCCAGCCTTTTCA+AGG + chr8.3:74397136-74397155 None:intergenic 40.0%
!! ATGGGCATTGGGTAATGTTA+AGG + chr8.3:74397215-74397234 None:intergenic 40.0%
!! TGCTGATTCAGTTAACAGGT+GGG - chr8.3:74396584-74396603 MS.gene072236:intron 40.0%
AAGGTGAAGTTCCTCGAGAT+GGG + chr8.3:74396628-74396647 None:intergenic 45.0%
AAGTGAAGAGGTTTAGAGGG+AGG + chr8.3:74396695-74396714 None:intergenic 45.0%
ACATCCCACCTACCTTGAAA+AGG - chr8.3:74397121-74397140 MS.gene072236:CDS 45.0%
ACGTGAGTTGTCATCGACAA+CGG + chr8.3:74396565-74396584 None:intergenic 45.0%
CAAACGACATGGGATAGAGA+TGG + chr8.3:74397290-74397309 None:intergenic 45.0%
CAATTAGGAACACTTGGCTG+TGG + chr8.3:74397921-74397940 None:intergenic 45.0%
CATCATCGAAATCTAGCACC+TGG + chr8.3:74396411-74396430 None:intergenic 45.0%
CATCTCTATCCCATGTCGTT+TGG - chr8.3:74397288-74397307 MS.gene072236:CDS 45.0%
CGTTGTCGATGTTGTCTGAA+CGG + chr8.3:74396656-74396675 None:intergenic 45.0%
GAATGTCGTACTTCTCCCTT+TGG + chr8.3:74398076-74398095 None:intergenic 45.0%
GAATTGTCCCATGGATACTG+AGG + chr8.3:74396930-74396949 None:intergenic 45.0%
GAGATGCATCTTCCAAATGG+CGG + chr8.3:74396529-74396548 None:intergenic 45.0%
GCATCTAGGAGCTTGAGTAA+TGG + chr8.3:74397324-74397343 None:intergenic 45.0%
GCCTGAGTAAAACGAGGTTA+GGG + chr8.3:74396719-74396738 None:intergenic 45.0%
GGCAAGTGAAGAGGTTTAGA+GGG + chr8.3:74396698-74396717 None:intergenic 45.0%
GGTTTACACGAATTGTCCCA+TGG + chr8.3:74396939-74396958 None:intergenic 45.0%
TCTATCAATGCACTCCTCTG+TGG - chr8.3:74397033-74397052 MS.gene072236:intron 45.0%
TGCCTGAGTAAAACGAGGTT+AGG + chr8.3:74396720-74396739 None:intergenic 45.0%
TGTGGAGCCCATCCTAAAAT+TGG + chr8.3:74397903-74397922 None:intergenic 45.0%
TGTTGTCTGAACGGAGATCA+AGG + chr8.3:74396647-74396666 None:intergenic 45.0%
TTGCTGACAATGACAGTGGT+GGG - chr8.3:74397154-74397173 MS.gene072236:CDS 45.0%
TTTGCTGACAATGACAGTGG+TGG - chr8.3:74397153-74397172 MS.gene072236:CDS 45.0%
! ACTCAGAAGCTTCGCTGTTT+TGG - chr8.3:74396471-74396490 MS.gene072236:CDS 45.0%
! ATTTAGAGCTCATGCTGACC+TGG - chr8.3:74397610-74397629 MS.gene072236:intron 45.0%
! GGCGCGTTAATTTCAAGTGA+AGG + chr8.3:74397180-74397199 None:intergenic 45.0%
! TGTAAGTTGGCACATTCCAG+AGG + chr8.3:74398126-74398145 None:intergenic 45.0%
! TTCCAAATGGCGGAGGATTA+CGG + chr8.3:74396519-74396538 None:intergenic 45.0%
! TTTAGAGCTCATGCTGACCT+GGG - chr8.3:74397611-74397630 MS.gene072236:intron 45.0%
!! AAGTCCAGCCTTTTCAAGGT+AGG + chr8.3:74397132-74397151 None:intergenic 45.0%
