AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64737

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64737.t1 MTR_8g445780 72.727 220 60 0 1 220 171 390 4.83e-117 341
MS.gene64737.t1 MTR_8g014210 68.831 231 72 0 36 266 1 231 2.98e-114 328
MS.gene64737.t1 MTR_8g014260 63.806 268 95 2 1 266 184 451 1.87e-112 331
MS.gene64737.t1 MTR_4g024710 61.194 268 102 2 1 266 80 347 6.67e-110 321
MS.gene64737.t1 MTR_4g024745 61.753 251 94 2 1 249 34 284 4.43e-100 294
MS.gene64737.t1 MTR_2g083840 51.838 272 123 4 2 266 187 457 1.57e-80 249
MS.gene64737.t1 MTR_8g062270 47.253 273 129 6 3 265 186 453 8.99e-70 222
MS.gene64737.t1 MTR_8g468810 49.097 277 126 9 2 266 190 463 1.92e-68 219
MS.gene64737.t1 MTR_8g058970 49.821 279 124 7 2 266 201 477 3.16e-68 218
MS.gene64737.t1 MTR_5g092960 48.162 272 123 6 9 265 193 461 2.72e-66 213
MS.gene64737.t1 MTR_8g077460 47.471 257 118 5 17 266 129 375 4.70e-66 210
MS.gene64737.t1 MTR_8g077460 63.462 52 19 0 2 53 178 229 5.01e-13 68.6
MS.gene64737.t1 MTR_8g468840 45.736 258 130 6 14 264 194 448 7.22e-58 191
MS.gene64737.t1 MTR_8g467800 42.199 282 141 9 3 266 176 453 7.70e-56 186
MS.gene64737.t1 MTR_8g468760 44.569 267 105 6 9 265 185 418 2.30e-53 178
MS.gene64737.t1 MTR_4g032730 40.636 283 134 7 10 265 191 466 8.02e-50 170
MS.gene64737.t1 MTR_8g014160 38.148 270 108 4 2 266 210 425 8.34e-46 159
MS.gene64737.t1 MTR_8g469020 38.931 262 150 8 11 266 194 451 4.78e-43 152
MS.gene64737.t1 MTR_8g058965 40.741 270 147 9 5 266 192 456 1.08e-42 151
MS.gene64737.t1 MTR_8g468810 49.462 186 86 5 2 181 190 373 4.63e-41 145
MS.gene64737.t1 MTR_8g062310 37.079 267 149 7 4 266 177 428 8.53e-40 143
MS.gene64737.t1 MTR_8g062010 37.091 275 151 10 1 266 169 430 9.89e-40 143
MS.gene64737.t1 MTR_8g070950 36.232 276 148 8 4 266 174 434 1.10e-39 143
MS.gene64737.t1 MTR_8g062080 36.364 275 148 10 4 266 186 445 7.19e-39 141
MS.gene64737.t1 MTR_5g092960 49.444 180 81 3 9 179 193 371 2.05e-38 139
MS.gene64737.t1 MTR_8g014230 66.667 78 26 0 179 256 18 95 8.86e-31 110
MS.gene64737.t1 MTR_4g050250 38.136 236 118 8 1 212 188 419 3.58e-29 114
MS.gene64737.t1 MTR_2g086020 48.092 131 65 3 139 266 185 315 3.79e-29 112
MS.gene64737.t1 MTR_8g062300 30.903 288 166 8 1 266 201 477 6.02e-29 114
MS.gene64737.t1 MTR_8g468810 50.413 121 59 1 2 122 190 309 3.04e-26 105
MS.gene64737.t1 MTR_8g468810 50.413 121 59 1 2 122 190 309 3.45e-26 105
MS.gene64737.t1 MTR_8g468810 50.413 121 59 1 2 122 190 309 3.75e-26 105
MS.gene64737.t1 MTR_5g084070 30.233 258 165 9 9 258 169 419 1.33e-18 85.1
MS.gene64737.t1 MTR_8g467800 42.963 135 67 5 3 128 176 309 9.48e-17 79.0
