AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62455

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62455.t1 MTR_8g014260 36.076 474 144 13 1 338 1 451 7.67e-64 209
MS.gene62455.t1 MTR_8g077460 34.559 408 164 12 1 338 1 375 3.03e-57 190
MS.gene62455.t1 MTR_8g014160 58.065 186 74 3 156 338 241 425 3.46e-57 191
MS.gene62455.t1 MTR_8g014160 46.667 180 79 4 12 190 36 199 9.84e-37 137
MS.gene62455.t1 MTR_8g445780 32.311 424 122 12 1 293 1 390 3.88e-45 159
MS.gene62455.t1 MTR_8g014230 82.759 87 15 0 252 338 18 104 2.66e-44 147
MS.gene62455.t1 MTR_4g024710 41.079 241 82 5 144 329 102 337 2.21e-41 147
MS.gene62455.t1 MTR_8g467800 28.918 453 151 13 6 313 3 429 4.89e-41 149
MS.gene62455.t1 MTR_4g024745 40.343 233 79 5 144 321 56 283 1.69e-39 141
MS.gene62455.t1 MTR_5g021550 45.806 155 65 2 1 153 1 138 4.28e-38 134
MS.gene62455.t1 MTR_8g468810 29.412 459 161 16 1 317 1 438 1.82e-36 137
MS.gene62455.t1 MTR_8g014210 40.171 234 77 6 162 338 4 231 7.84e-36 130
MS.gene62455.t1 MTR_8g014290 43.506 154 76 2 15 168 8 150 4.86e-35 125
MS.gene62455.t1 MTR_4g024720 46.207 145 59 4 1 144 1 127 3.89e-32 119
MS.gene62455.t1 MTR_2g083840 32.209 326 119 10 7 252 11 314 3.02e-30 120
MS.gene62455.t1 MTR_2g083840 33.068 251 97 7 125 319 199 434 2.40e-22 97.8
MS.gene62455.t1 MTR_8g468810 30.678 339 124 12 1 252 1 315 3.96e-29 114
MS.gene62455.t1 MTR_8g468810 30.678 339 124 12 1 252 1 315 4.32e-29 115
MS.gene62455.t1 MTR_8g468810 30.678 339 124 12 1 252 1 315 6.21e-29 114
MS.gene62455.t1 MTR_8g468810 30.678 339 124 12 1 252 1 315 1.37e-28 114
MS.gene62455.t1 MTR_8g467800 28.743 334 126 10 5 252 2 309 3.49e-27 109
MS.gene62455.t1 MTR_8g468840 36.257 171 91 5 16 186 13 165 1.05e-25 107
MS.gene62455.t1 MTR_8g468840 45.238 84 44 2 253 335 365 447 3.04e-15 76.6
MS.gene62455.t1 MTR_8g058970 29.683 347 129 13 3 252 2 330 9.04e-25 104
MS.gene62455.t1 MTR_8g058970 52.830 53 25 0 265 317 400 452 1.60e-11 65.5
MS.gene62455.t1 MTR_4g032730 29.534 386 153 20 6 307 2 352 1.19e-23 101
MS.gene62455.t1 MTR_4g032730 53.333 60 27 1 254 312 382 441 1.94e-13 71.2
MS.gene62455.t1 MTR_8g062270 37.278 169 88 5 17 184 16 167 3.22e-23 100
MS.gene62455.t1 MTR_8g062270 48.936 94 42 3 162 252 222 312 8.33e-11 63.2
MS.gene62455.t1 MTR_5g092960 39.865 148 69 5 17 162 19 148 4.31e-22 97.1
MS.gene62455.t1 MTR_5g092960 44.872 78 40 2 253 329 377 452 1.98e-12 68.2
MS.gene62455.t1 MTR_5g092960 50.000 94 38 3 167 252 229 321 5.10e-12 67.0
MS.gene62455.t1 MTR_5g092960 39.865 148 69 5 17 162 19 148 7.06e-22 95.9
MS.gene62455.t1 MTR_5g092960 50.000 94 38 3 167 252 229 321 6.56e-12 66.2
MS.gene62455.t1 MTR_4g113810 86.000 50 7 0 158 207 119 168 1.17e-21 90.5
MS.gene62455.t1 MTR_4g113810 57.576 66 26 1 116 181 1 64 1.07e-15 74.3
MS.gene62455.t1 MTR_4g050250 39.490 157 75 6 3 155 4 144 2.21e-21 94.7
MS.gene62455.t1 MTR_8g469020 35.052 194 102 7 12 202 2 174 3.57e-21 94.4
MS.gene62455.t1 MTR_8g469020 43.636 110 57 4 234 338 342 451 3.56e-14 73.6
MS.gene62455.t1 MTR_8g468760 38.217 157 81 5 14 170 6 146 5.44e-21 93.6
MS.gene62455.t1 MTR_8g468760 36.410 195 91 7 160 324 213 404 1.96e-16 80.1
MS.gene62455.t1 MTR_4g024770 58.462 65 27 0 1 65 8 72 5.92e-21 85.9
