Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64990.t1 | RHN60394.1 | 42.9 | 478 | 139 | 11 | 6 | 353 | 5 | 478 | 1.50E-84 | 323.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64990.t1 | Q9FM89 | 33.0 | 112 | 75 | 0 | 238 | 349 | 311 | 422 | 2.6e-08 | 61.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64990.t1 | A0A396I823 | 42.9 | 478 | 139 | 11 | 6 | 353 | 5 | 478 | 1.1e-84 | 323.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64990.t1 | MTR_8g469020 | 40.749 | 454 | 144 | 12 | 21 | 353 | 6 | 455 | 1.95e-90 | 278 |
MS.gene64990.t1 | MTR_8g058965 | 41.176 | 459 | 148 | 12 | 15 | 353 | 4 | 460 | 2.71e-86 | 268 |
MS.gene64990.t1 | MTR_8g062310 | 43.066 | 411 | 152 | 9 | 22 | 353 | 25 | 432 | 6.24e-85 | 264 |
MS.gene64990.t1 | MTR_8g070950 | 43.207 | 449 | 148 | 12 | 1 | 353 | 1 | 438 | 9.84e-85 | 263 |
MS.gene64990.t1 | MTR_8g062080 | 40.481 | 457 | 160 | 16 | 1 | 353 | 1 | 449 | 6.43e-79 | 249 |
MS.gene64990.t1 | MTR_8g062300 | 48.197 | 305 | 107 | 7 | 96 | 353 | 181 | 481 | 1.33e-72 | 233 |
MS.gene64990.t1 | MTR_8g062010 | 50.714 | 280 | 106 | 5 | 105 | 354 | 158 | 435 | 7.17e-72 | 230 |
MS.gene64990.t1 | MTR_4g050250 | 48.638 | 257 | 71 | 7 | 96 | 295 | 168 | 420 | 8.47e-64 | 209 |
MS.gene64990.t1 | MTR_4g050250 | 36.000 | 100 | 62 | 2 | 6 | 103 | 5 | 104 | 1.41e-12 | 68.9 |
MS.gene64990.t1 | MTR_2g086020 | 69.167 | 120 | 37 | 0 | 234 | 353 | 200 | 319 | 5.14e-50 | 170 |
MS.gene64990.t1 | MTR_8g467790 | 37.466 | 363 | 149 | 11 | 22 | 309 | 148 | 507 | 7.95e-47 | 166 |
MS.gene64990.t1 | MTR_2g083840 | 33.038 | 451 | 189 | 15 | 9 | 349 | 10 | 457 | 1.00e-39 | 146 |
MS.gene64990.t1 | MTR_8g014260 | 36.213 | 301 | 147 | 10 | 89 | 349 | 156 | 451 | 4.93e-38 | 141 |
MS.gene64990.t1 | MTR_8g058970 | 34.740 | 308 | 150 | 8 | 89 | 349 | 174 | 477 | 5.94e-35 | 133 |
MS.gene64990.t1 | MTR_8g058970 | 53.731 | 67 | 27 | 2 | 1 | 66 | 1 | 64 | 3.78e-13 | 70.5 |
MS.gene64990.t1 | MTR_8g014160 | 29.602 | 402 | 208 | 14 | 14 | 349 | 33 | 425 | 6.29e-34 | 130 |
MS.gene64990.t1 | MTR_4g024710 | 33.645 | 321 | 163 | 12 | 69 | 349 | 37 | 347 | 3.58e-31 | 120 |
MS.gene64990.t1 | MTR_8g468810 | 35.235 | 298 | 147 | 11 | 96 | 349 | 168 | 463 | 5.69e-31 | 122 |
MS.gene64990.t1 | MTR_8g468810 | 54.795 | 73 | 23 | 3 | 1 | 66 | 1 | 70 | 1.36e-13 | 72.0 |
MS.gene64990.t1 | MTR_8g077460 | 35.798 | 257 | 125 | 10 | 96 | 349 | 156 | 375 | 7.24e-29 | 115 |
MS.gene64990.t1 | MTR_8g014210 | 50.877 | 114 | 53 | 2 | 236 | 349 | 121 | 231 | 7.34e-29 | 112 |
MS.gene64990.t1 | MTR_8g467800 | 33.657 | 309 | 144 | 11 | 98 | 353 | 157 | 457 | 2.91e-28 | 114 |
MS.gene64990.t1 | MTR_8g467800 | 51.562 | 64 | 28 | 1 | 6 | 66 | 1 | 64 | 2.79e-11 | 64.7 |
MS.gene64990.t1 | MTR_5g092960 | 31.734 | 271 | 135 | 6 | 124 | 348 | 195 | 461 | 1.21e-25 | 107 |
MS.gene64990.t1 | MTR_3g099800 | 59.770 | 87 | 34 | 1 | 261 | 346 | 19 | 105 | 4.93e-25 | 97.8 |
MS.gene64990.t1 | MTR_8g062270 | 33.462 | 260 | 124 | 10 | 131 | 348 | 201 | 453 | 1.69e-22 | 98.6 |
MS.gene64990.t1 | MTR_8g468840 | 32.549 | 255 | 132 | 7 | 130 | 347 | 197 | 448 | 3.32e-20 | 91.7 |
MS.gene64990.t1 | MTR_8g468760 | 32.624 | 282 | 142 | 9 | 96 | 348 | 156 | 418 | 1.74e-19 | 89.4 |
MS.gene64990.t1 | MTR_4g032730 | 30.351 | 313 | 152 | 13 | 96 | 348 | 160 | 466 | 1.76e-19 | 89.7 |
MS.gene64990.t1 | MTR_8g014230 | 47.619 | 84 | 42 | 2 | 259 | 342 | 17 | 98 | 5.38e-18 | 79.0 |
MS.gene64990.t1 | MTR_4g024745 | 31.047 | 277 | 146 | 10 | 96 | 332 | 13 | 284 | 1.33e-17 | 82.4 |
