Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53525.t1 | XP_003590158.1 | 96.9 | 127 | 4 | 0 | 1 | 127 | 1 | 127 | 2.50E-61 | 244.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53525.t1 | Q9SL05 | 75.9 | 133 | 23 | 4 | 2 | 127 | 3 | 133 | 1.5e-46 | 186.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53525.t1 | G7I6M5 | 96.9 | 127 | 4 | 0 | 1 | 127 | 1 | 127 | 1.8e-61 | 244.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene53525 | 0.809953 | 1.47E-50 | -1.69E-46 |
| MS.gene049171 | MS.gene53525 | 0.825728 | 4.00E-54 | -1.69E-46 |
| MS.gene049173 | MS.gene53525 | 0.814299 | 1.65E-51 | -1.69E-46 |
| MS.gene049217 | MS.gene53525 | 0.828625 | 8.10E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene53525 | 0.832824 | 7.58E-56 | -1.69E-46 |
| MS.gene049232 | MS.gene53525 | 0.826386 | 2.79E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene53525 | 0.822865 | 1.88E-53 | -1.69E-46 |
| MS.gene049320 | MS.gene53525 | 0.835971 | 1.23E-56 | -1.69E-46 |
| MS.gene049356 | MS.gene53525 | 0.853765 | 1.92E-61 | -1.69E-46 |
| MS.gene049369 | MS.gene53525 | 0.863804 | 1.92E-64 | -1.69E-46 |
| MS.gene049396 | MS.gene53525 | 0.892893 | 1.04E-74 | -1.69E-46 |
| MS.gene049609 | MS.gene53525 | 0.873942 | 9.94E-68 | -1.69E-46 |
| MS.gene049633 | MS.gene53525 | 0.829824 | 4.15E-55 | -1.69E-46 |
| MS.gene049805 | MS.gene53525 | 0.851951 | 6.35E-61 | -1.69E-46 |
| MS.gene050170 | MS.gene53525 | 0.816471 | 5.44E-52 | -1.69E-46 |
| MS.gene050216 | MS.gene53525 | 0.804973 | 1.67E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene53525 | 0.842186 | 3.02E-58 | -1.69E-46 |
| MS.gene050380 | MS.gene53525 | -0.808139 | 3.59E-50 | -1.69E-46 |
| MS.gene050444 | MS.gene53525 | 0.810199 | 1.30E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene53525 | 0.804855 | 1.77E-49 | -1.69E-46 |
| MS.gene050499 | MS.gene53525 | 0.831512 | 1.60E-55 | -1.69E-46 |
| MS.gene050502 | MS.gene53525 | 0.832495 | 9.15E-56 | -1.69E-46 |
| MS.gene050504 | MS.gene53525 | 0.808928 | 2.43E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene53525 | 0.83477 | 2.47E-56 | -1.69E-46 |
| MS.gene050612 | MS.gene53525 | 0.817763 | 2.79E-52 | -1.69E-46 |
| MS.gene050662 | MS.gene53525 | 0.832649 | 8.38E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene53525 | 0.814334 | 1.62E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene53525 | 0.83004 | 3.67E-55 | -1.69E-46 |
| MS.gene050686 | MS.gene53525 | 0.832786 | 7.75E-56 | -1.69E-46 |
| MS.gene050747 | MS.gene53525 | 0.813239 | 2.83E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene53525 | 0.884806 | 1.40E-71 | -1.69E-46 |
| MS.gene050809 | MS.gene53525 | -0.800463 | 1.42E-48 | -1.69E-46 |
| MS.gene05080 | MS.gene53525 | 0.841092 | 5.86E-58 | -1.69E-46 |
