AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36938

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36938.t1 MTR_8g014260 47.945 365 148 13 1 332 96 451 1.64e-85 265
MS.gene36938.t1 MTR_4g024710 49.338 302 128 8 45 332 57 347 7.94e-77 239
MS.gene36938.t1 MTR_8g014160 43.611 360 115 10 1 332 126 425 1.58e-72 231
MS.gene36938.t1 MTR_8g445780 46.801 297 121 9 18 287 104 390 4.81e-67 216
MS.gene36938.t1 MTR_4g024745 50.951 263 108 6 66 315 29 283 1.24e-66 211
MS.gene36938.t1 MTR_8g014210 54.545 231 88 6 114 332 6 231 4.96e-63 200
MS.gene36938.t1 MTR_2g083840 43.597 367 161 14 1 332 102 457 3.05e-62 205
MS.gene36938.t1 MTR_8g467800 39.943 348 158 12 14 323 109 443 1.79e-57 192
MS.gene36938.t1 MTR_8g468810 41.370 365 160 15 1 326 107 456 2.37e-56 189
MS.gene36938.t1 MTR_8g058970 41.509 371 156 13 1 320 101 461 7.78e-55 186
MS.gene36938.t1 MTR_8g062270 42.075 347 146 15 18 326 118 447 1.35e-54 185
MS.gene36938.t1 MTR_8g469020 38.462 377 174 15 2 332 87 451 1.25e-53 182
MS.gene36938.t1 MTR_8g062310 37.647 340 173 13 13 332 108 428 2.81e-53 181
MS.gene36938.t1 MTR_8g468840 43.195 338 143 13 2 303 98 422 1.97e-52 179
MS.gene36938.t1 MTR_5g092960 42.693 349 142 16 18 323 119 452 2.07e-52 179
MS.gene36938.t1 MTR_8g070950 38.793 348 156 15 20 332 109 434 1.55e-51 176
MS.gene36938.t1 MTR_8g062080 36.311 347 171 12 10 328 115 439 1.77e-49 171
MS.gene36938.t1 MTR_4g032730 39.888 356 144 15 2 304 101 439 3.31e-49 171
MS.gene36938.t1 MTR_8g058965 39.722 360 161 14 17 332 109 456 4.12e-49 171
MS.gene36938.t1 MTR_8g077460 35.821 335 157 9 3 332 94 375 4.33e-49 168
MS.gene36938.t1 MTR_8g062010 39.181 342 171 14 14 332 103 430 8.07e-47 164
MS.gene36938.t1 MTR_8g014230 77.174 92 21 0 241 332 13 104 1.50e-44 148
MS.gene36938.t1 MTR_4g050250 37.072 321 130 12 13 279 117 419 1.31e-38 142
MS.gene36938.t1 MTR_4g113810 49.143 175 57 6 1 150 1 168 1.50e-38 135
MS.gene36938.t1 MTR_8g468810 40.714 280 117 13 1 246 107 371 4.53e-36 134
MS.gene36938.t1 MTR_8g468760 36.389 360 145 15 2 323 96 409 8.45e-35 131
MS.gene36938.t1 MTR_8g062300 33.243 370 180 15 16 332 122 477 9.43e-34 129
MS.gene36938.t1 MTR_5g092960 42.481 266 103 13 18 246 119 371 6.05e-32 123
MS.gene36938.t1 MTR_2g086020 33.861 316 130 12 12 323 65 305 5.81e-26 105
MS.gene36938.t1 MTR_8g467790 30.667 300 147 11 2 279 234 494 4.93e-25 105
MS.gene36938.t1 MTR_8g467800 38.389 211 91 8 14 195 109 309 5.35e-24 100
MS.gene36938.t1 MTR_8g468810 37.668 223 97 10 1 195 107 315 2.68e-23 98.6
