AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36802

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36802.t1 MTR_4g024710 68.562 299 91 2 15 312 51 347 6.88e-144 409
MS.gene36802.t1 MTR_8g014260 68.493 292 87 4 23 312 163 451 3.69e-129 376
MS.gene36802.t1 MTR_4g024745 66.182 275 90 2 22 295 12 284 1.42e-118 343
MS.gene36802.t1 MTR_8g445780 64.898 245 83 2 22 266 149 390 9.01e-99 296
MS.gene36802.t1 MTR_8g014210 61.638 232 88 1 81 312 1 231 1.24e-91 273
MS.gene36802.t1 MTR_2g083840 45.638 298 151 8 22 312 164 457 5.26e-65 212
MS.gene36802.t1 MTR_8g467800 43.322 307 155 10 25 317 157 458 4.12e-61 201
MS.gene36802.t1 MTR_8g077460 68.276 145 46 0 168 312 231 375 1.07e-60 198
MS.gene36802.t1 MTR_8g062270 43.189 301 152 9 22 311 161 453 5.83e-58 193
MS.gene36802.t1 MTR_8g058970 44.918 305 149 9 22 312 178 477 8.23e-58 193
MS.gene36802.t1 MTR_5g092960 45.683 278 132 7 48 311 189 461 2.91e-57 191
MS.gene36802.t1 MTR_8g468810 42.904 303 155 10 22 312 167 463 2.00e-56 189
MS.gene36802.t1 MTR_8g014160 41.554 296 111 5 22 312 187 425 7.66e-55 184
MS.gene36802.t1 MTR_8g468840 40.940 298 159 11 22 309 157 447 8.11e-46 161
MS.gene36802.t1 MTR_8g468760 39.000 300 137 8 22 311 155 418 6.49e-45 158
MS.gene36802.t1 MTR_4g032730 39.873 316 150 11 25 311 162 466 1.06e-44 159
MS.gene36802.t1 MTR_8g062310 38.676 287 148 12 37 317 169 433 1.11e-38 142
MS.gene36802.t1 MTR_8g070950 35.099 302 175 11 23 317 152 439 1.70e-38 141
MS.gene36802.t1 MTR_8g062010 37.179 312 155 12 22 316 147 434 2.94e-38 140
MS.gene36802.t1 MTR_8g469020 36.943 314 174 12 22 317 149 456 1.44e-37 139
MS.gene36802.t1 MTR_8g058965 37.700 313 170 12 22 316 155 460 5.27e-36 135
MS.gene36802.t1 MTR_8g062080 32.803 314 164 11 22 316 164 449 1.72e-33 128
MS.gene36802.t1 MTR_8g014230 63.636 88 31 1 225 312 18 104 2.90e-33 119
MS.gene36802.t1 MTR_8g062300 32.166 314 182 8 22 316 180 481 1.19e-30 120
MS.gene36802.t1 MTR_8g468810 42.512 207 108 7 22 222 167 368 3.39e-30 118
MS.gene36802.t1 MTR_2g086020 49.660 147 70 4 174 317 175 320 3.32e-29 114
MS.gene36802.t1 MTR_5g092960 45.000 180 88 4 48 219 189 365 6.65e-27 109
MS.gene36802.t1 MTR_4g050250 35.632 261 136 11 22 258 167 419 3.14e-26 107
MS.gene36802.t1 MTR_8g468810 39.521 167 93 4 22 188 167 325 7.89e-23 97.1
MS.gene36802.t1 MTR_8g468810 40.523 153 87 3 22 174 167 315 4.35e-22 95.1
MS.gene36802.t1 MTR_8g468810 40.523 153 87 3 22 174 167 315 5.30e-22 95.1
MS.gene36802.t1 MTR_8g467800 43.226 155 81 6 25 174 157 309 3.41e-21 92.8
MS.gene36802.t1 MTR_5g084070 30.000 260 166 9 52 304 169 419 1.14e-15 77.4
MS.gene36802.t1 MTR_4g080787 27.950 322 204 11 18 318 161 475 1.07e-14 74.7
MS.gene36802.t1 MTR_5g080710 30.451 266 163 12 51 304 191 446 3.79e-13 70.1
