AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64990.t1 MTR_8g469020 40.749 454 144 12 21 353 6 455 1.95e-90 278
MS.gene64990.t1 MTR_8g058965 41.176 459 148 12 15 353 4 460 2.71e-86 268
MS.gene64990.t1 MTR_8g062310 43.066 411 152 9 22 353 25 432 6.24e-85 264
MS.gene64990.t1 MTR_8g070950 43.207 449 148 12 1 353 1 438 9.84e-85 263
MS.gene64990.t1 MTR_8g062080 40.481 457 160 16 1 353 1 449 6.43e-79 249
MS.gene64990.t1 MTR_8g062300 48.197 305 107 7 96 353 181 481 1.33e-72 233
MS.gene64990.t1 MTR_8g062010 50.714 280 106 5 105 354 158 435 7.17e-72 230
MS.gene64990.t1 MTR_4g050250 48.638 257 71 7 96 295 168 420 8.47e-64 209
MS.gene64990.t1 MTR_4g050250 36.000 100 62 2 6 103 5 104 1.41e-12 68.9
MS.gene64990.t1 MTR_2g086020 69.167 120 37 0 234 353 200 319 5.14e-50 170
MS.gene64990.t1 MTR_8g467790 37.466 363 149 11 22 309 148 507 7.95e-47 166
MS.gene64990.t1 MTR_2g083840 33.038 451 189 15 9 349 10 457 1.00e-39 146
MS.gene64990.t1 MTR_8g014260 36.213 301 147 10 89 349 156 451 4.93e-38 141
MS.gene64990.t1 MTR_8g058970 34.740 308 150 8 89 349 174 477 5.94e-35 133
MS.gene64990.t1 MTR_8g058970 53.731 67 27 2 1 66 1 64 3.78e-13 70.5
MS.gene64990.t1 MTR_8g014160 29.602 402 208 14 14 349 33 425 6.29e-34 130
MS.gene64990.t1 MTR_4g024710 33.645 321 163 12 69 349 37 347 3.58e-31 120
MS.gene64990.t1 MTR_8g468810 35.235 298 147 11 96 349 168 463 5.69e-31 122
MS.gene64990.t1 MTR_8g468810 54.795 73 23 3 1 66 1 70 1.36e-13 72.0
MS.gene64990.t1 MTR_8g077460 35.798 257 125 10 96 349 156 375 7.24e-29 115
MS.gene64990.t1 MTR_8g014210 50.877 114 53 2 236 349 121 231 7.34e-29 112
MS.gene64990.t1 MTR_8g467800 33.657 309 144 11 98 353 157 457 2.91e-28 114
MS.gene64990.t1 MTR_8g467800 51.562 64 28 1 6 66 1 64 2.79e-11 64.7
MS.gene64990.t1 MTR_5g092960 31.734 271 135 6 124 348 195 461 1.21e-25 107
MS.gene64990.t1 MTR_3g099800 59.770 87 34 1 261 346 19 105 4.93e-25 97.8
MS.gene64990.t1 MTR_8g062270 33.462 260 124 10 131 348 201 453 1.69e-22 98.6
MS.gene64990.t1 MTR_8g468840 32.549 255 132 7 130 347 197 448 3.32e-20 91.7
MS.gene64990.t1 MTR_8g468760 32.624 282 142 9 96 348 156 418 1.74e-19 89.4
MS.gene64990.t1 MTR_4g032730 30.351 313 152 13 96 348 160 466 1.76e-19 89.7
MS.gene64990.t1 MTR_8g014230 47.619 84 42 2 259 342 17 98 5.38e-18 79.0
MS.gene64990.t1 MTR_4g024745 31.047 277 146 10 96 332 13 284 1.33e-17 82.4
MS.gene64990.t1 MTR_8g445780 30.453 243 131 7 96 302 150 390 5.54e-17 81.6
MS.gene64990.t1 MTR_1g041245 40.351 114 64 2 239 349 274 386 6.68e-15 75.5
MS.gene64990.t1 MTR_7g098510 38.182 110 68 0 240 349 282 391 6.84e-15 75.5
MS.gene64990.t1 MTR_8g468810 54.795 73 23 3 1 66 1 70 4.61e-14 72.4
MS.gene64990.t1 MTR_8g468810 54.795 73 23 3 1 66 1 70 5.00e-14 72.4
MS.gene64990.t1 MTR_8g468810 54.795 73 23 3 1 66 1 70 6.92e-14 72.4
MS.gene64990.t1 MTR_8g468810 54.795 73 23 3 1 66 1 70 8.45e-14 72.0
MS.gene64990.t1 MTR_7g032380 35.135 111 70 2 240 349 247 356 3.22e-13 70.5
MS.gene64990.t1 MTR_4g024770 47.143 70 32 2 1 70 8 72 4.13e-13 64.3
MS.gene64990.t1 MTR_7g032370 35.135 111 70 2 240 349 243 352 1.18e-12 68.6
MS.gene64990.t1 MTR_7g098570 34.906 106 69 0 240 345 284 389 1.15e-11 66.2
MS.gene64990.t1 MTR_7g098480 34.862 109 71 0 240 348 280 388 1.81e-11 65.5
MS.gene64990.t1 MTR_8g467800 51.562 64 28 1 6 66 1 64 1.94e-11 64.7
