AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34702

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34702.t1 MTR_8g467790 75.414 362 52 5 1 356 174 504 0.0 525
MS.gene34702.t1 MTR_8g070950 67.076 407 124 6 1 406 41 438 0.0 511
MS.gene34702.t1 MTR_8g062310 57.284 405 145 7 4 406 54 432 2.30e-151 435
MS.gene34702.t1 MTR_8g062010 59.036 415 146 9 1 406 35 434 3.89e-150 432
MS.gene34702.t1 MTR_8g062080 56.429 420 152 11 1 407 49 450 3.20e-149 431
MS.gene34702.t1 MTR_8g058965 55.479 438 147 10 2 407 40 461 1.40e-143 417
MS.gene34702.t1 MTR_8g469020 51.945 437 163 10 2 406 34 455 9.02e-141 409
MS.gene34702.t1 MTR_8g062300 52.561 449 153 11 1 407 52 482 5.21e-137 400
MS.gene34702.t1 MTR_4g050250 52.987 385 133 12 1 348 47 420 3.27e-117 348
MS.gene34702.t1 MTR_2g083840 42.453 424 209 15 1 402 47 457 4.27e-81 256
MS.gene34702.t1 MTR_8g062270 38.551 428 221 15 1 401 41 453 1.93e-73 236
MS.gene34702.t1 MTR_2g086020 75.862 145 35 0 262 406 175 319 2.46e-70 224
MS.gene34702.t1 MTR_2g086020 45.033 151 57 5 1 139 1 137 2.98e-26 108
MS.gene34702.t1 MTR_8g468810 38.318 428 223 15 1 402 51 463 1.16e-69 227
MS.gene34702.t1 MTR_8g014260 38.928 429 211 19 4 402 44 451 3.75e-69 225
MS.gene34702.t1 MTR_8g058970 37.668 446 221 16 1 402 45 477 4.55e-68 223
MS.gene34702.t1 MTR_4g032730 34.554 437 235 11 3 401 43 466 4.63e-63 210
MS.gene34702.t1 MTR_8g467800 37.063 429 221 15 2 402 46 453 9.79e-60 201
MS.gene34702.t1 MTR_8g445780 38.874 373 184 16 4 355 41 390 2.81e-59 198
MS.gene34702.t1 MTR_8g468760 35.981 428 204 14 1 401 34 418 3.36e-57 193
MS.gene34702.t1 MTR_5g092960 34.651 430 235 13 3 401 47 461 8.04e-57 193
MS.gene34702.t1 MTR_8g468840 35.613 424 233 15 2 400 40 448 4.17e-56 191
MS.gene34702.t1 MTR_8g014160 35.545 422 188 18 2 402 67 425 3.15e-46 164
MS.gene34702.t1 MTR_8g468810 37.500 336 171 14 1 312 51 371 4.36e-45 160
MS.gene34702.t1 MTR_8g014210 39.669 242 125 8 171 402 1 231 1.47e-40 144
MS.gene34702.t1 MTR_4g024710 38.333 300 153 13 120 402 63 347 4.90e-40 146
MS.gene34702.t1 MTR_5g092960 35.015 337 180 11 3 312 47 371 1.31e-36 138
MS.gene34702.t1 MTR_8g468810 38.431 255 130 10 1 238 51 295 8.98e-36 134
MS.gene34702.t1 MTR_8g468810 38.431 255 130 10 1 238 51 295 1.41e-35 134
MS.gene34702.t1 MTR_8g468810 38.281 256 131 10 1 239 51 296 2.18e-35 134
MS.gene34702.t1 MTR_8g077460 47.973 148 73 4 256 402 231 375 4.31e-34 130
MS.gene34702.t1 MTR_8g077460 37.374 198 97 11 4 185 38 224 1.76e-18 86.7
MS.gene34702.t1 MTR_4g024745 36.332 289 154 13 113 385 10 284 4.10e-29 115
MS.gene34702.t1 MTR_3g099800 63.218 87 31 1 314 399 19 105 1.02e-28 108
MS.gene34702.t1 MTR_8g467800 37.023 262 130 11 2 242 46 293 6.04e-26 107
MS.gene34702.t1 MTR_7g032370 25.304 411 223 15 2 402 16 352 2.39e-23 100
MS.gene34702.t1 MTR_1g041245 26.128 421 220 18 2 402 37 386 5.31e-19 88.6
MS.gene34702.t1 MTR_8g014230 42.857 84 46 2 312 395 17 98 9.21e-17 75.9
MS.gene34702.t1 MTR_5g021550 43.802 121 53 8 4 114 47 162 2.16e-16 76.6
MS.gene34702.t1 MTR_8g014290 38.095 126 61 7 4 115 38 160 2.52e-15 73.6