MS.gene36938.t1 MTR_8g468810 37.668 223 97 10 1 195 107 315 2.87e-23 98.6
MS.gene36938.t1 MTR_8g468810 37.668 223 97 10 1 195 107 315 3.79e-23 98.6
MS.gene36938.t1 MTR_8g014220 48.182 110 27 4 3 91 60 160 1.37e-18 82.0
MS.gene36938.t1 MTR_5g084070 32.203 236 143 9 75 301 167 394 9.46e-17 80.9
MS.gene36938.t1 MTR_7g056433 27.152 302 164 11 47 332 128 389 6.34e-15 75.5
MS.gene36938.t1 MTR_7g098510 28.223 287 138 11 60 332 159 391 8.07e-15 75.1
MS.gene36938.t1 MTR_7g098570 27.660 282 133 10 60 326 161 386 6.34e-14 72.8
MS.gene36938.t1 MTR_1g041245 32.258 186 100 4 167 326 194 379 2.60e-13 70.5
MS.gene36938.t1 MTR_3g115430 39.091 110 63 3 225 332 18 125 1.23e-12 64.3
MS.gene36938.t1 MTR_5g080710 32.159 227 137 10 84 301 202 420 4.70e-12 67.0
MS.gene36938.t1 MTR_3g108150 35.606 132 76 4 209 331 255 386 6.41e-12 66.2
MS.gene36938.t1 MTR_5g012840 39.370 127 73 2 210 332 192 318 6.79e-12 65.9
MS.gene36938.t1 MTR_7g034115 28.438 320 157 14 19 318 101 368 8.57e-12 65.9
MS.gene36938.t1 MTR_7g032370 29.237 236 140 6 118 332 123 352 8.58e-12 65.9
MS.gene36938.t1 MTR_7g098480 26.710 307 137 12 50 326 134 382 3.59e-11 64.3
MS.gene36938.t1 MTR_7g032380 33.835 133 79 3 209 332 224 356 4.28e-11 63.5
MS.gene36938.t1 MTR_6g040270 35.000 120 68 4 206 321 249 362 7.40e-11 63.2
MS.gene36938.t1 MTR_1377s0010 35.398 113 60 3 207 314 31 135 7.97e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36938.t1 AT1G32375 27.401 354 195 17 19 332 91 422 1.35e-16 80.5
MS.gene36938.t1 AT1G32375 27.401 354 195 17 19 332 91 422 1.35e-16 80.5
MS.gene36938.t1 AT4G26340 27.875 287 171 10 66 332 149 419 7.93e-16 78.2
MS.gene36938.t1 AT3G50710 29.630 270 143 12 62 305 149 397 4.27e-12 67.0

Find 66 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACGTCACCGAATCTGATT+TGG 0.267198 8.4:+76836519 None:intergenic
ATTCTACCATTTACTTCATT+TGG 0.271140 8.4:-76836000 MS.gene36938:CDS
TGAAGTAAATGGTAGAATTC+TGG 0.292814 8.4:+76836005 None:intergenic
AAGCTCCTCAATGCTCTCTC+TGG 0.335392 8.4:-76836413 MS.gene36938:CDS
ATTAAGAATGTTGAACTTGT+TGG 0.347215 8.4:+76835479 None:intergenic
TATCAAGAGTTTCTAGAATA+GGG 0.352373 8.4:+76836672 None:intergenic
TGAGTTCCAAATGAAGTAAA+TGG 0.358963 8.4:+76835994 None:intergenic
CTTTAAACTGAATAAAAGTT+AGG 0.359295 8.4:+76835604 None:intergenic
CAACCAGAGAGGAGGGTGAT+AGG 0.380691 8.4:+76836921 None:intergenic
ACATGGATCCGCACTGTCAC+TGG 0.381583 8.4:-76837014 MS.gene36938:CDS
GAATGTTGAACTTGTTGGTT+AGG 0.386216 8.4:+76835484 None:intergenic