!! AGCAGCCACCAATTTTAGGA+TGG - chr8.3:74397892-74397911 MS.gene072236:CDS 45.0%
!! CACGTGCTGATTCAGTTAAC+AGG - chr8.3:74396580-74396599 MS.gene072236:intron 45.0%
!! GTGCTGATTCAGTTAACAGG+TGG - chr8.3:74396583-74396602 MS.gene072236:intron 45.0%
!!! GCAGCCACCAATTTTAGGAT+GGG - chr8.3:74397893-74397912 MS.gene072236:CDS 45.0%
!!! TTATGTTTTGGCAGCCACAG+AGG + chr8.3:74397050-74397069 None:intergenic 45.0%
AAGCGTGCCTGAGTAAAACG+AGG + chr8.3:74396725-74396744 None:intergenic 50.0%
AAGCTCCTAGATGCTCTGTC+TGG - chr8.3:74397330-74397349 MS.gene072236:CDS 50.0%
ACACCTTTGGCAGAATCTCC+AGG - chr8.3:74396390-74396409 MS.gene072236:CDS 50.0%
AGCTCCTAGATGCTCTGTCT+GGG - chr8.3:74397331-74397350 MS.gene072236:CDS 50.0%
AGGTGAAGTTCCTCGAGATG+GGG + chr8.3:74396627-74396646 None:intergenic 50.0%
ATGCATCTTCCAAATGGCGG+AGG + chr8.3:74396526-74396545 None:intergenic 50.0%
CAAGGTGAAGTTCCTCGAGA+TGG + chr8.3:74396629-74396648 None:intergenic 50.0%
CACGCAGAACTTGCACAATG+TGG - chr8.3:74397251-74397270 MS.gene072236:CDS 50.0%
GAGGTTTAGAGGGAGGTTGA+AGG + chr8.3:74396688-74396707 None:intergenic 50.0%
GGAGCCCATCCTAAAATTGG+TGG + chr8.3:74397900-74397919 None:intergenic 50.0%
GGGCAAGTGAAGAGGTTTAG+AGG + chr8.3:74396699-74396718 None:intergenic 50.0%
GTACTTCTCCCTTTGGTCCA+AGG + chr8.3:74398069-74398088 None:intergenic 50.0%
GTGAACAAACAGTGGCTGCT+TGG - chr8.3:74397543-74397562 MS.gene072236:intron 50.0%
TAGACAGCTGGTGGAAACCA+CGG + chr8.3:74396356-74396375 None:intergenic 50.0%
TCAAATGTGTCAAGGGCCTC+TGG - chr8.3:74398107-74398126 MS.gene072236:CDS 50.0%
! AAATTGGTGGCTGCTCCTGT+AGG + chr8.3:74397887-74397906 None:intergenic 50.0%
! CAGGAGCAGCCACCAATTTT+AGG - chr8.3:74397888-74397907 MS.gene072236:CDS 50.0%
! GCCCTAACCTCGTTTTACTC+AGG - chr8.3:74396715-74396734 MS.gene072236:intron 50.0%
! TTGTCCCAGACAGAGCATCT+AGG + chr8.3:74397338-74397357 None:intergenic 50.0%
!! CCAGCCTTTTCAAGGTAGGT+GGG + chr8.3:74397128-74397147 None:intergenic 50.0%
!! GTGGAAACCACGGTTTTGGT+CGG + chr8.3:74396346-74396365 None:intergenic 50.0%
!! TCCAGCCTTTTCAAGGTAGG+TGG + chr8.3:74397129-74397148 None:intergenic 50.0%
!! TGGAAACCACGGTTTTGGTC+GGG + chr8.3:74396345-74396364 None:intergenic 50.0%
CCCACCTACCTTGAAAAGGC+TGG - chr8.3:74397125-74397144 MS.gene072236:CDS 55.0%
CGAGGTTAGGGCAAGTGAAG+AGG + chr8.3:74396707-74396726 None:intergenic 55.0%
CTCCGTAATCCTCCGCCATT+TGG - chr8.3:74396514-74396533 MS.gene072236:CDS 55.0%