MS.gene62455.t1 MTR_8g062010 37.654 162 73 6 6 166 2 136 1.51e-20 92.4
MS.gene62455.t1 MTR_8g062010 40.909 110 60 4 234 338 321 430 4.69e-14 73.2
MS.gene62455.t1 MTR_7g032380 28.358 335 209 10 17 324 11 341 2.26e-20 90.9
MS.gene62455.t1 MTR_8g070950 38.462 169 74 7 1 168 1 140 2.54e-19 88.6
MS.gene62455.t1 MTR_8g070950 45.161 93 48 3 249 338 342 434 7.32e-14 72.4
MS.gene62455.t1 MTR_2g086020 29.855 345 162 14 43 338 2 315 3.36e-19 87.0
MS.gene62455.t1 MTR_8g058965 34.328 201 102 7 12 202 2 182 1.82e-18 86.3
MS.gene62455.t1 MTR_8g058965 47.312 93 46 3 249 338 364 456 3.20e-14 73.6
MS.gene62455.t1 MTR_8g062080 33.178 214 105 9 3 204 4 191 2.01e-18 86.3
MS.gene62455.t1 MTR_8g062080 45.161 93 48 3 249 338 353 445 1.23e-13 72.0
MS.gene62455.t1 MTR_8g014180 60.345 58 23 0 1 58 1 58 7.81e-18 77.0
MS.gene62455.t1 MTR_8g467790 38.235 136 62 5 17 151 148 262 1.75e-17 83.6
MS.gene62455.t1 MTR_7g033915 26.862 376 187 11 17 332 11 358 1.54e-16 80.1
MS.gene62455.t1 MTR_8g014220 66.038 53 16 1 1 51 1 53 4.17e-16 75.1
MS.gene62455.t1 MTR_8g014220 82.927 41 7 0 113 153 55 95 2.34e-15 73.2
MS.gene62455.t1 MTR_3g108560 24.928 349 200 10 14 308 17 357 4.31e-16 79.0
MS.gene62455.t1 MTR_8g062310 47.312 93 46 3 249 338 336 428 2.21e-15 77.0
MS.gene62455.t1 MTR_8g062310 37.500 144 58 6 10 151 18 131 5.31e-15 75.9
MS.gene62455.t1 MTR_3g113782 48.438 64 33 0 1 64 1 64 4.50e-15 70.1
MS.gene62455.t1 MTR_7g056447 63.158 57 20 1 16 71 8 64 1.68e-14 73.2
MS.gene62455.t1 MTR_5g073370 24.409 381 173 13 14 312 2 349 3.69e-14 73.2
MS.gene62455.t1 MTR_1089s0010 24.725 364 175 12 17 308 8 344 7.29e-14 72.4
MS.gene62455.t1 MTR_7g026500 25.000 376 168 13 17 305 14 362 1.46e-13 71.2
MS.gene62455.t1 MTR_3g082890 50.000 66 33 0 1 66 1 66 1.82e-13 71.2
MS.gene62455.t1 MTR_3g105060 60.714 56 21 1 17 71 14 69 2.61e-13 70.5
MS.gene62455.t1 MTR_3g082890 50.000 66 33 0 1 66 81 146 2.71e-13 70.9
MS.gene62455.t1 MTR_7g098590 50.000 70 34 1 3 71 4 73 3.04e-13 66.6
MS.gene62455.t1 MTR_2g082860 45.122 82 39 3 6 82 17 97 3.84e-13 65.9
MS.gene62455.t1 MTR_7g033990 34.028 144 62 3 17 155 11 126 6.76e-13 69.3
MS.gene62455.t1 MTR_1g038760 50.000 60 30 0 8 67 6 65 7.24e-13 68.9
MS.gene62455.t1 MTR_1g038760 50.000 60 30 0 8 67 6 65 7.96e-13 68.9
MS.gene62455.t1 MTR_1g041245 34.074 135 62 2 17 151 11 118 8.27e-13 68.9
MS.gene62455.t1 MTR_5g083890 64.583 48 17 0 16 63 5 52 1.73e-12 68.6
MS.gene62455.t1 MTR_8g062300 33.136 169 74 7 1 154 1 145 2.93e-12 67.8
MS.gene62455.t1 MTR_8g062300 41.489 94 50 4 249 338 385 477 1.75e-11 65.5
MS.gene62455.t1 MTR_3g467400 56.897 58 24 1 17 73 3 60 4.02e-12 67.0
MS.gene62455.t1 MTR_7g034090 25.868 317 180 10 16 309 3 287 4.25e-12 67.0
MS.gene62455.t1 MTR_3g114200 49.254 67 32 1 1 65 1 67 4.73e-12 63.9
MS.gene62455.t1 MTR_7g056430 57.692 52 22 0 16 67 8 59 6.66e-12 67.0
MS.gene62455.t1 MTR_3g099830 54.902 51 23 0 17 67 12 62 7.07e-12 66.2
MS.gene62455.t1 MTR_7g056420 57.692 52 22 0 16 67 8 59 7.08e-12 67.0
MS.gene62455.t1 MTR_7g115270 36.029 136 60 4 16 151 11 119 9.51e-12 65.9
MS.gene62455.t1 MTR_7g110960 56.863 51 21 1 1 51 1 50 9.63e-12 60.1