MS.gene64737.t1 MTR_7g098510 29.565 230 129 8 55 266 177 391 2.12e-15 75.5
MS.gene64737.t1 MTR_5g008950 30.508 236 123 9 62 266 140 365 5.26e-15 74.3
MS.gene64737.t1 MTR_8g467790 32.353 204 100 9 10 208 320 490 2.70e-14 72.8
MS.gene64737.t1 MTR_1g041245 39.286 112 63 2 160 266 275 386 9.53e-14 70.9
MS.gene64737.t1 MTR_5g080710 30.222 225 143 8 17 234 203 420 1.45e-13 70.5
MS.gene64737.t1 MTR_3g115430 38.532 109 62 3 160 266 20 125 1.96e-13 65.9
MS.gene64737.t1 MTR_7g032380 32.727 110 71 1 160 266 247 356 4.11e-13 68.6
MS.gene64737.t1 MTR_7g098570 29.954 217 118 8 62 262 191 389 3.21e-12 66.6
MS.gene64737.t1 MTR_7g033915 28.877 187 110 4 85 265 195 364 4.33e-12 65.9
MS.gene64737.t1 MTR_7g032370 33.636 110 70 1 160 266 243 352 6.18e-12 65.1
MS.gene64737.t1 MTR_7g098480 27.778 198 120 5 74 265 208 388 1.25e-11 64.7
MS.gene64737.t1 MTR_3g108560 28.947 190 111 5 85 265 214 388 8.67e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64737.t1 AT4G26340 29.044 272 172 7 5 266 159 419 4.84e-23 97.8
MS.gene64737.t1 AT5G38570 28.030 264 171 9 8 265 125 375 7.16e-18 82.8
MS.gene64737.t1 AT5G56420 26.812 276 176 11 3 266 161 422 4.04e-17 80.9
MS.gene64737.t1 AT5G56420 26.812 276 176 11 3 266 161 422 4.04e-17 80.9
MS.gene64737.t1 AT5G56420 26.812 276 176 11 3 266 161 422 4.04e-17 80.9
MS.gene64737.t1 AT4G26350 26.335 281 175 9 6 266 160 428 1.07e-15 76.6
MS.gene64737.t1 AT3G26920 27.372 274 172 10 6 265 79 339 2.64e-14 72.0
MS.gene64737.t1 AT3G26920 27.372 274 172 10 6 265 79 339 2.64e-14 72.0
MS.gene64737.t1 AT5G56452 27.347 245 146 8 34 266 3 227 4.80e-14 70.1
MS.gene64737.t1 AT4G00160 28.975 283 165 14 6 266 176 444 4.97e-14 71.6
MS.gene64737.t1 AT5G56800 26.786 280 168 14 3 265 84 343 1.00e-13 70.5
MS.gene64737.t1 AT5G56325 27.444 266 167 9 15 266 11 264 1.15e-13 69.3
MS.gene64737.t1 AT5G56390 27.341 267 164 10 14 265 173 424 1.57e-13 70.1
MS.gene64737.t1 AT3G52680 29.032 279 169 13 6 266 180 447 1.75e-13 70.1
MS.gene64737.t1 AT1G32375 27.232 224 138 8 51 266 216 422 2.62e-13 69.7
MS.gene64737.t1 AT1G32375 27.232 224 138 8 51 266 216 422 2.62e-13 69.7
MS.gene64737.t1 AT5G56452 26.971 241 151 9 34 266 3 226 3.69e-13 67.4
MS.gene64737.t1 AT4G10420 26.545 275 176 11 1 265 63 321 6.25e-13 68.2
MS.gene64737.t1 AT5G56370 25.448 279 168 11 8 265 161 420 1.29e-12 67.4
MS.gene64737.t1 AT5G56370 25.448 279 168 11 8 265 161 420 1.29e-12 67.4
MS.gene64737.t1 AT3G50710 29.078 282 167 12 3 266 161 427 4.16e-12 66.2
MS.gene64737.t1 AT5G56820 26.715 277 169 8 3 263 165 423 5.32e-12 65.9
MS.gene64737.t1 AT3G53550 26.210 248 139 8 26 265 29 240 1.01e-11 63.9