MS.gene34702.t1 MTR_5g084070 24.570 407 267 14 2 394 39 419 1.42e-12 69.3
MS.gene34702.t1 MTR_7g098510 35.455 110 71 0 293 402 282 391 2.89e-12 68.2
MS.gene34702.t1 MTR_5g080710 25.840 387 253 13 2 374 59 425 6.46e-12 67.4
MS.gene34702.t1 MTR_7g032380 30.994 171 94 7 2 162 37 193 6.44e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34702.t1 AT5G50270 28.155 412 233 18 3 384 30 408 9.40e-15 75.9
MS.gene34702.t1 AT5G44950 27.378 431 255 21 2 399 30 435 7.35e-14 73.2
MS.gene34702.t1 AT3G42770 25.355 422 257 15 2 394 25 417 1.09e-13 73.2
MS.gene34702.t1 AT3G59200 32.934 167 98 6 2 160 33 193 1.30e-13 72.0
MS.gene34702.t1 AT5G56560 24.818 411 273 15 3 402 33 418 1.59e-13 72.4
MS.gene34702.t1 AT3G50710 25.352 426 265 17 3 402 29 427 1.63e-13 72.4
MS.gene34702.t1 AT3G59200 32.934 167 98 6 2 160 33 193 4.08e-13 71.2
MS.gene34702.t1 AT5G56420 23.333 420 274 15 2 402 32 422 4.93e-13 70.9
MS.gene34702.t1 AT5G56420 23.333 420 274 15 2 402 32 422 4.93e-13 70.9
MS.gene34702.t1 AT5G56420 23.333 420 274 15 2 402 32 422 4.93e-13 70.9
MS.gene34702.t1 AT4G13985 23.944 426 284 15 1 399 44 456 1.69e-12 69.3
MS.gene34702.t1 AT2G29930 25.330 454 252 21 2 401 38 458 8.08e-12 67.0
MS.gene34702.t1 AT2G29930 25.330 454 252 21 2 401 38 458 8.08e-12 67.0
MS.gene34702.t1 AT1G16930 23.094 446 261 19 2 402 41 449 1.37e-11 66.2
MS.gene34702.t1 AT1G16930 23.094 446 261 19 2 402 41 449 1.37e-11 66.2
MS.gene34702.t1 AT1G16930 23.094 446 261 19 2 402 41 449 1.37e-11 66.2
MS.gene34702.t1 AT3G59230 34.286 175 98 7 2 163 38 208 3.06e-11 65.5

Find 95 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAAGGTTGAACATTCTT+TGG 0.224083 8.1:-45676991 MS.gene34702:CDS
GGTTGTTGCAGTTGATAAAA+AGG 0.239466 8.1:+45677441 None:intergenic
GTCAACAAACCTTGCTGCTT+TGG 0.276221 8.1:+45676333 None:intergenic
TGAGTCTCGTCTCTCGAAAA+TGG 0.282794 8.1:-45677748 MS.gene34702:CDS
CCAAGTAAAATTGTCATTGA+TGG 0.283232 8.1:+45676794 None:intergenic
TGTTGGCATCTTTCATAGTA+TGG 0.287676 8.1:-45676721 MS.gene34702:CDS
CCACCTTTGGGAGCAACTTC+AGG 0.288030 8.1:-45677723 MS.gene34702:CDS
CTCGAAAATGGCGCCACCTT+TGG 0.297756 8.1:-45677736 MS.gene34702:CDS
TCGAAAATGGCGCCACCTTT+GGG 0.331452 8.1:-45677735 MS.gene34702:CDS
CTCGGATGCTGTTGAGAATA+GGG 0.353987 8.1:+45676649 None:intergenic
GACCCAGCTGGATCATCTTA+AGG 0.354122 8.1:-45675929 None:intergenic
TGAAAACACTGCAGTCTTCT+CGG 0.360875 8.1:-45677023 MS.gene34702:intron
TCTCTCTGGCTGCCCCGTGC+TGG 0.363123 8.1:-45676904 MS.gene34702:CDS
TCGAAAGTTGCCTTTCTCTC+TGG 0.376627 8.1:-45676918 MS.gene34702:CDS
GAGCACACTGTCAACGTAAT+AGG 0.392365 8.1:+45677625 None:intergenic
CACGGGGCAGCCAGAGAGAA+AGG 0.396494 8.1:+45676908 None:intergenic
AACTCTGGATAATTTAGAAC+AGG 0.399784 8.1:+45676455 None:intergenic
TCTCGGATGCTGTTGAGAAT+AGG 0.418151 8.1:+45676648 None:intergenic
TGGACTTACATTGAGTTTGT+TGG 0.422263 8.1:-45676774 MS.gene34702:CDS
ATTGATGGATTTCAACCTCT+TGG 0.423461 8.1:+45676809 None:intergenic
ATATCCTTCTATGTGAATAT+AGG 0.424387 8.1:+45676123 None:intergenic
CGATATAATTTGCGAAACTC+TGG 0.433227 8.1:+45676440 None:intergenic
TTGACCTATATTCACATAGA+AGG 0.438936 8.1:-45676127 MS.gene34702:CDS