GCTGAGTATATCCTGCAAAA+AGG 0.391662 8.4:-76835549 MS.gene36938:CDS
AGGTGTGATACGATACAATT+AGG 0.394431 8.4:+76835624 None:intergenic
TCAGCAAATAATAGCTCATC+TGG 0.395698 8.4:+76835567 None:intergenic
GTATCAAGAGTTTCTAGAAT+AGG 0.423250 8.4:+76836671 None:intergenic
ATTCAGTTTAAAGGATATCA+AGG 0.428602 8.4:-76835594 MS.gene36938:CDS
AGTTCCATCCCTTCTCACTT+TGG 0.428990 8.4:+76835449 None:intergenic
CTGCCTATCACCCTCCTCTC+TGG 0.429279 8.4:-76836924 MS.gene36938:CDS
AACGTCACCGAATCTGATTT+GGG 0.463568 8.4:+76836520 None:intergenic
AAATGGTAGAATTCTGGAAA+AGG 0.476720 8.4:+76836011 None:intergenic
TCTGGAAAAGGTAGATCAGC+AGG 0.480321 8.4:+76836023 None:intergenic
GGGATAAAACATCTAGTGTT+GGG 0.482880 8.4:-76836392 MS.gene36938:CDS
CACCGAATCTGATTTGGGTC+AGG 0.490189 8.4:+76836525 None:intergenic
AAGATCGCCAACAAGAAAAT+CGG 0.493596 8.4:+76836625 None:intergenic
CAGAGAGGAGGGTGATAGGC+AGG 0.495258 8.4:+76836925 None:intergenic
TGGGATAAAACATCTAGTGT+TGG 0.502631 8.4:-76836393 MS.gene36938:CDS
CATGGATCCGCACTGTCACT+GGG 0.505010 8.4:-76837013 MS.gene36938:CDS
AGCTCCTCAATGCTCTCTCT+GGG 0.522933 8.4:-76836412 MS.gene36938:CDS
TCGAGGAATTCGTTCATTTG+AGG 0.523451 8.4:+76836701 None:intergenic
AGCCTGACCCAAATCAGATT+CGG 0.524535 8.4:-76836527 MS.gene36938:CDS
GGAGGTCGAGTTCCTTGAGG+TGG 0.539371 8.4:+76836988 None:intergenic
ATTTGGAACTCATTCTTCCG+TGG 0.540093 8.4:-76835983 MS.gene36938:CDS
TTGTCCAAAGTGAGAAGGGA+TGG 0.550405 8.4:-76835453 MS.gene36938:CDS
TGTCACTGGGCCCCACCTCA+AGG 0.552924 8.4:-76837000 MS.gene36938:CDS
TAAGTTGTCCAAAGTGAGAA+GGG 0.553575 8.4:-76835457 MS.gene36938:CDS
GAGGTCGAGTTCCTTGAGGT+GGG 0.553889 8.4:+76836989 None:intergenic
ACGATACAATTAGGAACACT+TGG 0.556312 8.4:+76835633 None:intergenic
GATTATTGATGATATTTCAG+TGG 0.558139 8.4:-76835508 MS.gene36938:CDS
ACTTTCAACTTCTTTAGTGA+CGG 0.562277 8.4:+76836740 None:intergenic
GTGTGCCACCTACGTTGAAG+AGG 0.565380 8.4:-76836601 MS.gene36938:CDS
ATAAGTTGTCCAAAGTGAGA+AGG 0.572096 8.4:-76835458 MS.gene36938:CDS
TTCAACCTCTTCAACGTAGG+TGG 0.575803 8.4:+76836596 None:intergenic
GATTAGTGCAACCAGAGAGG+AGG 0.577689 8.4:+76836913 None:intergenic
GCATAGATTCAGTCGACACA+TGG 0.580795 8.4:-76837031 MS.gene36938:CDS
AAAGAATGATATCCTGAGGA+AGG 0.582109 8.4:+76836455 None:intergenic
ATTAGTGCAACCAGAGAGGA+GGG 0.582145 8.4:+76836914 None:intergenic
AAAATCGCATTTAGCAGGAT+GGG 0.585235 8.4:-76835664 MS.gene36938:CDS
CGACGATAATGAAGTTTCTG+TGG 0.594327 8.4:-76836955 MS.gene36938:CDS
TATCGTCGACATCGAGTAGG+AGG 0.600575 8.4:+76836970 None:intergenic