MS.gene64990.t1 MTR_5g021550 50.820 61 26 2 8 66 5 63 1.99e-11 62.0
MS.gene64990.t1 MTR_3g115430 40.789 76 42 1 274 349 53 125 2.44e-11 60.8
MS.gene64990.t1 MTR_8g014180 49.206 63 27 2 1 63 1 58 2.84e-11 58.9
MS.gene64990.t1 MTR_1g108820 25.495 404 206 15 16 346 2 383 3.49e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 80 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGCAGATGCGTCTCTTTA+AGG 0.126646 8.4:-39603839 None:intergenic
CTGCTTCAATTTGAATCTTC+TGG 0.185760 8.4:-39604292 MS.gene64990:CDS
ATTGTTGAATTTCAACTTCT+TGG 0.196663 8.4:+39604640 None:intergenic
AATCATTGGAATCTACTTTA+AGG 0.201592 8.4:+39604597 None:intergenic
AGGTGGGATTCAAGACATTT+AGG 0.296428 8.4:+39604058 None:intergenic
GAGGCGTGGGTATGCCAGGC+TGG 0.335962 8.4:-39605319 MS.gene64990:CDS
TCAGACATTGCCTTTCTCTC+TGG 0.356495 8.4:-39604737 MS.gene64990:CDS
TAAACTCGACATATGCGTTA+TGG 0.382182 8.4:-39604762 MS.gene64990:CDS
TTAAAGTAGATTCCAATGAT+TGG 0.382239 8.4:-39604595 MS.gene64990:CDS
GTATCCTTCTATGTGAATAT+AGG 0.383394 8.4:+39604033 None:intergenic
AGCGGAAGCGGTTGAGAATA+GGG 0.403075 8.4:+39604513 None:intergenic
CACATCATCAAGCCAATCAT+TGG 0.407241 8.4:+39604583 None:intergenic
TAGCGGAAGCGGTTGAGAAT+AGG 0.408721 8.4:+39604512 None:intergenic
CTCACCTATATTCACATAGA+AGG 0.412719 8.4:-39604037 MS.gene64990:CDS
CAGTAGATATAATTCATTAC+CGG 0.417944 8.4:+39604481 None:intergenic
TTCGCAGATGGCGCCACCTC+TGG 0.419656 8.4:-39605928 MS.gene64990:CDS
TGGGTATGCCAGGCTGGGAT+TGG 0.422480 8.4:-39605313 MS.gene64990:CDS
CCACCTCTGGAAGCATCGTC+AGG 0.424773 8.4:-39605915 MS.gene64990:CDS
ATATGCAAAGTTTCGAGAAT+GGG 0.428394 8.4:+39604710 None:intergenic
TTCCACTTTCCGACGACGAC+TGG 0.440235 8.4:-39605890 MS.gene64990:CDS
CGGGACCTTGGTAGCGGAAG+CGG 0.448312 8.4:+39604501 None:intergenic
TGTGCACAGTCGGGGATCAT+TGG 0.454052 8.4:-39604564 MS.gene64990:CDS
TCTAAATGCTCCAGTCTTGT+CGG 0.455505 8.4:-39604842 MS.gene64990:intron
TCAGCTCTTCTTCAAGTCCT+TGG 0.472411 8.4:+39604011 None:intergenic
TAGAGCTGGTGTTGAGGCGT+GGG 0.474099 8.4:-39605332 MS.gene64990:CDS
ACAAGTATCGTTCTCTCAAA+AGG 0.474341 8.4:-39603907 MS.gene64990:CDS
AATGGGGCAGCCAGAGAGAA+AGG 0.477378 8.4:+39604727 None:intergenic
TTCTTGGAGGAAGGTGTCAT+AGG 0.479457 8.4:+39604656 None:intergenic
AATATGCAAAGTTTCGAGAA+TGG 0.481050 8.4:+39604709 None:intergenic
CAGAAGATTCAAATTGAAGC+AGG 0.483032 8.4:+39604293 None:intergenic
TGTTGAGGCGTGGGTATGCC+AGG 0.485290 8.4:-39605323 MS.gene64990:CDS
TGGTAGTGAGCTTAGTGCCT+TGG 0.485394 8.4:-39605293 MS.gene64990:intron
TCAAGACATTTAGGAACTGT+TGG 0.486800 8.4:+39604067 None:intergenic
TGCAGTTCACATGCTCCTAC+AGG 0.488894 8.4:+39604094 None:intergenic
TCAACAATGGAAATTTCTCA+TGG 0.492414 8.4:-39604625 MS.gene64990:CDS
GCTTGATGATGTGCACAGTC+GGG 0.498176 8.4:-39604573 MS.gene64990:CDS
GTTGAATTTCAACTTCTTGG+AGG 0.501300 8.4:+39604643 None:intergenic
AGGCGTGGGTATGCCAGGCT+GGG 0.503559 8.4:-39605318 MS.gene64990:CDS
ATGTGGCAAACTATAGATTC+CGG 0.504585 8.4:+39605998 None:intergenic
TGGCAAGTGACAGAGCCCTT+TGG 0.506776 8.4:+39603872 None:intergenic
TGCCAGTCGTCGTCGGAAAG+TGG 0.512153 8.4:+39605888 None:intergenic
AATTTCAACTTCTTGGAGGA+AGG 0.518051 8.4:+39604647 None:intergenic
GGCTTGATGATGTGCACAGT+CGG 0.522089 8.4:-39604574 MS.gene64990:CDS
ATAATTCATTACCGGGACCT+TGG 0.531008 8.4:+39604489 None:intergenic
TTAGAGCTGGTGTTGAGGCG+TGG 0.532571 8.4:-39605333 MS.gene64990:intron
