Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68033.t1 | XP_024638992.1 | 86.5 | 266 | 36 | 0 | 1 | 266 | 1 | 266 | 2.20E-123 | 451.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68033.t1 | Q8H1R7 | 27.7 | 271 | 175 | 7 | 6 | 266 | 160 | 419 | 2.0e-16 | 87.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68033.t1 | A0A2K3PAF9 | 67.9 | 265 | 85 | 0 | 2 | 266 | 184 | 448 | 5.0e-98 | 367.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68033.t1 | MTR_8g445780 | 70.909 | 220 | 64 | 0 | 1 | 220 | 171 | 390 | 2.25e-112 | 329 |
MS.gene68033.t1 | MTR_8g014260 | 63.060 | 268 | 97 | 2 | 1 | 266 | 184 | 451 | 6.21e-110 | 325 |
MS.gene68033.t1 | MTR_8g014210 | 67.100 | 231 | 76 | 0 | 36 | 266 | 1 | 231 | 2.44e-109 | 315 |
MS.gene68033.t1 | MTR_4g024710 | 60.448 | 268 | 104 | 2 | 1 | 266 | 80 | 347 | 1.61e-107 | 315 |
MS.gene68033.t1 | MTR_4g024745 | 61.355 | 251 | 95 | 2 | 1 | 249 | 34 | 284 | 4.10e-98 | 289 |
MS.gene68033.t1 | MTR_2g083840 | 52.206 | 272 | 122 | 4 | 2 | 266 | 187 | 457 | 3.92e-81 | 251 |
MS.gene68033.t1 | MTR_8g062270 | 47.619 | 273 | 128 | 6 | 3 | 265 | 186 | 453 | 4.33e-70 | 223 |
MS.gene68033.t1 | MTR_8g058970 | 49.821 | 279 | 124 | 7 | 2 | 266 | 201 | 477 | 2.08e-68 | 219 |
MS.gene68033.t1 | MTR_8g468810 | 49.097 | 277 | 126 | 9 | 2 | 266 | 190 | 463 | 4.63e-68 | 218 |
MS.gene68033.t1 | MTR_5g092960 | 48.162 | 272 | 123 | 6 | 9 | 265 | 193 | 461 | 2.34e-66 | 213 |
MS.gene68033.t1 | MTR_8g077460 | 47.471 | 257 | 118 | 5 | 17 | 266 | 129 | 375 | 1.84e-65 | 208 |
MS.gene68033.t1 | MTR_8g077460 | 63.462 | 52 | 19 | 0 | 2 | 53 | 178 | 229 | 5.11e-13 | 68.6 |
MS.gene68033.t1 | MTR_8g468840 | 46.124 | 258 | 129 | 6 | 14 | 264 | 194 | 448 | 1.45e-58 | 192 |
MS.gene68033.t1 | MTR_8g467800 | 42.199 | 282 | 141 | 9 | 3 | 266 | 176 | 453 | 3.36e-56 | 187 |
MS.gene68033.t1 | MTR_8g468760 | 44.195 | 267 | 106 | 6 | 9 | 265 | 185 | 418 | 2.65e-52 | 176 |
MS.gene68033.t1 | MTR_4g032730 | 40.636 | 283 | 134 | 7 | 10 | 265 | 191 | 466 | 1.98e-49 | 169 |
MS.gene68033.t1 | MTR_8g014160 | 38.148 | 270 | 108 | 4 | 2 | 266 | 210 | 425 | 1.27e-45 | 158 |
MS.gene68033.t1 | MTR_8g469020 | 39.313 | 262 | 149 | 8 | 11 | 266 | 194 | 451 | 4.49e-43 | 152 |
MS.gene68033.t1 | MTR_8g468810 | 50.000 | 186 | 85 | 5 | 2 | 181 | 190 | 373 | 9.84e-42 | 147 |
MS.gene68033.t1 | MTR_8g058965 | 40.741 | 270 | 147 | 9 | 5 | 266 | 192 | 456 | 6.54e-41 | 146 |