MS.gene62455.t1 MTR_5g060570 54.902 51 23 0 16 66 16 66 1.41e-11 64.3
MS.gene62455.t1 MTR_7g098510 28.054 221 113 6 2 211 3 188 1.42e-11 65.5
MS.gene62455.t1 MTR_7g033940 55.556 54 23 1 19 71 96 149 1.70e-11 63.5
MS.gene62455.t1 MTR_1g095750 53.448 58 26 1 17 73 46 103 1.95e-11 61.6
MS.gene62455.t1 MTR_7g033945 55.357 56 24 1 17 71 11 66 2.14e-11 62.4
MS.gene62455.t1 MTR_3g005980 42.667 75 39 1 1 71 1 75 3.07e-11 64.3
MS.gene62455.t1 MTR_8g066650 47.826 69 32 1 7 71 70 138 3.15e-11 64.7
MS.gene62455.t1 MTR_7g056433 54.098 61 27 1 12 71 7 67 3.39e-11 64.3
MS.gene62455.t1 MTR_3g108150 38.095 105 41 1 16 120 12 92 3.60e-11 64.3
MS.gene62455.t1 MTR_7g081290 51.667 60 29 0 6 65 7 66 3.90e-11 63.2
MS.gene62455.t1 MTR_3g036320 45.205 73 37 1 1 70 1 73 3.94e-11 63.9
MS.gene62455.t1 MTR_3g023630 54.237 59 23 1 17 71 8 66 4.27e-11 63.9
MS.gene62455.t1 MTR_3g023330 46.479 71 32 2 7 71 4 74 5.11e-11 63.5
MS.gene62455.t1 MTR_3g108560 35.955 89 56 1 14 102 17 104 5.37e-11 63.2
MS.gene62455.t1 MTR_2g008320 49.153 59 30 0 9 67 44 102 5.71e-11 63.5
MS.gene62455.t1 MTR_4g080773 32.432 111 68 2 16 126 18 121 6.00e-11 63.9
MS.gene62455.t1 MTR_4g080773 32.432 111 68 2 16 126 18 121 6.68e-11 63.5
MS.gene62455.t1 MTR_8g085430 55.357 56 24 1 17 71 11 66 6.82e-11 63.2
MS.gene62455.t1 MTR_2g101970 53.846 52 24 0 8 59 3 54 7.62e-11 58.2
MS.gene62455.t1 MTR_7g075820 60.417 48 19 0 16 63 5 52 7.96e-11 63.2
MS.gene62455.t1 MTR_1g115245 47.619 63 33 0 7 69 16 78 8.87e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62455.t1 AT3G59200 31.847 157 87 4 17 173 7 143 6.83e-13 69.3
MS.gene62455.t1 AT3G59200 34.074 135 69 4 17 151 7 121 1.62e-12 68.6
MS.gene62455.t1 AT3G59000 26.394 269 139 11 17 281 2 215 8.66e-12 65.9
MS.gene62455.t1 AT3G60040 27.727 220 139 6 16 228 12 218 2.38e-11 65.1
MS.gene62455.t1 AT3G60040 27.727 220 139 6 16 228 231 437 2.65e-11 65.1
MS.gene62455.t1 AT3G60040 27.727 220 139 6 16 228 232 438 2.72e-11 65.1
MS.gene62455.t1 AT3G60040 27.727 220 139 6 16 228 231 437 3.74e-11 64.7
MS.gene62455.t1 AT3G60040 27.727 220 139 6 16 228 229 435 3.91e-11 64.7
MS.gene62455.t1 AT3G59190 28.986 207 113 8 5 203 2 182 7.34e-11 63.2
MS.gene62455.t1 AT5G38386 23.851 348 179 14 17 318 2 309 8.47e-11 63.2
MS.gene62455.t1 AT5G38386 23.851 348 179 14 17 318 2 309 8.47e-11 63.2

Find 67 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGACGCATCTTCCGAATT+TGG 0.256496 8.2:-14485412 None:intergenic
GCTTGTTTCAACAGAGCTTT+TGG 0.290992 8.2:-14485186 None:intergenic
TTCCTCGAGTGATCATTCTT+TGG 0.294564 8.2:+14486047 MS.gene62455:CDS
AACGTCACCGAATCTGATTT+TGG 0.326048 8.2:-14485980 None:intergenic
CAGGAAGAGTCGCCTTTATC+AGG 0.330231 8.2:+14486705 MS.gene62455:intron
AAAACACGCCGTTTACAAAA+AGG 0.351262 8.2:-14485370 None:intergenic
TCAATAAACCCTACCAAATT+CGG 0.357859 8.2:+14485399 MS.gene62455:CDS
CTTTAAACTGAATAAAAGTT+AGG 0.359295 8.2:-14486770 None:intergenic
GATTATTGATGATATTTCAT+TGG 0.361849 8.2:+14486866 MS.gene62455:CDS
CTCGCAGATGGTGCAACGTT+TGG 0.370015 8.2:+14485216 MS.gene62455:CDS
ACATGGGTCCGCTCCATCAT+TGG 0.380102 8.2:+14485485 MS.gene62455:CDS
AGGTGTGATATGATACAATT+AGG 0.381715 8.2:-14486750 None:intergenic