| MS.gene05081 | MS.gene53525 | 0.819159 | 1.34E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene53525 | 0.847235 | 1.31E-59 | -1.69E-46 |
| MS.gene050871 | MS.gene53525 | 0.847472 | 1.13E-59 | -1.69E-46 |
| MS.gene050950 | MS.gene53525 | 0.801647 | 8.16E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene53525 | 0.868956 | 4.44E-66 | -1.69E-46 |
| MS.gene051228 | MS.gene53525 | 0.807718 | 4.41E-50 | -1.69E-46 |
| MS.gene051509 | MS.gene53525 | 0.83787 | 4.03E-57 | -1.69E-46 |
| MS.gene051666 | MS.gene53525 | 0.822081 | 2.87E-53 | -1.69E-46 |
| MS.gene051692 | MS.gene53525 | 0.832224 | 1.07E-55 | -1.69E-46 |
| MS.gene051734 | MS.gene53525 | 0.839569 | 1.47E-57 | -1.69E-46 |
| MS.gene051810 | MS.gene53525 | 0.82701 | 1.98E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene53525 | 0.842605 | 2.33E-58 | -1.69E-46 |
| MS.gene051858 | MS.gene53525 | 0.862589 | 4.55E-64 | -1.69E-46 |
| MS.gene051874 | MS.gene53525 | 0.879123 | 1.61E-69 | -1.69E-46 |
| MS.gene052136 | MS.gene53525 | 0.81261 | 3.89E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene53525 | 0.845098 | 5.02E-59 | -1.69E-46 |
| MS.gene052346 | MS.gene53525 | 0.829901 | 3.97E-55 | -1.69E-46 |
| MS.gene05240 | MS.gene53525 | -0.80812 | 3.62E-50 | -1.69E-46 |
| MS.gene052414 | MS.gene53525 | 0.846914 | 1.61E-59 | -1.69E-46 |
| MS.gene052421 | MS.gene53525 | 0.830941 | 2.21E-55 | -1.69E-46 |
| MS.gene052481 | MS.gene53525 | 0.800012 | 1.76E-48 | -1.69E-46 |
| MS.gene052484 | MS.gene53525 | 0.824213 | 9.12E-54 | -1.69E-46 |
| MS.gene052501 | MS.gene53525 | 0.81384 | 2.09E-51 | -1.69E-46 |
| MS.gene052503 | MS.gene53525 | 0.828716 | 7.70E-55 | -1.69E-46 |
| MS.gene052505 | MS.gene53525 | 0.814095 | 1.83E-51 | -1.69E-46 |
| MS.gene052506 | MS.gene53525 | 0.816322 | 5.87E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene53525 | 0.848538 | 5.75E-60 | -1.69E-46 |
| MS.gene052822 | MS.gene53525 | 0.827052 | 1.94E-54 | -1.69E-46 |
| MS.gene052823 | MS.gene53525 | 0.82627 | 2.97E-54 | -1.69E-46 |
| MS.gene052825 | MS.gene53525 | 0.817107 | 3.91E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene53525 | 0.827263 | 1.72E-54 | -1.69E-46 |
| MS.gene052872 | MS.gene53525 | 0.834826 | 2.39E-56 | -1.69E-46 |
| MS.gene052916 | MS.gene53525 | 0.820032 | 8.50E-53 | -1.69E-46 |
| MS.gene052966 | MS.gene53525 | 0.832519 | 9.02E-56 | -1.69E-46 |
| MS.gene052999 | MS.gene53525 | 0.832078 | 1.16E-55 | -1.69E-46 |
| MS.gene053018 | MS.gene53525 | 0.810309 | 1.23E-50 | -1.69E-46 |
| MS.gene053104 | MS.gene53525 | 0.818992 | 1.47E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene53525 | 0.809754 | 1.62E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene53525 | 0.826692 | 2.36E-54 | -1.69E-46 |