GATGTCACAATGGGCATTGT+TGG 0.445070 8.1:-45676738 MS.gene34702:CDS
CTGCCCCGTGCTGGAAACTT+TGG 0.445641 8.1:-45676895 MS.gene34702:CDS
ACGGAACTTTCGAATGTTGC+GGG 0.447410 8.1:+45677589 None:intergenic
CAAACTCGACATATGTGAAC+TGG 0.451905 8.1:-45676943 MS.gene34702:CDS
GAAACTTTGGATACTATCCT+TGG 0.454621 8.1:-45676882 MS.gene34702:CDS
AACCTCTTGGAGCTGGAGAA+AGG 0.461989 8.1:+45676822 None:intergenic
CAACTTAAATTTGACCCAGC+TGG 0.469108 8.1:-45675941 MS.gene34702:CDS
GGATTTCAACCTCTTGGAGC+TGG 0.469371 8.1:+45676815 None:intergenic
CAGAAGATTTGAGTTAAAGC+AGG 0.472414 8.1:+45676400 None:intergenic
GAGATAGAGTTGTTGAAGGT+GGG 0.478321 8.1:+45677505 None:intergenic
AGTTTGAGATGCTTCAATGA+TGG 0.488671 8.1:+45676960 None:intergenic
TTATGAGAACTTGAAGCATA+TGG 0.489867 8.1:+45676357 None:intergenic
TAACCTTAAGATGATCCAGC+TGG 0.490301 8.1:+45675926 None:intergenic
GAAAGGTGGAACAGCAAGCT+TGG 0.492232 8.1:+45676839 None:intergenic
GTGTGGATCCGTGCTGCCAC+TGG 0.500847 8.1:-45677530 MS.gene34702:CDS
CAGCTGGGTCAAATTTAAGT+TGG 0.504406 8.1:+45675942 None:intergenic
GTAACTAAACAATCAGCGTC+TGG 0.505331 8.1:+45677476 None:intergenic
TCCGGCTGCCATGTTCTCAA+TGG 0.513864 8.1:+45676184 None:intergenic
ATTCACATAGAAGGATATCA+AGG 0.519668 8.1:-45676118 MS.gene34702:CDS
ATGTATTCCGATGTCACAAT+GGG 0.521692 8.1:-45676747 MS.gene34702:CDS
GTATCCAAAGTTTCCAGCAC+GGG 0.524915 8.1:+45676891 None:intergenic
CACCTTTCTCCAGCTCCAAG+AGG 0.524936 8.1:-45676824 MS.gene34702:CDS
AACAATGCCCATTGTGACAT+CGG 0.525809 8.1:+45676740 None:intergenic
CCTTGAGATAGAGTTGTTGA+AGG 0.528422 8.1:+45677501 None:intergenic
AAGATTAACAAATGTATCGA+AGG 0.530416 8.1:-45675978 MS.gene34702:CDS
TTCGAATGTTGCGGGATCTG+CGG 0.532075 8.1:+45677597 None:intergenic
TTGTTAATCTTCTGATAGAA+CGG 0.532814 8.1:+45675990 None:intergenic
TTTGCGTCATTCAACATCAA+AGG 0.544190 8.1:-45676589 MS.gene34702:intron
GACGGAACTTTCGAATGTTG+CGG 0.546251 8.1:+45677588 None:intergenic
TGAGATAGAGTTGTTGAAGG+TGG 0.549898 8.1:+45677504 None:intergenic
TCTCGGTGCAATCGAAATGA+AGG 0.552075 8.1:-45677006 MS.gene34702:CDS
AACAACCACCATTGAGAACA+TGG 0.552420 8.1:-45676192 MS.gene34702:CDS
GGTCTTCAACCTCGATGACT+CGG 0.553196 8.1:-45677702 MS.gene34702:CDS
ACTTACATTGAGTTTGTTGG+TGG 0.553897 8.1:-45676771 MS.gene34702:CDS
AGATAGAGTTGTTGAAGGTG+GGG 0.554762 8.1:+45677506 None:intergenic
GTTGAATGACGCAAAAGTAA+TGG 0.560252 8.1:+45676597 None:intergenic
ACCATTGAGAACATGGCAGC+CGG 0.564288 8.1:-45676185 MS.gene34702:CDS
CCGCGTATCCACAGCTGAGA+CGG 0.564606 8.1:+45677570 None:intergenic
TTGTTGAAGGTGGGGTCCAG+TGG 0.565930 8.1:+45677514 None:intergenic
AAGGTATGTCTCTGTATCCA+AGG 0.569147 8.1:+45676865 None:intergenic
AACCTTAAGATGATCCAGCT+GGG 0.574081 8.1:+45675927 None:intergenic
TGTCATCTCGAAGGTAATCT+CGG 0.576572 8.1:+45676631 None:intergenic
GGCTGCCATGTTCTCAATGG+TGG 0.577603 8.1:+45676187 None:intergenic
AGAAGATTTGAGTTAAAGCA+GGG 0.583843 8.1:+45676401 None:intergenic
TCAGAAACTCTTGTTGACTC+CGG 0.591556 8.1:+45676166 None:intergenic
CCTGAAGTTGCTCCCAAAGG+TGG 0.593150 8.1:+45677723 None:intergenic
CAACCTCGATGACTCGGACC+CGG 0.595502 8.1:-45677696 MS.gene34702:CDS
CTATGTGAATATAGGTCAAG+TGG 0.596217 8.1:+45676131 None:intergenic