TCAACAAATAATAGCTCATC+TGG 0.390858 8.2:-14486807 None:intergenic
TTATCCCAGAGAGAGCATTA+AGG 0.398455 8.2:-14486092 None:intergenic
AAGCTCCTTAATGCTCTCTC+TGG 0.404539 8.2:+14486087 MS.gene62455:CDS
CGTAGGTGGGAAACAAATAT+TGG 0.406304 8.2:-14485869 None:intergenic
ATTCAGTTTAAAGGATATCA+AGG 0.428602 8.2:+14486780 MS.gene62455:CDS
CATGGGTCCGCTCCATCATT+GGG 0.432825 8.2:+14485486 MS.gene62455:CDS
CAGCTCAAGAACAAGAAGAT+AGG 0.438481 8.2:+14485111 MS.gene62455:CDS
GTCAAATTTGTCAAATTCAA+AGG 0.439842 8.2:-14485273 None:intergenic
GAGCTTGAATAAACATTTGA+AGG 0.443022 8.2:-14486070 None:intergenic
GAATGTCGCACTTCTTACTT+AGG 0.444977 8.2:-14486890 None:intergenic
AACCTTACCAAAATCAGATT+CGG 0.449227 8.2:+14485973 MS.gene62455:CDS
CCGCAATATCGTTGAGTATG+AGG 0.454875 8.2:-14485529 None:intergenic
CATCTTGGTCCATGTCGTCT+TGG 0.463453 8.2:-14485310 None:intergenic
GGGATAAAACATCTATCGTT+GGG 0.485986 8.2:+14486108 MS.gene62455:CDS
ATGTGGCTCAGTATACAGTC+TGG 0.488231 8.2:-14485146 None:intergenic
ATCGTTGGTCCATGTCATCT+TGG 0.488259 8.2:-14485325 None:intergenic
TGTGTAGCCCATCCTGATAA+AGG 0.492199 8.2:-14486717 None:intergenic
CAACTCAGTCAAATATAAGT+TGG 0.492762 8.2:-14486950 None:intergenic
AGGTCAAGTTCCTTGAGGTC+AGG 0.495409 8.2:-14485509 None:intergenic
CTTGAGGTCAGGCCCAATGA+TGG 0.497145 8.2:-14485498 None:intergenic
TGGGATAAAACATCTATCGT+TGG 0.498569 8.2:+14486107 MS.gene62455:CDS
ATAAGTTATATAAAGTGCTA+AGG 0.498850 8.2:+14486916 MS.gene62455:CDS
CATCATTGGGCCTGACCTCA+AGG 0.499353 8.2:+14485499 MS.gene62455:CDS
CGCATCTTCCGAATTTGGTA+GGG 0.504606 8.2:-14485407 None:intergenic
ACGCATCTTCCGAATTTGGT+AGG 0.508995 8.2:-14485408 None:intergenic
TGCAAACTCTTCAACGTAGG+TGG 0.512529 8.2:-14485883 None:intergenic
TTAGGAAAAGCTTAAATCGT+TGG 0.529258 8.2:-14485340 None:intergenic
TGGCAGAGTCGAACTCCAAA+CGG 0.540408 8.2:+14485081 MS.gene62455:CDS
TTGGTAAGGTTAAGATAGTG+AGG 0.542588 8.2:-14485961 None:intergenic
AGCTCCTTAATGCTCTCTCT+GGG 0.549116 8.2:+14486088 MS.gene62455:CDS
AAGAGTCGCCTTTATCAGGA+TGG 0.553310 8.2:+14486709 MS.gene62455:CDS
GCAGATGTTCAATAGATACA+TGG 0.554380 8.2:+14485468 MS.gene62455:CDS
TAAGTTATATAAAGTGCTAA+GGG 0.555537 8.2:+14486917 MS.gene62455:CDS
GCAAACTCTTCAACGTAGGT+GGG 0.556690 8.2:-14485882 None:intergenic
CGACATGGACCAAGATGACA+TGG 0.563661 8.2:+14485316 MS.gene62455:CDS
ATGATACAATTAGGAACACT+TGG 0.569360 8.2:-14486741 None:intergenic
TTATATAAAGTGCTAAGGGA+TGG 0.571621 8.2:+14486921 MS.gene62455:CDS
CTCATGTACAAAATCTCTCG+TGG 0.589169 8.2:+14485433 MS.gene62455:CDS
ATTTGCAAACTCTTCAACGT+AGG 0.595550 8.2:-14485886 None:intergenic
TGACATAGACCAAGACGACA+TGG 0.596420 8.2:+14485301 MS.gene62455:CDS
AAAGAATGATCACTCGAGGA+AGG 0.599289 8.2:-14486045 None:intergenic
TTCATCAGAAAAGTCGAGAA+CGG 0.605182 8.2:-14485249 None:intergenic
GATGTTGATATCGCTTCTGT+TGG 0.605436 8.2:+14485910 MS.gene62455:CDS
CAAGCATTCTATCTCGCAGA+TGG 0.608644 8.2:+14485204 MS.gene62455:CDS
CAGATGTTCAATAGATACAT+GGG 0.617815 8.2:+14485469 MS.gene62455:CDS
AGAGTCGCCTTTATCAGGAT+GGG 0.619421 8.2:+14486710 MS.gene62455:CDS
TGTGGCTCAGTATACAGTCT+GGG 0.619641 8.2:-14485145 None:intergenic
AGGTTAAGATAGTGAGGACA+AGG 0.625769 8.2:-14485955 None:intergenic
CCTCATACTCAACGATATTG+CGG 0.631863 8.2:+14485529 MS.gene62455:CDS