CGCTTCCGCTACCAAGGTCC+CGG 0.534639 8.4:-39604500 MS.gene64990:CDS
GCTGCGTCATTCAACAGAAA+AGG 0.536020 8.4:-39604459 MS.gene64990:intron
CATTACCGGGACCTTGGTAG+CGG 0.540771 8.4:+39604495 None:intergenic
CAAATTGAAGCAGGGAAGGA+TGG 0.548228 8.4:+39604302 None:intergenic
ACGACTGGCACAATTACAAA+AGG 0.548744 8.4:-39605875 MS.gene64990:intron
ATAGCAAAACGACGGAAACC+AGG 0.549220 8.4:-39606061 MS.gene64990:CDS
GCTCACTACCAATCCCAGCC+TGG 0.550269 8.4:+39605305 None:intergenic
AAGGTTAACCCGTGTACCAA+AGG 0.550537 8.4:-39603888 MS.gene64990:CDS
GACAGAGCCCTTTGGTACAC+GGG 0.555027 8.4:+39603880 None:intergenic
GTAATTGTGCCAGTCGTCGT+CGG 0.555951 8.4:+39605881 None:intergenic
GATTCAAATTGAAGCAGGGA+AGG 0.558902 8.4:+39604298 None:intergenic
AGGTTAACCCGTGTACCAAA+GGG 0.564649 8.4:-39603887 MS.gene64990:CDS
TGACAGAGCCCTTTGGTACA+CGG 0.565716 8.4:+39603879 None:intergenic
CTATGTGAATATAGGTGAGG+TGG 0.567193 8.4:+39604041 None:intergenic
CATCTGCATCAAATTCAAGT+TGG 0.574506 8.4:+39603852 None:intergenic
CCTGACGATGCTTCCAGAGG+TGG 0.576607 8.4:+39605915 None:intergenic
TCGAGAGGAATGATAGGATG+TGG 0.583121 8.4:+39605981 None:intergenic
TCACATGCTCCTACAGGTGA+TGG 0.586202 8.4:+39604100 None:intergenic
TATGTGAATATAGGTGAGGT+GGG 0.599772 8.4:+39604042 None:intergenic
CTCAACCGCTTCCGCTACCA+AGG 0.603903 8.4:-39604506 MS.gene64990:CDS
CGGTAAAATATTCATCATGT+CGG 0.604834 8.4:+39606018 None:intergenic
TATGCAAAGTTTCGAGAATG+GGG 0.608254 8.4:+39604711 None:intergenic
CCAGGCGATGAAGAAAATGA+TGG 0.613505 8.4:-39606043 MS.gene64990:CDS
AGAAGATTCAAATTGAAGCA+GGG 0.625615 8.4:+39604294 None:intergenic
AAGAAGTTGAAATTCAACAA+TGG 0.632882 8.4:-39604638 MS.gene64990:CDS
TAGGAAGAACCATCACCTGT+AGG 0.643014 8.4:-39604109 MS.gene64990:CDS
AGTAGATATAATTCATTACC+GGG 0.645260 8.4:+39604482 None:intergenic
TCTCATACTTCAAATCGACA+AGG 0.646252 8.4:-39604235 MS.gene64990:intron
CTTCTATGTGAATATAGGTG+AGG 0.646334 8.4:+39604038 None:intergenic
CTTGATGATGTGCACAGTCG+GGG 0.650613 8.4:-39604572 MS.gene64990:CDS
AATAAGACTCGTCACCACGA+CGG 0.659516 8.4:+39605952 None:intergenic
AGACCTGACGATGCTTCCAG+AGG 0.676435 8.4:+39605912 None:intergenic
ATTCACATAGAAGGATACCA+AGG 0.680294 8.4:-39604028 MS.gene64990:CDS
CAAGCATGATAGCAAAACGA+CGG 0.696903 8.4:-39606069 MS.gene64990:CDS
CCTCTCGATCAAAACCGTCG+TGG 0.715415 8.4:-39605966 MS.gene64990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCTTAAATACAATTTT+TGG + chr8.4:39605030-39605049 None:intergenic 10.0%
!!! TATTTTTGTTGATATTTCAA+TGG - chr8.4:39605981-39606000 MS.gene64990:CDS 15.0%
!! AATTCTGGATTATTTATAAC+AGG + chr8.4:39605589-39605608 None:intergenic 20.0%
!! ATAGGATCAAAGTTAAATTA+AGG + chr8.4:39604977-39604996 None:intergenic 20.0%
!! ATTCTGGATTATTTATAACA+GGG + chr8.4:39605588-39605607 None:intergenic 20.0%
!! TGATTATGAAATGTTTGAAT+TGG + chr8.4:39604801-39604820 None:intergenic 20.0%
!!! TGGGTTATTGATTTTTATAT+TGG - chr8.4:39604541-39604560 MS.gene64990:CDS 20.0%
!!! TTTTGGATATTATTGATCTA+TGG + chr8.4:39605013-39605032 None:intergenic 20.0%
! AAAAATAATTGAATACACCC+AGG + chr8.4:39604489-39604508 None:intergenic 25.0%
! AAAGGTTCAAAAAAATTGCA+CGG - chr8.4:39604063-39604082 MS.gene64990:CDS 25.0%
! AAGAAGTTGAAATTCAACAA+TGG - chr8.4:39605282-39605301 MS.gene64990:intron 25.0%
! AATCATTGGAATCTACTTTA+AGG + chr8.4:39605326-39605345 None:intergenic 25.0%
! ACAATGTAAGAAGATATGTT+TGG + chr8.4:39604098-39604117 None:intergenic 25.0%