MS.gene64990.t1 | MTR_8g445780 | 30.453 | 243 | 131 | 7 | 96 | 302 | 150 | 390 | 5.54e-17 | 81.6 |
MS.gene64990.t1 | MTR_1g041245 | 40.351 | 114 | 64 | 2 | 239 | 349 | 274 | 386 | 6.68e-15 | 75.5 |
MS.gene64990.t1 | MTR_7g098510 | 38.182 | 110 | 68 | 0 | 240 | 349 | 282 | 391 | 6.84e-15 | 75.5 |
MS.gene64990.t1 | MTR_8g468810 | 54.795 | 73 | 23 | 3 | 1 | 66 | 1 | 70 | 4.61e-14 | 72.4 |
MS.gene64990.t1 | MTR_8g468810 | 54.795 | 73 | 23 | 3 | 1 | 66 | 1 | 70 | 5.00e-14 | 72.4 |
MS.gene64990.t1 | MTR_8g468810 | 54.795 | 73 | 23 | 3 | 1 | 66 | 1 | 70 | 6.92e-14 | 72.4 |
MS.gene64990.t1 | MTR_8g468810 | 54.795 | 73 | 23 | 3 | 1 | 66 | 1 | 70 | 8.45e-14 | 72.0 |
MS.gene64990.t1 | MTR_7g032380 | 35.135 | 111 | 70 | 2 | 240 | 349 | 247 | 356 | 3.22e-13 | 70.5 |
MS.gene64990.t1 | MTR_4g024770 | 47.143 | 70 | 32 | 2 | 1 | 70 | 8 | 72 | 4.13e-13 | 64.3 |
MS.gene64990.t1 | MTR_7g032370 | 35.135 | 111 | 70 | 2 | 240 | 349 | 243 | 352 | 1.18e-12 | 68.6 |
MS.gene64990.t1 | MTR_7g098570 | 34.906 | 106 | 69 | 0 | 240 | 345 | 284 | 389 | 1.15e-11 | 66.2 |
MS.gene64990.t1 | MTR_7g098480 | 34.862 | 109 | 71 | 0 | 240 | 348 | 280 | 388 | 1.81e-11 | 65.5 |
MS.gene64990.t1 | MTR_8g467800 | 51.562 | 64 | 28 | 1 | 6 | 66 | 1 | 64 | 1.94e-11 | 64.7 |
MS.gene64990.t1 | MTR_5g021550 | 50.820 | 61 | 26 | 2 | 8 | 66 | 5 | 63 | 1.99e-11 | 62.0 |
MS.gene64990.t1 | MTR_3g115430 | 40.789 | 76 | 42 | 1 | 274 | 349 | 53 | 125 | 2.44e-11 | 60.8 |
MS.gene64990.t1 | MTR_8g014180 | 49.206 | 63 | 27 | 2 | 1 | 63 | 1 | 58 | 2.84e-11 | 58.9 |
MS.gene64990.t1 | MTR_1g108820 | 25.495 | 404 | 206 | 15 | 16 | 346 | 2 | 383 | 3.49e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 80 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATGCAGATGCGTCTCTTTA+AGG | 0.126646 | 8.4:-39603839 | None:intergenic |
CTGCTTCAATTTGAATCTTC+TGG | 0.185760 | 8.4:-39604292 | MS.gene64990:CDS |
ATTGTTGAATTTCAACTTCT+TGG | 0.196663 | 8.4:+39604640 | None:intergenic |
AATCATTGGAATCTACTTTA+AGG | 0.201592 | 8.4:+39604597 | None:intergenic |
AGGTGGGATTCAAGACATTT+AGG | 0.296428 | 8.4:+39604058 | None:intergenic |
GAGGCGTGGGTATGCCAGGC+TGG | 0.335962 | 8.4:-39605319 | MS.gene64990:CDS |
TCAGACATTGCCTTTCTCTC+TGG | 0.356495 | 8.4:-39604737 | MS.gene64990:CDS |
TAAACTCGACATATGCGTTA+TGG | 0.382182 | 8.4:-39604762 | MS.gene64990:CDS |
TTAAAGTAGATTCCAATGAT+TGG | 0.382239 | 8.4:-39604595 | MS.gene64990:CDS |
GTATCCTTCTATGTGAATAT+AGG | 0.383394 | 8.4:+39604033 | None:intergenic |
AGCGGAAGCGGTTGAGAATA+GGG | 0.403075 | 8.4:+39604513 | None:intergenic |
CACATCATCAAGCCAATCAT+TGG | 0.407241 | 8.4:+39604583 | None:intergenic |
TAGCGGAAGCGGTTGAGAAT+AGG | 0.408721 | 8.4:+39604512 | None:intergenic |
CTCACCTATATTCACATAGA+AGG | 0.412719 | 8.4:-39604037 | MS.gene64990:CDS |
CAGTAGATATAATTCATTAC+CGG | 0.417944 | 8.4:+39604481 | None:intergenic |
TTCGCAGATGGCGCCACCTC+TGG | 0.419656 | 8.4:-39605928 | MS.gene64990:CDS |
TGGGTATGCCAGGCTGGGAT+TGG | 0.422480 | 8.4:-39605313 | MS.gene64990:CDS |
CCACCTCTGGAAGCATCGTC+AGG | 0.424773 | 8.4:-39605915 | MS.gene64990:CDS |
ATATGCAAAGTTTCGAGAAT+GGG | 0.428394 | 8.4:+39604710 | None:intergenic |
TTCCACTTTCCGACGACGAC+TGG | 0.440235 | 8.4:-39605890 | MS.gene64990:CDS |
CGGGACCTTGGTAGCGGAAG+CGG | 0.448312 | 8.4:+39604501 | None:intergenic |
TGTGCACAGTCGGGGATCAT+TGG | 0.454052 | 8.4:-39604564 | MS.gene64990:CDS |
TCTAAATGCTCCAGTCTTGT+CGG | 0.455505 | 8.4:-39604842 | MS.gene64990:intron |
TCAGCTCTTCTTCAAGTCCT+TGG | 0.472411 | 8.4:+39604011 | None:intergenic |
TAGAGCTGGTGTTGAGGCGT+GGG | 0.474099 | 8.4:-39605332 | MS.gene64990:CDS |