GGCCAAAGAATGATCACTCG+AGG 0.634076 8.2:-14486049 None:intergenic
GTTGGGTTGCTCAACAACAA+AGG 0.654398 8.2:+14486125 MS.gene62455:CDS
GTATGAGGTCAAGTTCCTTG+AGG 0.656163 8.2:-14485514 None:intergenic
GGTCAGGCCCAATGATGGAG+CGG 0.674038 8.2:-14485493 None:intergenic
TTGGAAGGAAAGACATGATG+TGG 0.683179 8.2:-14485163 None:intergenic
TTAAGATAGTGAGGACAAGG+CGG 0.728130 8.2:-14485952 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTTCACATCATTAAG+TGG - chr8.2:14486584-14486603 None:intergenic 20.0%
!! ATATATACCACAATTTACTA+AGG + chr8.2:14485737-14485756 MS.gene62455:intron 20.0%
!! CTTTAAACTGAATAAAAGTT+AGG - chr8.2:14486773-14486792 None:intergenic 20.0%
!! GTATAGTTTATTATCATAGT+TGG + chr8.2:14486147-14486166 MS.gene62455:intron 20.0%
!! TTTATCAGTCATTTACAATT+TGG - chr8.2:14486187-14486206 None:intergenic 20.0%
!!! ATAAGTTATATAAAGTGCTA+AGG + chr8.2:14486916-14486935 MS.gene62455:CDS 20.0%
!!! CTAACTTTTATTCAGTTTAA+AGG + chr8.2:14486771-14486790 MS.gene62455:CDS 20.0%
!!! GATTATTGATGATATTTCAT+TGG + chr8.2:14486866-14486885 MS.gene62455:CDS 20.0%
!!! GTTGAGTATATTTTGAAAAA+AGG + chr8.2:14486825-14486844 MS.gene62455:CDS 20.0%
!!! TAAGTTATATAAAGTGCTAA+GGG + chr8.2:14486917-14486936 MS.gene62455:CDS 20.0%
! AAGATGTAATCATGCATATA+TGG - chr8.2:14486657-14486676 None:intergenic 25.0%
! AATGAAATAGATTACACAAG+AGG + chr8.2:14486618-14486637 MS.gene62455:intron 25.0%
! ATTACATCTTATGTATGTTG+TGG + chr8.2:14486667-14486686 MS.gene62455:intron 25.0%
! ATTCAGTTTAAAGGATATCA+AGG + chr8.2:14486780-14486799 MS.gene62455:CDS 25.0%
! GAATACTTACCTTTATTATG+AGG + chr8.2:14485840-14485859 MS.gene62455:intron 25.0%
! GTCAAATTTGTCAAATTCAA+AGG - chr8.2:14485276-14485295 None:intergenic 25.0%
! TGAGTTCCAAATGAATTAAA+TGG - chr8.2:14486435-14486454 None:intergenic 25.0%
!! ATTCTGCCATTTAATTCATT+TGG + chr8.2:14486426-14486445 MS.gene62455:intron 25.0%
AACCTTACCAAAATCAGATT+CGG + chr8.2:14485973-14485992 MS.gene62455:CDS 30.0%
AGGTGTGATATGATACAATT+AGG - chr8.2:14486753-14486772 None:intergenic 30.0%
ATATCACTAACAATAGTCCT+AGG + chr8.2:14486269-14486288 MS.gene62455:intron 30.0%
ATGATACAATTAGGAACACT+TGG - chr8.2:14486744-14486763 None:intergenic 30.0%
ATTAACATGTAGTTCAGTCT+TGG + chr8.2:14485705-14485724 MS.gene62455:intron 30.0%
CAGATGTTCAATAGATACAT+GGG + chr8.2:14485469-14485488 MS.gene62455:CDS 30.0%
GAGCTTGAATAAACATTTGA+AGG - chr8.2:14486073-14486092 None:intergenic 30.0%
GCATATATGGTAATAAATCG+AGG - chr8.2:14486644-14486663 None:intergenic 30.0%
GGACTATTGTTAGTGATATT+AGG - chr8.2:14486268-14486287 None:intergenic 30.0%
TATACCACAATTTACTAAGG+TGG + chr8.2:14485740-14485759 MS.gene62455:intron 30.0%
TCAACAAATAATAGCTCATC+TGG - chr8.2:14486810-14486829 None:intergenic 30.0%
TCAATAAACCCTACCAAATT+CGG + chr8.2:14485399-14485418 MS.gene62455:CDS 30.0%
TCTCATAATTCAAAATGACC+AGG + chr8.2:14486509-14486528 MS.gene62455:intron 30.0%
TGAATTAAATGGCAGAATTC+TGG - chr8.2:14486424-14486443 None:intergenic 30.0%
TTACAAAAAGGCAAAAGGTT+AGG - chr8.2:14485361-14485380 None:intergenic 30.0%
TTAGGAAAAGCTTAAATCGT+TGG - chr8.2:14485343-14485362 None:intergenic 30.0%
! ACCTTTTGCCTTTTTGTAAA+CGG + chr8.2:14485362-14485381 MS.gene62455:CDS 30.0%