! ACATTGTAATTTCATGGTAA+AGG - chr8.4:39604111-39604130 MS.gene64990:intron 25.0%
! ACTTATCAAGTTTCATTCAA+TGG - chr8.4:39605715-39605734 MS.gene64990:intron 25.0%
! AGTAGATATAATTCATTACC+GGG + chr8.4:39605441-39605460 None:intergenic 25.0%
! ATTGTTGAATTTCAACTTCT+TGG + chr8.4:39605283-39605302 None:intergenic 25.0%
! CAGTAGATATAATTCATTAC+CGG + chr8.4:39605442-39605461 None:intergenic 25.0%
! CATTTCATAATCAATTGTAC+CGG - chr8.4:39604808-39604827 MS.gene64990:CDS 25.0%
! CTTCTTACATTGTAATTTCA+TGG - chr8.4:39604105-39604124 MS.gene64990:CDS 25.0%
! TAACTTTGATCCTATGAAAA+TGG - chr8.4:39604982-39605001 MS.gene64990:intron 25.0%
! TAATTTCATGGTAAAGGTTT+GGG - chr8.4:39604117-39604136 MS.gene64990:intron 25.0%
! TTAAAGTAGATTCCAATGAT+TGG - chr8.4:39605325-39605344 MS.gene64990:CDS 25.0%
! TTCTGGATTATTTATAACAG+GGG + chr8.4:39605587-39605606 None:intergenic 25.0%
!! AAACTTGTTTATACTATGAG+TGG - chr8.4:39604395-39604414 MS.gene64990:intron 25.0%
!! GATTTTTATATTGGAGTCTT+TGG - chr8.4:39604550-39604569 MS.gene64990:CDS 25.0%
!! GCTGAATATATTTTGTTGAA+CGG - chr8.4:39605937-39605956 MS.gene64990:CDS 25.0%
!!! TTGTTTTAGTTTGAATCTTG+TGG - chr8.4:39604654-39604673 MS.gene64990:CDS 25.0%
AATATGCAAAGTTTCGAGAA+TGG + chr8.4:39605214-39605233 None:intergenic 30.0%
AGAAATAAGAGGATTCGTAA+GGG - chr8.4:39604223-39604242 MS.gene64990:intron 30.0%
AGAAGATTCAAATTGAAGCA+GGG + chr8.4:39605629-39605648 None:intergenic 30.0%
AGTTTCATTCAATGGATGTT+TGG - chr8.4:39605723-39605742 MS.gene64990:intron 30.0%
ATATGCAAAGTTTCGAGAAT+GGG + chr8.4:39605213-39605232 None:intergenic 30.0%
ATATGTGGACGAATTATTAC+CGG - chr8.4:39604324-39604343 MS.gene64990:intron 30.0%
CGGTAAAATATTCATCATGT+CGG + chr8.4:39603905-39603924 None:intergenic 30.0%
GAATCTTGTGGTTATTTGTT+TGG - chr8.4:39604666-39604685 MS.gene64990:CDS 30.0%
GTAATTTCATGGTAAAGGTT+TGG - chr8.4:39604116-39604135 MS.gene64990:intron 30.0%
GTATCCTTCTATGTGAATAT+AGG + chr8.4:39605890-39605909 None:intergenic 30.0%
TCAACAATGGAAATTTCTCA+TGG - chr8.4:39605295-39605314 MS.gene64990:CDS 30.0%
TTGTACATGATAACAAGTGA+TGG + chr8.4:39605547-39605566 None:intergenic 30.0%
! AATTGTACCGGAATCAATTT+TGG - chr8.4:39604820-39604839 MS.gene64990:CDS 30.0%
! AGGAACTTTTGTCAGAAATT+TGG + chr8.4:39605247-39605266 None:intergenic 30.0%
! CAAACTAAAACAAAGTACCA+AGG + chr8.4:39604647-39604666 None:intergenic 30.0%
! CGACATGATGAATATTTTAC+CGG - chr8.4:39603903-39603922 MS.gene64990:CDS 30.0%
! GGAACTTTTGTCAGAAATTT+GGG + chr8.4:39605246-39605265 None:intergenic 30.0%
! TCACATTATTTTCCAGAATG+AGG - chr8.4:39604297-39604316 MS.gene64990:CDS 30.0%
! TTCATTTTACATCACTCAAG+TGG - chr8.4:39605133-39605152 MS.gene64990:intron 30.0%
! TTGTTTGGTAGGTGTTTTAT+AGG - chr8.4:39604681-39604700 MS.gene64990:CDS 30.0%
! TTTTATATTGGAGTCTTTGG+CGG - chr8.4:39604553-39604572 MS.gene64990:CDS 30.0%
!! TTTGGGAAAGTGTTATGAAA+TGG - chr8.4:39604134-39604153 MS.gene64990:intron 30.0%
!!! GGTTTTTTGTTTTTTAGAGC+TGG - chr8.4:39604574-39604593 MS.gene64990:CDS 30.0%
!!! GTACTGTTTTTAGTACTACT+TGG - chr8.4:39604760-39604779 MS.gene64990:CDS 30.0%
AATTTCAACTTCTTGGAGGA+AGG + chr8.4:39605276-39605295 None:intergenic 35.0%
ATGTGGCAAACTATAGATTC+CGG + chr8.4:39603925-39603944 None:intergenic 35.0%
ATTCACATAGAAGGATACCA+AGG - chr8.4:39605892-39605911 MS.gene64990:CDS 35.0%