AAAGTGAGAAGGGATGGAAC+TGG 0.606629 8.4:-76835447 MS.gene36938:CDS
CAAATCAGATTCGGTGACGT+TGG 0.610035 8.4:-76836518 MS.gene36938:CDS
CAAATGAACGAATTCCTCGA+TGG 0.610797 8.4:-76836698 MS.gene36938:CDS
GTTGGGTTGTTCAACAACAA+AGG 0.612560 8.4:-76836375 MS.gene36938:intron
CGTTGGCAACTTACAAAATG+TGG 0.627320 8.4:-76836501 MS.gene36938:CDS
AGAAAATTCGAGTTGAACCA+CGG 0.632227 8.4:+76835966 None:intergenic
GAGAAAAGAATGATATCCTG+AGG 0.632970 8.4:+76836451 None:intergenic
TCTCATAATTCAAAATGACA+AGG 0.638347 8.4:-76835907 MS.gene36938:intron
CATTATCGTCGACATCGAGT+AGG 0.641390 8.4:+76836967 None:intergenic
GTAGGAGGTCGAGTTCCTTG+AGG 0.641668 8.4:+76836985 None:intergenic
CGAGATTAGTGCAACCAGAG+AGG 0.650398 8.4:+76836910 None:intergenic
CTAGAATAGGGCAGCCATCG+AGG 0.654045 8.4:+76836684 None:intergenic
TTATCCCAGAGAGAGCATTG+AGG 0.659136 8.4:+76836408 None:intergenic
AGGTCGAGTTCCTTGAGGTG+GGG 0.660276 8.4:+76836990 None:intergenic
CTGGAAAAGGTAGATCAGCA+GGG 0.691970 8.4:+76836024 None:intergenic
GGTGGGGCCCAGTGACAGTG+CGG 0.692826 8.4:+76837006 None:intergenic
AGGCTAAGATAGTATATACG+AGG 0.726988 8.4:+76836545 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAATAAATATATCACTA+TGG + chr8.4:76835716-76835735 None:intergenic 15.0%
!!! TTGATACTTACTTTTTTTAT+GGG - chr8.4:76835847-76835866 MS.gene36938:intron 15.0%
!! ATAAAGAACATTCGAAATTA+TGG - chr8.4:76836384-76836403 MS.gene36938:CDS 20.0%
!! CAATAATATCACTAAAGATT+AGG + chr8.4:76836358-76836377 None:intergenic 20.0%
!! CTAATCTTTAGTGATATTAT+TGG - chr8.4:76836356-76836375 MS.gene36938:intron 20.0%
!! CTTTAAACTGAATAAAAGTT+AGG + chr8.4:76836901-76836920 None:intergenic 20.0%
!!! CTAACTTTTATTCAGTTTAA+AGG - chr8.4:76836899-76836918 MS.gene36938:intron 20.0%
!!! CTTGATACTTACTTTTTTTA+TGG - chr8.4:76835846-76835865 MS.gene36938:intron 20.0%
!!! GAGTTTTAATGTTTGTTTAA+TGG - chr8.4:76836624-76836643 MS.gene36938:CDS 20.0%
!!! TTGAAAATCAATTTTGATAC+TGG - chr8.4:76835924-76835943 MS.gene36938:CDS 20.0%
! AATATCACTAAAGATTAGGT+TGG + chr8.4:76836354-76836373 None:intergenic 25.0%
! AATATGACTAACAATAATCC+TGG - chr8.4:76836276-76836295 MS.gene36938:intron 25.0%
! ATATCACTAAAGATTAGGTT+GGG + chr8.4:76836353-76836372 None:intergenic 25.0%
! ATATGACTAACAATAATCCT+GGG - chr8.4:76836277-76836296 MS.gene36938:intron 25.0%
! ATTAAGAATGTTGAACTTGT+TGG + chr8.4:76837026-76837045 None:intergenic 25.0%
! ATTCAGTTTAAAGGATATCA+AGG - chr8.4:76836908-76836927 MS.gene36938:intron 25.0%
! ATTCTACCATTTACTTCATT+TGG - chr8.4:76836502-76836521 MS.gene36938:CDS 25.0%