| MS.gene053213 | MS.gene53525 | 0.824741 | 6.85E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene53525 | 0.816723 | 4.77E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene53525 | -0.819378 | 1.20E-52 | -1.69E-46 |
| MS.gene053449 | MS.gene53525 | 0.897893 | 9.03E-77 | -1.69E-46 |
| MS.gene053479 | MS.gene53525 | 0.802629 | 5.12E-49 | -1.69E-46 |
| MS.gene053480 | MS.gene53525 | 0.8114 | 7.14E-51 | -1.69E-46 |
| MS.gene053505 | MS.gene53525 | 0.834863 | 2.34E-56 | -1.69E-46 |
| MS.gene053574 | MS.gene53525 | 0.8757 | 2.51E-68 | -1.69E-46 |
| MS.gene053626 | MS.gene53525 | 0.828625 | 8.10E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene53525 | 0.837725 | 4.39E-57 | -1.69E-46 |
| MS.gene053758 | MS.gene53525 | 0.814577 | 1.44E-51 | -1.69E-46 |
| MS.gene053813 | MS.gene53525 | 0.825193 | 5.36E-54 | -1.69E-46 |
| MS.gene053824 | MS.gene53525 | 0.870561 | 1.33E-66 | -1.69E-46 |
| MS.gene053912 | MS.gene53525 | 0.877157 | 7.87E-69 | -1.69E-46 |
| MS.gene053916 | MS.gene53525 | 0.888476 | 5.71E-73 | -1.69E-46 |
| MS.gene054003 | MS.gene53525 | 0.837852 | 4.07E-57 | -1.69E-46 |
| MS.gene054595 | MS.gene53525 | 0.820462 | 6.77E-53 | -1.69E-46 |
| MS.gene054600 | MS.gene53525 | 0.824742 | 6.85E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene53525 | 0.824233 | 9.02E-54 | -1.69E-46 |
| MS.gene054706 | MS.gene53525 | -0.80915 | 2.18E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene53525 | 0.817507 | 3.18E-52 | -1.69E-46 |
| MS.gene05494 | MS.gene53525 | 0.87729 | 7.07E-69 | -1.69E-46 |
| MS.gene054954 | MS.gene53525 | 0.810184 | 1.31E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene53525 | 0.873565 | 1.33E-67 | -1.69E-46 |
| MS.gene055116 | MS.gene53525 | 0.803366 | 3.61E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene53525 | 0.831039 | 2.09E-55 | -1.69E-46 |
| MS.gene055224 | MS.gene53525 | 0.84881 | 4.84E-60 | -1.69E-46 |
| MS.gene055289 | MS.gene53525 | 0.835426 | 1.69E-56 | -1.69E-46 |
| MS.gene055362 | MS.gene53525 | 0.824863 | 6.41E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene53525 | 0.831558 | 1.56E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene53525 | 0.849721 | 2.70E-60 | -1.69E-46 |
| MS.gene055722 | MS.gene53525 | 0.882991 | 6.54E-71 | -1.69E-46 |
| MS.gene055741 | MS.gene53525 | 0.824862 | 6.41E-54 | -1.69E-46 |
| MS.gene055744 | MS.gene53525 | 0.82226 | 2.61E-53 | -1.69E-46 |
| MS.gene055750 | MS.gene53525 | 0.812359 | 4.41E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene53525 | 0.830346 | 3.09E-55 | -1.69E-46 |
| MS.gene055909 | MS.gene53525 | 0.84038 | 9.01E-58 | -1.69E-46 |
| MS.gene055911 | MS.gene53525 | 0.837121 | 6.26E-57 | -1.69E-46 |
| MS.gene05592 | MS.gene53525 | 0.848005 | 8.08E-60 | -1.69E-46 |
| MS.gene055941 | MS.gene53525 | 0.852807 | 3.62E-61 | -1.69E-46 |
| MS.gene056166 | MS.gene53525 | 0.836249 | 1.05E-56 | -1.69E-46 |