MS.gene64737.t1 AT5G56400 28.194 227 130 12 55 266 247 455 1.72e-11 64.3
MS.gene64737.t1 AT3G54910 27.488 211 130 8 62 266 180 373 1.83e-11 63.9
MS.gene64737.t1 AT3G54910 27.488 211 130 8 62 266 180 373 1.83e-11 63.9
MS.gene64737.t1 AT3G54910 27.488 211 130 8 62 266 180 373 1.83e-11 63.9
MS.gene64737.t1 AT3G26930 26.573 286 172 12 6 266 171 443 9.61e-11 62.0
MS.gene64737.t1 AT3G26930 26.573 286 172 12 6 266 126 398 9.82e-11 62.0

Find 61 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGCTTTATTGAATTTAA+AGG 0.137200 5.2:+12706030 MS.gene64737:CDS
CTGCTCAAATCTAGAAATTC+TGG 0.245669 5.2:+12705159 MS.gene64737:CDS
AACCTCTTTGGCGCTCTCTA+TGG 0.247361 5.2:+12705424 MS.gene64737:CDS
ATGTGATTTGGGTAATATTA+AGG 0.247933 5.2:-12705306 None:intergenic
TCTGTGAATGCACTTCTTGA+TGG 0.277751 5.2:+12705136 MS.gene64737:CDS
GTCCCTTTGCACAACCTCTT+TGG 0.292189 5.2:+12705412 MS.gene64737:CDS
AACCTTCGCCGAATGTGATT+TGG 0.296864 5.2:-12705318 None:intergenic
CGCAAAGTTTATCCAAGCTT+TGG 0.298408 5.2:-12705198 None:intergenic
ACCTTCGCCGAATGTGATTT+GGG 0.356533 5.2:-12705317 None:intergenic
AGGTGGGATACGAGACAATT+AGG 0.358859 5.2:-12706009 None:intergenic
TGTGGAGACCATGCTAAAAT+TGG 0.366224 5.2:-12705976 None:intergenic
GCAAAGTTTATCCAAGCTTT+GGG 0.387401 5.2:-12705197 None:intergenic
GAATGATGTTGGGGCTTACT+TGG 0.419052 5.2:+12705258 MS.gene64737:CDS
GATTATTGCTGATATTTCCT+TGG 0.419235 5.2:+12706125 MS.gene64737:CDS
GCCTTGAGCTCGTTCTTCCC+TGG 0.433432 5.2:+12705718 MS.gene64737:CDS
GCGTCCCGCCTTCCGTGAAA+AGG 0.441870 5.2:+12705218 MS.gene64737:CDS
CGCCAAAGAGGTTGTGCAAA+GGG 0.453204 5.2:-12705414 None:intergenic
ACCTCTTTGGCGCTCTCTAT+GGG 0.453922 5.2:+12705425 MS.gene64737:CDS
AATATTACCCAAATCACATT+CGG 0.467774 5.2:+12705310 MS.gene64737:CDS
TCACCATTGAGAATGATGTT+GGG 0.472402 5.2:+12705248 MS.gene64737:CDS
ATTGAATTTAAAGGATTTCG+AGG 0.478575 5.2:+12706039 MS.gene64737:CDS
ATCACCATTGAGAATGATGT+TGG 0.479824 5.2:+12705247 MS.gene64737:CDS
TGGCACATTGCAGAGGCCCT+TGG 0.485254 5.2:-12706192 None:intergenic
TCAACAAATGAAACCTCGTC+TGG 0.487781 5.2:-12706066 None:intergenic
GATGTGTTTCCCACATCACT+TGG 0.489431 5.2:+12705382 MS.gene64737:CDS
AGATACGCTTCCACCACATT+GGG 0.491396 5.2:-12705358 None:intergenic
CATTCTGAATCATGAGAGCT+TGG 0.502108 5.2:-12705788 None:intergenic
ATCATGAGAGCTTGGAGCAA+GGG 0.502298 5.2:-12705780 None:intergenic
CTTTAAATTCAATAAAGCTC+AGG 0.504473 5.2:-12706029 None:intergenic
ATATTAAGGTATTGAAGATC+CGG 0.505075 5.2:-12705292 None:intergenic
GATGATCAACATTGGTTATG+TGG 0.506783 5.2:+12705105 MS.gene64737:CDS
ACGAGACAATTAGGAATACT+TGG 0.508674 5.2:-12706000 None:intergenic