! CAATAAATATATCACTATGG+AGG + chr8.4:76835713-76835732 None:intergenic 25.0%
! GGATTATTGTTAGTCATATT+AGG + chr8.4:76836276-76836295 None:intergenic 25.0%
! TCTCATAATTCAAAATGACA+AGG - chr8.4:76836595-76836614 MS.gene36938:CDS 25.0%
! TTAGAAAGTTAATATGTGTG+TGG + chr8.4:76836329-76836348 None:intergenic 25.0%
!! AAAGGTACAGTTTATTATCA+TGG - chr8.4:76836145-76836164 MS.gene36938:intron 25.0%
!! GATTATTGATGATATTTCAG+TGG - chr8.4:76836994-76837013 MS.gene36938:CDS 25.0%
!!! TATCAAGAGTTTCTAGAATA+GGG + chr8.4:76835833-76835852 None:intergenic 25.0%
ACACATATATACACAAGTCT+TGG - chr8.4:76836228-76836247 MS.gene36938:intron 30.0%
ACTTTCAACTTCTTTAGTGA+CGG + chr8.4:76835765-76835784 None:intergenic 30.0%
ATGATCTAACGTTGCATATA+TGG + chr8.4:76836784-76836803 None:intergenic 30.0%
GACATCAGTCATTTACAATT+TGG + chr8.4:76836189-76836208 None:intergenic 30.0%
GTACAGTTTATTATCATGGT+TGG - chr8.4:76836149-76836168 MS.gene36938:intron 30.0%
GTTAGATCATATGTATGTTG+TGG - chr8.4:76836794-76836813 MS.gene36938:intron 30.0%
TGAAGTAAATGGTAGAATTC+TGG + chr8.4:76836500-76836519 None:intergenic 30.0%
TGAGTTCCAAATGAAGTAAA+TGG + chr8.4:76836511-76836530 None:intergenic 30.0%
! AAATGGTAGAATTCTGGAAA+AGG + chr8.4:76836494-76836513 None:intergenic 30.0%
!! GTATCAAGAGTTTCTAGAAT+AGG + chr8.4:76835834-76835853 None:intergenic 30.0%
!! TATTGAATCACAACTTGCTA+AGG - chr8.4:76835728-76835747 MS.gene36938:intron 30.0%
!!! AATTACACCGATTTTCTTGT+TGG - chr8.4:76835870-76835889 MS.gene36938:intron 30.0%
!!! TGTTGTTTTGAAAAAACCAG+TGG - chr8.4:76836444-76836463 MS.gene36938:CDS 30.0%
AAAAATCGCATTTAGCAGGA+TGG - chr8.4:76836837-76836856 MS.gene36938:intron 35.0%
AAAATCGCATTTAGCAGGAT+GGG - chr8.4:76836838-76836857 MS.gene36938:intron 35.0%
AAAGAATGATATCCTGAGGA+AGG + chr8.4:76836050-76836069 None:intergenic 35.0%
AAGATCGCCAACAAGAAAAT+CGG + chr8.4:76835880-76835899 None:intergenic 35.0%
ACGATACAATTAGGAACACT+TGG + chr8.4:76836872-76836891 None:intergenic 35.0%
AGGCTAAGATAGTATATACG+AGG + chr8.4:76835960-76835979 None:intergenic 35.0%
AGGTGTGATACGATACAATT+AGG + chr8.4:76836881-76836900 None:intergenic 35.0%
ATAAGTTGTCCAAAGTGAGA+AGG - chr8.4:76837044-76837063 MS.gene36938:CDS 35.0%
GAGAAAAGAATGATATCCTG+AGG + chr8.4:76836054-76836073 None:intergenic 35.0%
GGGATAAAACATCTAGTGTT+GGG - chr8.4:76836110-76836129 MS.gene36938:intron 35.0%
TAAGTTGTCCAAAGTGAGAA+GGG - chr8.4:76837045-76837064 MS.gene36938:CDS 35.0%
TCAGCAAATAATAGCTCATC+TGG + chr8.4:76836938-76836957 None:intergenic 35.0%