MS.gene36802.t1 MTR_7g098510 36.364 132 77 4 188 312 260 391 3.96e-12 66.6
MS.gene36802.t1 MTR_5g039950 29.804 255 145 9 37 281 158 388 6.72e-12 66.2
MS.gene36802.t1 MTR_1g041245 31.687 243 134 11 88 312 158 386 6.89e-12 66.2
MS.gene36802.t1 MTR_3g099800 40.741 81 45 2 226 303 19 99 5.46e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36802.t1 AT4G26340 30.033 303 195 6 17 312 127 419 2.79e-30 119
MS.gene36802.t1 AT3G49030 30.662 287 174 11 37 311 167 440 1.55e-20 92.0
MS.gene36802.t1 AT5G56800 29.682 283 170 13 41 311 78 343 1.55e-18 85.5
MS.gene36802.t1 AT1G32375 26.962 293 193 7 29 312 142 422 9.59e-18 83.6
MS.gene36802.t1 AT1G32375 26.962 293 193 7 29 312 142 422 9.59e-18 83.6
MS.gene36802.t1 AT3G50710 31.293 294 167 13 37 312 151 427 1.16e-17 83.6
MS.gene36802.t1 AT5G38570 27.241 290 193 7 27 314 105 378 8.74e-17 80.5
MS.gene36802.t1 AT3G49030 28.873 284 157 11 37 311 167 414 8.84e-17 80.9
MS.gene36802.t1 AT5G56420 27.645 293 182 11 33 312 147 422 3.52e-16 79.0
MS.gene36802.t1 AT5G56420 27.645 293 182 11 33 312 147 422 3.52e-16 79.0
MS.gene36802.t1 AT5G56420 27.645 293 182 11 33 312 147 422 3.52e-16 79.0
MS.gene36802.t1 AT5G56560 27.055 292 179 11 36 312 335 607 4.90e-16 79.0
MS.gene36802.t1 AT4G00160 29.412 306 180 13 34 319 160 449 1.50e-15 77.4
MS.gene36802.t1 AT2G04230 26.415 318 203 12 15 313 142 447 2.17e-15 77.0
MS.gene36802.t1 AT3G26920 28.070 285 184 11 37 311 66 339 3.29e-15 75.9
MS.gene36802.t1 AT3G26920 28.070 285 184 11 37 311 66 339 3.29e-15 75.9
MS.gene36802.t1 AT3G54910 27.273 297 186 10 25 312 98 373 1.29e-14 74.3
MS.gene36802.t1 AT3G54910 27.273 297 186 10 25 312 98 373 1.29e-14 74.3
MS.gene36802.t1 AT3G54910 27.273 297 186 10 25 312 98 373 1.29e-14 74.3
MS.gene36802.t1 AT5G38590 28.016 257 162 9 35 282 144 386 3.43e-14 73.2
MS.gene36802.t1 AT5G56560 26.298 289 178 12 39 312 150 418 7.95e-14 72.0
MS.gene36802.t1 AT1G51055 34.351 131 73 4 190 312 36 161 2.00e-13 67.4
MS.gene36802.t1 AT4G13965 29.825 285 176 12 35 309 150 420 4.09e-13 70.1
MS.gene36802.t1 AT2G26860 29.008 262 161 8 36 284 151 400 4.98e-13 69.7
MS.gene36802.t1 AT2G26860 29.008 262 161 8 36 284 151 400 4.98e-13 69.7
MS.gene36802.t1 AT4G26350 28.136 295 182 10 36 312 146 428 6.24e-12 66.2
MS.gene36802.t1 AT5G44950 26.644 289 186 11 37 305 150 432 2.73e-11 64.3
MS.gene36802.t1 AT5G56570 25.806 248 154 10 76 312 211 439 3.08e-11 64.3
MS.gene36802.t1 AT4G10420 25.795 283 186 10 37 311 55 321 3.94e-11 63.5
MS.gene36802.t1 AT1G51370 28.223 287 177 11 37 307 157 430 4.08e-11 63.9
MS.gene36802.t1 AT5G56452 29.565 230 114 10 103 312 26 227 9.38e-11 61.2

Find 69 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACCTTTATTCAATTTAA+AGG 0.140904 8.3:-74595723 MS.gene36802:CDS
AGCATCAGAATTTCTATGTT+TGG 0.242718 8.3:+74596617 None:intergenic