MS.gene68033.t1 | MTR_5g092960 | 50.000 | 180 | 80 | 3 | 9 | 179 | 193 | 371 | 1.98e-39 | 141 |
MS.gene68033.t1 | MTR_8g062010 | 37.091 | 275 | 151 | 10 | 1 | 266 | 169 | 430 | 2.80e-39 | 142 |
MS.gene68033.t1 | MTR_8g062310 | 36.704 | 267 | 150 | 7 | 4 | 266 | 177 | 428 | 2.74e-38 | 139 |
MS.gene68033.t1 | MTR_8g070950 | 35.870 | 276 | 149 | 8 | 4 | 266 | 174 | 434 | 4.36e-38 | 139 |
MS.gene68033.t1 | MTR_8g062080 | 35.636 | 275 | 150 | 10 | 4 | 266 | 186 | 445 | 4.88e-36 | 133 |
MS.gene68033.t1 | MTR_8g014230 | 66.667 | 78 | 26 | 0 | 179 | 256 | 18 | 95 | 4.41e-30 | 109 |
MS.gene68033.t1 | MTR_4g050250 | 38.136 | 236 | 118 | 8 | 1 | 212 | 188 | 419 | 1.75e-28 | 112 |
MS.gene68033.t1 | MTR_2g086020 | 47.328 | 131 | 66 | 3 | 139 | 266 | 185 | 315 | 6.28e-28 | 109 |
MS.gene68033.t1 | MTR_8g062300 | 30.556 | 288 | 167 | 8 | 1 | 266 | 201 | 477 | 1.22e-27 | 110 |
MS.gene68033.t1 | MTR_8g468810 | 51.240 | 121 | 58 | 1 | 2 | 122 | 190 | 309 | 1.77e-27 | 108 |
MS.gene68033.t1 | MTR_8g468810 | 51.240 | 121 | 58 | 1 | 2 | 122 | 190 | 309 | 1.92e-27 | 108 |
MS.gene68033.t1 | MTR_8g468810 | 51.240 | 121 | 58 | 1 | 2 | 122 | 190 | 309 | 2.89e-27 | 108 |
MS.gene68033.t1 | MTR_8g467800 | 43.704 | 135 | 66 | 5 | 3 | 128 | 176 | 309 | 2.82e-18 | 83.6 |
MS.gene68033.t1 | MTR_5g084070 | 29.457 | 258 | 167 | 9 | 9 | 258 | 169 | 419 | 1.19e-16 | 79.3 |
MS.gene68033.t1 | MTR_5g008950 | 29.661 | 236 | 125 | 10 | 62 | 266 | 140 | 365 | 2.55e-14 | 72.4 |
MS.gene68033.t1 | MTR_7g098510 | 29.130 | 230 | 130 | 8 | 55 | 266 | 177 | 391 | 3.40e-14 | 72.0 |
MS.gene68033.t1 | MTR_1g041245 | 38.393 | 112 | 64 | 2 | 160 | 266 | 275 | 386 | 9.22e-13 | 67.8 |
MS.gene68033.t1 | MTR_7g032380 | 32.727 | 110 | 71 | 1 | 160 | 266 | 247 | 356 | 9.27e-13 | 67.8 |
MS.gene68033.t1 | MTR_3g115430 | 38.532 | 109 | 62 | 3 | 160 | 266 | 20 | 125 | 1.47e-12 | 63.5 |
MS.gene68033.t1 | MTR_8g467790 | 31.373 | 204 | 102 | 9 | 10 | 208 | 320 | 490 | 4.78e-12 | 65.9 |
MS.gene68033.t1 | MTR_5g080710 | 29.333 | 225 | 145 | 8 | 17 | 234 | 203 | 420 | 2.65e-11 | 63.5 |
MS.gene68033.t1 | MTR_7g032370 | 32.727 | 110 | 71 | 1 | 160 | 266 | 243 | 352 | 6.87e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68033.t1 | AT4G26340 | 29.044 | 272 | 172 | 7 | 5 | 266 | 159 | 419 | 9.84e-24 | 99.8 |