ACAAGTATCGTTCTCTCAAA+AGG | 0.474341 | 8.4:-39603907 | MS.gene64990:CDS |
AATGGGGCAGCCAGAGAGAA+AGG | 0.477378 | 8.4:+39604727 | None:intergenic |
TTCTTGGAGGAAGGTGTCAT+AGG | 0.479457 | 8.4:+39604656 | None:intergenic |
AATATGCAAAGTTTCGAGAA+TGG | 0.481050 | 8.4:+39604709 | None:intergenic |
CAGAAGATTCAAATTGAAGC+AGG | 0.483032 | 8.4:+39604293 | None:intergenic |
TGTTGAGGCGTGGGTATGCC+AGG | 0.485290 | 8.4:-39605323 | MS.gene64990:CDS |
TGGTAGTGAGCTTAGTGCCT+TGG | 0.485394 | 8.4:-39605293 | MS.gene64990:intron |
TCAAGACATTTAGGAACTGT+TGG | 0.486800 | 8.4:+39604067 | None:intergenic |
TGCAGTTCACATGCTCCTAC+AGG | 0.488894 | 8.4:+39604094 | None:intergenic |
TCAACAATGGAAATTTCTCA+TGG | 0.492414 | 8.4:-39604625 | MS.gene64990:CDS |
GCTTGATGATGTGCACAGTC+GGG | 0.498176 | 8.4:-39604573 | MS.gene64990:CDS |
GTTGAATTTCAACTTCTTGG+AGG | 0.501300 | 8.4:+39604643 | None:intergenic |
AGGCGTGGGTATGCCAGGCT+GGG | 0.503559 | 8.4:-39605318 | MS.gene64990:CDS |
ATGTGGCAAACTATAGATTC+CGG | 0.504585 | 8.4:+39605998 | None:intergenic |
TGGCAAGTGACAGAGCCCTT+TGG | 0.506776 | 8.4:+39603872 | None:intergenic |
TGCCAGTCGTCGTCGGAAAG+TGG | 0.512153 | 8.4:+39605888 | None:intergenic |
AATTTCAACTTCTTGGAGGA+AGG | 0.518051 | 8.4:+39604647 | None:intergenic |
GGCTTGATGATGTGCACAGT+CGG | 0.522089 | 8.4:-39604574 | MS.gene64990:CDS |
ATAATTCATTACCGGGACCT+TGG | 0.531008 | 8.4:+39604489 | None:intergenic |
TTAGAGCTGGTGTTGAGGCG+TGG | 0.532571 | 8.4:-39605333 | MS.gene64990:intron |
CGCTTCCGCTACCAAGGTCC+CGG | 0.534639 | 8.4:-39604500 | MS.gene64990:CDS |
GCTGCGTCATTCAACAGAAA+AGG | 0.536020 | 8.4:-39604459 | MS.gene64990:intron |
CATTACCGGGACCTTGGTAG+CGG | 0.540771 | 8.4:+39604495 | None:intergenic |
CAAATTGAAGCAGGGAAGGA+TGG | 0.548228 | 8.4:+39604302 | None:intergenic |
ACGACTGGCACAATTACAAA+AGG | 0.548744 | 8.4:-39605875 | MS.gene64990:intron |
ATAGCAAAACGACGGAAACC+AGG | 0.549220 | 8.4:-39606061 | MS.gene64990:CDS |
GCTCACTACCAATCCCAGCC+TGG | 0.550269 | 8.4:+39605305 | None:intergenic |
AAGGTTAACCCGTGTACCAA+AGG | 0.550537 | 8.4:-39603888 | MS.gene64990:CDS |
GACAGAGCCCTTTGGTACAC+GGG | 0.555027 | 8.4:+39603880 | None:intergenic |
GTAATTGTGCCAGTCGTCGT+CGG | 0.555951 | 8.4:+39605881 | None:intergenic |
GATTCAAATTGAAGCAGGGA+AGG | 0.558902 | 8.4:+39604298 | None:intergenic |
AGGTTAACCCGTGTACCAAA+GGG | 0.564649 | 8.4:-39603887 | MS.gene64990:CDS |
TGACAGAGCCCTTTGGTACA+CGG | 0.565716 | 8.4:+39603879 | None:intergenic |
CTATGTGAATATAGGTGAGG+TGG | 0.567193 | 8.4:+39604041 | None:intergenic |
CATCTGCATCAAATTCAAGT+TGG | 0.574506 | 8.4:+39603852 | None:intergenic |
CCTGACGATGCTTCCAGAGG+TGG | 0.576607 | 8.4:+39605915 | None:intergenic |
TCGAGAGGAATGATAGGATG+TGG | 0.583121 | 8.4:+39605981 | None:intergenic |
TCACATGCTCCTACAGGTGA+TGG | 0.586202 | 8.4:+39604100 | None:intergenic |
TATGTGAATATAGGTGAGGT+GGG | 0.599772 | 8.4:+39604042 | None:intergenic |
CTCAACCGCTTCCGCTACCA+AGG | 0.603903 | 8.4:-39604506 | MS.gene64990:CDS |
CGGTAAAATATTCATCATGT+CGG | 0.604834 | 8.4:+39606018 | None:intergenic |
TATGCAAAGTTTCGAGAATG+GGG | 0.608254 | 8.4:+39604711 | None:intergenic |
CCAGGCGATGAAGAAAATGA+TGG | 0.613505 | 8.4:-39606043 | MS.gene64990:CDS |
AGAAGATTCAAATTGAAGCA+GGG | 0.625615 | 8.4:+39604294 | None:intergenic |
AAGAAGTTGAAATTCAACAA+TGG | 0.632882 | 8.4:-39604638 | MS.gene64990:CDS |
TAGGAAGAACCATCACCTGT+AGG | 0.643014 | 8.4:-39604109 | MS.gene64990:CDS |
AGTAGATATAATTCATTACC+GGG | 0.645260 | 8.4:+39604482 | None:intergenic |
TCTCATACTTCAAATCGACA+AGG | 0.646252 | 8.4:-39604235 | MS.gene64990:intron |