! GGTAAGTATTCAGATTTTCT+AGG - chr8.2:14485831-14485850 None:intergenic 30.0%
! GTTAGTGATATTAGGTATTG+CGG - chr8.2:14486260-14486279 None:intergenic 30.0%
! TTAGTGATATTAGGTATTGC+GGG - chr8.2:14486259-14486278 None:intergenic 30.0%
! TTATATAAAGTGCTAAGGGA+TGG + chr8.2:14486921-14486940 MS.gene62455:CDS 30.0%
!! AGAAAATTTGAGTTGAACCA+CGG - chr8.2:14486463-14486482 None:intergenic 30.0%
AAAACACGCCGTTTACAAAA+AGG - chr8.2:14485373-14485392 None:intergenic 35.0%
AGTTTCAACTTCTTCAGTGA+TGG - chr8.2:14485777-14485796 None:intergenic 35.0%
ATCCTTTACTCTACTATCCT+AGG - chr8.2:14486289-14486308 None:intergenic 35.0%
ATTTGCAAACTCTTCAACGT+AGG - chr8.2:14485889-14485908 None:intergenic 35.0%
GCAGATGTTCAATAGATACA+TGG + chr8.2:14485468-14485487 MS.gene62455:CDS 35.0%
GGGATAAAACATCTATCGTT+GGG + chr8.2:14486108-14486127 MS.gene62455:CDS 35.0%
TGAACCACCTTAGTAAATTG+TGG - chr8.2:14485747-14485766 None:intergenic 35.0%
TGGCGTAATCCTCATAATAA+AGG - chr8.2:14485852-14485871 None:intergenic 35.0%
TGGGATAAAACATCTATCGT+TGG + chr8.2:14486107-14486126 MS.gene62455:CDS 35.0%
TTCATCAGAAAAGTCGAGAA+CGG - chr8.2:14485252-14485271 None:intergenic 35.0%
TTGGTAAGGTTAAGATAGTG+AGG - chr8.2:14485964-14485983 None:intergenic 35.0%
! GAGCTCTAATGTTTGTTCAA+TGG + chr8.2:14486538-14486557 MS.gene62455:intron 35.0%
!! ATTTCAGCCATTTTCATACC+AGG - chr8.2:14485801-14485820 None:intergenic 35.0%
!! TTTCAGCCATTTTCATACCA+GGG - chr8.2:14485800-14485819 None:intergenic 35.0%
AAAGAATGATCACTCGAGGA+AGG - chr8.2:14486048-14486067 None:intergenic 40.0%
AACATGTAGTTCAGTCTTGG+TGG + chr8.2:14485708-14485727 MS.gene62455:intron 40.0%
ACATTAGAGCTCATCAAACC+TGG - chr8.2:14486530-14486549 None:intergenic 40.0%
AGGTTAAGATAGTGAGGACA+AGG - chr8.2:14485958-14485977 None:intergenic 40.0%
CAGCTCAAGAACAAGAAGAT+AGG + chr8.2:14485111-14485130 MS.gene62455:CDS 40.0%
CCTCATACTCAACGATATTG+CGG + chr8.2:14485529-14485548 MS.gene62455:CDS 40.0%
CGTAGGTGGGAAACAAATAT+TGG - chr8.2:14485872-14485891 None:intergenic 40.0%
CTCATGTACAAAATCTCTCG+TGG + chr8.2:14485433-14485452 MS.gene62455:CDS 40.0%
CTGGAAAATGTAGATCAGCA+GGG - chr8.2:14486405-14486424 None:intergenic 40.0%
GAAACTCCCTGGTATGAAAA+TGG + chr8.2:14485791-14485810 MS.gene62455:intron 40.0%
GAATGTCGCACTTCTTACTT+AGG - chr8.2:14486893-14486912 None:intergenic 40.0%
GATGTTGATATCGCTTCTGT+TGG + chr8.2:14485910-14485929 MS.gene62455:CDS 40.0%
GCCGTTTACAAAAAGGCAAA+AGG - chr8.2:14485366-14485385 None:intergenic 40.0%
GTCCTAGGATAGTAGAGTAA+AGG + chr8.2:14486284-14486303 MS.gene62455:intron 40.0%
TCGTTGTTGTCAACAAACAG+TGG + chr8.2:14486368-14486387 MS.gene62455:intron 40.0%
TCTGGAAAATGTAGATCAGC+AGG - chr8.2:14486406-14486425 None:intergenic 40.0%
TTAAGATAGTGAGGACAAGG+CGG - chr8.2:14485955-14485974 None:intergenic 40.0%
TTCCTCGAGTGATCATTCTT+TGG + chr8.2:14486047-14486066 MS.gene62455:CDS 40.0%
TTGGAAGGAAAGACATGATG+TGG - chr8.2:14485166-14485185 None:intergenic 40.0%
! AACGTCACCGAATCTGATTT+TGG - chr8.2:14485983-14486002 None:intergenic 40.0%
! ATTTGGAACTCATTCTTCCG+TGG + chr8.2:14486443-14486462 MS.gene62455:intron 40.0%
! GCTTGTTTCAACAGAGCTTT+TGG - chr8.2:14485189-14485208 None:intergenic 40.0%