TGGGATAAAACATCTAGTGT+TGG - chr8.4:76836109-76836128 MS.gene36938:intron 35.0%
TTTGAGCATGCATAAAACGA+GGG + chr8.4:76836729-76836748 None:intergenic 35.0%
! ATCTTTTACTCTACTATCCC+AGG + chr8.4:76836297-76836316 None:intergenic 35.0%
! ATTTTCAACCTCTTCAACGT+AGG + chr8.4:76835912-76835931 None:intergenic 35.0%
! TAGTCATATTAGGTATTGCG+TGG + chr8.4:76836266-76836285 None:intergenic 35.0%
! TCAAAACAAGTCCTTTTTGC+AGG + chr8.4:76836967-76836986 None:intergenic 35.0%
! TTTTGAGCATGCATAAAACG+AGG + chr8.4:76836730-76836749 None:intergenic 35.0%
!! AGAAAATTCGAGTTGAACCA+CGG + chr8.4:76836539-76836558 None:intergenic 35.0%
!! GAATGTTGAACTTGTTGGTT+AGG + chr8.4:76837021-76837040 None:intergenic 35.0%
AACGTCACCGAATCTGATTT+GGG + chr8.4:76835985-76836004 None:intergenic 40.0%
AATTGAATGTGCTTGCCTGA+GGG + chr8.4:76835621-76835640 None:intergenic 40.0%
CAAATGAACGAATTCCTCGA+TGG - chr8.4:76835804-76835823 MS.gene36938:intron 40.0%
CAGGAAAAATCGCATTTAGC+AGG - chr8.4:76836833-76836852 MS.gene36938:intron 40.0%
CGACGATAATGAAGTTTCTG+TGG - chr8.4:76835547-76835566 MS.gene36938:CDS 40.0%
CGTTGGCAACTTACAAAATG+TGG - chr8.4:76836001-76836020 MS.gene36938:CDS 40.0%
GCTGAGTATATCCTGCAAAA+AGG - chr8.4:76836953-76836972 MS.gene36938:CDS 40.0%
TCGAGGAATTCGTTCATTTG+AGG + chr8.4:76835804-76835823 None:intergenic 40.0%
! ATTTGGAACTCATTCTTCCG+TGG - chr8.4:76836519-76836538 MS.gene36938:CDS 40.0%
! CTTGATGTTTTTCCTTCCTC+AGG - chr8.4:76836035-76836054 MS.gene36938:CDS 40.0%
! GTTGGGTTGTTCAACAACAA+AGG - chr8.4:76836127-76836146 MS.gene36938:intron 40.0%
!! GTTGTGGTGTCTTTTGTTGT+CGG - chr8.4:76836810-76836829 MS.gene36938:intron 40.0%
AAAAACCAGTGGCTTCTTCG+TGG - chr8.4:76836455-76836474 MS.gene36938:CDS 45.0%
AAAGTGAGAAGGGATGGAAC+TGG - chr8.4:76837055-76837074 MS.gene36938:CDS 45.0%
AGCCTGACCCAAATCAGATT+CGG - chr8.4:76835975-76835994 MS.gene36938:CDS 45.0%
AGTTCCATCCCTTCTCACTT+TGG + chr8.4:76837056-76837075 None:intergenic 45.0%
ATATCACTATGGAGGCTGAG+AGG + chr8.4:76835705-76835724 None:intergenic 45.0%
ATTAGTGCAACCAGAGAGGA+GGG + chr8.4:76835591-76835610 None:intergenic 45.0%
CAACGTCACCGAATCTGATT+TGG + chr8.4:76835986-76836005 None:intergenic 45.0%
CATTATCGTCGACATCGAGT+AGG + chr8.4:76835538-76835557 None:intergenic 45.0%
CTGGAAAAGGTAGATCAGCA+GGG + chr8.4:76836481-76836500 None:intergenic 45.0%
GAATTGAATGTGCTTGCCTG+AGG + chr8.4:76835622-76835641 None:intergenic 45.0%
GCATAGATTCAGTCGACACA+TGG - chr8.4:76835471-76835490 MS.gene36938:CDS 45.0%