TAATTGTTGTAGAGCTTTGT+AGG 0.290039 8.3:+74596720 None:intergenic
AAAACCTTTAAATTGAATAA+AGG 0.336412 8.3:+74595719 None:intergenic
GCATCAGAATTTCTATGTTT+GGG 0.353701 8.3:+74596618 None:intergenic
AGGTGCGATATGAGACAATT+AGG 0.354804 8.3:+74595744 None:intergenic
AAGCAAGCAAAGTAGTGAAT+TGG 0.363036 8.3:+74596037 None:intergenic
CATCTAGGAGCTTGAGTAAT+GGG 0.366341 8.3:+74596357 None:intergenic
CAAAACTTAACCTTAGTTGT+TGG 0.373804 8.3:+74596299 None:intergenic
CATCTCTATCCCATGTCGTT+TGG 0.377720 8.3:-74596389 MS.gene36802:CDS
TGTGGAGCCCATCCTAAAAT+TGG 0.389214 8.3:+74595777 None:intergenic
ATTTAGAGCTCATGCTGACC+TGG 0.395215 8.3:-74596067 MS.gene36802:CDS
GATTATTTCTGATATTTCCT+TGG 0.407803 8.3:-74595628 MS.gene36802:CDS
AACATCATGGAATGGGCATT+GGG 0.425635 8.3:+74596454 None:intergenic
GAATGTCGTACTTCTCCCTT+TGG 0.427201 8.3:+74595604 None:intergenic
TGTTTGCTCCTCAGTATCCA+TGG 0.429758 8.3:-74596758 MS.gene36802:intron
AAACATCATGGAATGGGCAT+TGG 0.430298 8.3:+74596453 None:intergenic
CACGTGCCGATTCAGTTAAC+AGG 0.442811 8.3:-74597102 MS.gene36802:intron
TTTGCTGACAATGACGGTGG+TGG 0.444287 8.3:-74596524 MS.gene36802:CDS
AACCCACCTGTTAACTGAAT+CGG 0.449798 8.3:+74597096 None:intergenic
TGATATTTCCTTGGACCAAA+GGG 0.451414 8.3:-74595619 MS.gene36802:CDS
AAATGTAAGTTGGCACATTC+CGG 0.458463 8.3:+74595551 None:intergenic
ATGGGCATTGGGTAATGTTA+AGG 0.460508 8.3:+74596465 None:intergenic
AAGCTCCTAGATGCTCTGTC+CGG 0.462781 8.3:-74596347 MS.gene36802:CDS
TTTGAGTAGTCCAACAACTA+AGG 0.473906 8.3:-74596309 MS.gene36802:intron
TCAACAAATGACATCTCATC+TGG 0.477145 8.3:+74595687 None:intergenic
ATGTGCCAACTTACATTTGA+CGG 0.477557 8.3:-74595546 MS.gene36802:CDS
CTTTAAATTGAATAAAGGTC+AGG 0.486856 8.3:+74595724 None:intergenic
CTGATATTTCCTTGGACCAA+AGG 0.487521 8.3:-74595620 MS.gene36802:CDS
TGTTTAAAACATCATGGAAT+GGG 0.490438 8.3:+74596447 None:intergenic
TCTGCGTGTTTAAAACATCA+TGG 0.491336 8.3:+74596441 None:intergenic
ACATCCCACCTACCTTGAAA+AGG 0.492710 8.3:-74596556 MS.gene36802:CDS
TTGTCCCGGACAGAGCATCT+AGG 0.503175 8.3:+74596342 None:intergenic
AAGATTCTGTTAATTGACAT+TGG 0.510535 8.3:-74596683 MS.gene36802:CDS
GTACTTCTCCCTTTGGTCCA+AGG 0.515790 8.3:+74595611 None:intergenic
AGCTCCTAGATGCTCTGTCC+GGG 0.517194 8.3:-74596346 MS.gene36802:CDS
TCAAATGTGTCAAGGGCCTC+CGG 0.519520 8.3:-74595570 MS.gene36802:CDS
CCCACCTACCTTGAAAAGGC+TGG 0.525727 8.3:-74596552 MS.gene36802:CDS
GTGTTTAAAACATCATGGAA+TGG 0.533456 8.3:+74596446 None:intergenic
CATCTCCGTCAAATGTAAGT+TGG 0.543273 8.3:+74595541 None:intergenic
TTGCTGACAATGACGGTGGT+GGG 0.547491 8.3:-74596523 MS.gene36802:CDS
AAAGATTATCAAATGTGTCA+AGG 0.550375 8.3:-74595578 MS.gene36802:CDS
AAGATTATCAAATGTGTCAA+GGG 0.551821 8.3:-74595577 MS.gene36802:CDS
GTTTGCTCCTCAGTATCCAT+GGG 0.552028 8.3:-74596757 MS.gene36802:intron