TAAATTCAATAAAGCTCAGG+TGG 0.522332 5.2:-12706026 None:intergenic
AAGATACGCTTCCACCACAT+TGG 0.536393 5.2:-12705359 None:intergenic
ACCCAAATCACATTCGGCGA+AGG 0.544081 5.2:+12705316 MS.gene64737:CDS
CACCATTGAGAATGATGTTG+GGG 0.556110 5.2:+12705249 MS.gene64737:CDS
CAGTTCAATCAAATTTCAGT+TGG 0.556452 5.2:-12706212 None:intergenic
AGCCCCAACATCATTCTCAA+TGG 0.559977 5.2:-12705251 None:intergenic
CAATTAGGAATACTTGGCTG+TGG 0.563777 5.2:-12705994 None:intergenic
GACGATGGAACCAAGTGATG+TGG 0.565688 5.2:-12705392 None:intergenic
AATCATGAGAGCTTGGAGCA+AGG 0.579140 5.2:-12705781 None:intergenic
ACCAGGGAAGAACGAGCTCA+AGG 0.581952 5.2:-12705719 None:intergenic
AAGAGAATGTGAGTTAAACC+AGG 0.583685 5.2:-12705736 None:intergenic
AGTTATTATCTGATGTGCCA+AGG 0.585159 5.2:+12706175 MS.gene64737:CDS
TTTCAGTTGGCACATTGCAG+AGG 0.594810 5.2:-12706199 None:intergenic
GCGCCAAAGAGGTTGTGCAA+AGG 0.598386 5.2:-12705415 None:intergenic
GTGTCCAAACAGTGGCTGCT+TGG 0.603251 5.2:+12705651 MS.gene64737:intron
TCCCATAGAGAGCGCCAAAG+AGG 0.610065 5.2:-12705426 None:intergenic
GTTATTATCTGATGTGCCAA+GGG 0.612609 5.2:+12706176 MS.gene64737:CDS
AGGGACATTTCTGAATCAAG+TGG 0.617766 5.2:-12705761 None:intergenic
AAGATGTTGATGATCAACAT+TGG 0.618238 5.2:+12705097 None:intergenic
ACGATGGAACCAAGTGATGT+GGG 0.620386 5.2:-12705391 None:intergenic
TTACTTGGAAGTAAATGCAC+CGG 0.621805 5.2:+12705273 MS.gene64737:CDS
GAGGTTGTGCAAAGGGACGA+TGG 0.633691 5.2:-12705407 None:intergenic
AAATTCAATAAAGCTCAGGT+GGG 0.637474 5.2:-12706025 None:intergenic
GTTGAGTCGTTCAACAACCA+AGG 0.649460 5.2:+12705462 MS.gene64737:CDS
AGAGAATGTGAGTTAAACCA+GGG 0.661025 5.2:-12705735 None:intergenic
GTACAACTTGCCCAATGTGG+TGG 0.661456 5.2:+12705348 MS.gene64737:CDS
TCTCATGATTCAGAATGACA+AGG 0.672143 5.2:+12705794 MS.gene64737:CDS
CTTGTACAACTTGCCCAATG+TGG 0.684396 5.2:+12705345 MS.gene64737:CDS
ATTTCGAGGATTTCCAGACG+AGG 0.686849 5.2:+12706053 MS.gene64737:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATTTATTATTATTAGTT+AGG - chr5.2:12705546-12705565 None:intergenic 10.0%
!! AACTCTATATATAAATGATG+AGG - chr5.2:12705519-12705538 None:intergenic 20.0%
! AATATTACCCAAATCACATT+CGG + chr5.2:12705310-12705329 MS.gene64737:CDS 25.0%
! ATTGAATTTAAAGGATTTCG+AGG + chr5.2:12706039-12706058 MS.gene64737:CDS 25.0%
! CATTTAATCCAAGCTTAATT+TGG + chr5.2:12705820-12705839 MS.gene64737:intron 25.0%
! CTAAAGAAAAAACTTAACCT+TGG - chr5.2:12705482-12705501 None:intergenic 25.0%
! CTTTAAATTCAATAAAGCTC+AGG - chr5.2:12706032-12706051 None:intergenic 25.0%
! TTAATAGACCAAATTAAGCT+TGG - chr5.2:12705831-12705850 None:intergenic 25.0%