TCTGGAAAAGGTAGATCAGC+AGG + chr8.4:76836482-76836501 None:intergenic 45.0%
TTCAACCTCTTCAACGTAGG+TGG + chr8.4:76835909-76835928 None:intergenic 45.0%
TTGTCCAAAGTGAGAAGGGA+TGG - chr8.4:76837049-76837068 MS.gene36938:CDS 45.0%
!! CAAATCAGATTCGGTGACGT+TGG - chr8.4:76835984-76836003 MS.gene36938:CDS 45.0%
!! TTATCCCAGAGAGAGCATTG+AGG + chr8.4:76836097-76836116 None:intergenic 45.0%
AAGCTCCTCAATGCTCTCTC+TGG - chr8.4:76836089-76836108 MS.gene36938:intron 50.0%
AGCTCCTCAATGCTCTCTCT+GGG - chr8.4:76836090-76836109 MS.gene36938:intron 50.0%
CGAGATTAGTGCAACCAGAG+AGG + chr8.4:76835595-76835614 None:intergenic 50.0%
GATTAGTGCAACCAGAGAGG+AGG + chr8.4:76835592-76835611 None:intergenic 50.0%
GCACTAATCTCGTTTCCCTC+AGG - chr8.4:76835603-76835622 MS.gene36938:CDS 50.0%
TATCGTCGACATCGAGTAGG+AGG + chr8.4:76835535-76835554 None:intergenic 50.0%
!! CACCGAATCTGATTTGGGTC+AGG + chr8.4:76835980-76835999 None:intergenic 50.0%
!! TGGTGTCTTTTGTTGTCGGC+AGG - chr8.4:76836814-76836833 MS.gene36938:intron 50.0%
ACATGGATCCGCACTGTCAC+TGG - chr8.4:76835488-76835507 MS.gene36938:CDS 55.0%
AGGTCGAGTTCCTTGAGGTG+GGG + chr8.4:76835515-76835534 None:intergenic 55.0%
CAACCAGAGAGGAGGGTGAT+AGG + chr8.4:76835584-76835603 None:intergenic 55.0%
CATGGATCCGCACTGTCACT+GGG - chr8.4:76835489-76835508 MS.gene36938:CDS 55.0%
CTAGAATAGGGCAGCCATCG+AGG + chr8.4:76835821-76835840 None:intergenic 55.0%
GAGGTCGAGTTCCTTGAGGT+GGG + chr8.4:76835516-76835535 None:intergenic 55.0%
GTAGGAGGTCGAGTTCCTTG+AGG + chr8.4:76835520-76835539 None:intergenic 55.0%
GTGTGCCACCTACGTTGAAG+AGG - chr8.4:76835901-76835920 MS.gene36938:intron 55.0%
CAGAGAGGAGGGTGATAGGC+AGG + chr8.4:76835580-76835599 None:intergenic 60.0%
CTGCCTATCACCCTCCTCTC+TGG - chr8.4:76835578-76835597 MS.gene36938:CDS 60.0%
GGAGGTCGAGTTCCTTGAGG+TGG + chr8.4:76835517-76835536 None:intergenic 60.0%
CAGGGCCACGAAGAAGCCAC+TGG + chr8.4:76836463-76836482 None:intergenic 65.0%
TGTCACTGGGCCCCACCTCA+AGG - chr8.4:76835502-76835521 MS.gene36938:CDS 65.0%
GGTGGGGCCCAGTGACAGTG+CGG + chr8.4:76835499-76835518 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 76835428 76837096 76835428 ID=MS.gene36938
chr8.4 mRNA 76835428 76837096 76835428 ID=MS.gene36938.t1;Parent=MS.gene36938
chr8.4 exon 76836911 76837096 76836911 ID=MS.gene36938.t1.exon1;Parent=MS.gene36938.t1
chr8.4 CDS 76836911 76837096 76836911 ID=cds.MS.gene36938.t1;Parent=MS.gene36938.t1
chr8.4 exon 76836376 76836774 76836376 ID=MS.gene36938.t1.exon2;Parent=MS.gene36938.t1