GAGGATTACGGAGGAGGGAA+AGG + chr8.3:74396507-74396526 None:intergenic 55.0%
GCACCTGGAGATTCTGCCAA+AGG + chr8.3:74396396-74396415 None:intergenic 55.0%
! CAAATGGCGGAGGATTACGG+AGG + chr8.3:74396516-74396535 None:intergenic 55.0%
! GCTGGTGGAAACCACGGTTT+TGG + chr8.3:74396350-74396369 None:intergenic 55.0%
!! AAACCACGGTTTTGGTCGGG+AGG + chr8.3:74396342-74396361 None:intergenic 55.0%
CCACCAGCTGTCTATCTCGC+CGG - chr8.3:74396362-74396381 MS.gene072236:CDS 60.0%
CTCGAGATGGGGCCCAATGA+CGG + chr8.3:74396616-74396635 None:intergenic 60.0%
TGGCGGAGGATTACGGAGGA+GGG + chr8.3:74396512-74396531 None:intergenic 60.0%
! AGGTGGGTTCGTGCCGTCAT+TGG - chr8.3:74396600-74396619 MS.gene072236:intron 60.0%
! ATGGCGGAGGATTACGGAGG+AGG + chr8.3:74396513-74396532 None:intergenic 60.0%
! GGTGGGTTCGTGCCGTCATT+GGG - chr8.3:74396601-74396620 MS.gene072236:intron 60.0%
!! TCTGCCAAAGGTGTCGCCAC+CGG + chr8.3:74396384-74396403 None:intergenic 60.0%
!! TTTTGGTCGGGAGGCGTGAG+AGG + chr8.3:74396333-74396352 None:intergenic 60.0%
ACGCCTCCCGACCAAAACCG+TGG - chr8.3:74396336-74396355 MS.gene072236:CDS 65.0%
CCACCGGCGAGATAGACAGC+TGG + chr8.3:74396368-74396387 None:intergenic 65.0%
CCAGCTGTCTATCTCGCCGG+TGG - chr8.3:74396365-74396384 MS.gene072236:CDS 65.0%
CCGGCGAGATAGACAGCTGG+TGG + chr8.3:74396365-74396384 None:intergenic 65.0%
CGTCATTGGGCCCCATCTCG+AGG - chr8.3:74396614-74396633 MS.gene072236:intron 65.0%
! TCGGGAGGCGTGAGAGGATG+TGG + chr8.3:74396327-74396346 None:intergenic 65.0%
CTCGCCGGTGGCGACACCTT+TGG - chr8.3:74396377-74396396 MS.gene072236:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 74396301 74398154 74396301 ID=MS.gene072236
chr8.3 mRNA 74396301 74398154 74396301 ID=MS.gene072236.t1;Parent=MS.gene072236
chr8.3 exon 74397781 74398154 74397781 ID=MS.gene072236.t1.exon1;Parent=MS.gene072236.t1
chr8.3 CDS 74397781 74398154 74397781 ID=cds.MS.gene072236.t1;Parent=MS.gene072236.t1
chr8.3 exon 74397066 74397522 74397066 ID=MS.gene072236.t1.exon2;Parent=MS.gene072236.t1
chr8.3 CDS 74397066 74397522 74397066 ID=cds.MS.gene072236.t1;Parent=MS.gene072236.t1
chr8.3 exon 74396748 74396900 74396748 ID=MS.gene072236.t1.exon3;Parent=MS.gene072236.t1
chr8.3 CDS 74396748 74396900 74396748 ID=cds.MS.gene072236.t1;Parent=MS.gene072236.t1
chr8.3 exon 74396301 74396564 74396301 ID=MS.gene072236.t1.exon4;Parent=MS.gene072236.t1
chr8.3 CDS 74396301 74396564 74396301 ID=cds.MS.gene072236.t1;Parent=MS.gene072236.t1