!! ATGTGATTTGGGTAATATTA+AGG - chr5.2:12705309-12705328 None:intergenic 25.0%
!!! ATATTAAGGTATTGAAGATC+CGG - chr5.2:12705295-12705314 None:intergenic 25.0%
!!! CTGAGCTTTATTGAATTTAA+AGG + chr5.2:12706030-12706049 MS.gene64737:CDS 25.0%
!!! GAATGAAGTACTTCTTTTTT+AGG - chr5.2:12706152-12706171 None:intergenic 25.0%
AAATTCAATAAAGCTCAGGT+GGG - chr5.2:12706028-12706047 None:intergenic 30.0%
GATTATTGCTGATATTTCCT+TGG + chr5.2:12706125-12706144 MS.gene64737:CDS 30.0%
TAAATTCAATAAAGCTCAGG+TGG - chr5.2:12706029-12706048 None:intergenic 30.0%
! GTTGAGTATGTTTTGCAAAA+AGG + chr5.2:12706084-12706103 MS.gene64737:CDS 30.0%
!! ATTCTTGAAAAAGCATCTCA+TGG - chr5.2:12705683-12705702 None:intergenic 30.0%
!! TTCTTGAAAAAGCATCTCAT+GGG - chr5.2:12705682-12705701 None:intergenic 30.0%
AAGAGAATGTGAGTTAAACC+AGG - chr5.2:12705739-12705758 None:intergenic 35.0%
ACGAGACAATTAGGAATACT+TGG - chr5.2:12706003-12706022 None:intergenic 35.0%
AGAGAATGTGAGTTAAACCA+GGG - chr5.2:12705738-12705757 None:intergenic 35.0%
AGTTATTATCTGATGTGCCA+AGG + chr5.2:12706175-12706194 MS.gene64737:CDS 35.0%
ATCACCATTGAGAATGATGT+TGG + chr5.2:12705247-12705266 MS.gene64737:CDS 35.0%
CTGCTCAAATCTAGAAATTC+TGG + chr5.2:12705159-12705178 MS.gene64737:CDS 35.0%
GCAAAGTTTATCCAAGCTTT+GGG - chr5.2:12705200-12705219 None:intergenic 35.0%
GTTATTATCTGATGTGCCAA+GGG + chr5.2:12706176-12706195 MS.gene64737:CDS 35.0%
TCACCATTGAGAATGATGTT+GGG + chr5.2:12705248-12705267 MS.gene64737:CDS 35.0%
TCTCATGATTCAGAATGACA+AGG + chr5.2:12705794-12705813 MS.gene64737:CDS 35.0%
TTACTTGGAAGTAAATGCAC+CGG + chr5.2:12705273-12705292 MS.gene64737:CDS 35.0%
! ATTTTCAACCTTTTCACGGA+AGG - chr5.2:12705229-12705248 None:intergenic 35.0%
! GATGATCAACATTGGTTATG+TGG + chr5.2:12705105-12705124 MS.gene64737:CDS 35.0%
! GGTGATTTTCAACCTTTTCA+CGG - chr5.2:12705233-12705252 None:intergenic 35.0%
!! TCTTGAAAAAGCATCTCATG+GGG - chr5.2:12705681-12705700 None:intergenic 35.0%
!!! GTACTTCTTTTTTAGGTCCA+AGG - chr5.2:12706145-12706164 None:intergenic 35.0%
AGGGACATTTCTGAATCAAG+TGG - chr5.2:12705764-12705783 None:intergenic 40.0%
CAATTAGGAATACTTGGCTG+TGG - chr5.2:12705997-12706016 None:intergenic 40.0%
CACCATTGAGAATGATGTTG+GGG + chr5.2:12705249-12705268 MS.gene64737:CDS 40.0%
CATTCTGAATCATGAGAGCT+TGG - chr5.2:12705791-12705810 None:intergenic 40.0%
CGCAAAGTTTATCCAAGCTT+TGG - chr5.2:12705201-12705220 None:intergenic 40.0%
TCAACAAATGAAACCTCGTC+TGG - chr5.2:12706069-12706088 None:intergenic 40.0%
TCTGTGAATGCACTTCTTGA+TGG + chr5.2:12705136-12705155 MS.gene64737:CDS 40.0%
TGTGGAGACCATGCTAAAAT+TGG - chr5.2:12705979-12705998 None:intergenic 40.0%