GACAATGAAACCAAACGACA+TGG 0.562304 8.3:+74596379 None:intergenic
GGCGCGTTAATTTCAAGTGA+AGG 0.565512 8.3:+74596500 None:intergenic
TTTAGAGCTCATGCTGACCT+GGG 0.566033 8.3:-74596066 MS.gene36802:CDS
GCATCTAGGAGCTTGAGTAA+TGG 0.570363 8.3:+74596356 None:intergenic
TCTCAAAATTCAGATCTACA+AGG 0.571443 8.3:-74595991 MS.gene36802:intron
ATGAGACAATTAGGAACACT+TGG 0.572179 8.3:+74595753 None:intergenic
AGGGTGAGAGATCACACCTC+AGG 0.579791 8.3:+74595513 None:intergenic
GCACAGATGAGATGCATCAT+CGG 0.581171 8.3:+74597148 None:intergenic
GTGGACAAACAGTGGCTGCT+TGG 0.586558 8.3:-74596134 MS.gene36802:intron
GACTTCTTTGCTGACAATGA+CGG 0.589494 8.3:-74596530 MS.gene36802:CDS
CAAACGACATGGGATAGAGA+TGG 0.595053 8.3:+74596390 None:intergenic
CAATTAGGAACACTTGGCTG+TGG 0.595075 8.3:+74595759 None:intergenic
GGAGCCCATCCTAAAATTGG+TGG 0.598007 8.3:+74595780 None:intergenic
ATTAACAGAATCTTCAATGA+CGG 0.599299 8.3:+74596692 None:intergenic
TCTATCAATGCACTCCTCTG+TGG 0.614921 8.3:-74596644 MS.gene36802:CDS
GGTTTACACGAATTGTCCCA+TGG 0.615081 8.3:+74596741 None:intergenic
CTATGTTTGGGCAGCCACAG+AGG 0.627817 8.3:+74596630 None:intergenic
TTCTTTGCTGACAATGACGG+TGG 0.629876 8.3:-74596527 MS.gene36802:CDS
ATGTTAAGGTACTCAAGATG+AGG 0.643237 8.3:+74596479 None:intergenic
ACAATGAAACCAAACGACAT+GGG 0.644148 8.3:+74596380 None:intergenic
ACGTGAGTTGTCATCGACAA+CGG 0.652346 8.3:+74597120 None:intergenic
TAGTGAATTGGAGTTAACCC+AGG 0.656521 8.3:+74596049 None:intergenic
TGTAAGTTGGCACATTCCGG+AGG 0.666892 8.3:+74595554 None:intergenic
CACGCAGAACTTGCACAATG+TGG 0.672729 8.3:-74596426 MS.gene36802:CDS
TGACGGAGATGTATCTCCTG+AGG 0.677821 8.3:-74595529 MS.gene36802:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATGATTTATTTATTTA+TGG - chr8.3:74596476-74596495 MS.gene36802:CDS 10.0%
!! AAAACCTTTAAATTGAATAA+AGG + chr8.3:74596953-74596972 None:intergenic 15.0%
!! TTAATCATGTATATATTAAG+TGG + chr8.3:74596813-74596832 None:intergenic 15.0%
!!! GTTTAATTTGAAGTTTAATT+CGG - chr8.3:74596704-74596723 MS.gene36802:CDS 15.0%
!!! ATTCAATTTAAAGGTTTTCA+AGG - chr8.3:74596955-74596974 MS.gene36802:intron 20.0%
! AAAGATTATCAAATGTGTCA+AGG - chr8.3:74597091-74597110 MS.gene36802:intron 25.0%
! AAGATTATCAAATGTGTCAA+GGG - chr8.3:74597092-74597111 MS.gene36802:intron 25.0%
! AAGATTCTGTTAATTGACAT+TGG - chr8.3:74595986-74596005 MS.gene36802:intron 25.0%
! AGATTTCAAGCAAATCATAT+TGG + chr8.3:74595808-74595827 None:intergenic 25.0%
! ATTAACAGAATCTTCAATGA+CGG + chr8.3:74595980-74595999 None:intergenic 25.0%
! ATTCTTGAAAAAGCAATTCA+CGG + chr8.3:74596567-74596586 None:intergenic 25.0%
! CTGACCTTTATTCAATTTAA+AGG - chr8.3:74596946-74596965 MS.gene36802:intron 25.0%
! CTTTAAATTGAATAAAGGTC+AGG + chr8.3:74596948-74596967 None:intergenic 25.0%