| MS.gene056387 | MS.gene53525 | 0.846868 | 1.66E-59 | -1.69E-46 |
| MS.gene056422 | MS.gene53525 | 0.874567 | 6.11E-68 | -1.69E-46 |
| MS.gene056448 | MS.gene53525 | 0.848695 | 5.20E-60 | -1.69E-46 |
| MS.gene056487 | MS.gene53525 | 0.852769 | 3.71E-61 | -1.69E-46 |
| MS.gene056504 | MS.gene53525 | 0.84431 | 8.18E-59 | -1.69E-46 |
| MS.gene056510 | MS.gene53525 | 0.805636 | 1.21E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene53525 | 0.868364 | 6.90E-66 | -1.69E-46 |
| MS.gene05664 | MS.gene53525 | 0.831732 | 1.41E-55 | -1.69E-46 |
| MS.gene056657 | MS.gene53525 | 0.828037 | 1.12E-54 | -1.69E-46 |
| MS.gene05666 | MS.gene53525 | 0.838541 | 2.71E-57 | -1.69E-46 |
| MS.gene056878 | MS.gene53525 | 0.80289 | 4.53E-49 | -1.69E-46 |
| MS.gene057048 | MS.gene53525 | 0.813319 | 2.72E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene53525 | 0.899063 | 2.87E-77 | -1.69E-46 |
| MS.gene057086 | MS.gene53525 | 0.874958 | 4.50E-68 | -1.69E-46 |
| MS.gene057124 | MS.gene53525 | 0.806803 | 6.89E-50 | -1.69E-46 |
| MS.gene057289 | MS.gene53525 | 0.820323 | 7.29E-53 | -1.69E-46 |
| MS.gene057331 | MS.gene53525 | 0.820737 | 5.85E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene53525 | 0.833757 | 4.44E-56 | -1.69E-46 |
| MS.gene057734 | MS.gene53525 | 0.878991 | 1.79E-69 | -1.69E-46 |
| MS.gene057749 | MS.gene53525 | 0.804878 | 1.75E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene53525 | 0.817156 | 3.82E-52 | -1.69E-46 |
| MS.gene057856 | MS.gene53525 | 0.852292 | 5.08E-61 | -1.69E-46 |
| MS.gene057857 | MS.gene53525 | 0.856139 | 3.94E-62 | -1.69E-46 |
| MS.gene057926 | MS.gene53525 | 0.86683 | 2.14E-65 | -1.69E-46 |
| MS.gene058006 | MS.gene53525 | 0.815056 | 1.12E-51 | -1.69E-46 |
| MS.gene058075 | MS.gene53525 | 0.800136 | 1.66E-48 | -1.69E-46 |
| MS.gene058120 | MS.gene53525 | 0.821076 | 4.89E-53 | -1.69E-46 |
| MS.gene058130 | MS.gene53525 | 0.833042 | 6.69E-56 | -1.69E-46 |
| MS.gene058338 | MS.gene53525 | 0.829419 | 5.20E-55 | -1.69E-46 |
| MS.gene058376 | MS.gene53525 | 0.802628 | 5.13E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene53525 | 0.815343 | 9.70E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene53525 | 0.848738 | 5.06E-60 | -1.69E-46 |
| MS.gene058459 | MS.gene53525 | 0.838842 | 2.26E-57 | -1.69E-46 |
| MS.gene058723 | MS.gene53525 | 0.846599 | 1.96E-59 | -1.69E-46 |
| MS.gene058773 | MS.gene53525 | 0.804038 | 2.62E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene53525 | 0.842764 | 2.12E-58 | -1.69E-46 |
| MS.gene058928 | MS.gene53525 | 0.829386 | 5.30E-55 | -1.69E-46 |
| MS.gene058948 | MS.gene53525 | 0.80481 | 1.81E-49 | -1.69E-46 |
| MS.gene058978 | MS.gene53525 | -0.801927 | 7.15E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene53525 | 0.818023 | 2.43E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene53525 | 0.826555 | 2.54E-54 | -1.69E-46 |