! GTTTCAACAGAGCTTTTGGT+TGG - chr8.2:14485185-14485204 None:intergenic 40.0%
!! CACCGAATCTGATTTTGGTA+AGG - chr8.2:14485978-14485997 None:intergenic 40.0%
!! TTATCCCAGAGAGAGCATTA+AGG - chr8.2:14486095-14486114 None:intergenic 40.0%
AAGAGTCGCCTTTATCAGGA+TGG + chr8.2:14486709-14486728 MS.gene62455:CDS 45.0%
AAGCTCCTTAATGCTCTCTC+TGG + chr8.2:14486087-14486106 MS.gene62455:CDS 45.0%
ACGCATCTTCCGAATTTGGT+AGG - chr8.2:14485411-14485430 None:intergenic 45.0%
AGAGACGCATCTTCCGAATT+TGG - chr8.2:14485415-14485434 None:intergenic 45.0%
AGAGTCGCCTTTATCAGGAT+GGG + chr8.2:14486710-14486729 MS.gene62455:CDS 45.0%
AGCTCCTTAATGCTCTCTCT+GGG + chr8.2:14486088-14486107 MS.gene62455:CDS 45.0%
ATCGTTGGTCCATGTCATCT+TGG - chr8.2:14485328-14485347 None:intergenic 45.0%
ATGTGGCTCAGTATACAGTC+TGG - chr8.2:14485149-14485168 None:intergenic 45.0%
CAAGCATTCTATCTCGCAGA+TGG + chr8.2:14485204-14485223 MS.gene62455:CDS 45.0%
CCGCAATATCGTTGAGTATG+AGG - chr8.2:14485532-14485551 None:intergenic 45.0%
CGCATCTTCCGAATTTGGTA+GGG - chr8.2:14485410-14485429 None:intergenic 45.0%
CTGAAGAAGTTGAAACTCCC+TGG + chr8.2:14485780-14485799 MS.gene62455:intron 45.0%
GCAAACTCTTCAACGTAGGT+GGG - chr8.2:14485885-14485904 None:intergenic 45.0%
GTATGAGGTCAAGTTCCTTG+AGG - chr8.2:14485517-14485536 None:intergenic 45.0%
GTCAACAAACAGTGGCTTCT+GGG + chr8.2:14486376-14486395 MS.gene62455:intron 45.0%
TGACATAGACCAAGACGACA+TGG + chr8.2:14485301-14485320 MS.gene62455:CDS 45.0%
TGCAAACTCTTCAACGTAGG+TGG - chr8.2:14485886-14485905 None:intergenic 45.0%
TGCTTTAGTGCAAGCAGAGA+GGG - chr8.2:14485582-14485601 None:intergenic 45.0%
TGTCAACAAACAGTGGCTTC+TGG + chr8.2:14486375-14486394 MS.gene62455:intron 45.0%
TGTGGCTCAGTATACAGTCT+GGG - chr8.2:14485148-14485167 None:intergenic 45.0%
TGTGTAGCCCATCCTGATAA+AGG - chr8.2:14486720-14486739 None:intergenic 45.0%
TTGCTTTAGTGCAAGCAGAG+AGG - chr8.2:14485583-14485602 None:intergenic 45.0%
! GTTGGGTTGCTCAACAACAA+AGG + chr8.2:14486125-14486144 MS.gene62455:CDS 45.0%
! TTGAGCTGCATTTTGCCGTT+TGG - chr8.2:14485099-14485118 None:intergenic 45.0%
!! CAACAGAGCTTTTGGTTGGA+AGG - chr8.2:14485181-14485200 None:intergenic 45.0%
AGGTCAAGTTCCTTGAGGTC+AGG - chr8.2:14485512-14485531 None:intergenic 50.0%
CAGGAAGAGTCGCCTTTATC+AGG + chr8.2:14486705-14486724 MS.gene62455:intron 50.0%
CATCTTGGTCCATGTCGTCT+TGG - chr8.2:14485313-14485332 None:intergenic 50.0%
CGACATGGACCAAGATGACA+TGG + chr8.2:14485316-14485335 MS.gene62455:CDS 50.0%
GGCCAAAGAATGATCACTCG+AGG - chr8.2:14486052-14486071 None:intergenic 50.0%
TGGCAGAGTCGAACTCCAAA+CGG + chr8.2:14485081-14485100 MS.gene62455:CDS 50.0%
TTTAGTGCAAGCAGAGAGGG+CGG - chr8.2:14485579-14485598 None:intergenic 50.0%
ACATGGGTCCGCTCCATCAT+TGG + chr8.2:14485485-14485504 MS.gene62455:CDS 55.0%
CATCATTGGGCCTGACCTCA+AGG + chr8.2:14485499-14485518 MS.gene62455:CDS 55.0%
CATGGGTCCGCTCCATCATT+GGG + chr8.2:14485486-14485505 MS.gene62455:CDS 55.0%
CTCGCAGATGGTGCAACGTT+TGG + chr8.2:14485216-14485235 MS.gene62455:CDS 55.0%
CTTGAGGTCAGGCCCAATGA+TGG - chr8.2:14485501-14485520 None:intergenic 55.0%
GTGGTGTCTTTCGTCATCGC+AGG + chr8.2:14486686-14486705 MS.gene62455:intron 55.0%
! GGTCAGGCCCAATGATGGAG+CGG - chr8.2:14485496-14485515 None:intergenic 60.0%