TATGTATTCCGATGTCACAA+TGG 0.598832 8.1:-45676748 MS.gene34702:CDS
CGAAAGTTCCGTCTCAGCTG+TGG 0.601146 8.1:-45677578 MS.gene34702:CDS
GGTGGGGTCCAGTGGCAGCA+CGG 0.611355 8.1:+45677522 None:intergenic
TTTAGAACAGGGGTATGAAG+TGG 0.615375 8.1:+45676467 None:intergenic
CCGTCTCAGCTGTGGATACG+CGG 0.621941 8.1:-45677570 MS.gene34702:CDS
AGATTAACAAATGTATCGAA+GGG 0.622978 8.1:-45675977 MS.gene34702:CDS
TCTCATAATCCAAAGCAGCA+AGG 0.625493 8.1:-45676342 MS.gene34702:intron
AGACCTGAAGTTGCTCCCAA+AGG 0.633050 8.1:+45677720 None:intergenic
TGGCATCTTTCATAGTATGG+TGG 0.633161 8.1:-45676718 MS.gene34702:CDS
CCTTCAACAACTCTATCTCA+AGG 0.634083 8.1:-45677501 MS.gene34702:CDS
GGAACAGCAAGCTTGGTCAA+AGG 0.634890 8.1:+45676846 None:intergenic
AGTATCCAAAGTTTCCAGCA+CGG 0.634951 8.1:+45676890 None:intergenic
ATGAGAACAAGTTTAAAGTG+TGG 0.635470 8.1:-45677547 MS.gene34702:CDS
CTCTTGGAGCTGGAGAAAGG+TGG 0.641361 8.1:+45676825 None:intergenic
ACTCTGGATAATTTAGAACA+GGG 0.645860 8.1:+45676456 None:intergenic
TTTGTAATCACAGCGATGGG+GGG 0.647817 8.1:+45677664 None:intergenic
TATGTGAATATAGGTCAAGT+GGG 0.652099 8.1:+45676132 None:intergenic
CTCTGGATAATTTAGAACAG+GGG 0.658606 8.1:+45676457 None:intergenic
AGATTACCTTCGAGATGACA+CGG 0.668565 8.1:-45676628 MS.gene34702:CDS
CTTCACCCGTGTCATCTCGA+AGG 0.669606 8.1:+45676622 None:intergenic
TATCCAAAGTTTCCAGCACG+GGG 0.677397 8.1:+45676892 None:intergenic
TAACTTACGTGAGGGAAACG+AGG 0.688969 8.1:+45677420 None:intergenic
GATTACCTTCGAGATGACAC+GGG 0.692580 8.1:-45676627 MS.gene34702:CDS
AGACCGGGTCCGAGTCATCG+AGG 0.724271 8.1:+45677693 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTTATTTAATCAATCTT+TGG - chr8.1:45677375-45677394 MS.gene34702:intron 15.0%
!!! AAGTAAATAACATATGTTTT+AGG + chr8.1:45676448-45676467 None:intergenic 15.0%
!!! AGTAAATAACATATGTTTTA+GGG + chr8.1:45676447-45676466 None:intergenic 15.0%
!!! GTAAGTTATAATTTTACAAA+GGG + chr8.1:45676309-45676328 None:intergenic 15.0%
!!! TGTAAGTTATAATTTTACAA+AGG + chr8.1:45676310-45676329 None:intergenic 15.0%
!! ACAAATATATTATTGAGTCA+TGG - chr8.1:45677437-45677456 MS.gene34702:CDS 20.0%
!! ATAGGATTAAAACAAATTTG+AGG + chr8.1:45676551-45676570 None:intergenic 20.0%
!!! AAGGTGATGTTTTATTTTTA+TGG - chr8.1:45677110-45677129 MS.gene34702:intron 20.0%
!!! CATTTGTTGAATATATTTTG+CGG - chr8.1:45677602-45677621 MS.gene34702:CDS 20.0%
!!! TGTTTTTGTTGATATTTCAA+TGG - chr8.1:45677651-45677670 MS.gene34702:CDS 20.0%
! AAGATTAACAAATGTATCGA+AGG - chr8.1:45677702-45677721 MS.gene34702:CDS 25.0%
! AGATTAACAAATGTATCGAA+GGG - chr8.1:45677703-45677722 MS.gene34702:CDS 25.0%
! ATAAGCTTGTAAGAAAGTAA+CGG - chr8.1:45676341-45676360 MS.gene34702:intron 25.0%
! ATATCCTTCTATGTGAATAT+AGG + chr8.1:45677560-45677579 None:intergenic 25.0%
! CTCAATAATATATTTGTGTG+CGG + chr8.1:45677434-45677453 None:intergenic 25.0%
! TAAAACTCTAGCAATTTCAT+AGG + chr8.1:45676569-45676588 None:intergenic 25.0%
! TTGTTAATCTTCTGATAGAA+CGG + chr8.1:45677693-45677712 None:intergenic 25.0%
!!! GCTAACTCTACTTTTTTATA+GGG + chr8.1:45676518-45676537 None:intergenic 25.0%
AATGAAGGTTGAACATTCTT+TGG - chr8.1:45676689-45676708 MS.gene34702:CDS 30.0%