MS.gene68033.t1 | AT5G38570 | 26.894 | 264 | 174 | 9 | 8 | 265 | 125 | 375 | 7.64e-16 | 77.0 |
MS.gene68033.t1 | AT4G26350 | 25.979 | 281 | 176 | 9 | 6 | 266 | 160 | 428 | 1.95e-15 | 75.9 |
MS.gene68033.t1 | AT3G49030 | 28.214 | 280 | 172 | 11 | 1 | 265 | 175 | 440 | 3.42e-14 | 72.4 |
MS.gene68033.t1 | AT4G00160 | 28.269 | 283 | 167 | 14 | 6 | 266 | 176 | 444 | 1.26e-12 | 67.8 |
MS.gene68033.t1 | AT5G56452 | 26.939 | 245 | 147 | 8 | 34 | 266 | 3 | 227 | 1.46e-12 | 65.9 |
MS.gene68033.t1 | AT5G56452 | 25.000 | 252 | 142 | 7 | 34 | 266 | 3 | 226 | 3.56e-12 | 64.7 |
MS.gene68033.t1 | AT5G56800 | 25.623 | 281 | 170 | 12 | 3 | 265 | 84 | 343 | 4.02e-12 | 65.9 |
MS.gene68033.t1 | AT3G52680 | 28.315 | 279 | 171 | 13 | 6 | 266 | 180 | 447 | 5.60e-12 | 65.9 |
MS.gene68033.t1 | AT5G56400 | 27.679 | 224 | 135 | 11 | 55 | 266 | 247 | 455 | 8.65e-12 | 65.1 |
MS.gene68033.t1 | AT3G53550 | 25.926 | 243 | 146 | 8 | 26 | 265 | 29 | 240 | 9.33e-12 | 63.9 |
MS.gene68033.t1 | AT5G56820 | 26.978 | 278 | 167 | 9 | 3 | 263 | 165 | 423 | 1.02e-11 | 65.1 |
MS.gene68033.t1 | AT1G32375 | 26.027 | 219 | 147 | 6 | 51 | 266 | 216 | 422 | 1.47e-11 | 64.3 |
MS.gene68033.t1 | AT1G32375 | 26.027 | 219 | 147 | 6 | 51 | 266 | 216 | 422 | 1.47e-11 | 64.3 |
MS.gene68033.t1 | AT3G26930 | 26.573 | 286 | 172 | 12 | 6 | 266 | 126 | 398 | 2.35e-11 | 63.9 |
MS.gene68033.t1 | AT3G26930 | 26.573 | 286 | 172 | 12 | 6 | 266 | 171 | 443 | 2.49e-11 | 63.9 |
MS.gene68033.t1 | AT5G56390 | 26.217 | 267 | 167 | 10 | 14 | 265 | 173 | 424 | 6.39e-11 | 62.4 |
MS.gene68033.t1 | AT3G54910 | 27.962 | 211 | 129 | 5 | 62 | 266 | 180 | 373 | 7.81e-11 | 62.0 |
MS.gene68033.t1 | AT3G54910 | 27.962 | 211 | 129 | 5 | 62 | 266 | 180 | 373 | 7.81e-11 | 62.0 |
MS.gene68033.t1 | AT3G54910 | 27.962 | 211 | 129 | 5 | 62 | 266 | 180 | 373 | 7.81e-11 | 62.0 |
Find 60 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGAGCTTTATTGAATTTAA+AGG | 0.137200 | 5.3:+12367489 | MS.gene68033:CDS |
AACCTCTTTCGCGCTCTCTA+TGG | 0.230448 | 5.3:+12366889 | MS.gene68033:CDS |
CTGCTCAAATCTAGAAATTC+TGG | 0.245669 | 5.3:+12366624 | MS.gene68033:CDS |
ATGTGATTTGGGTAATATTA+AGG | 0.247933 | 5.3:-12366771 | None:intergenic |
TCTGTGAATGCACTTCTTGA+TGG | 0.277751 | 5.3:+12366601 | MS.gene68033:CDS |
AACCTTCGCCGAATGTGATT+TGG | 0.296864 | 5.3:-12366783 | None:intergenic |
CGCAAAGTTTATCCAAGCTT+TGG | 0.298408 | 5.3:-12366663 | None:intergenic |