chr8.4 CDS 76836376 76836774 76836376 ID=cds.MS.gene36938.t1;Parent=MS.gene36938.t1
chr8.4 exon 76835908 76836060 76835908 ID=MS.gene36938.t1.exon3;Parent=MS.gene36938.t1
chr8.4 CDS 76835908 76836060 76835908 ID=cds.MS.gene36938.t1;Parent=MS.gene36938.t1
chr8.4 exon 76835428 76835688 76835428 ID=MS.gene36938.t1.exon4;Parent=MS.gene36938.t1
chr8.4 CDS 76835428 76835688 76835428 ID=cds.MS.gene36938.t1;Parent=MS.gene36938.t1
Gene Sequence

>MS.gene36938

ATGCGTCTGTCGTGTACGAAATTGCTCGTGCAAAACGAATTCTGCATAGATTCAGTCGACACATGGATCCGCACTGTCACTGGGCCCCACCTCAAGGAACTCGACCTCCTACTCGATGTCGACGATAATGAAGTTTCTGTGGAATACGACCTGCCTATCACCCTCCTCTCTGGTTGCACTAATCTCGTTTCCCTCAGGCAAGCACATTCAATTCTTTTTTTATAATAGAATTTGTTTTTTTAATTATTATTAAAATTATTTATATTGCTACACTCCTCTCAGCCTCCATAGTGATATATTTATTGAATCACAACTTGCTAAGGATTTTCATTTACCGTCACTAAAGAAGTTGAAAGTCTGTGCTATGAGCATGCCTCAAATGAACGAATTCCTCGATGGCTGCCCTATTCTAGAAACTCTTGATACTTACTTTTTTTATGGGAATTACACCGATTTTCTTGTTGGCGATCTTCGTGTGCCACCTACGTTGAAGAGGTTGAAAATCAATTTTGATACTGGCAGTGTTGCGCCTCGTATATACTATCTTAGCCTGACCCAAATCAGATTCGGTGACGTTGGCAACTTACAAAATGTGGTGAGAGCGTCTCTTGATGTTTTTCCTTCCTCAGGATATCATTCTTTTCTCTTCACTTGTTTACTCAAGCTCCTCAATGCTCTCTCTGGGATAAAACATCTAGTGTTGGGTTGTTCAACAACAAAGGTACAGTTTATTATCATGGTTGGATATAGATATAATACCAAATTGTAAATGACTGATGTCTTTCACTGATAAAATGCGTACACATATATACACAAGTCTTGGAATACAATCAATCCACGCAATACCTAATATGACTAACAATAATCCTGGGATAGTAGAGTAAAAGATATGTACATACCACACACATATTAACTTTCTAATCCCAACCTAATCTTTAGTGATATTATTGGATATCATAAAGAACATTCGAAATTATGGTATAGTGTCGTACTAGCTAATAATACGTCTTACTACTTGTTGTTTTGAAAAAACCAGTGGCTTCTTCGTGGCCCTGCTGATCTACCTTTTCCAGAATTCTACCATTTACTTCATTTGGAACTCATTCTTCCGTGGTTCAACTCGAATTTTCTGCTGAGTTTGCTTCAGACATGTCATCATCTTCAAGTTCTCATAATTCAAAATGACAAGGTTTGATGAGTTTTAATGTTTGTTTAATGGTTTATTTTGCTTCATGTACATCACTTATTGATGTAAAATTGATCAATTCAATGTTCTTATATGAAATAGATTAAACATGCCCTCGTTTTATGCATGCTCAAAATGATCACTATGACATATAACATGATTTATTACCATATATGCAACGTTAGATCATATGTATGTTGTGGTGTCTTTTGTTGTCGGCAGGAAAAATCGCATTTAGCAGGATGGGCTACACAACCAAGTGTTCCTAATTGTATCGTATCACACCTAACTTTTATTCAGTTTAAAGGATATCAAGGACTTCCAGATGAGCTATTATTTGCTGAGTATATCCTGCAAAAAGGACTTGTTTTGAAAACAATGATTATTGATGATATTTCAGTGGACCTAACCAACAAGTTCAACATTCTTAATAAGTTGTCCAAAGTGAGAAGGGATGGAACTGGCAAACTTTTATTTGACTGA
Protein sequence

>MS.gene36938.t1

MRLSCTKLLVQNEFCIDSVDTWIRTVTGPHLKELDLLLDVDDNEVSVEYDLPITLLSGCTNLDFHLPSLKKLKVCAMSMPQMNEFLDGCPILETLDTYFFYGNYTDFLVGDLRVPPTLKRLKINFDTGSVAPRIYYLSLTQIRFGDVGNLQNVVRASLDVFPSSGYHSFLFTCLLKLLNALSGIKHLVLGCSTTKWLLRGPADLPFPEFYHLLHLELILPWFNSNFLLSLLQTCHHLQVLIIQNDKEKSHLAGWATQPSVPNCIVSHLTFIQFKGYQGLPDELLFAEYILQKGLVLKTMIIDDISVDLTNKFNILNKLSKVRRDGTGKLLFD