! TTATGACCATGAAAAAAGAA+TGG - chr8.3:74596081-74596100 MS.gene36802:CDS 25.0%
! TTGCTTTCAATCTTAAGTAT+TGG - chr8.3:74595846-74595865 MS.gene36802:intron 25.0%
! TTGGTTAAATTCAATTTCCT+AGG + chr8.3:74595789-74595808 None:intergenic 25.0%
!! TGTTTAAAACATCATGGAAT+GGG + chr8.3:74596225-74596244 None:intergenic 25.0%
!!! GATTATTTCTGATATTTCCT+TGG - chr8.3:74597041-74597060 MS.gene36802:intron 25.0%
!!! GTTTTGTTCTAATTACTACT+TGG - chr8.3:74596508-74596527 MS.gene36802:CDS 25.0%
!!! TTTTGTCCATTCTTTTTTCA+TGG + chr8.3:74596090-74596109 None:intergenic 25.0%
AGCATCAGAATTTCTATGTT+TGG + chr8.3:74596055-74596074 None:intergenic 30.0%
CAAAACTTAACCTTAGTTGT+TGG + chr8.3:74596373-74596392 None:intergenic 30.0%
GCATCAGAATTTCTATGTTT+GGG + chr8.3:74596054-74596073 None:intergenic 30.0%
GTTGTTCTTTATTGTTTCCT+AGG - chr8.3:74595769-74595788 MS.gene36802:CDS 30.0%
TCTCAAAATTCAGATCTACA+AGG - chr8.3:74596678-74596697 MS.gene36802:CDS 30.0%
TTCTTGAAAAAGCAATTCAC+GGG + chr8.3:74596566-74596585 None:intergenic 30.0%
! GTGTTTAAAACATCATGGAA+TGG + chr8.3:74596226-74596245 None:intergenic 30.0%
! TAATTGTTGTAGAGCTTTGT+AGG + chr8.3:74595952-74595971 None:intergenic 30.0%
!! CATGTATTTTTATTGCCTAC+AGG - chr8.3:74596861-74596880 MS.gene36802:intron 30.0%
!! CTAATTACTACTTGGTAATG+TGG - chr8.3:74596516-74596535 MS.gene36802:CDS 30.0%
AAGCAAGCAAAGTAGTGAAT+TGG + chr8.3:74596635-74596654 None:intergenic 35.0%
ACAATGAAACCAAACGACAT+GGG + chr8.3:74596292-74596311 None:intergenic 35.0%
ATGAGACAATTAGGAACACT+TGG + chr8.3:74596919-74596938 None:intergenic 35.0%
ATGTGCCAACTTACATTTGA+CGG - chr8.3:74597123-74597142 MS.gene36802:CDS 35.0%
CTTAACCAGCTCTTATGAAA+TGG - chr8.3:74596748-74596767 MS.gene36802:intron 35.0%
GTAATCCATTTCATAAGAGC+TGG + chr8.3:74596756-74596775 None:intergenic 35.0%
TCAACAAATGACATCTCATC+TGG + chr8.3:74596985-74597004 None:intergenic 35.0%
TCTTGAAAAAGCAATTCACG+GGG + chr8.3:74596565-74596584 None:intergenic 35.0%
TGATATTTCCTTGGACCAAA+GGG - chr8.3:74597050-74597069 MS.gene36802:intron 35.0%
TTTGAGTAGTCCAACAACTA+AGG - chr8.3:74596360-74596379 MS.gene36802:CDS 35.0%
! AAATGTAAGTTGGCACATTC+CGG + chr8.3:74597121-74597140 None:intergenic 35.0%
! ATGTTAAGGTACTCAAGATG+AGG + chr8.3:74596193-74596212 None:intergenic 35.0%
! CAAAGTTAGATGTTTTGTCC+CGG + chr8.3:74596344-74596363 None:intergenic 35.0%
! GTTGAGCATGTTTTGCAAAA+AGG - chr8.3:74597000-74597019 MS.gene36802:intron 35.0%
! TCTGCGTGTTTAAAACATCA+TGG + chr8.3:74596231-74596250 None:intergenic 35.0%
!! ATTTTGAGAACTTGAAGCAC+AGG + chr8.3:74596667-74596686 None:intergenic 35.0%
!! TCTTAAGTATTGGTGCTATG+TGG - chr8.3:74595856-74595875 MS.gene36802:intron 35.0%
AAACATCATGGAATGGGCAT+TGG + chr8.3:74596219-74596238 None:intergenic 40.0%
AACATCATGGAATGGGCATT+GGG + chr8.3:74596218-74596237 None:intergenic 40.0%