AGGTGGGATACGTGACAATT+AGG | 0.352399 | 5.3:-12367468 | None:intergenic |
ACCTTCGCCGAATGTGATTT+GGG | 0.356533 | 5.3:-12366782 | None:intergenic |
TGTGGAGACCATGCTAAAAT+TGG | 0.366224 | 5.3:-12367435 | None:intergenic |
GCAAAGTTTATCCAAGCTTT+GGG | 0.387401 | 5.3:-12366662 | None:intergenic |
GAATGATGTTGGGGCTTACT+TGG | 0.419052 | 5.3:+12366723 | MS.gene68033:CDS |
GATTATTGCTGATATTTCCT+TGG | 0.419235 | 5.3:+12367584 | MS.gene68033:CDS |
GCCTTGAGCTCGTTCTTCCC+TGG | 0.422977 | 5.3:+12367183 | MS.gene68033:CDS |
GCGTCCCGCCTTCCGTGAAA+AGG | 0.441870 | 5.3:+12366683 | MS.gene68033:CDS |
CGCGAAAGAGGTTGTGCAAA+GGG | 0.461420 | 5.3:-12366879 | None:intergenic |
AATATTACCCAAATCACATT+CGG | 0.467774 | 5.3:+12366775 | MS.gene68033:CDS |
TCACCATTGAGAATGATGTT+GGG | 0.472402 | 5.3:+12366713 | MS.gene68033:CDS |
ATTGAATTTAAAGGATTTCG+AGG | 0.478575 | 5.3:+12367498 | MS.gene68033:CDS |
ATCACCATTGAGAATGATGT+TGG | 0.479824 | 5.3:+12366712 | MS.gene68033:CDS |
ACCTCTTTCGCGCTCTCTAT+GGG | 0.481868 | 5.3:+12366890 | MS.gene68033:CDS |
TGGCACATTGCAGAGGCCCT+TGG | 0.485254 | 5.3:-12367651 | None:intergenic |
TCAACAAATGAAACCTCGTC+TGG | 0.487781 | 5.3:-12367525 | None:intergenic |
GATGTGTTTCCCACATCACT+TGG | 0.489431 | 5.3:+12366847 | MS.gene68033:CDS |
AGATACGCTTCCACCACATT+GGG | 0.491396 | 5.3:-12366823 | None:intergenic |
CATTCTGAATCATGAGAGCT+TGG | 0.502108 | 5.3:-12367253 | None:intergenic |
ATCATGAGAGCTTGGAGCAA+GGG | 0.502298 | 5.3:-12367245 | None:intergenic |
CTTTAAATTCAATAAAGCTC+AGG | 0.504473 | 5.3:-12367488 | None:intergenic |
ATATTAAGGTATTGAAGATC+CGG | 0.505075 | 5.3:-12366757 | None:intergenic |
GATGATCAACATTGGTTATG+TGG | 0.506783 | 5.3:+12366570 | MS.gene68033:CDS |
TCCCATAGAGAGCGCGAAAG+AGG | 0.508824 | 5.3:-12366891 | None:intergenic |
TAAATTCAATAAAGCTCAGG+TGG | 0.522332 | 5.3:-12367485 | None:intergenic |
AAGATACGCTTCCACCACAT+TGG | 0.536393 | 5.3:-12366824 | None:intergenic |
ACGTGACAATTAGGAATACT+TGG | 0.538518 | 5.3:-12367459 | None:intergenic |
ACCCAAATCACATTCGGCGA+AGG | 0.544081 | 5.3:+12366781 | MS.gene68033:CDS |
CACCATTGAGAATGATGTTG+GGG | 0.556110 | 5.3:+12366714 | MS.gene68033:CDS |
CAGTTCAATCAAATTTCAGT+TGG | 0.556452 | 5.3:-12367671 | None:intergenic |
AGCCCCAACATCATTCTCAA+TGG | 0.559977 | 5.3:-12366716 | None:intergenic |
GACGATGGAACCAAGTGATG+TGG | 0.565688 | 5.3:-12366857 | None:intergenic |
CAATTAGGAATACTTGGCTG+TGG | 0.568416 | 5.3:-12367453 | None:intergenic |