CAGAAGATTCAAATTGAAGC+AGG + chr8.4:39605630-39605649 None:intergenic 35.0%
CATCTGCATCAAATTCAAGT+TGG + chr8.4:39606071-39606090 None:intergenic 35.0%
CGAATTATTACCGGAAATGA+TGG - chr8.4:39604333-39604352 MS.gene64990:intron 35.0%
CTCACCTATATTCACATAGA+AGG - chr8.4:39605883-39605902 MS.gene64990:CDS 35.0%
CTGCTTCAATTTGAATCTTC+TGG - chr8.4:39605628-39605647 MS.gene64990:intron 35.0%
CTTCTATGTGAATATAGGTG+AGG + chr8.4:39605885-39605904 None:intergenic 35.0%
CTTGTGGTTATTTGTTTGGT+AGG - chr8.4:39604670-39604689 MS.gene64990:CDS 35.0%
GAAATAAGAGGATTCGTAAG+GGG - chr8.4:39604224-39604243 MS.gene64990:intron 35.0%
GAGAAATAAGAGGATTCGTA+AGG - chr8.4:39604222-39604241 MS.gene64990:intron 35.0%
GTAATGAAGGGAGAAATAAG+AGG - chr8.4:39604212-39604231 MS.gene64990:intron 35.0%
GTACATACTACGTGTATGTT+TGG + chr8.4:39604863-39604882 None:intergenic 35.0%
GTTGAATTTCAACTTCTTGG+AGG + chr8.4:39605280-39605299 None:intergenic 35.0%
GTTTATACTATGAGTGGAGT+TGG - chr8.4:39604401-39604420 MS.gene64990:intron 35.0%
TAAACTCGACATATGCGTTA+TGG - chr8.4:39605158-39605177 MS.gene64990:intron 35.0%
TAGTCTATACATGCAAGTCA+TGG - chr8.4:39605772-39605791 MS.gene64990:intron 35.0%
TATGCAAAGTTTCGAGAATG+GGG + chr8.4:39605212-39605231 None:intergenic 35.0%
TATGTGAATATAGGTGAGGT+GGG + chr8.4:39605881-39605900 None:intergenic 35.0%
TCAAGACATTTAGGAACTGT+TGG + chr8.4:39605856-39605875 None:intergenic 35.0%
TCTCATACTTCAAATCGACA+AGG - chr8.4:39605685-39605704 MS.gene64990:intron 35.0%
TTGTTATCATGTACAAGCAG+TGG - chr8.4:39605551-39605570 MS.gene64990:intron 35.0%
! ACAAGTATCGTTCTCTCAAA+AGG - chr8.4:39606013-39606032 MS.gene64990:CDS 35.0%
! ACCGAATTTGTTTGTGCATT+GGG - chr8.4:39604180-39604199 MS.gene64990:intron 35.0%
! GGATGGACTTTAGAAAATTC+TGG + chr8.4:39605604-39605623 None:intergenic 35.0%
! TATTTGGCATGCTACCATTT+TGG - chr8.4:39604255-39604274 MS.gene64990:CDS 35.0%
! TTGCGGTAAAGGTTTTTGTT+TGG - chr8.4:39604442-39604461 MS.gene64990:intron 35.0%
! TTTTGATCGAGAGGAATGAT+AGG + chr8.4:39603948-39603967 None:intergenic 35.0%
!! AAAGGTTTTTGTTTGGCTAG+AGG - chr8.4:39604449-39604468 MS.gene64990:intron 35.0%
!!! TATGGTCTTGCCATTTTCAT+AGG + chr8.4:39604995-39605014 None:intergenic 35.0%
ACGACTGGCACAATTACAAA+AGG - chr8.4:39604045-39604064 MS.gene64990:CDS 40.0%
ACTAAAAACAGTACCACTCG+CGG + chr8.4:39604754-39604773 None:intergenic 40.0%
AGGTGGGATTCAAGACATTT+AGG + chr8.4:39605865-39605884 None:intergenic 40.0%
ATAATTCATTACCGGGACCT+TGG + chr8.4:39605434-39605453 None:intergenic 40.0%
CAAGCATGATAGCAAAACGA+CGG - chr8.4:39603851-39603870 MS.gene64990:CDS 40.0%
CAATGCACAAACAAATTCGG+TGG + chr8.4:39604181-39604200 None:intergenic 40.0%
CACATCATCAAGCCAATCAT+TGG + chr8.4:39605340-39605359 None:intergenic 40.0%
CACTACATCACCATCATTTC+CGG + chr8.4:39604346-39604365 None:intergenic 40.0%
CATACAAATGCCCCGTATAT+AGG + chr8.4:39604714-39604733 None:intergenic 40.0%
CCACATATTTCACCTCATTC+TGG + chr8.4:39604312-39604331 None:intergenic 40.0%
CCAGAATGAGGTGAAATATG+TGG - chr8.4:39604309-39604328 MS.gene64990:CDS 40.0%
CTACTTGGCGTGAATAGTAT+TGG - chr8.4:39604775-39604794 MS.gene64990:CDS 40.0%
CTATGTGAATATAGGTGAGG+TGG + chr8.4:39605882-39605901 None:intergenic 40.0%
GATTCAAATTGAAGCAGGGA+AGG + chr8.4:39605625-39605644 None:intergenic 40.0%
GCCCAATGCACAAACAAATT+CGG + chr8.4:39604184-39604203 None:intergenic 40.0%
! AAATGATGGTGATGTAGTGG+CGG - chr8.4:39604347-39604366 MS.gene64990:intron 40.0%