TTGATTTCGTGTCCAAACAG+TGG + chr5.2:12705643-12705662 MS.gene64737:intron 40.0%
!! TTGTTTTTCAGCCCAAAGCT+TGG + chr5.2:12705186-12705205 MS.gene64737:CDS 40.0%
AACCTTCGCCGAATGTGATT+TGG - chr5.2:12705321-12705340 None:intergenic 45.0%
AAGATACGCTTCCACCACAT+TGG - chr5.2:12705362-12705381 None:intergenic 45.0%
AATCATGAGAGCTTGGAGCA+AGG - chr5.2:12705784-12705803 None:intergenic 45.0%
ACCGTTCCTGTAAGCAACAA+AGG - chr5.2:12705954-12705973 None:intergenic 45.0%
ACCTTCGCCGAATGTGATTT+GGG - chr5.2:12705320-12705339 None:intergenic 45.0%
ACGATGGAACCAAGTGATGT+GGG - chr5.2:12705394-12705413 None:intergenic 45.0%
AGATACGCTTCCACCACATT+GGG - chr5.2:12705361-12705380 None:intergenic 45.0%
AGCCCCAACATCATTCTCAA+TGG - chr5.2:12705254-12705273 None:intergenic 45.0%
AGGTGGGATACGAGACAATT+AGG - chr5.2:12706012-12706031 None:intergenic 45.0%
ATCATGAGAGCTTGGAGCAA+GGG - chr5.2:12705783-12705802 None:intergenic 45.0%
ATTTCGAGGATTTCCAGACG+AGG + chr5.2:12706053-12706072 MS.gene64737:CDS 45.0%
CCGTTCCTGTAAGCAACAAA+GGG - chr5.2:12705953-12705972 None:intergenic 45.0%
CTTGTACAACTTGCCCAATG+TGG + chr5.2:12705345-12705364 MS.gene64737:CDS 45.0%
GAATGATGTTGGGGCTTACT+TGG + chr5.2:12705258-12705277 MS.gene64737:CDS 45.0%
GATGTGTTTCCCACATCACT+TGG + chr5.2:12705382-12705401 MS.gene64737:CDS 45.0%
GTTGAGTCGTTCAACAACCA+AGG + chr5.2:12705462-12705481 MS.gene64737:CDS 45.0%
TTTCAGTTGGCACATTGCAG+AGG - chr5.2:12706202-12706221 None:intergenic 45.0%
! CCCTTTGTTGCTTACAGGAA+CGG + chr5.2:12705950-12705969 MS.gene64737:intron 45.0%
! TCAAGCCCTTTGTTGCTTAC+AGG + chr5.2:12705945-12705964 MS.gene64737:intron 45.0%
! TTCAACCTTTTCACGGAAGG+CGG - chr5.2:12705226-12705245 None:intergenic 45.0%
!! AACGGTCGCCAATTTTAGCA+TGG + chr5.2:12705968-12705987 MS.gene64737:CDS 45.0%
AACCTCTTTGGCGCTCTCTA+TGG + chr5.2:12705424-12705443 MS.gene64737:CDS 50.0%
ACCCAAATCACATTCGGCGA+AGG + chr5.2:12705316-12705335 MS.gene64737:CDS 50.0%
ACCTCTTTGGCGCTCTCTAT+GGG + chr5.2:12705425-12705444 MS.gene64737:CDS 50.0%
CGCCAAAGAGGTTGTGCAAA+GGG - chr5.2:12705417-12705436 None:intergenic 50.0%
GACGATGGAACCAAGTGATG+TGG - chr5.2:12705395-12705414 None:intergenic 50.0%
GTACAACTTGCCCAATGTGG+TGG + chr5.2:12705348-12705367 MS.gene64737:CDS 50.0%
GTCCCTTTGCACAACCTCTT+TGG + chr5.2:12705412-12705431 MS.gene64737:CDS 50.0%
TTCACCAAGCAGCCACTGTT+TGG - chr5.2:12705658-12705677 None:intergenic 50.0%
! TCAACCTTTTCACGGAAGGC+GGG - chr5.2:12705225-12705244 None:intergenic 50.0%
ACCAGGGAAGAACGAGCTCA+AGG - chr5.2:12705722-12705741 None:intergenic 55.0%
GAGGTTGTGCAAAGGGACGA+TGG - chr5.2:12705410-12705429 None:intergenic 55.0%