AATCATGAGAGCTTGGAGCA+AGG | 0.579140 | 5.3:-12367246 | None:intergenic |
ACCAGGGAAGAACGAGCTCA+AGG | 0.581952 | 5.3:-12367184 | None:intergenic |
AAGAGAATGTGAGTTAAACC+AGG | 0.583685 | 5.3:-12367201 | None:intergenic |
AGTTATTATCTGATGTGCCA+AGG | 0.585159 | 5.3:+12367634 | MS.gene68033:CDS |
TTTCAGTTGGCACATTGCAG+AGG | 0.594810 | 5.3:-12367658 | None:intergenic |
GCGCGAAAGAGGTTGTGCAA+AGG | 0.598386 | 5.3:-12366880 | None:intergenic |
GTGTCCAAACAGTGGCTGCT+TGG | 0.603251 | 5.3:+12367116 | MS.gene68033:intron |
GTTATTATCTGATGTGCCAA+GGG | 0.612609 | 5.3:+12367635 | MS.gene68033:CDS |
AGGGACATTTCTGAATCAAG+TGG | 0.617766 | 5.3:-12367226 | None:intergenic |
AAGATGTTGATGATCAACAT+TGG | 0.618238 | 5.3:+12366562 | None:intergenic |
ACGATGGAACCAAGTGATGT+GGG | 0.620386 | 5.3:-12366856 | None:intergenic |
TTACTTGGAAGTAAATGCAC+CGG | 0.621805 | 5.3:+12366738 | MS.gene68033:CDS |
GAGGTTGTGCAAAGGGACGA+TGG | 0.633691 | 5.3:-12366872 | None:intergenic |
AAATTCAATAAAGCTCAGGT+GGG | 0.637474 | 5.3:-12367484 | None:intergenic |
GTTGAGTCGTTCAACAACCA+AGG | 0.649460 | 5.3:+12366927 | MS.gene68033:CDS |
AGAGAATGTGAGTTAAACCA+GGG | 0.661025 | 5.3:-12367200 | None:intergenic |
GTACAACTTGCCCAATGTGG+TGG | 0.661456 | 5.3:+12366813 | MS.gene68033:CDS |
TCTCATGATTCAGAATGACA+AGG | 0.672143 | 5.3:+12367259 | MS.gene68033:CDS |
CTTGTACAACTTGCCCAATG+TGG | 0.684396 | 5.3:+12366810 | MS.gene68033:CDS |
ATTTCGAGGATTTCCAGACG+AGG | 0.686849 | 5.3:+12367512 | MS.gene68033:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGATTTATTATTATTAGTT+AGG | - | chr5.3:12367011-12367030 | None:intergenic | 10.0% |
!! | AACTCTATATATAAATGATG+AGG | - | chr5.3:12366984-12367003 | None:intergenic | 20.0% |
! | AATATTACCCAAATCACATT+CGG | + | chr5.3:12366775-12366794 | MS.gene68033:CDS | 25.0% |
! | ATTGAATTTAAAGGATTTCG+AGG | + | chr5.3:12367498-12367517 | MS.gene68033:CDS | 25.0% |
! | CATTTAATCCAAGCTTAATT+TGG | + | chr5.3:12367285-12367304 | MS.gene68033:intron | 25.0% |
! | CTAAAGAAAAAACTTAACCT+TGG | - | chr5.3:12366947-12366966 | None:intergenic | 25.0% |
! | CTTTAAATTCAATAAAGCTC+AGG | - | chr5.3:12367491-12367510 | None:intergenic | 25.0% |
! | TTAATAGACCAAATTAAGCT+TGG | - | chr5.3:12367296-12367315 | None:intergenic | 25.0% |
!! | ATGTGATTTGGGTAATATTA+AGG | - | chr5.3:12366774-12366793 | None:intergenic | 25.0% |