Gene Sequence

>MS.gene072236

ATGTGCGACAATGTGCTGCTCAACCACATCCTCTCACGCCTCCCGACCAAAACCGTGGTTTCCACCAGCTGTCTATCTCGCCGGTGGCGACACCTTTGGCAGAATCTCCAGGTGCTAGATTTCGATGATGACTATTTCCATGTCAAAAATGATGACTCTTTCGTTGATCGACTCAGAAGCTTCGCTGTTTTGGTTAACAGCGTCCTTTCCCTCCTCCGTAATCCTCCGCCATTTGGAAGATGCATCTCATCTGTGCTCACTCCGTTGTCGATGACAACTCACGTGCTGATTCAGTTAACAGGTGGGTTCGTGCCGTCATTGGGCCCCATCTCGAGGAACTTCACCTTGATCTCCGTTCAGACAACATCGACAACGTCAGACTTTCCTTCAACCTCCCTCTAAACCTCTTCACTTGCCCTAACCTCGTTTTACTCAGGCACGCTTCTATTGTTTATTATTATTTTGTGTTGTGTTGTGTTGTTCTTTATTGTTTACTAGGAAATTGAATTTAACCAATATGATTTGCTTGAAATCTAACGTGTATGAATCTGATTTGCTTTCAATCTTAAGTATTGGTGCTATGTGGTTATGAAATGTGAAATAACTTATAACATTATTTGTTTGTTCCTCAGTATCCATGGGACAATTCGTGTAAACCTACAAAGCTCTACAACAATTAGTTTACCGTCATTGAAGATTCTGTTAATTGACATTGGTTTTATTGACATTCATTCTATCAATGCACTCCTCTGTGGCTGCCAAAACATAAAAATTCTGATGCTTAGCTTTTATGACCATGAAAAAAGAATGGACAAAATTTACATCCCACCTACCTTGAAAAGGCTGGACTTCTTTGCTGACAATGACAGTGGTGGGCCTTCACTTGAAATTAACGCGCCTCATCTTGAGTACCTTAACATTACCCAATGCCCATTCTATGATGTTTTAAACACGCAGAACTTGCACAATGTGGTAGAAGCAAGTCTCCATCTCTATCCCATGTCGTTTGGTTTCATTGTCCCATTACTCAAGCTCCTAGATGCTCTGTCTGGGACAAAACATCTAACTTTGAGTAGTCCAACAACTAAGGTTAAGTTTTGTTTTAGTTTTTTAATGTTTACTCGTCGTTTATATAGAGAGTAAGTTAGTAACTAGCTAACTAATGACAAATTATATAACTAATAATCATGATTTATTTATTTATGGATAGATATAGTTTTGTTCTAATTACTACTTGGTAATGTGAACAAACAGTGGCTGCTTGGTGAACCCCGTGAATTGCTTTTTCAAGAATTTCGCTATTTGCTTCATTTAGAGCTCATGCTGACCTGGGTTAACTCCAATTCACTACTTTGCTTGCTTCAAAAATGTCCTGTGCTTCAAGTTCTCAAAATTCAGATCTACAAGGTTTGTTTAATTTGAAGTTTAATTCGGTCTGTATAACTTTAATGAGAACTTAACCAGCTCTTATGAAATGGATTACACAAATTAGTAGTTGCATTTTATTGTACAGTACACCACTTAATATATACATGATTAATTCATTACTACTAATATTGCATCTTATTCATGTATTTTTATTGCCTACAGGAGCAGCCACCAATTTTAGGATGGGCTCCACAGCCAAGTGTTCCTAATTGTCTCATATCGAACCTGACCTTTATTCAATTTAAAGGTTTTCAAGGATTTCCAGATGAGATGTCATTTGTTGAGCATGTTTTGCAAAAAGGACTTGTTTTGAAAACATTGATTATTTCTGATATTTCCTTGGACCAAAGGGAGAAGTACGACATTCTCAAAAGATTATCAAATGTGTCAAGGGCCTCTGGAATGTGCCAACTTACATTTGACTGA
Protein sequence

>MS.gene072236.t1

MCDNVLLNHILSRLPTKTVVSTSCLSRRWRHLWQNLQVLDFDDDYFHVKNDDSFVDRLRSFAVLVNSVLSLLRNPPPFGRCISSVLTPLSMTTHVLIQLTGGFVPSLGPISRNFTLISVQTTSTTIHGTIRVNLQSSTTISLPSLKILLIDIGFIDIHSINALLCGCQNIKILMLSFYDHEKRMDKIYIPPTLKRLDFFADNDSGGPSLEINAPHLEYLNITQCPFYDVLNTQNLHNVVEASLHLYPMSFGFIVPLLKLLDALSGTKHLTLSSPTTKWLLGEPRELLFQEFRYLLHLELMLTWVNSNSLLCLLQKCPVLQVLKIQIYKEQPPILGWAPQPSVPNCLISNLTFIQFKGFQGFPDEMSFVEHVLQKGLVLKTLIISDISLDQREKYDILKRLSNVSRASGMCQLTFD