CTTCTATGTGAATATAGGTG+AGG | 0.646334 | 8.4:+39604038 | None:intergenic |
CTTGATGATGTGCACAGTCG+GGG | 0.650613 | 8.4:-39604572 | MS.gene64990:CDS |
AATAAGACTCGTCACCACGA+CGG | 0.659516 | 8.4:+39605952 | None:intergenic |
AGACCTGACGATGCTTCCAG+AGG | 0.676435 | 8.4:+39605912 | None:intergenic |
ATTCACATAGAAGGATACCA+AGG | 0.680294 | 8.4:-39604028 | MS.gene64990:CDS |
CAAGCATGATAGCAAAACGA+CGG | 0.696903 | 8.4:-39606069 | MS.gene64990:CDS |
CCTCTCGATCAAAACCGTCG+TGG | 0.715415 | 8.4:-39605966 | MS.gene64990:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTCTTAAATACAATTTT+TGG | + | chr8.4:39605030-39605049 | None:intergenic | 10.0% |
!!! | TATTTTTGTTGATATTTCAA+TGG | - | chr8.4:39605981-39606000 | MS.gene64990:CDS | 15.0% |
!! | AATTCTGGATTATTTATAAC+AGG | + | chr8.4:39605589-39605608 | None:intergenic | 20.0% |
!! | ATAGGATCAAAGTTAAATTA+AGG | + | chr8.4:39604977-39604996 | None:intergenic | 20.0% |
!! | ATTCTGGATTATTTATAACA+GGG | + | chr8.4:39605588-39605607 | None:intergenic | 20.0% |
!! | TGATTATGAAATGTTTGAAT+TGG | + | chr8.4:39604801-39604820 | None:intergenic | 20.0% |
!!! | TGGGTTATTGATTTTTATAT+TGG | - | chr8.4:39604541-39604560 | MS.gene64990:CDS | 20.0% |
!!! | TTTTGGATATTATTGATCTA+TGG | + | chr8.4:39605013-39605032 | None:intergenic | 20.0% |
! | AAAAATAATTGAATACACCC+AGG | + | chr8.4:39604489-39604508 | None:intergenic | 25.0% |
! | AAAGGTTCAAAAAAATTGCA+CGG | - | chr8.4:39604063-39604082 | MS.gene64990:CDS | 25.0% |
! | AAGAAGTTGAAATTCAACAA+TGG | - | chr8.4:39605282-39605301 | MS.gene64990:intron | 25.0% |
! | AATCATTGGAATCTACTTTA+AGG | + | chr8.4:39605326-39605345 | None:intergenic | 25.0% |
! | ACAATGTAAGAAGATATGTT+TGG | + | chr8.4:39604098-39604117 | None:intergenic | 25.0% |
! | ACATTGTAATTTCATGGTAA+AGG | - | chr8.4:39604111-39604130 | MS.gene64990:intron | 25.0% |
! | ACTTATCAAGTTTCATTCAA+TGG | - | chr8.4:39605715-39605734 | MS.gene64990:intron | 25.0% |
! | AGTAGATATAATTCATTACC+GGG | + | chr8.4:39605441-39605460 | None:intergenic | 25.0% |
! | ATTGTTGAATTTCAACTTCT+TGG | + | chr8.4:39605283-39605302 | None:intergenic | 25.0% |
! | CAGTAGATATAATTCATTAC+CGG | + | chr8.4:39605442-39605461 | None:intergenic | 25.0% |
! | CATTTCATAATCAATTGTAC+CGG | - | chr8.4:39604808-39604827 | MS.gene64990:CDS | 25.0% |
! | CTTCTTACATTGTAATTTCA+TGG | - | chr8.4:39604105-39604124 | MS.gene64990:CDS | 25.0% |
! | TAACTTTGATCCTATGAAAA+TGG | - | chr8.4:39604982-39605001 | MS.gene64990:intron | 25.0% |
! | TAATTTCATGGTAAAGGTTT+GGG | - | chr8.4:39604117-39604136 | MS.gene64990:intron | 25.0% |
! | TTAAAGTAGATTCCAATGAT+TGG | - | chr8.4:39605325-39605344 | MS.gene64990:CDS | 25.0% |
! | TTCTGGATTATTTATAACAG+GGG | + | chr8.4:39605587-39605606 | None:intergenic | 25.0% |
!! | AAACTTGTTTATACTATGAG+TGG | - | chr8.4:39604395-39604414 | MS.gene64990:intron | 25.0% |
!! | GATTTTTATATTGGAGTCTT+TGG | - | chr8.4:39604550-39604569 | MS.gene64990:CDS | 25.0% |
!! | GCTGAATATATTTTGTTGAA+CGG | - | chr8.4:39605937-39605956 | MS.gene64990:CDS | 25.0% |
!!! | TTGTTTTAGTTTGAATCTTG+TGG | - | chr8.4:39604654-39604673 | MS.gene64990:CDS | 25.0% |
AATATGCAAAGTTTCGAGAA+TGG | + | chr8.4:39605214-39605233 | None:intergenic | 30.0% | |
AGAAATAAGAGGATTCGTAA+GGG | - | chr8.4:39604223-39604242 | MS.gene64990:intron | 30.0% | |
AGAAGATTCAAATTGAAGCA+GGG | + | chr8.4:39605629-39605648 | None:intergenic | 30.0% | |
AGTTTCATTCAATGGATGTT+TGG | - | chr8.4:39605723-39605742 | MS.gene64990:intron | 30.0% | |
ATATGCAAAGTTTCGAGAAT+GGG | + | chr8.4:39605213-39605232 | None:intergenic | 30.0% | |