!!! | ATATTAAGGTATTGAAGATC+CGG | - | chr5.3:12366760-12366779 | None:intergenic | 25.0% |
!!! | CTGAGCTTTATTGAATTTAA+AGG | + | chr5.3:12367489-12367508 | MS.gene68033:CDS | 25.0% |
!!! | GAATGAAGTACTTCTTTTTT+AGG | - | chr5.3:12367611-12367630 | None:intergenic | 25.0% |
AAATTCAATAAAGCTCAGGT+GGG | - | chr5.3:12367487-12367506 | None:intergenic | 30.0% | |
GATTATTGCTGATATTTCCT+TGG | + | chr5.3:12367584-12367603 | MS.gene68033:CDS | 30.0% | |
TAAATTCAATAAAGCTCAGG+TGG | - | chr5.3:12367488-12367507 | None:intergenic | 30.0% | |
! | GTTGAGTATGTTTTGCAAAA+AGG | + | chr5.3:12367543-12367562 | MS.gene68033:CDS | 30.0% |
!! | ATTCTTGAAAAAGCATCTCA+TGG | - | chr5.3:12367148-12367167 | None:intergenic | 30.0% |
!! | TTCTTGAAAAAGCATCTCAT+GGG | - | chr5.3:12367147-12367166 | None:intergenic | 30.0% |
AAGAGAATGTGAGTTAAACC+AGG | - | chr5.3:12367204-12367223 | None:intergenic | 35.0% | |
ACGTGACAATTAGGAATACT+TGG | - | chr5.3:12367462-12367481 | None:intergenic | 35.0% | |
AGAGAATGTGAGTTAAACCA+GGG | - | chr5.3:12367203-12367222 | None:intergenic | 35.0% | |
AGTTATTATCTGATGTGCCA+AGG | + | chr5.3:12367634-12367653 | MS.gene68033:CDS | 35.0% | |
ATCACCATTGAGAATGATGT+TGG | + | chr5.3:12366712-12366731 | MS.gene68033:CDS | 35.0% | |
CTGCTCAAATCTAGAAATTC+TGG | + | chr5.3:12366624-12366643 | MS.gene68033:CDS | 35.0% | |
GCAAAGTTTATCCAAGCTTT+GGG | - | chr5.3:12366665-12366684 | None:intergenic | 35.0% | |
GTTATTATCTGATGTGCCAA+GGG | + | chr5.3:12367635-12367654 | MS.gene68033:CDS | 35.0% | |
TCACCATTGAGAATGATGTT+GGG | + | chr5.3:12366713-12366732 | MS.gene68033:CDS | 35.0% | |
TCTCATGATTCAGAATGACA+AGG | + | chr5.3:12367259-12367278 | MS.gene68033:CDS | 35.0% | |
TTACTTGGAAGTAAATGCAC+CGG | + | chr5.3:12366738-12366757 | MS.gene68033:CDS | 35.0% | |
! | ATTTTCAACCTTTTCACGGA+AGG | - | chr5.3:12366694-12366713 | None:intergenic | 35.0% |
! | GATGATCAACATTGGTTATG+TGG | + | chr5.3:12366570-12366589 | MS.gene68033:CDS | 35.0% |
! | GGTGATTTTCAACCTTTTCA+CGG | - | chr5.3:12366698-12366717 | None:intergenic | 35.0% |
!! | TCTTGAAAAAGCATCTCATG+GGG | - | chr5.3:12367146-12367165 | None:intergenic | 35.0% |
!!! | GTACTTCTTTTTTAGGTCCA+AGG | - | chr5.3:12367604-12367623 | None:intergenic | 35.0% |
AGGGACATTTCTGAATCAAG+TGG | - | chr5.3:12367229-12367248 | None:intergenic | 40.0% | |
CAATTAGGAATACTTGGCTG+TGG | - | chr5.3:12367456-12367475 | None:intergenic | 40.0% | |