GCGCCAAAGAGGTTGTGCAA+AGG - chr5.2:12705418-12705437 None:intergenic 55.0%
GTGTCCAAACAGTGGCTGCT+TGG + chr5.2:12705651-12705670 MS.gene64737:intron 55.0%
!! TCCCATAGAGAGCGCCAAAG+AGG - chr5.2:12705429-12705448 None:intergenic 55.0%
GCCTTGAGCTCGTTCTTCCC+TGG + chr5.2:12705718-12705737 MS.gene64737:CDS 60.0%
TGGCACATTGCAGAGGCCCT+TGG - chr5.2:12706195-12706214 None:intergenic 60.0%
GCGTCCCGCCTTCCGTGAAA+AGG + chr5.2:12705218-12705237 MS.gene64737:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 12705100 12706230 12705100 ID=MS.gene64737
chr5.2 mRNA 12705100 12706230 12705100 ID=MS.gene64737.t1;Parent=MS.gene64737
chr5.2 exon 12705100 12705483 12705100 ID=MS.gene64737.t1.exon1;Parent=MS.gene64737.t1
chr5.2 CDS 12705100 12705483 12705100 ID=cds.MS.gene64737.t1;Parent=MS.gene64737.t1
chr5.2 exon 12705663 12705815 12705663 ID=MS.gene64737.t1.exon2;Parent=MS.gene64737.t1
chr5.2 CDS 12705663 12705815 12705663 ID=cds.MS.gene64737.t1;Parent=MS.gene64737.t1
chr5.2 exon 12705967 12706230 12705967 ID=MS.gene64737.t1.exon3;Parent=MS.gene64737.t1
chr5.2 CDS 12705967 12706230 12705967 ID=cds.MS.gene64737.t1;Parent=MS.gene64737.t1
Gene Sequence

>MS.gene64737

ATGTTGATGATCAACATTGGTTATGTGGAAGTGTCTTCTGTGAATGCACTTCTTGATGGCTGCTCAAATCTAGAAATTCTGGATCTTTGTTTTTCAGCCCAAAGCTTGGATAAACTTTGCGTCCCGCCTTCCGTGAAAAGGTTGAAAATCACCATTGAGAATGATGTTGGGGCTTACTTGGAAGTAAATGCACCGGATCTTCAATACCTTAATATTACCCAAATCACATTCGGCGAAGGTTTCAGCTTGTACAACTTGCCCAATGTGGTGGAAGCGTATCTTGATGTGTTTCCCACATCACTTGGTTCCATCGTCCCTTTGCACAACCTCTTTGGCGCTCTCTATGGGACAAAACATCTCATGTTGAGTCGTTCAACAACCAAGGTTAAGTTTTTTCTTTAGTTATTTTATGTTTACCTCATCATTTATATATAGAGTTAGAACCTAACTAATAATAATAAATCATTAAGTAACTATATTTCTGATAATTGTGATATATTTATATTTGTAGATAGATAGATATCGTTTTGTACTAATTACTACTTGATTTCGTGTCCAAACAGTGGCTGCTTGGTGAACCCCATGAGATGCTTTTTCAAGAATTTCGATATTTGATTCGCCTTGAGCTCGTTCTTCCCTGGTTTAACTCACATTCTCTTCTCCACTTGATTCAGAAATGTCCCTTGCTCCAAGCTCTCATGATTCAGAATGACAAGGTTTCATTTAATCCAAGCTTAATTTGGTCTATTAAACTTTGTTGCTAAATTAGAAGTTGCATCTTATTGAACACTACGCTACTGAATATATGACATGATTAATTCATTATTAAGAATATTGCATCTTATTCAAGCCCTTTGTTGCTTACAGGAACGGTCGCCAATTTTAGCATGGTCTCCACAGCCAAGTATTCCTAATTGTCTCGTATCCCACCTGAGCTTTATTGAATTTAAAGGATTTCGAGGATTTCCAGACGAGGTTTCATTTGTTGAGTATGTTTTGCAAAAAGGACATGTTTTAAAGACGATGATTATTGCTGATATTTCCTTGGACCTAAAAAAGAAGTACTTCATTCTCAAGTTATTATCTGATGTGCCAAGGGCCTCTGCAATGTGCCAACTGAAATTTGATTGA
Protein sequence

>MS.gene64737.t1

MLMINIGYVEVSSVNALLDGCSNLEILDLCFSAQSLDKLCVPPSVKRLKITIENDVGAYLEVNAPDLQYLNITQITFGEGFSLYNLPNVVEAYLDVFPTSLGSIVPLHNLFGALYGTKHLMLSRSTTKWLLGEPHEMLFQEFRYLIRLELVLPWFNSHSLLHLIQKCPLLQALMIQNDKERSPILAWSPQPSIPNCLVSHLSFIEFKGFRGFPDEVSFVEYVLQKGHVLKTMIIADISLDLKKKYFILKLLSDVPRASAMCQLKFD