ATTCACATAGAAGGATATCA+AGG - chr8.1:45677562-45677581 MS.gene34702:CDS 30.0%
CCAAGTAAAATTGTCATTGA+TGG + chr8.1:45676889-45676908 None:intergenic 30.0%
CTGACTACAAAAGATCTATT+GGG + chr8.1:45676370-45676389 None:intergenic 30.0%
TATATTATTGAGTCATGGCA+TGG - chr8.1:45677442-45677461 MS.gene34702:CDS 30.0%
TATGTGAATATAGGTCAAGT+GGG + chr8.1:45677551-45677570 None:intergenic 30.0%
TCTGACTACAAAAGATCTAT+TGG + chr8.1:45676371-45676390 None:intergenic 30.0%
TTATGAGAACTTGAAGCATA+TGG + chr8.1:45677326-45677345 None:intergenic 30.0%
TTCTCAATGAAATGAAGCTA+GGG + chr8.1:45676495-45676514 None:intergenic 30.0%
TTGACCTATATTCACATAGA+AGG - chr8.1:45677553-45677572 MS.gene34702:CDS 30.0%
! AACTCTGGATAATTTAGAAC+AGG + chr8.1:45677228-45677247 None:intergenic 30.0%
! ACTCTGGATAATTTAGAACA+GGG + chr8.1:45677227-45677246 None:intergenic 30.0%
! AGAAGATTTGAGTTAAAGCA+GGG + chr8.1:45677282-45677301 None:intergenic 30.0%
! ATGAGAACAAGTTTAAAGTG+TGG - chr8.1:45676133-45676152 MS.gene34702:CDS 30.0%
! CCATCAATGACAATTTTACT+TGG - chr8.1:45676886-45676905 MS.gene34702:CDS 30.0%
! GTTGAATATATTTTGCGGAA+CGG - chr8.1:45677607-45677626 MS.gene34702:CDS 30.0%
!! AGTTGATAAAAAGGGAAGAA+GGG + chr8.1:45676233-45676252 None:intergenic 30.0%
!! GTTGTTGCAGTTGATAAAAA+GGG + chr8.1:45676241-45676260 None:intergenic 30.0%
!!! CATATGTTTTAGGGTTTGTT+TGG + chr8.1:45676438-45676457 None:intergenic 30.0%
!!! GGCTAACTCTACTTTTTTAT+AGG + chr8.1:45676519-45676538 None:intergenic 30.0%
ATGTATTCCGATGTCACAAT+GGG - chr8.1:45676933-45676952 MS.gene34702:CDS 35.0%
CTATGTGAATATAGGTCAAG+TGG + chr8.1:45677552-45677571 None:intergenic 35.0%
GAAACTTTGGATACTATCCT+TGG - chr8.1:45676798-45676817 MS.gene34702:CDS 35.0%
GTTCTCAATGAAATGAAGCT+AGG + chr8.1:45676496-45676515 None:intergenic 35.0%
GTTGAATGACGCAAAAGTAA+TGG + chr8.1:45677086-45677105 None:intergenic 35.0%
TACACGAAAACAACAAGTGA+TGG + chr8.1:45677183-45677202 None:intergenic 35.0%
TATGTATTCCGATGTCACAA+TGG - chr8.1:45676932-45676951 MS.gene34702:CDS 35.0%
TGGACTTACATTGAGTTTGT+TGG - chr8.1:45676906-45676925 MS.gene34702:CDS 35.0%
TGTTGGCATCTTTCATAGTA+TGG - chr8.1:45676959-45676978 MS.gene34702:CDS 35.0%
TTTGCGTCATTCAACATCAA+AGG - chr8.1:45677091-45677110 MS.gene34702:intron 35.0%
! ACAAATTTGAGGCATAAGTC+AGG + chr8.1:45676540-45676559 None:intergenic 35.0%
! ACTGCAGTGTTTTCAAAAGA+CGG + chr8.1:45676652-45676671 None:intergenic 35.0%
! ACTTTTTGTAATCACAGCGA+TGG + chr8.1:45676023-45676042 None:intergenic 35.0%
! AGTTTGAGATGCTTCAATGA+TGG + chr8.1:45676723-45676742 None:intergenic 35.0%
! CAGAAGATTTGAGTTAAAGC+AGG + chr8.1:45677283-45677302 None:intergenic 35.0%
! CGATATAATTTGCGAAACTC+TGG + chr8.1:45677243-45677262 None:intergenic 35.0%
! CTCTGGATAATTTAGAACAG+GGG + chr8.1:45677226-45677245 None:intergenic 35.0%
! CTTTTTGTAATCACAGCGAT+GGG + chr8.1:45676022-45676041 None:intergenic 35.0%
! TACACCACTTGTTACTACAA+TGG - chr8.1:45676281-45676300 MS.gene34702:intron 35.0%
! TTTTTGTAATCACAGCGATG+GGG + chr8.1:45676021-45676040 None:intergenic 35.0%
!! ACTTACATTGAGTTTGTTGG+TGG - chr8.1:45676909-45676928 MS.gene34702:CDS 35.0%