ATATGTGGACGAATTATTAC+CGG | - | chr8.4:39604324-39604343 | MS.gene64990:intron | 30.0% | |
CGGTAAAATATTCATCATGT+CGG | + | chr8.4:39603905-39603924 | None:intergenic | 30.0% | |
GAATCTTGTGGTTATTTGTT+TGG | - | chr8.4:39604666-39604685 | MS.gene64990:CDS | 30.0% | |
GTAATTTCATGGTAAAGGTT+TGG | - | chr8.4:39604116-39604135 | MS.gene64990:intron | 30.0% | |
GTATCCTTCTATGTGAATAT+AGG | + | chr8.4:39605890-39605909 | None:intergenic | 30.0% | |
TCAACAATGGAAATTTCTCA+TGG | - | chr8.4:39605295-39605314 | MS.gene64990:CDS | 30.0% | |
TTGTACATGATAACAAGTGA+TGG | + | chr8.4:39605547-39605566 | None:intergenic | 30.0% | |
! | AATTGTACCGGAATCAATTT+TGG | - | chr8.4:39604820-39604839 | MS.gene64990:CDS | 30.0% |
! | AGGAACTTTTGTCAGAAATT+TGG | + | chr8.4:39605247-39605266 | None:intergenic | 30.0% |
! | CAAACTAAAACAAAGTACCA+AGG | + | chr8.4:39604647-39604666 | None:intergenic | 30.0% |
! | CGACATGATGAATATTTTAC+CGG | - | chr8.4:39603903-39603922 | MS.gene64990:CDS | 30.0% |
! | GGAACTTTTGTCAGAAATTT+GGG | + | chr8.4:39605246-39605265 | None:intergenic | 30.0% |
! | TCACATTATTTTCCAGAATG+AGG | - | chr8.4:39604297-39604316 | MS.gene64990:CDS | 30.0% |
! | TTCATTTTACATCACTCAAG+TGG | - | chr8.4:39605133-39605152 | MS.gene64990:intron | 30.0% |
! | TTGTTTGGTAGGTGTTTTAT+AGG | - | chr8.4:39604681-39604700 | MS.gene64990:CDS | 30.0% |
! | TTTTATATTGGAGTCTTTGG+CGG | - | chr8.4:39604553-39604572 | MS.gene64990:CDS | 30.0% |
!! | TTTGGGAAAGTGTTATGAAA+TGG | - | chr8.4:39604134-39604153 | MS.gene64990:intron | 30.0% |
!!! | GGTTTTTTGTTTTTTAGAGC+TGG | - | chr8.4:39604574-39604593 | MS.gene64990:CDS | 30.0% |
!!! | GTACTGTTTTTAGTACTACT+TGG | - | chr8.4:39604760-39604779 | MS.gene64990:CDS | 30.0% |
AATTTCAACTTCTTGGAGGA+AGG | + | chr8.4:39605276-39605295 | None:intergenic | 35.0% | |
ATGTGGCAAACTATAGATTC+CGG | + | chr8.4:39603925-39603944 | None:intergenic | 35.0% | |
ATTCACATAGAAGGATACCA+AGG | - | chr8.4:39605892-39605911 | MS.gene64990:CDS | 35.0% | |
CAGAAGATTCAAATTGAAGC+AGG | + | chr8.4:39605630-39605649 | None:intergenic | 35.0% | |
CATCTGCATCAAATTCAAGT+TGG | + | chr8.4:39606071-39606090 | None:intergenic | 35.0% | |
CGAATTATTACCGGAAATGA+TGG | - | chr8.4:39604333-39604352 | MS.gene64990:intron | 35.0% | |
CTCACCTATATTCACATAGA+AGG | - | chr8.4:39605883-39605902 | MS.gene64990:CDS | 35.0% | |
CTGCTTCAATTTGAATCTTC+TGG | - | chr8.4:39605628-39605647 | MS.gene64990:intron | 35.0% | |
CTTCTATGTGAATATAGGTG+AGG | + | chr8.4:39605885-39605904 | None:intergenic | 35.0% | |
CTTGTGGTTATTTGTTTGGT+AGG | - | chr8.4:39604670-39604689 | MS.gene64990:CDS | 35.0% | |
GAAATAAGAGGATTCGTAAG+GGG | - | chr8.4:39604224-39604243 | MS.gene64990:intron | 35.0% | |
GAGAAATAAGAGGATTCGTA+AGG | - | chr8.4:39604222-39604241 | MS.gene64990:intron | 35.0% | |
GTAATGAAGGGAGAAATAAG+AGG | - | chr8.4:39604212-39604231 | MS.gene64990:intron | 35.0% | |
GTACATACTACGTGTATGTT+TGG | + | chr8.4:39604863-39604882 | None:intergenic | 35.0% | |
GTTGAATTTCAACTTCTTGG+AGG | + | chr8.4:39605280-39605299 | None:intergenic | 35.0% | |
GTTTATACTATGAGTGGAGT+TGG | - | chr8.4:39604401-39604420 | MS.gene64990:intron | 35.0% | |
TAAACTCGACATATGCGTTA+TGG | - | chr8.4:39605158-39605177 | MS.gene64990:intron | 35.0% | |
TAGTCTATACATGCAAGTCA+TGG | - | chr8.4:39605772-39605791 | MS.gene64990:intron | 35.0% | |
TATGCAAAGTTTCGAGAATG+GGG | + | chr8.4:39605212-39605231 | None:intergenic | 35.0% | |
TATGTGAATATAGGTGAGGT+GGG | + | chr8.4:39605881-39605900 | None:intergenic | 35.0% | |
TCAAGACATTTAGGAACTGT+TGG | + | chr8.4:39605856-39605875 | None:intergenic | 35.0% | |