! AGAGGGACCAAAATTGATTC+CGG + chr8.4:39604830-39604849 None:intergenic 40.0%
! CACCGAATTTGTTTGTGCAT+TGG - chr8.4:39604179-39604198 MS.gene64990:intron 40.0%
! GTAAGGGGTTGTCGATTATT+TGG - chr8.4:39604239-39604258 MS.gene64990:CDS 40.0%
! TCTAAATGCTCCAGTCTTGT+CGG - chr8.4:39605078-39605097 MS.gene64990:intron 40.0%
!! ATGCTACCATTTTGGCAGTT+TGG - chr8.4:39604263-39604282 MS.gene64990:CDS 40.0%
!!! CGAGTCTTATTTTTCGCAGA+TGG - chr8.4:39603980-39603999 MS.gene64990:CDS 40.0%
!!! GTTTTTTAGAGCTGGTGTTG+AGG - chr8.4:39604582-39604601 MS.gene64990:CDS 40.0%
AAGGTTAACCCGTGTACCAA+AGG - chr8.4:39606032-39606051 MS.gene64990:CDS 45.0%
AATAAGACTCGTCACCACGA+CGG + chr8.4:39603971-39603990 None:intergenic 45.0%
ACAAATGCCCCGTATATAGG+CGG + chr8.4:39604711-39604730 None:intergenic 45.0%
AGGTTAACCCGTGTACCAAA+GGG - chr8.4:39606033-39606052 MS.gene64990:CDS 45.0%
ATAGCAAAACGACGGAAACC+AGG - chr8.4:39603859-39603878 MS.gene64990:CDS 45.0%
ATAGGTGCTCCGCCTATATA+CGG - chr8.4:39604699-39604718 MS.gene64990:CDS 45.0%
CAAATTGAAGCAGGGAAGGA+TGG + chr8.4:39605621-39605640 None:intergenic 45.0%
CCAGGCGATGAAGAAAATGA+TGG - chr8.4:39603877-39603896 MS.gene64990:CDS 45.0%
GCTGCGTCATTCAACAGAAA+AGG - chr8.4:39605461-39605480 MS.gene64990:intron 45.0%
GGTTCTTCCTATCGACAACA+AGG + chr8.4:39605802-39605821 None:intergenic 45.0%
TAGGAAGAACCATCACCTGT+AGG - chr8.4:39605811-39605830 MS.gene64990:intron 45.0%
TCAGACATTGCCTTTCTCTC+TGG - chr8.4:39605183-39605202 MS.gene64990:intron 45.0%
TCAGCTCTTCTTCAAGTCCT+TGG + chr8.4:39605912-39605931 None:intergenic 45.0%
TCGAGAGGAATGATAGGATG+TGG + chr8.4:39603942-39603961 None:intergenic 45.0%
TGCTTGCCAAACTGCCAAAA+TGG + chr8.4:39604272-39604291 None:intergenic 45.0%
TGTTTGTGCATTGGGCTTGT+TGG - chr8.4:39604188-39604207 MS.gene64990:intron 45.0%
! CCATCATTTTCTTCATCGCC+TGG + chr8.4:39603880-39603899 None:intergenic 45.0%
! CGGAAATGATGGTGATGTAG+TGG - chr8.4:39604344-39604363 MS.gene64990:intron 45.0%
! TTTATAACAGGGGCACGAAG+CGG + chr8.4:39605577-39605596 None:intergenic 45.0%
! TTTTGGCAGTTTGGCAAGCA+AGG - chr8.4:39604272-39604291 MS.gene64990:CDS 45.0%
!! AAGAGTGCTTGTTGCGGTAA+AGG - chr8.4:39604431-39604450 MS.gene64990:intron 45.0%
!! AATTTTGGTCCCTCTCGAAG+CGG - chr8.4:39604835-39604854 MS.gene64990:intron 45.0%
!! ATCCTCAAGAGTGCTTGTTG+CGG - chr8.4:39604425-39604444 MS.gene64990:intron 45.0%
!! GGGCTTGTTGGAGTAATGAA+GGG - chr8.4:39604200-39604219 MS.gene64990:intron 45.0%
!! TGGGCTTGTTGGAGTAATGA+AGG - chr8.4:39604199-39604218 MS.gene64990:intron 45.0%
!! TTCTTGGAGGAAGGTGTCAT+AGG + chr8.4:39605267-39605286 None:intergenic 45.0%
!!! TTTTTTTTTTTTAGTATAAT+GGG - chr8.4:39604522-39604541 MS.gene64990:CDS 5.0%
!!! TTTTTTTTTTTTTAGTATAA+TGG - chr8.4:39604521-39604540 MS.gene64990:CDS 5.0%
AGCGGAAGCGGTTGAGAATA+GGG + chr8.4:39605410-39605429 None:intergenic 50.0%
AGGTTGTTTGCGTGAAGCCT+GGG - chr8.4:39604469-39604488 MS.gene64990:CDS 50.0%
GTAATTGTGCCAGTCGTCGT+CGG + chr8.4:39604042-39604061 None:intergenic 50.0%
TACCACTCGCGGCAAAGAAA+AGG + chr8.4:39604743-39604762 None:intergenic 50.0%
TACCGCAACAAGCACTCTTG+AGG + chr8.4:39604430-39604449 None:intergenic 50.0%
TAGCGGAAGCGGTTGAGAAT+AGG + chr8.4:39605411-39605430 None:intergenic 50.0%
TAGGTGCTCCGCCTATATAC+GGG - chr8.4:39604700-39604719 MS.gene64990:CDS 50.0%