!! ATTGATGGATTTCAACCTCT+TGG + chr8.1:45676874-45676893 None:intergenic 35.0%
!! CAGTTGATAAAAAGGGAAGA+AGG + chr8.1:45676234-45676253 None:intergenic 35.0%
!! GGTTGTTGCAGTTGATAAAA+AGG + chr8.1:45676242-45676261 None:intergenic 35.0%
AACAACCACCATTGAGAACA+TGG - chr8.1:45677488-45677507 MS.gene34702:CDS 40.0%
AACAATGCCCATTGTGACAT+CGG + chr8.1:45676943-45676962 None:intergenic 40.0%
AAGGTATGTCTCTGTATCCA+AGG + chr8.1:45676818-45676837 None:intergenic 40.0%
AAGTGGTGTAACTTACGTGA+GGG + chr8.1:45676271-45676290 None:intergenic 40.0%
AGATAGAGTTGTTGAAGGTG+GGG + chr8.1:45676177-45676196 None:intergenic 40.0%
AGATTACCTTCGAGATGACA+CGG - chr8.1:45677052-45677071 MS.gene34702:intron 40.0%
AGTATCCAAAGTTTCCAGCA+CGG + chr8.1:45676793-45676812 None:intergenic 40.0%
CAAACTCGACATATGTGAAC+TGG - chr8.1:45676737-45676756 MS.gene34702:CDS 40.0%
CAACTTAAATTTGACCCAGC+TGG - chr8.1:45677739-45677758 MS.gene34702:CDS 40.0%
CAGCTGGGTCAAATTTAAGT+TGG + chr8.1:45677741-45677760 None:intergenic 40.0%
CCTTCAACAACTCTATCTCA+AGG - chr8.1:45676179-45676198 MS.gene34702:CDS 40.0%
CCTTGAGATAGAGTTGTTGA+AGG + chr8.1:45676182-45676201 None:intergenic 40.0%
GAGATAGAGTTGTTGAAGGT+GGG + chr8.1:45676178-45676197 None:intergenic 40.0%
GTAACTAAACAATCAGCGTC+TGG + chr8.1:45676207-45676226 None:intergenic 40.0%
TCTCATAATCCAAAGCAGCA+AGG - chr8.1:45677338-45677357 MS.gene34702:intron 40.0%
TGAAAACACTGCAGTCTTCT+CGG - chr8.1:45676657-45676676 MS.gene34702:CDS 40.0%
TGAGATAGAGTTGTTGAAGG+TGG + chr8.1:45676179-45676198 None:intergenic 40.0%
TGGCATCTTTCATAGTATGG+TGG - chr8.1:45676962-45676981 MS.gene34702:CDS 40.0%
TGTCATCTCGAAGGTAATCT+CGG + chr8.1:45677052-45677071 None:intergenic 40.0%
! TGTTTTCAAAAGACGGACAC+AGG + chr8.1:45676645-45676664 None:intergenic 40.0%
! TTGTTTTCGTGTACAACCAG+TGG - chr8.1:45677190-45677209 MS.gene34702:intron 40.0%
! TTTAGAACAGGGGTATGAAG+TGG + chr8.1:45677216-45677235 None:intergenic 40.0%
! TTTTGTAATCACAGCGATGG+GGG + chr8.1:45676020-45676039 None:intergenic 40.0%
!! TCAGAAACTCTTGTTGACTC+CGG + chr8.1:45677517-45677536 None:intergenic 40.0%
ACGGAACTTTCGAATGTTGC+GGG + chr8.1:45676094-45676113 None:intergenic 45.0%
CAAGTGGTGTAACTTACGTG+AGG + chr8.1:45676272-45676291 None:intergenic 45.0%
CTCGGATGCTGTTGAGAATA+GGG + chr8.1:45677034-45677053 None:intergenic 45.0%
GACGGAACTTTCGAATGTTG+CGG + chr8.1:45676095-45676114 None:intergenic 45.0%
GAGCACACTGTCAACGTAAT+AGG + chr8.1:45676058-45676077 None:intergenic 45.0%
GATTACCTTCGAGATGACAC+GGG - chr8.1:45677053-45677072 MS.gene34702:intron 45.0%
GGAGCCATTGTAGTAACAAG+TGG + chr8.1:45676288-45676307 None:intergenic 45.0%
GTATCCAAAGTTTCCAGCAC+GGG + chr8.1:45676792-45676811 None:intergenic 45.0%
TAACTTACGTGAGGGAAACG+AGG + chr8.1:45676263-45676282 None:intergenic 45.0%
TATCCAAAGTTTCCAGCACG+GGG + chr8.1:45676791-45676810 None:intergenic 45.0%
TCGAAAGTTGCCTTTCTCTC+TGG - chr8.1:45676762-45676781 MS.gene34702:CDS 45.0%
TCTCGGATGCTGTTGAGAAT+AGG + chr8.1:45677035-45677054 None:intergenic 45.0%
TGAGTCTCGTCTCTCGAAAA+TGG - chr8.1:45675932-45675951 MS.gene34702:CDS 45.0%
TTTGTAATCACAGCGATGGG+GGG + chr8.1:45676019-45676038 None:intergenic 45.0%