| MS.gene059037 | MS.gene53525 | -0.806144 | 9.49E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene53525 | 0.876384 | 1.46E-68 | -1.69E-46 |
| MS.gene059305 | MS.gene53525 | 0.812606 | 3.90E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene53525 | 0.824744 | 6.84E-54 | -1.69E-46 |
| MS.gene059366 | MS.gene53525 | 0.826799 | 2.22E-54 | -1.69E-46 |
| MS.gene059367 | MS.gene53525 | 0.859489 | 3.99E-63 | -1.69E-46 |
| MS.gene059368 | MS.gene53525 | 0.863703 | 2.06E-64 | -1.69E-46 |
| MS.gene059402 | MS.gene53525 | -0.822794 | 1.96E-53 | -1.69E-46 |
| MS.gene059455 | MS.gene53525 | 0.840163 | 1.03E-57 | -1.69E-46 |
| MS.gene059536 | MS.gene53525 | 0.801062 | 1.08E-48 | -1.69E-46 |
| MS.gene059667 | MS.gene53525 | 0.826979 | 2.01E-54 | -1.69E-46 |
| MS.gene059674 | MS.gene53525 | 0.85419 | 1.45E-61 | -1.69E-46 |
| MS.gene059677 | MS.gene53525 | 0.814969 | 1.18E-51 | -1.69E-46 |
| MS.gene059680 | MS.gene53525 | 0.831592 | 1.53E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene53525 | 0.808154 | 3.56E-50 | -1.69E-46 |
| MS.gene059711 | MS.gene53525 | 0.835986 | 1.22E-56 | -1.69E-46 |
| MS.gene059718 | MS.gene53525 | 0.844677 | 6.52E-59 | -1.69E-46 |
| MS.gene059807 | MS.gene53525 | 0.845821 | 3.20E-59 | -1.69E-46 |
| MS.gene059865 | MS.gene53525 | 0.858758 | 6.61E-63 | -1.69E-46 |
| MS.gene059902 | MS.gene53525 | 0.854655 | 1.07E-61 | -1.69E-46 |
| MS.gene059955 | MS.gene53525 | -0.800379 | 1.48E-48 | -1.69E-46 |
| MS.gene06000 | MS.gene53525 | 0.806101 | 9.69E-50 | -1.69E-46 |
| MS.gene060372 | MS.gene53525 | 0.830476 | 2.88E-55 | -1.69E-46 |
| MS.gene060403 | MS.gene53525 | 0.804598 | 2.00E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene53525 | 0.845058 | 5.15E-59 | -1.69E-46 |
| MS.gene060593 | MS.gene53525 | -0.801744 | 7.79E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene53525 | 0.837455 | 5.14E-57 | -1.69E-46 |
| MS.gene060778 | MS.gene53525 | 0.851569 | 8.15E-61 | -1.69E-46 |
| MS.gene06077 | MS.gene53525 | 0.800567 | 1.36E-48 | -1.69E-46 |
| MS.gene060804 | MS.gene53525 | 0.841064 | 5.96E-58 | -1.69E-46 |
| MS.gene060818 | MS.gene53525 | 0.834249 | 3.34E-56 | -1.69E-46 |
| MS.gene060835 | MS.gene53525 | 0.866997 | 1.89E-65 | -1.69E-46 |
| MS.gene060837 | MS.gene53525 | 0.878093 | 3.71E-69 | -1.69E-46 |
| MS.gene06092 | MS.gene53525 | 0.8041 | 2.54E-49 | -1.69E-46 |
| MS.gene06097 | MS.gene53525 | 0.868173 | 7.95E-66 | -1.69E-46 |
| MS.gene060981 | MS.gene53525 | 0.809701 | 1.66E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene53525 | 0.834161 | 3.52E-56 | -1.69E-46 |
| MS.gene061041 | MS.gene53525 | 0.863584 | 2.24E-64 | -1.69E-46 |