TCACATGCTCCTACAGGTGA+TGG + chr8.4:39605823-39605842 None:intergenic 50.0%
TGACAGAGCCCTTTGGTACA+CGG + chr8.4:39606044-39606063 None:intergenic 50.0%
TGCAGTTCACATGCTCCTAC+AGG + chr8.4:39605829-39605848 None:intergenic 50.0%
! ATGTTTGGTTCCGCTTCGAG+AGG + chr8.4:39604848-39604867 None:intergenic 50.0%
! TGGTAGTGAGCTTAGTGCCT+TGG - chr8.4:39604627-39604646 MS.gene64990:CDS 50.0%
! TGGTGTGCCTTGTTGTCGAT+AGG - chr8.4:39605792-39605811 MS.gene64990:intron 50.0%
! TGTTTGGTTCCGCTTCGAGA+GGG + chr8.4:39604847-39604866 None:intergenic 50.0%
! TTCCTTTTCTTTGCCGCGAG+TGG - chr8.4:39604738-39604757 MS.gene64990:CDS 50.0%
! TTCGATTGCACCGACAAGAC+TGG + chr8.4:39605091-39605110 None:intergenic 50.0%
!! CTTGATGATGTGCACAGTCG+GGG - chr8.4:39605348-39605367 MS.gene64990:intron 50.0%
!! GCTTGATGATGTGCACAGTC+GGG - chr8.4:39605347-39605366 MS.gene64990:intron 50.0%
!! GGCTTGATGATGTGCACAGT+CGG - chr8.4:39605346-39605365 MS.gene64990:intron 50.0%
AATGGGGCAGCCAGAGAGAA+AGG + chr8.4:39605196-39605215 None:intergenic 55.0%
AGACCTGACGATGCTTCCAG+AGG + chr8.4:39604011-39604030 None:intergenic 55.0%
AGGTGCTCCGCCTATATACG+GGG - chr8.4:39604701-39604720 MS.gene64990:CDS 55.0%
CATTACCGGGACCTTGGTAG+CGG + chr8.4:39605428-39605447 None:intergenic 55.0%
CCTCTCGATCAAAACCGTCG+TGG - chr8.4:39603954-39603973 MS.gene64990:CDS 55.0%
GACAGAGCCCTTTGGTACAC+GGG + chr8.4:39606043-39606062 None:intergenic 55.0%
GAGGTTGTTTGCGTGAAGCC+TGG - chr8.4:39604468-39604487 MS.gene64990:CDS 55.0%
TGGCAAGTGACAGAGCCCTT+TGG + chr8.4:39606051-39606070 None:intergenic 55.0%
TGTGCACAGTCGGGGATCAT+TGG - chr8.4:39605356-39605375 MS.gene64990:intron 55.0%
TTCCACTTTCCGACGACGAC+TGG - chr8.4:39604030-39604049 MS.gene64990:CDS 55.0%
! TAGAGCTGGTGTTGAGGCGT+GGG - chr8.4:39604588-39604607 MS.gene64990:CDS 55.0%
! TGATGGTGATGTAGTGGCGG+TGG - chr8.4:39604350-39604369 MS.gene64990:intron 55.0%
! TTAGAGCTGGTGTTGAGGCG+TGG - chr8.4:39604587-39604606 MS.gene64990:CDS 55.0%
!! CCACGACGGTTTTGATCGAG+AGG + chr8.4:39603957-39603976 None:intergenic 55.0%
CCTGACGATGCTTCCAGAGG+TGG + chr8.4:39604008-39604027 None:intergenic 60.0%
CTCAACCGCTTCCGCTACCA+AGG - chr8.4:39605414-39605433 MS.gene64990:intron 60.0%
GCTCACTACCAATCCCAGCC+TGG + chr8.4:39604618-39604637 None:intergenic 60.0%
TGCCAGTCGTCGTCGGAAAG+TGG + chr8.4:39604035-39604054 None:intergenic 60.0%
TGGGTATGCCAGGCTGGGAT+TGG - chr8.4:39604607-39604626 MS.gene64990:CDS 60.0%
TGTTGAGGCGTGGGTATGCC+AGG - chr8.4:39604597-39604616 MS.gene64990:CDS 60.0%
!! CCACCTCTGGAAGCATCGTC+AGG - chr8.4:39604005-39604024 MS.gene64990:CDS 60.0%
AGGCGTGGGTATGCCAGGCT+GGG - chr8.4:39604602-39604621 MS.gene64990:CDS 65.0%
CGCTTCCGCTACCAAGGTCC+CGG - chr8.4:39605420-39605439 MS.gene64990:intron 65.0%
TTCGCAGATGGCGCCACCTC+TGG - chr8.4:39603992-39604011 MS.gene64990:CDS 65.0%
!! CGGGACCTTGGTAGCGGAAG+CGG + chr8.4:39605422-39605441 None:intergenic 65.0%
GAGGCGTGGGTATGCCAGGC+TGG - chr8.4:39604601-39604620 MS.gene64990:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 39603841 39606101 39603841 ID=MS.gene64990
chr8.4 mRNA 39603841 39606101 39603841 ID=MS.gene64990.t1;Parent=MS.gene64990
chr8.4 exon 39605876 39606101 39605876 ID=MS.gene64990.t1.exon1;Parent=MS.gene64990.t1
chr8.4 CDS 39605876 39606101 39605876 ID=cds.MS.gene64990.t1;Parent=MS.gene64990.t1
chr8.4 exon 39605294 39605351 39605294 ID=MS.gene64990.t1.exon2;Parent=MS.gene64990.t1