! GATGTCACAATGGGCATTGT+TGG - chr8.1:45676942-45676961 MS.gene34702:CDS 45.0%
! GTCAACAAACCTTGCTGCTT+TGG + chr8.1:45677350-45677369 None:intergenic 45.0%
! TCTCGGTGCAATCGAAATGA+AGG - chr8.1:45676674-45676693 MS.gene34702:CDS 45.0%
AACCTCTTGGAGCTGGAGAA+AGG + chr8.1:45676861-45676880 None:intergenic 50.0%
ACCATTGAGAACATGGCAGC+CGG - chr8.1:45677495-45677514 MS.gene34702:CDS 50.0%
AGACCTGAAGTTGCTCCCAA+AGG + chr8.1:45675963-45675982 None:intergenic 50.0%
GAAAGGTGGAACAGCAAGCT+TGG + chr8.1:45676844-45676863 None:intergenic 50.0%
GGAACAGCAAGCTTGGTCAA+AGG + chr8.1:45676837-45676856 None:intergenic 50.0%
GGATTTCAACCTCTTGGAGC+TGG + chr8.1:45676868-45676887 None:intergenic 50.0%
GGTCTTCAACCTCGATGACT+CGG - chr8.1:45675978-45675997 MS.gene34702:CDS 50.0%
GTTCCTCCTGCCAGCAATAA+GGG + chr8.1:45677471-45677490 None:intergenic 50.0%
TCGAAAATGGCGCCACCTTT+GGG - chr8.1:45675945-45675964 MS.gene34702:CDS 50.0%
TGTTCCTCCTGCCAGCAATA+AGG + chr8.1:45677472-45677491 None:intergenic 50.0%
TTCGAATGTTGCGGGATCTG+CGG + chr8.1:45676086-45676105 None:intergenic 50.0%
CACCTTTCTCCAGCTCCAAG+AGG - chr8.1:45676856-45676875 MS.gene34702:CDS 55.0%
CCTGAAGTTGCTCCCAAAGG+TGG + chr8.1:45675960-45675979 None:intergenic 55.0%
CGAAAGTTCCGTCTCAGCTG+TGG - chr8.1:45676102-45676121 MS.gene34702:CDS 55.0%
CTCGAAAATGGCGCCACCTT+TGG - chr8.1:45675944-45675963 MS.gene34702:CDS 55.0%
CTCTTGGAGCTGGAGAAAGG+TGG + chr8.1:45676858-45676877 None:intergenic 55.0%
CTTCACCCGTGTCATCTCGA+AGG + chr8.1:45677061-45677080 None:intergenic 55.0%
GGCATGGTGTCCCTTATTGC+TGG - chr8.1:45677458-45677477 MS.gene34702:CDS 55.0%
GGCTGCCATGTTCTCAATGG+TGG + chr8.1:45677496-45677515 None:intergenic 55.0%
TCCGGCTGCCATGTTCTCAA+TGG + chr8.1:45677499-45677518 None:intergenic 55.0%
TGGTGTCCCTTATTGCTGGC+AGG - chr8.1:45677462-45677481 MS.gene34702:CDS 55.0%
TGTCCCTTATTGCTGGCAGG+AGG - chr8.1:45677465-45677484 MS.gene34702:CDS 55.0%
TTGTTGAAGGTGGGGTCCAG+TGG + chr8.1:45676169-45676188 None:intergenic 55.0%
! CCACCTTTGGGAGCAACTTC+AGG - chr8.1:45675957-45675976 MS.gene34702:CDS 55.0%
CCGCGTATCCACAGCTGAGA+CGG + chr8.1:45676113-45676132 None:intergenic 60.0%
CCGTCTCAGCTGTGGATACG+CGG - chr8.1:45676110-45676129 MS.gene34702:CDS 60.0%
CTGCCCCGTGCTGGAAACTT+TGG - chr8.1:45676785-45676804 MS.gene34702:CDS 60.0%
! CAACCTCGATGACTCGGACC+CGG - chr8.1:45675984-45676003 MS.gene34702:CDS 60.0%
! CAGGGGTATGAAGTGGCCAC+TGG + chr8.1:45677209-45677228 None:intergenic 60.0%
AGACCGGGTCCGAGTCATCG+AGG + chr8.1:45675990-45676009 None:intergenic 65.0%
CACGGGGCAGCCAGAGAGAA+AGG + chr8.1:45676775-45676794 None:intergenic 65.0%
GTGTGGATCCGTGCTGCCAC+TGG - chr8.1:45676150-45676169 MS.gene34702:CDS 65.0%
!! CGATGGGGGGTGTCGAAGAC+CGG + chr8.1:45676006-45676025 None:intergenic 65.0%
!! GATGGGGGGTGTCGAAGACC+GGG + chr8.1:45676005-45676024 None:intergenic 65.0%
GGTGGGGTCCAGTGGCAGCA+CGG + chr8.1:45676161-45676180 None:intergenic 70.0%
TCTCTCTGGCTGCCCCGTGC+TGG - chr8.1:45676776-45676795 MS.gene34702:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 45675931 45677771 45675931 ID=MS.gene34702