| MS.gene061134 | MS.gene53525 | 0.808044 | 3.76E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53525.t1 | MTR_1g045140 | 96.850 | 127 | 4 | 0 | 1 | 127 | 1 | 127 | 3.94e-89 | 254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53525.t1 | AT2G05620 | 75.940 | 133 | 23 | 4 | 2 | 127 | 3 | 133 | 8.71e-66 | 196 |
| MS.gene53525.t1 | AT2G05620 | 75.940 | 133 | 23 | 4 | 2 | 127 | 3 | 133 | 8.71e-66 | 196 |
Find 29 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACGTTTCAATCAGCTTAG+AGG | 0.319386 | 1.2:-27840087 | MS.gene53525:CDS |
| TCATTAACATTCTTCATCAT+AGG | 0.355579 | 1.2:+27840165 | None:intergenic |
| GCCACTTCAATTTCTGCAAC+AGG | 0.355663 | 1.2:-27840315 | MS.gene53525:CDS |
| ACTGAATTCTGCAAATCAAT+AGG | 0.397917 | 1.2:-27839260 | MS.gene53525:CDS |
| AACAGAGACAAGGGTTGATC+AGG | 0.409880 | 1.2:-27839226 | MS.gene53525:CDS |
| TGTGTTGGTTCATCATTCTA+TGG | 0.416628 | 1.2:-27840291 | MS.gene53525:CDS |
| TTACGAGTAACCACAACAAT+TGG | 0.430918 | 1.2:+27840123 | None:intergenic |
| AGCCATTGCTTTACACTCTC+AGG | 0.432190 | 1.2:-27840061 | MS.gene53525:intron |
| GTTTCATCACAAGTTCGTAT+TGG | 0.445319 | 1.2:-27840216 | MS.gene53525:CDS |
| GTTCATCATTCTATGGAAGC+TGG | 0.445752 | 1.2:-27840284 | MS.gene53525:CDS |
| GTGGTTACTCGTAATATTGT+TGG | 0.474864 | 1.2:-27840114 | MS.gene53525:CDS |
| ATTTCTGCAACAGGTTGTGT+TGG | 0.484427 | 1.2:-27840306 | MS.gene53525:CDS |
| AGCTGGGGAACTTCTATAGT+TGG | 0.486890 | 1.2:-27840267 | MS.gene53525:CDS |
| ATCATAGGTTGCAACCTCAC+TGG | 0.491055 | 1.2:+27840180 | None:intergenic |
| TTCATCATTCTATGGAAGCT+GGG | 0.491238 | 1.2:-27840283 | MS.gene53525:CDS |
| ATCAGGTTGGCTAAGAAGAA+TGG | 0.492634 | 1.2:-27839209 | MS.gene53525:CDS |
| ATGATGAAGAATGTTAATGA+AGG | 0.502442 | 1.2:-27840162 | MS.gene53525:CDS |
| TATATTTGCTCCAATTGTTG+TGG | 0.534523 | 1.2:-27840133 | MS.gene53525:CDS |
| AAGAAGAATGGAGAATGGCT+TGG | 0.545873 | 1.2:-27839197 | MS.gene53525:CDS |
| AAGAATGTTAATGAAGGGAA+AGG | 0.566696 | 1.2:-27840156 | MS.gene53525:CDS |
| GAGACAAGGGTTGATCAGGT+TGG | 0.575573 | 1.2:-27839222 | MS.gene53525:CDS |
| ACCTGTTGCAGAAATTGAAG+TGG | 0.588366 | 1.2:+27840314 | None:intergenic |
| TGGCTAAGAAGAATGGAGAA+TGG | 0.601122 | 1.2:-27839202 | MS.gene53525:CDS |
| TGATGAAGAATGTTAATGAA+GGG | 0.601637 | 1.2:-27840161 | MS.gene53525:CDS |
| CACCTGAGAGTGTAAAGCAA+TGG | 0.607087 | 1.2:+27840059 | None:intergenic |
| GCAGATGCAAAACAGAGACA+AGG | 0.627180 | 1.2:-27839236 | MS.gene53525:CDS |
| TCATCATTCTATGGAAGCTG+GGG | 0.629743 | 1.2:-27840282 | MS.gene53525:CDS |
| GAAGAGTTAGTAAGCCAGTG+AGG | 0.661265 | 1.2:-27840194 | MS.gene53525:CDS |
| CAGATGCAAAACAGAGACAA+GGG | 0.674066 | 1.2:-27839235 | MS.gene53525:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTGAATAAAATATGA+TGG | - | chr1.2:27840161-27840180 | MS.gene53525:CDS | 10.0% |
| !! | AAACTAAAGATAAAAAATGA+AGG | - | chr1.2:27839791-27839810 | MS.gene53525:intron | 15.0% |