CACCATTGAGAATGATGTTG+GGG | + | chr5.3:12366714-12366733 | MS.gene68033:CDS | 40.0% | |
CATTCTGAATCATGAGAGCT+TGG | - | chr5.3:12367256-12367275 | None:intergenic | 40.0% | |
CGCAAAGTTTATCCAAGCTT+TGG | - | chr5.3:12366666-12366685 | None:intergenic | 40.0% | |
TCAACAAATGAAACCTCGTC+TGG | - | chr5.3:12367528-12367547 | None:intergenic | 40.0% | |
TCTGTGAATGCACTTCTTGA+TGG | + | chr5.3:12366601-12366620 | MS.gene68033:CDS | 40.0% | |
TGTGGAGACCATGCTAAAAT+TGG | - | chr5.3:12367438-12367457 | None:intergenic | 40.0% | |
TTGATTTCGTGTCCAAACAG+TGG | + | chr5.3:12367108-12367127 | MS.gene68033:intron | 40.0% | |
AACCTTCGCCGAATGTGATT+TGG | - | chr5.3:12366786-12366805 | None:intergenic | 45.0% | |
AAGATACGCTTCCACCACAT+TGG | - | chr5.3:12366827-12366846 | None:intergenic | 45.0% | |
AATCATGAGAGCTTGGAGCA+AGG | - | chr5.3:12367249-12367268 | None:intergenic | 45.0% | |
ACCGTTCCTGTAAGCAACAA+AGG | - | chr5.3:12367413-12367432 | None:intergenic | 45.0% | |
ACCTTCGCCGAATGTGATTT+GGG | - | chr5.3:12366785-12366804 | None:intergenic | 45.0% | |
ACGATGGAACCAAGTGATGT+GGG | - | chr5.3:12366859-12366878 | None:intergenic | 45.0% | |
AGATACGCTTCCACCACATT+GGG | - | chr5.3:12366826-12366845 | None:intergenic | 45.0% | |
AGCCCCAACATCATTCTCAA+TGG | - | chr5.3:12366719-12366738 | None:intergenic | 45.0% | |
AGGTGGGATACGTGACAATT+AGG | - | chr5.3:12367471-12367490 | None:intergenic | 45.0% | |
ATCATGAGAGCTTGGAGCAA+GGG | - | chr5.3:12367248-12367267 | None:intergenic | 45.0% | |
ATTTCGAGGATTTCCAGACG+AGG | + | chr5.3:12367512-12367531 | MS.gene68033:CDS | 45.0% | |
CCGTTCCTGTAAGCAACAAA+GGG | - | chr5.3:12367412-12367431 | None:intergenic | 45.0% | |
CTTGTACAACTTGCCCAATG+TGG | + | chr5.3:12366810-12366829 | MS.gene68033:CDS | 45.0% | |
GAATGATGTTGGGGCTTACT+TGG | + | chr5.3:12366723-12366742 | MS.gene68033:CDS | 45.0% | |
GATGTGTTTCCCACATCACT+TGG | + | chr5.3:12366847-12366866 | MS.gene68033:CDS | 45.0% | |
GTTGAGTCGTTCAACAACCA+AGG | + | chr5.3:12366927-12366946 | MS.gene68033:CDS | 45.0% | |
TTTCAGTTGGCACATTGCAG+AGG | - | chr5.3:12367661-12367680 | None:intergenic | 45.0% | |
! | CCCTTTGTTGCTTACAGGAA+CGG | + | chr5.3:12367409-12367428 | MS.gene68033:intron | 45.0% |
! | TCATGCCCTTTGTTGCTTAC+AGG | + | chr5.3:12367404-12367423 | MS.gene68033:intron | 45.0% |
! | TTCAACCTTTTCACGGAAGG+CGG | - | chr5.3:12366691-12366710 | None:intergenic | 45.0% |