AACCCACCTGTTAACTGAAT+CGG + chr8.3:74595576-74595595 None:intergenic 40.0%
AGGTGCGATATGAGACAATT+AGG + chr8.3:74596928-74596947 None:intergenic 40.0%
CATCTAGGAGCTTGAGTAAT+GGG + chr8.3:74596315-74596334 None:intergenic 40.0%
CATCTCCGTCAAATGTAAGT+TGG + chr8.3:74597131-74597150 None:intergenic 40.0%
CTGATATTTCCTTGGACCAA+AGG - chr8.3:74597049-74597068 MS.gene36802:intron 40.0%
GACAATGAAACCAAACGACA+TGG + chr8.3:74596293-74596312 None:intergenic 40.0%
GACTTCTTTGCTGACAATGA+CGG - chr8.3:74596139-74596158 MS.gene36802:intron 40.0%
TAGTGAATTGGAGTTAACCC+AGG + chr8.3:74596623-74596642 None:intergenic 40.0%
! AAAGAAGTCCAGCCTTTTCA+AGG + chr8.3:74596128-74596147 None:intergenic 40.0%
!! ATGGGCATTGGGTAATGTTA+AGG + chr8.3:74596207-74596226 None:intergenic 40.0%
!! TTGGTAATGTGGACAAACAG+TGG - chr8.3:74596527-74596546 MS.gene36802:CDS 40.0%
AAGGTGAAGTTCCTCGAGAT+GGG + chr8.3:74595615-74595634 None:intergenic 45.0%
AAGTGAAGAGGTTTAGAGGG+AGG + chr8.3:74595682-74595701 None:intergenic 45.0%
ACATCCCACCTACCTTGAAA+AGG - chr8.3:74596113-74596132 MS.gene36802:CDS 45.0%
ACGTGAGTTGTCATCGACAA+CGG + chr8.3:74595552-74595571 None:intergenic 45.0%
CAAACGACATGGGATAGAGA+TGG + chr8.3:74596282-74596301 None:intergenic 45.0%
CAATTAGGAACACTTGGCTG+TGG + chr8.3:74596913-74596932 None:intergenic 45.0%
CATCTCTATCCCATGTCGTT+TGG - chr8.3:74596280-74596299 MS.gene36802:intron 45.0%
CGTTGTCGATGTTGTCTGAA+CGG + chr8.3:74595643-74595662 None:intergenic 45.0%
GAATGTCGTACTTCTCCCTT+TGG + chr8.3:74597068-74597087 None:intergenic 45.0%
GAATTGTCCCATGGATACTG+AGG + chr8.3:74595922-74595941 None:intergenic 45.0%
GCATCTAGGAGCTTGAGTAA+TGG + chr8.3:74596316-74596335 None:intergenic 45.0%
GCCTGAGTAAAACGAGGTTA+GGG + chr8.3:74595706-74595725 None:intergenic 45.0%
GGCAAGTGAAGAGGTTTAGA+GGG + chr8.3:74595685-74595704 None:intergenic 45.0%
GGTTTACACGAATTGTCCCA+TGG + chr8.3:74595931-74595950 None:intergenic 45.0%
GTTTGCTCCTCAGTATCCAT+GGG - chr8.3:74595912-74595931 MS.gene36802:intron 45.0%
TCTATCAATGCACTCCTCTG+TGG - chr8.3:74596025-74596044 MS.gene36802:CDS 45.0%
TGCCTGAGTAAAACGAGGTT+AGG + chr8.3:74595707-74595726 None:intergenic 45.0%
TGTGGAGCCCATCCTAAAAT+TGG + chr8.3:74596895-74596914 None:intergenic 45.0%
TGTTGTCTGAACGGAGATCA+AGG + chr8.3:74595634-74595653 None:intergenic 45.0%
TGTTTGCTCCTCAGTATCCA+TGG - chr8.3:74595911-74595930 MS.gene36802:intron 45.0%
TTCTTTGCTGACAATGACGG+TGG - chr8.3:74596142-74596161 MS.gene36802:intron 45.0%
! ATTTAGAGCTCATGCTGACC+TGG - chr8.3:74596602-74596621 MS.gene36802:CDS 45.0%
! GGCGCGTTAATTTCAAGTGA+AGG + chr8.3:74596172-74596191 None:intergenic 45.0%
! TTTAGAGCTCATGCTGACCT+GGG - chr8.3:74596603-74596622 MS.gene36802:CDS 45.0%
!! AAGTCCAGCCTTTTCAAGGT+AGG + chr8.3:74596124-74596143 None:intergenic 45.0%