| !! | AGAATTTATCAAATGGAAAA+TGG | - | chr1.2:27839729-27839748 | MS.gene53525:intron | 20.0% |
| !! | TTCAAGTAGAATTTATCAAA+TGG | - | chr1.2:27839722-27839741 | MS.gene53525:intron | 20.0% |
| !!! | ACTTGAATTATGATTTTATG+TGG | - | chr1.2:27839640-27839659 | MS.gene53525:intron | 20.0% |
| !!! | CTTCAATATTTTGAAATGTT+AGG | - | chr1.2:27840214-27840233 | MS.gene53525:CDS | 20.0% |
| ! | AGCAATTGTTTCAAAATCTT+TGG | - | chr1.2:27840131-27840150 | MS.gene53525:CDS | 25.0% |
| ! | ATGATGAAGAATGTTAATGA+AGG | - | chr1.2:27839340-27839359 | MS.gene53525:intron | 25.0% |
| ! | ATTGTTTCAAAATCTTTGGT+TGG | - | chr1.2:27840135-27840154 | MS.gene53525:CDS | 25.0% |
| ! | CATTTAGTATCCTTTCAAAA+AGG | + | chr1.2:27840008-27840027 | None:intergenic | 25.0% |
| ! | TCATTAACATTCTTCATCAT+AGG | + | chr1.2:27839340-27839359 | None:intergenic | 25.0% |
| ! | TGATGAAGAATGTTAATGAA+GGG | - | chr1.2:27839341-27839360 | MS.gene53525:intron | 25.0% |
| !! | AGTTGAATTTCCTTTTTGAA+AGG | - | chr1.2:27839995-27840014 | MS.gene53525:intron | 25.0% |
| !! | TCAAAAACCTTGATTTTATC+TGG | - | chr1.2:27839929-27839948 | MS.gene53525:intron | 25.0% |
| !!! | CTTTTTGAAAGGATACTAAA+TGG | - | chr1.2:27840006-27840025 | MS.gene53525:intron | 25.0% |
| !!! | GATATTTTAGTGTTACAACT+AGG | - | chr1.2:27839592-27839611 | MS.gene53525:intron | 25.0% |
| AAGAATGTTAATGAAGGGAA+AGG | - | chr1.2:27839346-27839365 | MS.gene53525:intron | 30.0% | |
| ACTGAATTCTGCAAATCAAT+AGG | - | chr1.2:27840242-27840261 | MS.gene53525:CDS | 30.0% | |
| CAAAGTTTGGTTAGATTGAA+GGG | - | chr1.2:27839674-27839693 | MS.gene53525:intron | 30.0% | |
| GGTTTATCTGTTTCAAAGTT+TGG | - | chr1.2:27839661-27839680 | MS.gene53525:intron | 30.0% | |
| TATATTTGCTCCAATTGTTG+TGG | - | chr1.2:27839369-27839388 | MS.gene53525:intron | 30.0% | |
| TCAAAGTTTGGTTAGATTGA+AGG | - | chr1.2:27839673-27839692 | MS.gene53525:intron | 30.0% | |
| TTATATCGCGTAATCAAATG+CGG | - | chr1.2:27839863-27839882 | MS.gene53525:intron | 30.0% | |
| ! | TCTTTCTTGTTCATGTCTTT+TGG | - | chr1.2:27839548-27839567 | MS.gene53525:intron | 30.0% |
| !! | GAATTTTGTTTGTGAGGTAT+TGG | - | chr1.2:27839570-27839589 | MS.gene53525:intron | 30.0% |
| !!! | CTTTTGGAATTTTGTTTGTG+AGG | - | chr1.2:27839564-27839583 | MS.gene53525:intron | 30.0% |
| AAACGTTTCAATCAGCTTAG+AGG | - | chr1.2:27839415-27839434 | MS.gene53525:intron | 35.0% | |
| ACACAGACCAGATAAAATCA+AGG | + | chr1.2:27839939-27839958 | None:intergenic | 35.0% | |
| ATGAGAGATTGAGAATTGTG+TGG | - | chr1.2:27840107-27840126 | MS.gene53525:CDS | 35.0% | |
| GTGGTTACTCGTAATATTGT+TGG | - | chr1.2:27839388-27839407 | MS.gene53525:intron | 35.0% | |
| GTGTAATAGGACTTCGATTA+TGG | + | chr1.2:27839898-27839917 | None:intergenic | 35.0% | |
| GTTTCATCACAAGTTCGTAT+TGG | - | chr1.2:27839286-27839305 | MS.gene53525:intron | 35.0% | |