chr8.1 mRNA 45675931 45677771 45675931 ID=MS.gene34702.t1;Parent=MS.gene34702
chr8.1 exon 45677428 45677771 45677428 ID=MS.gene34702.t1.exon1;Parent=MS.gene34702.t1
chr8.1 CDS 45677428 45677771 45677428 ID=cds.MS.gene34702.t1;Parent=MS.gene34702.t1
chr8.1 exon 45676590 45677031 45676590 ID=MS.gene34702.t1.exon2;Parent=MS.gene34702.t1
chr8.1 CDS 45676590 45677031 45676590 ID=cds.MS.gene34702.t1;Parent=MS.gene34702.t1
chr8.1 exon 45676343 45676492 45676343 ID=MS.gene34702.t1.exon3;Parent=MS.gene34702.t1
chr8.1 CDS 45676343 45676492 45676343 ID=cds.MS.gene34702.t1;Parent=MS.gene34702.t1
chr8.1 exon 45675931 45676218 45675931 ID=MS.gene34702.t1.exon4;Parent=MS.gene34702.t1
chr8.1 CDS 45675931 45676218 45675931 ID=cds.MS.gene34702.t1;Parent=MS.gene34702.t1
Gene Sequence

>MS.gene34702

ATGAGTCTCGTCTCTCGAAAATGGCGCCACCTTTGGGAGCAACTTCAGGTCTTCAACCTCGATGACTCGGACCCGGTCTTCGACACCCCCCATCGCTGTGATTACAAAAAGTTCAAAAAGTTTGCCTATTACGTTGACAGTGTGCTCGCTCTCCGCAGATCCCGCAACATTCGAAAGTTCCGTCTCAGCTGTGGATACGCGGATGAGAACAAGTTTAAAGTGTGGATCCGTGCTGCCACTGGACCCCACCTTCAACAACTCTATCTCAAGGTTCCAGACGCTGATTGTTTAGTTACACTCCCTTCTTCCCTTTTTATCAACTGCAACAACCTCGTTTCCCTCACGTAAGTTACACCACTTGTTACTACAATGGCTCCCTTTGTAAAATTATAACTTACAAGCTATAAACTATAAGCTTGTAAGAAAGTAACGGTAACCCAATAGATCTTTTGTAGTCAGATGAGCTTAAAAGACATAAGTTATAAGCTATAAAATTATGTTATACCAAACAAACCCTAAAACATATGTTATTTACTTTTTTTTTTTTTTCGATTTTGTTTTCCCTAGCTTCATTTCATTGAGAACCCTATAAAAAAGTAGAGTTAGCCTGACTTATGCCTCAAATTTGTTTTAATCCTATGAAATTGCTAGAGTTTTACAGATTATGTCTAAATTTCTAATAAGTAAACAAATATACATTGTTATCTATAACCTGTGTCCGTCTTTTGAAAACACTGCAGTCTTCTCGGTGCAATCGAAATGAAGGTTGAACATTCTTTGGTTCATTTTCCATCATTGAAGCATCTCAAACTCGACATATGTGAACTGGATTCGAAAGTTGCCTTTCTCTCTGGCTGCCCCGTGCTGGAAACTTTGGATACTATCCTTGGATACAGAGACATACCTTTGACCAAGCTTGCTGTTCCACCTTTCTCCAGCTCCAAGAGGTTGAAATCCATCAATGACAATTTTACTTGGACTTACATTGAGTTTGTTGGTGGTATGTATTCCGATGTCACAATGGGCATTGTTGGCATCTTTCATAGTATGGTGGAAGCATTTCTTGATGTCTTTTTCTCGAGTGAGAGTGAATTTGTCGACCCTATTCTCAACAGCATCCGAGATTACCTTCGAGATGACACGGGTGAAGTTCCATTACTTTTGCGTCATTCAACATCAAAGGTGATGTTTTATTTTTATGGTTTATATGTTTTTATATCTGTAAATTGTAATTCGTACTAATATTGCACCATCACTTGTTGTTTTCGTGTACAACCAGTGGCCACTTCATACCCCTGTTCTAAATTATCCAGAGTTTCGCAAATTATATCGTCTAAAGTTCATTCTTCCCTGCTTTAACTCAAATCTTCTGCTCAACGTGCTTGAGAAATGCCATATGCTTCAAGTTCTCATAATCCAAAGCAGCAAGGTTTGTTGACTTCTCAAGTTTATTTAATCAATCTTTGGTCTGTCTATATATATGCACGCATATGTATCTATCCGCACACAAATATATTATTGAGTCATGGCATGGTGTCCCTTATTGCTGGCAGGAGGAACAACCACCATTGAGAACATGGCAGCCGGAGTCAACAAGAGTTTCTGAATGTCTCAAGTCCCACTTGACCTATATTCACATAGAAGGATATCAAGGACTTGAAGATGAGCTGACATTTGTTGAATATATTTTGCGGAACGGACTTGTTTTGAAGACAATGCTTGTTTTTGTTGATATTTCAATGGACATAACGAACAAGTACCGTTCTATCAGAAGATTAACAAATGTATCGAAGGGCTCTGTCAATTGCCAACTTAAATTTGACCCAGCTGGATCATCTTAA
Protein sequence

>MS.gene34702.t1

MSLVSRKWRHLWEQLQVFNLDDSDPVFDTPHRCDYKKFKKFAYYVDSVLALRRSRNIRKFRLSCGYADENKFKVWIRAATGPHLQQLYLKVPDADCLVTLPSSLFINCNNLVSLTLLGAIEMKVEHSLVHFPSLKHLKLDICELDSKVAFLSGCPVLETLDTILGYRDIPLTKLAVPPFSSSKRLKSINDNFTWTYIEFVGGMYSDVTMGIVGIFHSMVEAFLDVFFSSESEFVDPILNSIRDYLRDDTGEVPLLLRHSTSKWPLHTPVLNYPEFRKLYRLKFILPCFNSNLLLNVLEKCHMLQVLIIQSSKEEQPPLRTWQPESTRVSECLKSHLTYIHIEGYQGLEDELTFVEYILRNGLVLKTMLVFVDISMDITNKYRSIRRLTNVSKGSVNCQLKFDPAGSS