!! AGCAGCCACCAATTTTAGGA+TGG - chr8.3:74596884-74596903 MS.gene36802:intron 45.0%
!! TGCCGATTCAGTTAACAGGT+GGG - chr8.3:74595571-74595590 MS.gene36802:CDS 45.0%
!!! GCAGCCACCAATTTTAGGAT+GGG - chr8.3:74596885-74596904 MS.gene36802:intron 45.0%
AAGCGTGCCTGAGTAAAACG+AGG + chr8.3:74595712-74595731 None:intergenic 50.0%
AAGCTCCTAGATGCTCTGTC+CGG - chr8.3:74596322-74596341 MS.gene36802:CDS 50.0%
AGGTGAAGTTCCTCGAGATG+GGG + chr8.3:74595614-74595633 None:intergenic 50.0%
CAAGGTGAAGTTCCTCGAGA+TGG + chr8.3:74595616-74595635 None:intergenic 50.0%
CACGCAGAACTTGCACAATG+TGG - chr8.3:74596243-74596262 MS.gene36802:intron 50.0%
GAGGTTTAGAGGGAGGTTGA+AGG + chr8.3:74595675-74595694 None:intergenic 50.0%
GGAGCCCATCCTAAAATTGG+TGG + chr8.3:74596892-74596911 None:intergenic 50.0%
GGGCAAGTGAAGAGGTTTAG+AGG + chr8.3:74595686-74595705 None:intergenic 50.0%
GTACTTCTCCCTTTGGTCCA+AGG + chr8.3:74597061-74597080 None:intergenic 50.0%
TCAAATGTGTCAAGGGCCTC+CGG - chr8.3:74597099-74597118 MS.gene36802:intron 50.0%
TGACGGAGATGTATCTCCTG+AGG - chr8.3:74597140-74597159 MS.gene36802:CDS 50.0%
TTGCTGACAATGACGGTGGT+GGG - chr8.3:74596146-74596165 MS.gene36802:intron 50.0%
TTTGCTGACAATGACGGTGG+TGG - chr8.3:74596145-74596164 MS.gene36802:intron 50.0%
! AAATTGGTGGCTGCTCCTGT+AGG + chr8.3:74596879-74596898 None:intergenic 50.0%
! CAGGAGCAGCCACCAATTTT+AGG - chr8.3:74596880-74596899 MS.gene36802:intron 50.0%
! GCCCTAACCTCGTTTTACTC+AGG - chr8.3:74595702-74595721 MS.gene36802:CDS 50.0%
! TGTAAGTTGGCACATTCCGG+AGG + chr8.3:74597118-74597137 None:intergenic 50.0%
!! CACGTGCCGATTCAGTTAAC+AGG - chr8.3:74595567-74595586 MS.gene36802:CDS 50.0%
!! CCAGCCTTTTCAAGGTAGGT+GGG + chr8.3:74596120-74596139 None:intergenic 50.0%
!! GTGCCGATTCAGTTAACAGG+TGG - chr8.3:74595570-74595589 MS.gene36802:CDS 50.0%
!! TCCAGCCTTTTCAAGGTAGG+TGG + chr8.3:74596121-74596140 None:intergenic 50.0%
AGCTCCTAGATGCTCTGTCC+GGG - chr8.3:74596323-74596342 MS.gene36802:CDS 55.0%
CCCACCTACCTTGAAAAGGC+TGG - chr8.3:74596117-74596136 MS.gene36802:CDS 55.0%
CGAGGTTAGGGCAAGTGAAG+AGG + chr8.3:74595694-74595713 None:intergenic 55.0%
CTATGTTTGGGCAGCCACAG+AGG + chr8.3:74596042-74596061 None:intergenic 55.0%
GTGGACAAACAGTGGCTGCT+TGG - chr8.3:74596535-74596554 MS.gene36802:CDS 55.0%
! TTGTCCCGGACAGAGCATCT+AGG + chr8.3:74596330-74596349 None:intergenic 55.0%
CTCGAGATGGGGCCCAATGA+CGG + chr8.3:74595603-74595622 None:intergenic 60.0%
! AGGTGGGTTCGTGCCGTCAT+TGG - chr8.3:74595587-74595606 MS.gene36802:CDS 60.0%
! GGTGGGTTCGTGCCGTCATT+GGG - chr8.3:74595588-74595607 MS.gene36802:CDS 60.0%
CGTCATTGGGCCCCATCTCG+AGG - chr8.3:74595601-74595620 MS.gene36802:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 74595524 74597167 74595524 ID=MS.gene36802
chr8.3 mRNA 74595524 74597167 74595524 ID=MS.gene36802.t1;Parent=MS.gene36802