TCTCATACTTCAAATCGACA+AGG | - | chr8.4:39605685-39605704 | MS.gene64990:intron | 35.0% | |
TTGTTATCATGTACAAGCAG+TGG | - | chr8.4:39605551-39605570 | MS.gene64990:intron | 35.0% | |
! | ACAAGTATCGTTCTCTCAAA+AGG | - | chr8.4:39606013-39606032 | MS.gene64990:CDS | 35.0% |
! | ACCGAATTTGTTTGTGCATT+GGG | - | chr8.4:39604180-39604199 | MS.gene64990:intron | 35.0% |
! | GGATGGACTTTAGAAAATTC+TGG | + | chr8.4:39605604-39605623 | None:intergenic | 35.0% |
! | TATTTGGCATGCTACCATTT+TGG | - | chr8.4:39604255-39604274 | MS.gene64990:CDS | 35.0% |
! | TTGCGGTAAAGGTTTTTGTT+TGG | - | chr8.4:39604442-39604461 | MS.gene64990:intron | 35.0% |
! | TTTTGATCGAGAGGAATGAT+AGG | + | chr8.4:39603948-39603967 | None:intergenic | 35.0% |
!! | AAAGGTTTTTGTTTGGCTAG+AGG | - | chr8.4:39604449-39604468 | MS.gene64990:intron | 35.0% |
!!! | TATGGTCTTGCCATTTTCAT+AGG | + | chr8.4:39604995-39605014 | None:intergenic | 35.0% |
ACGACTGGCACAATTACAAA+AGG | - | chr8.4:39604045-39604064 | MS.gene64990:CDS | 40.0% | |
ACTAAAAACAGTACCACTCG+CGG | + | chr8.4:39604754-39604773 | None:intergenic | 40.0% | |
AGGTGGGATTCAAGACATTT+AGG | + | chr8.4:39605865-39605884 | None:intergenic | 40.0% | |
ATAATTCATTACCGGGACCT+TGG | + | chr8.4:39605434-39605453 | None:intergenic | 40.0% | |
CAAGCATGATAGCAAAACGA+CGG | - | chr8.4:39603851-39603870 | MS.gene64990:CDS | 40.0% | |
CAATGCACAAACAAATTCGG+TGG | + | chr8.4:39604181-39604200 | None:intergenic | 40.0% | |
CACATCATCAAGCCAATCAT+TGG | + | chr8.4:39605340-39605359 | None:intergenic | 40.0% | |
CACTACATCACCATCATTTC+CGG | + | chr8.4:39604346-39604365 | None:intergenic | 40.0% | |
CATACAAATGCCCCGTATAT+AGG | + | chr8.4:39604714-39604733 | None:intergenic | 40.0% | |
CCACATATTTCACCTCATTC+TGG | + | chr8.4:39604312-39604331 | None:intergenic | 40.0% | |
CCAGAATGAGGTGAAATATG+TGG | - | chr8.4:39604309-39604328 | MS.gene64990:CDS | 40.0% | |
CTACTTGGCGTGAATAGTAT+TGG | - | chr8.4:39604775-39604794 | MS.gene64990:CDS | 40.0% | |
CTATGTGAATATAGGTGAGG+TGG | + | chr8.4:39605882-39605901 | None:intergenic | 40.0% | |
GATTCAAATTGAAGCAGGGA+AGG | + | chr8.4:39605625-39605644 | None:intergenic | 40.0% | |
GCCCAATGCACAAACAAATT+CGG | + | chr8.4:39604184-39604203 | None:intergenic | 40.0% | |
! | AAATGATGGTGATGTAGTGG+CGG | - | chr8.4:39604347-39604366 | MS.gene64990:intron | 40.0% |
! | AGAGGGACCAAAATTGATTC+CGG | + | chr8.4:39604830-39604849 | None:intergenic | 40.0% |
! | CACCGAATTTGTTTGTGCAT+TGG | - | chr8.4:39604179-39604198 | MS.gene64990:intron | 40.0% |
! | GTAAGGGGTTGTCGATTATT+TGG | - | chr8.4:39604239-39604258 | MS.gene64990:CDS | 40.0% |
! | TCTAAATGCTCCAGTCTTGT+CGG | - | chr8.4:39605078-39605097 | MS.gene64990:intron | 40.0% |
!! | ATGCTACCATTTTGGCAGTT+TGG | - | chr8.4:39604263-39604282 | MS.gene64990:CDS | 40.0% |
!!! | CGAGTCTTATTTTTCGCAGA+TGG | - | chr8.4:39603980-39603999 | MS.gene64990:CDS | 40.0% |
!!! | GTTTTTTAGAGCTGGTGTTG+AGG | - | chr8.4:39604582-39604601 | MS.gene64990:CDS | 40.0% |
AAGGTTAACCCGTGTACCAA+AGG | - | chr8.4:39606032-39606051 | MS.gene64990:CDS | 45.0% | |
AATAAGACTCGTCACCACGA+CGG | + | chr8.4:39603971-39603990 | None:intergenic | 45.0% | |
ACAAATGCCCCGTATATAGG+CGG | + | chr8.4:39604711-39604730 | None:intergenic | 45.0% | |
AGGTTAACCCGTGTACCAAA+GGG | - | chr8.4:39606033-39606052 | MS.gene64990:CDS | 45.0% | |
ATAGCAAAACGACGGAAACC+AGG | - | chr8.4:39603859-39603878 | MS.gene64990:CDS | 45.0% | |
ATAGGTGCTCCGCCTATATA+CGG | - | chr8.4:39604699-39604718 | MS.gene64990:CDS | 45.0% | |
CAAATTGAAGCAGGGAAGGA+TGG | + | chr8.4:39605621-39605640 | None:intergenic | 45.0% | |