| TTACGAGTAACCACAACAAT+TGG | + | chr1.2:27839382-27839401 | None:intergenic | 35.0% | |
| TTCATCATTCTATGGAAGCT+GGG | - | chr1.2:27839219-27839238 | MS.gene53525:CDS | 35.0% | |
| ! | GATTTTATCTGGTCTGTGTT+TGG | - | chr1.2:27839940-27839959 | MS.gene53525:intron | 35.0% |
| !! | TGTGTTGGTTCATCATTCTA+TGG | - | chr1.2:27839211-27839230 | MS.gene53525:CDS | 35.0% |
| AAGAAGAATGGAGAATGGCT+TGG | - | chr1.2:27840305-27840324 | MS.gene53525:CDS | 40.0% | |
| ACCTGTTGCAGAAATTGAAG+TGG | + | chr1.2:27839191-27839210 | None:intergenic | 40.0% | |
| ATTTCTGCAACAGGTTGTGT+TGG | - | chr1.2:27839196-27839215 | MS.gene53525:CDS | 40.0% | |
| CAGATGCAAAACAGAGACAA+GGG | - | chr1.2:27840267-27840286 | MS.gene53525:CDS | 40.0% | |
| GATGTCTCTACGAGTGTAAT+AGG | + | chr1.2:27839911-27839930 | None:intergenic | 40.0% | |
| GTTCATCATTCTATGGAAGC+TGG | - | chr1.2:27839218-27839237 | MS.gene53525:CDS | 40.0% | |
| TCAAAGTCGTGTAATAGTCG+TGG | - | chr1.2:27839825-27839844 | MS.gene53525:intron | 40.0% | |
| TCATCATTCTATGGAAGCTG+GGG | - | chr1.2:27839220-27839239 | MS.gene53525:CDS | 40.0% | |
| TGGCTAAGAAGAATGGAGAA+TGG | - | chr1.2:27840300-27840319 | MS.gene53525:CDS | 40.0% | |
| !! | ATCAGGTTGGCTAAGAAGAA+TGG | - | chr1.2:27840293-27840312 | MS.gene53525:CDS | 40.0% |
| AGCCATTGCTTTACACTCTC+AGG | - | chr1.2:27839441-27839460 | MS.gene53525:intron | 45.0% | |
| AGCTGGGGAACTTCTATAGT+TGG | - | chr1.2:27839235-27839254 | MS.gene53525:CDS | 45.0% | |
| ATCATAGGTTGCAACCTCAC+TGG | + | chr1.2:27839325-27839344 | None:intergenic | 45.0% | |
| GAAGAGTTAGTAAGCCAGTG+AGG | - | chr1.2:27839308-27839327 | MS.gene53525:intron | 45.0% | |
| GCAGATGCAAAACAGAGACA+AGG | - | chr1.2:27840266-27840285 | MS.gene53525:CDS | 45.0% | |
| GCCACTTCAATTTCTGCAAC+AGG | - | chr1.2:27839187-27839206 | MS.gene53525:CDS | 45.0% | |
| ! | AACAGAGACAAGGGTTGATC+AGG | - | chr1.2:27840276-27840295 | MS.gene53525:CDS | 45.0% |
| ! | CACCTGAGAGTGTAAAGCAA+TGG | + | chr1.2:27839446-27839465 | None:intergenic | 45.0% |
| !! | AAAAATGTAATTTATATATT+AGG | - | chr1.2:27839757-27839776 | MS.gene53525:intron | 5.0% |
| ! | GAGACAAGGGTTGATCAGGT+TGG | - | chr1.2:27840280-27840299 | MS.gene53525:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 27839184 | 27840340 | 27839184 | ID=MS.gene53525 |
| chr1.2 | mRNA | 27839184 | 27840340 | 27839184 | ID=MS.gene53525.t1;Parent=MS.gene53525 |
| chr1.2 | exon | 27840062 | 27840340 | 27840062 | ID=MS.gene53525.t1.exon1;Parent=MS.gene53525.t1 |
| chr1.2 | CDS | 27840062 | 27840340 | 27840062 | ID=cds.MS.gene53525.t1;Parent=MS.gene53525.t1 |
| chr1.2 | exon | 27839184 | 27839288 | 27839184 | ID=MS.gene53525.t1.exon2;Parent=MS.gene53525.t1 |
| chr1.2 | CDS | 27839184 | 27839288 | 27839184 | ID=cds.MS.gene53525.t1;Parent=MS.gene53525.t1 |
| Gene Sequence |
| Protein sequence |