chr8.3 exon 74597103 74597167 74597103 ID=MS.gene36802.t1.exon1;Parent=MS.gene36802.t1
chr8.3 CDS 74597103 74597167 74597103 ID=cds.MS.gene36802.t1;Parent=MS.gene36802.t1
chr8.3 exon 74596310 74596766 74596310 ID=MS.gene36802.t1.exon2;Parent=MS.gene36802.t1
chr8.3 CDS 74596310 74596766 74596310 ID=cds.MS.gene36802.t1;Parent=MS.gene36802.t1
chr8.3 exon 74595992 74596144 74595992 ID=MS.gene36802.t1.exon3;Parent=MS.gene36802.t1
chr8.3 CDS 74595992 74596144 74595992 ID=cds.MS.gene36802.t1;Parent=MS.gene36802.t1
chr8.3 exon 74595524 74595808 74595524 ID=MS.gene36802.t1.exon4;Parent=MS.gene36802.t1
chr8.3 CDS 74595524 74595808 74595524 ID=cds.MS.gene36802.t1;Parent=MS.gene36802.t1
Gene Sequence

>MS.gene36802

ATGATGCATCTCATCTGTGCTCACTCCGTTGTCGATGACAACTCACGTGCCGATTCAGTTAACAGGTGGGTTCGTGCCGTCATTGGGCCCCATCTCGAGGAACTTCACCTTGATCTCCGTTCAGACAACATCGACAACGTCAGACTTTCCTTCAACCTCCCTCTAAACCTCTTCACTTGCCCTAACCTCGTTTTACTCAGGCACGCTTCTATTGTTTATTATTATTTTGTGTTGTGTTGTGTTGTGTTGTTCTTTATTGTTTCCTAGGAAATTGAATTTAACCAATATGATTTGCTTGAAATCTAACGTGTATGAATCTGATTTGCTTTCAATCTTAAGTATTGGTGCTATGTGGTTATGAAATGTGAAATAACTTATAACATTATTTGTTTGCTCCTCAGTATCCATGGGACAATTCGTGTAAACCTACAAAGCTCTACAACAATTAGTTTACCGTCATTGAAGATTCTGTTAATTGACATTGGTTTTATTGACATTCATTCTATCAATGCACTCCTCTGTGGCTGCCCAAACATAGAAATTCTGATGCTTAGCTTTTATGACCATGAAAAAAGAATGGACAAAATTTACATCCCACCTACCTTGAAAAGGCTGGACTTCTTTGCTGACAATGACGGTGGTGGGCCTTCACTTGAAATTAACGCGCCTCATCTTGAGTACCTTAACATTACCCAATGCCCATTCCATGATGTTTTAAACACGCAGAACTTGCACAATGTGGTAGAAGCAAGTCTCCATCTCTATCCCATGTCGTTTGGTTTCATTGTCCCATTACTCAAGCTCCTAGATGCTCTGTCCGGGACAAAACATCTAACTTTGAGTAGTCCAACAACTAAGGTTAAGTTTTGTTTTAGTTTTTTAATGTTTACTCATCGTTTATATAGAGAGTAAGTTAGTAACTAGCTAACTAATGACAAATTATATAACTAATAATCATGATTTATTTATTTATGGATAGATATAGTTTTGTTCTAATTACTACTTGGTAATGTGGACAAACAGTGGCTGCTTGGTGAACCCCGTGAATTGCTTTTTCAAGAATTTCGCTATTTGCTTCATTTAGAGCTCATGCTGACCTGGGTTAACTCCAATTCACTACTTTGCTTGCTTCAAAAATGTCCTGTGCTTCAAGTTCTCAAAATTCAGATCTACAAGGTTTGTTTAATTTGAAGTTTAATTCGGTCTGTATAACTTTAATGAGAACTTAACCAGCTCTTATGAAATGGATTACACAAATTAGTAGTTGCATTTTATTGTACAGTACACCACTTAATATATACATGATTAATTCATTACTACTAATATTGCATCTTATTCATGTATTTTTATTGCCTACAGGAGCAGCCACCAATTTTAGGATGGGCTCCACAGCCAAGTGTTCCTAATTGTCTCATATCGCACCTGACCTTTATTCAATTTAAAGGTTTTCAAGGATTTCCAGATGAGATGTCATTTGTTGAGCATGTTTTGCAAAAAGGACTTGTTTTGAAAACATTGATTATTTCTGATATTTCCTTGGACCAAAGGGAGAAGTACGACATTCTCAAAAGATTATCAAATGTGTCAAGGGCCTCCGGAATGTGCCAACTTACATTTGACGGAGATGTATCTCCTGAGGTGTGA
Protein sequence

>MS.gene36802.t1

MMHLICAHSVVDDNSRADSVNSIHGTIRVNLQSSTTISLPSLKILLIDIGFIDIHSINALLCGCPNIEILMLSFYDHEKRMDKIYIPPTLKRLDFFADNDGGGPSLEINAPHLEYLNITQCPFHDVLNTQNLHNVVEASLHLYPMSFGFIVPLLKLLDALSGTKHLTLSSPTTKWLLGEPRELLFQEFRYLLHLELMLTWVNSNSLLCLLQKCPVLQVLKIQIYKEQPPILGWAPQPSVPNCLISHLTFIQFKGFQGFPDEMSFVEHVLQKGLVLKTLIISDISLDQREKYDILKRLSNVSRASGMCQLTFDGDVSPEV