!! | AACGGTCGCCAATTTTAGCA+TGG | + | chr5.3:12367427-12367446 | MS.gene68033:CDS | 45.0% |
!! | TTGCTTTTCAGCCCAAAGCT+TGG | + | chr5.3:12366651-12366670 | MS.gene68033:CDS | 45.0% |
AACCTCTTTCGCGCTCTCTA+TGG | + | chr5.3:12366889-12366908 | MS.gene68033:CDS | 50.0% | |
ACCCAAATCACATTCGGCGA+AGG | + | chr5.3:12366781-12366800 | MS.gene68033:CDS | 50.0% | |
ACCTCTTTCGCGCTCTCTAT+GGG | + | chr5.3:12366890-12366909 | MS.gene68033:CDS | 50.0% | |
CGCGAAAGAGGTTGTGCAAA+GGG | - | chr5.3:12366882-12366901 | None:intergenic | 50.0% | |
GACGATGGAACCAAGTGATG+TGG | - | chr5.3:12366860-12366879 | None:intergenic | 50.0% | |
GTACAACTTGCCCAATGTGG+TGG | + | chr5.3:12366813-12366832 | MS.gene68033:CDS | 50.0% | |
TTCACCAAGCAGCCACTGTT+TGG | - | chr5.3:12367123-12367142 | None:intergenic | 50.0% | |
! | TCAACCTTTTCACGGAAGGC+GGG | - | chr5.3:12366690-12366709 | None:intergenic | 50.0% |
ACCAGGGAAGAACGAGCTCA+AGG | - | chr5.3:12367187-12367206 | None:intergenic | 55.0% | |
GAGGTTGTGCAAAGGGACGA+TGG | - | chr5.3:12366875-12366894 | None:intergenic | 55.0% | |
GCGCGAAAGAGGTTGTGCAA+AGG | - | chr5.3:12366883-12366902 | None:intergenic | 55.0% | |
GTGTCCAAACAGTGGCTGCT+TGG | + | chr5.3:12367116-12367135 | MS.gene68033:intron | 55.0% | |
! | TCCCATAGAGAGCGCGAAAG+AGG | - | chr5.3:12366894-12366913 | None:intergenic | 55.0% |
GCCTTGAGCTCGTTCTTCCC+TGG | + | chr5.3:12367183-12367202 | MS.gene68033:CDS | 60.0% | |
TGGCACATTGCAGAGGCCCT+TGG | - | chr5.3:12367654-12367673 | None:intergenic | 60.0% | |
GCGTCCCGCCTTCCGTGAAA+AGG | + | chr5.3:12366683-12366702 | MS.gene68033:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 12366565 | 12367689 | 12366565 | ID=MS.gene68033 |
chr5.3 | mRNA | 12366565 | 12367689 | 12366565 | ID=MS.gene68033.t1;Parent=MS.gene68033 |
chr5.3 | exon | 12366565 | 12366948 | 12366565 | ID=MS.gene68033.t1.exon1;Parent=MS.gene68033.t1 |
chr5.3 | CDS | 12366565 | 12366948 | 12366565 | ID=cds.MS.gene68033.t1;Parent=MS.gene68033.t1 |
chr5.3 | exon | 12367128 | 12367280 | 12367128 | ID=MS.gene68033.t1.exon2;Parent=MS.gene68033.t1 |
chr5.3 | CDS | 12367128 | 12367280 | 12367128 | ID=cds.MS.gene68033.t1;Parent=MS.gene68033.t1 |
chr5.3 | exon | 12367426 | 12367689 | 12367426 | ID=MS.gene68033.t1.exon3;Parent=MS.gene68033.t1 |
chr5.3 | CDS | 12367426 | 12367689 | 12367426 | ID=cds.MS.gene68033.t1;Parent=MS.gene68033.t1 |
Gene Sequence |
Protein sequence |