CCAGGCGATGAAGAAAATGA+TGG | - | chr8.4:39603877-39603896 | MS.gene64990:CDS | 45.0% | |
GCTGCGTCATTCAACAGAAA+AGG | - | chr8.4:39605461-39605480 | MS.gene64990:intron | 45.0% | |
GGTTCTTCCTATCGACAACA+AGG | + | chr8.4:39605802-39605821 | None:intergenic | 45.0% | |
TAGGAAGAACCATCACCTGT+AGG | - | chr8.4:39605811-39605830 | MS.gene64990:intron | 45.0% | |
TCAGACATTGCCTTTCTCTC+TGG | - | chr8.4:39605183-39605202 | MS.gene64990:intron | 45.0% | |
TCAGCTCTTCTTCAAGTCCT+TGG | + | chr8.4:39605912-39605931 | None:intergenic | 45.0% | |
TCGAGAGGAATGATAGGATG+TGG | + | chr8.4:39603942-39603961 | None:intergenic | 45.0% | |
TGCTTGCCAAACTGCCAAAA+TGG | + | chr8.4:39604272-39604291 | None:intergenic | 45.0% | |
TGTTTGTGCATTGGGCTTGT+TGG | - | chr8.4:39604188-39604207 | MS.gene64990:intron | 45.0% | |
! | CCATCATTTTCTTCATCGCC+TGG | + | chr8.4:39603880-39603899 | None:intergenic | 45.0% |
! | CGGAAATGATGGTGATGTAG+TGG | - | chr8.4:39604344-39604363 | MS.gene64990:intron | 45.0% |
! | TTTATAACAGGGGCACGAAG+CGG | + | chr8.4:39605577-39605596 | None:intergenic | 45.0% |
! | TTTTGGCAGTTTGGCAAGCA+AGG | - | chr8.4:39604272-39604291 | MS.gene64990:CDS | 45.0% |
!! | AAGAGTGCTTGTTGCGGTAA+AGG | - | chr8.4:39604431-39604450 | MS.gene64990:intron | 45.0% |
!! | AATTTTGGTCCCTCTCGAAG+CGG | - | chr8.4:39604835-39604854 | MS.gene64990:intron | 45.0% |
!! | ATCCTCAAGAGTGCTTGTTG+CGG | - | chr8.4:39604425-39604444 | MS.gene64990:intron | 45.0% |
!! | GGGCTTGTTGGAGTAATGAA+GGG | - | chr8.4:39604200-39604219 | MS.gene64990:intron | 45.0% |
!! | TGGGCTTGTTGGAGTAATGA+AGG | - | chr8.4:39604199-39604218 | MS.gene64990:intron | 45.0% |
!! | TTCTTGGAGGAAGGTGTCAT+AGG | + | chr8.4:39605267-39605286 | None:intergenic | 45.0% |
!!! | TTTTTTTTTTTTAGTATAAT+GGG | - | chr8.4:39604522-39604541 | MS.gene64990:CDS | 5.0% |
!!! | TTTTTTTTTTTTTAGTATAA+TGG | - | chr8.4:39604521-39604540 | MS.gene64990:CDS | 5.0% |
AGCGGAAGCGGTTGAGAATA+GGG | + | chr8.4:39605410-39605429 | None:intergenic | 50.0% | |
AGGTTGTTTGCGTGAAGCCT+GGG | - | chr8.4:39604469-39604488 | MS.gene64990:CDS | 50.0% | |
GTAATTGTGCCAGTCGTCGT+CGG | + | chr8.4:39604042-39604061 | None:intergenic | 50.0% | |
TACCACTCGCGGCAAAGAAA+AGG | + | chr8.4:39604743-39604762 | None:intergenic | 50.0% | |
TACCGCAACAAGCACTCTTG+AGG | + | chr8.4:39604430-39604449 | None:intergenic | 50.0% | |
TAGCGGAAGCGGTTGAGAAT+AGG | + | chr8.4:39605411-39605430 | None:intergenic | 50.0% | |
TAGGTGCTCCGCCTATATAC+GGG | - | chr8.4:39604700-39604719 | MS.gene64990:CDS | 50.0% | |
TCACATGCTCCTACAGGTGA+TGG | + | chr8.4:39605823-39605842 | None:intergenic | 50.0% | |
TGACAGAGCCCTTTGGTACA+CGG | + | chr8.4:39606044-39606063 | None:intergenic | 50.0% | |
TGCAGTTCACATGCTCCTAC+AGG | + | chr8.4:39605829-39605848 | None:intergenic | 50.0% | |
! | ATGTTTGGTTCCGCTTCGAG+AGG | + | chr8.4:39604848-39604867 | None:intergenic | 50.0% |
! | TGGTAGTGAGCTTAGTGCCT+TGG | - | chr8.4:39604627-39604646 | MS.gene64990:CDS | 50.0% |
! | TGGTGTGCCTTGTTGTCGAT+AGG | - | chr8.4:39605792-39605811 | MS.gene64990:intron | 50.0% |
! | TGTTTGGTTCCGCTTCGAGA+GGG | + | chr8.4:39604847-39604866 | None:intergenic | 50.0% |
! | TTCCTTTTCTTTGCCGCGAG+TGG | - | chr8.4:39604738-39604757 | MS.gene64990:CDS | 50.0% |
! | TTCGATTGCACCGACAAGAC+TGG | + | chr8.4:39605091-39605110 | None:intergenic | 50.0% |
!! | CTTGATGATGTGCACAGTCG+GGG | - | chr8.4:39605348-39605367 | MS.gene64990:intron | 50.0% |
!! | GCTTGATGATGTGCACAGTC+GGG | - | chr8.4:39605347-39605366 | MS.gene64990:intron | 50.0% |
!! | GGCTTGATGATGTGCACAGT+CGG | - | chr8.4:39605346-39605365 | MS.gene64990:intron | 50.0% |