chr8.4 CDS 39605294 39605351 39605294 ID=cds.MS.gene64990.t1;Parent=MS.gene64990.t1
chr8.4 exon 39604460 39604850 39604460 ID=MS.gene64990.t1.exon3;Parent=MS.gene64990.t1
chr8.4 CDS 39604460 39604850 39604460 ID=cds.MS.gene64990.t1;Parent=MS.gene64990.t1
chr8.4 exon 39604236 39604337 39604236 ID=MS.gene64990.t1.exon4;Parent=MS.gene64990.t1
chr8.4 CDS 39604236 39604337 39604236 ID=cds.MS.gene64990.t1;Parent=MS.gene64990.t1
chr8.4 exon 39603841 39604128 39603841 ID=MS.gene64990.t1.exon5;Parent=MS.gene64990.t1
chr8.4 CDS 39603841 39604128 39603841 ID=cds.MS.gene64990.t1;Parent=MS.gene64990.t1
Gene Sequence

>MS.gene64990

ATGGCGGAGTCAAGCATGATAGCAAAACGACGGAAACCAGGCGATGAAGAAAATGATGGCACCGACATGATGAATATTTTACCGGAATCTATAGTTTGCCACATCCTATCATTCCTCTCGATCAAAACCGTCGTGGTGACGAGTCTTATTTTTCGCAGATGGCGCCACCTCTGGAAGCATCGTCAGGTCTTCCACTTTCCGACGACGACTGGCACAATTACAAAAGGTTCAAAAAAATTGCACGGAAGAATCGTCCAAACATATCTTCTTACATTGTAATTTCATGGTAAAGGTTTGGGAAAGTGTTATGAAATGGCTTGATTTCTCTTTCATTACTCCACCGAATTTGTTTGTGCATTGGGCTTGTTGGAGTAATGAAGGGAGAAATAAGAGGATTCGTAAGGGGTTGTCGATTATTTGGCATGCTACCATTTTGGCAGTTTGGCAAGCAAGGAATCACATTATTTTCCAGAATGAGGTGAAATATGTGGACGAATTATTACCGGAAATGATGGTGATGTAGTGGCGGTGGAGTTTGAGTAGAATTTCTATGCAAACTTGTTTATACTATGAGTGGAGTTGGAATCCTCAAGAGTGCTTGTTGCGGTAAAGGTTTTTGTTTGGCTAGAGGTTGTTTGCGTGAAGCCTGGGTGTATTCAATTATTTTTCGTAGCTGTGTTTTTTTTTTTTTTTAGTATAATGGGTTATTGATTTTTATATTGGAGTCTTTGGCGGTTTTTTGTTTTTTAGAGCTGGTGTTGAGGCGTGGGTATGCCAGGCTGGGATTGGTAGTGAGCTTAGTGCCTTGGTACTTTGTTTTAGTTTGAATCTTGTGGTTATTTGTTTGGTAGGTGTTTTATAGGTGCTCCGCCTATATACGGGGCATTTGTATGTATTTTCCTTTTCTTTGCCGCGAGTGGTACTGTTTTTAGTACTACTTGGCGTGAATAGTATTGGCCAATTCAAACATTTCATAATCAATTGTACCGGAATCAATTTTGGTCCCTCTCGAAGCGGAACCAAACATACACGTAGTATGTACTGTATATTTCGTATATTTTTGAACAAAAAAAATTTCTTTAGCTAATTAATATTTTTTTTATAGAATGAAATGAAAACAACGTATAATTTTGCCTTAATTTAACTTTGATCCTATGAAAATGGCAAGACCATAGATCAATAATATCCAAAAATTGTATTTAAGAATTTGTAGATAATGCTAACTTTCATGATTTCATCTAAATGCTCCAGTCTTGTCGGTGCAATCGAAATGAAAGTTCAACGTTCTTCAGTTCATTTTACATCACTCAAGTGGCTTAAACTCGACATATGCGTTATGGATTCAGACATTGCCTTTCTCTCTGGCTGCCCCATTCTCGAAACTTTGCATATTTACTTTGAGCCCAAATTTCTGACAAAAGTTCCTATGACACCTTCCTCCAAGAAGTTGAAATTCAACAATGGAAATTTCTCATGGACTTGCCTTAAAGTAGATTCCAATGATTGGCTTGATGATGTGCACAGTCGGGGATCATTGGCAACGTGCGTAGAGAGTGAATTTGTCGACCCTATTCTCAACCGCTTCCGCTACCAAGGTCCCGGTAATGAATTATATCTACTGCTGCGTCATTCAACAGAAAAGGTGAAGTTTTATTAATATGATTTATATGTATTTGTATAAATATTTTTGTATTAATATTATGCCATCACTTGTTATCATGTACAAGCAGTGGCCGCTTCGTGCCCCTGTTATAAATAATCCAGAATTTTCTAAAGTCCATCCTTCCCTGCTTCAATTTGAATCTTCTGGTCAACATTCTTGAGAAATGTCACATGCTTCAAGTTCTCATACTTCAAATCGACAAGGTTTGTTGACTTATCAAGTTTCATTCAATGGATGTTTGGTCTGTCTATTTAGATATTACTATAGTTAGTCTATACATGCAAGTCATGGTGTGCCTTGTTGTCGATAGGAAGAACCATCACCTGTAGGAGCATGTGAACTGCAATCACCAACAGTTCCTAAATGTCTTGAATCCCACCTCACCTATATTCACATAGAAGGATACCAAGGACTTGAAGAAGAGCTGACATTTGCTGAATATATTTTGTTGAACGGACTTGTTTTGAAGACAATGCTTATTTTTGTTGATATTTCAATGGACATAACGAACAAGTATCGTTCTCTCAAAAGGTTAACCCGTGTACCAAAGGGCTCTGTCACTTGCCAACTTGAATTTGATGCAGATGCGTCTCTTTAA

Protein sequence

>MS.gene64990.t1

MAESSMIAKRRKPGDEENDGTDMMNILPESIVCHILSFLSIKTVVVTSLIFRRWRHLWKHRQVFHFPTTTGTITKELVLRRGYARLGLVVSLVPCLVGAIEMKVQRSSVHFTSLKWLKLDICVMDSDIAFLSGCPILETLHIYFEPKFLTKVPMTPSSKKLKFNNGNFSWTCLKVDSNDWLDDVHSRGSLATCVESEFVDPILNRFRYQGPGNELYLLLRHSTEKNFLKSILPCFNLNLLVNILEKCHMLQVLILQIDKEEPSPVGACELQSPTVPKCLESHLTYIHIEGYQGLEEELTFAEYILLNGLVLKTMLIFVDISMDITNKYRSLKRLTRVPKGSVTCQLEFDADASL