CAGAGAGGGCGGTAGGCATG+TGG - chr8.2:14485568-14485587 None:intergenic 65.0%
GTGCAAGCAGAGAGGGCGGT+AGG - chr8.2:14485575-14485594 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 14485080 14486968 14485080 ID=MS.gene62455
chr8.2 mRNA 14485080 14486968 14485080 ID=MS.gene62455.t1;Parent=MS.gene62455
chr8.2 exon 14485080 14485550 14485080 ID=MS.gene62455.t1.exon1;Parent=MS.gene62455.t1
chr8.2 CDS 14485080 14485550 14485080 ID=cds.MS.gene62455.t1;Parent=MS.gene62455.t1
chr8.2 exon 14485862 14486146 14485862 ID=MS.gene62455.t1.exon2;Parent=MS.gene62455.t1
chr8.2 CDS 14485862 14486146 14485862 ID=cds.MS.gene62455.t1;Parent=MS.gene62455.t1
chr8.2 exon 14486708 14486968 14486708 ID=MS.gene62455.t1.exon3;Parent=MS.gene62455.t1
chr8.2 CDS 14486708 14486968 14486708 ID=cds.MS.gene62455.t1;Parent=MS.gene62455.t1
Gene Sequence

>MS.gene62455

ATGGCAGAGTCGAACTCCAAACGGCAAAATGCAGCTCAAGAACAAGAAGATAGGATCAGTAGTCTCCCAGACTGTATACTGAGCCACATCATGTCTTTCCTTCCAACCAAAAGCTCTGTTGAAACAAGCATTCTATCTCGCAGATGGTGCAACGTTTGGAAAGACGTCTCCGTTCTCGACTTTTCTGATGAATCCTTTGAATTTGACAAATTTGACGATGATGACATAGACCAAGACGACATGGACCAAGATGACATGGACCAACGATTTAAGCTTTTCCTAACCTTTTGCCTTTTTGTAAACGGCGTGTTTTCTTCTCTCAATAAACCCTACCAAATTCGGAAGATGCGTCTCTCATGTACAAAATCTCTCGTGGACAACAAATTCTGCAGATGTTCAATAGATACATGGGTCCGCTCCATCATTGGGCCTGACCTCAAGGAACTTGACCTCATACTCAACGATATTGCGGTATTTTTCAGCTACCACATGCCTACCGCCCTCTCTGCTTGCACTAAAGCAAATTCAAGTCATTTTTTATAGTAGTATTTTGTTTTTTAATTATTATTAAAATCACGTATATTGCTACTCTTATGTGACATGACACGATGATAACATACTAACAATTAACATGTAGTTCAGTCTTGGTGGTGATATATATATACCACAATTTACTAAGGTGGTTCATTGTTTACCATCACTGAAGAAGTTGAAACTCCCTGGTATGAAAATGGCTGAAATGAATTATCCTAGAAAATCTGAATACTTACCTTTATTATGAGGATTACGCCAATATTTGTTTCCCACCTACGTTGAAGAGTTTGCAAATCGATGTTGATATCGCTTCTGTTGGTGCTTTCTTGTATGACAATCCGCCTTGTCCTCACTATCTTAACCTTACCAAAATCAGATTCGGTGACGTTAGCAACTTACAAAACGTGATGAGAGCGTCTCTTGATGTTTTTCCTTCCTCGAGTGATCATTCTTTGGCCTTCAAATGTTTATTCAAGCTCCTTAATGCTCTCTCTGGGATAAAACATCTATCGTTGGGTTGCTCAACAACAAAGGTATAGTTTATTATCATAGTTGGATATAGATATGATACCAAATTGTAAATGACTGATAAAATGATAAAATGCGTACACACATATATACAAGTCTTAGAATACAATCAATCCCGCAATACCTAATATCACTAACAATAGTCCTAGGATAGTAGAGTAAAGGATGTGTACATTTTACACACATATTAGCTTTCTAATTACAAGCTAATATTACGTCTTACTACTCGTTGTTGTCAACAAACAGTGGCTTCTGGGTGACCCTGCTGATCTACATTTTCCAGAATTCTGCCATTTAATTCATTTGGAACTCATTCTTCCGTGGTTCAACTCAAATTTTCTGTTGAGTCTGCTTCAGACATGTAAGTTCTCATAATTCAAAATGACCAGGTTTGATGAGCTCTAATGTTTGTTCAATGGTTTATCTTGCTTCACGAACACCACTTAATGATGTGAAATTTATCAATTCAATGTTTTAATGAAATAGATTACACAAGAGGCCTCGATTTATTACCATATATGCATGATTACATCTTATGTATGTTGTGGTGTCTTTCGTCATCGCAGGAAGAGTCGCCTTTATCAGGATGGGCTACACAACCAAGTGTTCCTAATTGTATCATATCACACCTAACTTTTATTCAGTTTAAAGGATATCAAGGACTTCCAGATGAGCTATTATTTGTTGAGTATATTTTGAAAAAAGGACTTGTTTTGAAGACAATGATTATTGATGATATTTCATTGGACCTAAGTAAGAAGTGCGACATTCTCAATAAGTTATATAAAGTGCTAAGGGATGGAATTCGCCAACTTATATTTGACTGA
Protein sequence

>MS.gene62455.t1

MAESNSKRQNAAQEQEDRISSLPDCILSHIMSFLPTKSSVETSILSRRWCNVWKDVSVLDFSDESFEFDKFDDDDIDQDDMDQDDMDQRFKLFLTFCLFVNGVFSSLNKPYQIRKMRLSCTKSLVDNKFCRCSIDTWVRSIIGPDLKELDLILNDIADYANICFPPTLKSLQIDVDIASVGAFLYDNPPCPHYLNLTKIRFGDVSNLQNVMRASLDVFPSSSDHSLAFKCLFKLLNALSGIKHLSLGCSTTKEESPLSGWATQPSVPNCIISHLTFIQFKGYQGLPDELLFVEYILKKGLVLKTMIIDDISLDLSKKCDILNKLYKVLRDGIRQLIFD