AATGGGGCAGCCAGAGAGAA+AGG | + | chr8.4:39605196-39605215 | None:intergenic | 55.0% | |
AGACCTGACGATGCTTCCAG+AGG | + | chr8.4:39604011-39604030 | None:intergenic | 55.0% | |
AGGTGCTCCGCCTATATACG+GGG | - | chr8.4:39604701-39604720 | MS.gene64990:CDS | 55.0% | |
CATTACCGGGACCTTGGTAG+CGG | + | chr8.4:39605428-39605447 | None:intergenic | 55.0% | |
CCTCTCGATCAAAACCGTCG+TGG | - | chr8.4:39603954-39603973 | MS.gene64990:CDS | 55.0% | |
GACAGAGCCCTTTGGTACAC+GGG | + | chr8.4:39606043-39606062 | None:intergenic | 55.0% | |
GAGGTTGTTTGCGTGAAGCC+TGG | - | chr8.4:39604468-39604487 | MS.gene64990:CDS | 55.0% | |
TGGCAAGTGACAGAGCCCTT+TGG | + | chr8.4:39606051-39606070 | None:intergenic | 55.0% | |
TGTGCACAGTCGGGGATCAT+TGG | - | chr8.4:39605356-39605375 | MS.gene64990:intron | 55.0% | |
TTCCACTTTCCGACGACGAC+TGG | - | chr8.4:39604030-39604049 | MS.gene64990:CDS | 55.0% | |
! | TAGAGCTGGTGTTGAGGCGT+GGG | - | chr8.4:39604588-39604607 | MS.gene64990:CDS | 55.0% |
! | TGATGGTGATGTAGTGGCGG+TGG | - | chr8.4:39604350-39604369 | MS.gene64990:intron | 55.0% |
! | TTAGAGCTGGTGTTGAGGCG+TGG | - | chr8.4:39604587-39604606 | MS.gene64990:CDS | 55.0% |
!! | CCACGACGGTTTTGATCGAG+AGG | + | chr8.4:39603957-39603976 | None:intergenic | 55.0% |
CCTGACGATGCTTCCAGAGG+TGG | + | chr8.4:39604008-39604027 | None:intergenic | 60.0% | |
CTCAACCGCTTCCGCTACCA+AGG | - | chr8.4:39605414-39605433 | MS.gene64990:intron | 60.0% | |
GCTCACTACCAATCCCAGCC+TGG | + | chr8.4:39604618-39604637 | None:intergenic | 60.0% | |
TGCCAGTCGTCGTCGGAAAG+TGG | + | chr8.4:39604035-39604054 | None:intergenic | 60.0% | |
TGGGTATGCCAGGCTGGGAT+TGG | - | chr8.4:39604607-39604626 | MS.gene64990:CDS | 60.0% | |
TGTTGAGGCGTGGGTATGCC+AGG | - | chr8.4:39604597-39604616 | MS.gene64990:CDS | 60.0% | |
!! | CCACCTCTGGAAGCATCGTC+AGG | - | chr8.4:39604005-39604024 | MS.gene64990:CDS | 60.0% |
AGGCGTGGGTATGCCAGGCT+GGG | - | chr8.4:39604602-39604621 | MS.gene64990:CDS | 65.0% | |
CGCTTCCGCTACCAAGGTCC+CGG | - | chr8.4:39605420-39605439 | MS.gene64990:intron | 65.0% | |
TTCGCAGATGGCGCCACCTC+TGG | - | chr8.4:39603992-39604011 | MS.gene64990:CDS | 65.0% | |
!! | CGGGACCTTGGTAGCGGAAG+CGG | + | chr8.4:39605422-39605441 | None:intergenic | 65.0% |
GAGGCGTGGGTATGCCAGGC+TGG | - | chr8.4:39604601-39604620 | MS.gene64990:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 39603841 | 39606101 | 39603841 | ID=MS.gene64990 |
chr8.4 | mRNA | 39603841 | 39606101 | 39603841 | ID=MS.gene64990.t1;Parent=MS.gene64990 |
chr8.4 | exon | 39605876 | 39606101 | 39605876 | ID=MS.gene64990.t1.exon1;Parent=MS.gene64990.t1 |
chr8.4 | CDS | 39605876 | 39606101 | 39605876 | ID=cds.MS.gene64990.t1;Parent=MS.gene64990.t1 |
chr8.4 | exon | 39605294 | 39605351 | 39605294 | ID=MS.gene64990.t1.exon2;Parent=MS.gene64990.t1 |
chr8.4 | CDS | 39605294 | 39605351 | 39605294 | ID=cds.MS.gene64990.t1;Parent=MS.gene64990.t1 |
chr8.4 | exon | 39604460 | 39604850 | 39604460 | ID=MS.gene64990.t1.exon3;Parent=MS.gene64990.t1 |
chr8.4 | CDS | 39604460 | 39604850 | 39604460 | ID=cds.MS.gene64990.t1;Parent=MS.gene64990.t1 |
chr8.4 | exon | 39604236 | 39604337 | 39604236 | ID=MS.gene64990.t1.exon4;Parent=MS.gene64990.t1 |
chr8.4 | CDS | 39604236 | 39604337 | 39604236 | ID=cds.MS.gene64990.t1;Parent=MS.gene64990.t1 |
chr8.4 | exon | 39603841 | 39604128 | 39603841 | ID=MS.gene64990.t1.exon5;Parent=MS.gene64990.t1 |
chr8.4 | CDS | 39603841 | 39604128 | 39603841 | ID=cds.MS.gene64990.t1;Parent=MS.gene64990.t1 |
Gene Sequence |
Protein sequence |