AlfalfaGEDB | MS.gene79058

M. sativa cultivar XinJiangDaYe / MS.gene79058

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0008150 GO:0008152 GO:0009521 GO:0009523 GO:0009654 GO:0009987 GO:0015979 GO:0019898 GO:0032991 GO:0043167 GO:0043169 GO:0044237 GO:0046872 GO:0098796 GO:0110165 GO:1902494 GO:1990204
PFAM: PF01789.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79058.t1	AFK43236.1	98.6	147	2	0	96	242	95	241	2.80E-77	298.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79058.t1	P82658	78.8	146	31	0	96	241	81	226	2.7e-65	250.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79058.t1	G7IWL6	98.6	147	2	0	96	242	96	242	2.0e-77	298.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene79058	0.836182	1.09E-56	-1.69E-46
MS.gene049217	MS.gene79058	0.835785	1.37E-56	-1.69E-46
MS.gene049222	MS.gene79058	0.844652	6.62E-59	-1.69E-46
MS.gene049285	MS.gene79058	0.848233	6.98E-60	-1.69E-46
MS.gene049320	MS.gene79058	0.851746	7.26E-61	-1.69E-46
MS.gene049351	MS.gene79058	0.833206	6.09E-56	-1.69E-46
MS.gene049356	MS.gene79058	0.819407	1.18E-52	-1.69E-46
MS.gene049369	MS.gene79058	0.828402	9.17E-55	-1.69E-46
MS.gene049427	MS.gene79058	0.912514	1.78E-83	-1.69E-46
MS.gene049491	MS.gene79058	0.807339	5.30E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79058.t1	MTR_3g028150	92.958	213	13	1	30	242	32	242	1.18e-137	386

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79058.t1	AT3G63540	78.261	138	30	0	104	241	3	140	4.29e-82	242

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Find 46 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTCCTTCCAACCTTC+TGG	0.272048	3.1:+20332905	None:intergenic
AATATCTAACTTTCCTTTCT+GGG	0.289515	3.1:-20332808	MS.gene79058:CDS
AATTTGCAAGATATTATTAG+TGG	0.515902	3.1:-20332728	MS.gene79058:CDS
AGGTGGTGATGTTGTGAGAA+TGG	0.508602	3.1:+20333051	None:intergenic
CGACGTTCCAGAAGGTTGGA+AGG	0.585452	3.1:-20332912	MS.gene79058:CDS
CTAACTGACGAAACCCAGAA+AGG	0.634618	3.1:+20332795	None:intergenic
GAAGAAGTGAAAGATGATAA+AGG	0.482410	3.1:-20332686	MS.gene79058:CDS
GAATATCTAACTTTCCTTTC+TGG	0.121727	3.1:-20332809	MS.gene79058:CDS
GAGGAGGAGAAAATGGGTGG+TGG	0.570174	3.1:+20333196	None:intergenic
GAGGAGGAGGAGAAAATGGG+TGG	0.548714	3.1:+20333193	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAAGTGAAAGATGATAA+AGG	-	chr3.1:20333048-20333067	MS.gene79058:CDS	30.0%
GAATATCTAACTTTCCTTTC+TGG	-	chr3.1:20332925-20332944	MS.gene79058:CDS	30.0%
TTGTGTTTGAATGAGATAAG+AGG	+	chr3.1:20332613-20332632	None:intergenic	30.0%
TCCTGAGTGGAATAAAGATA+AGG	-	chr3.1:20333176-20333195	MS.gene79058:CDS	35.0%
TCCTTATCTTTATTCCACTC+AGG	+	chr3.1:20333180-20333199	None:intergenic	35.0%
TCTCCCTACAATCTCTACTA+CGG	-	chr3.1:20332724-20332743	MS.gene79058:CDS	40.0%
TCTTTATTCCACTCAGGAGT+AGG	+	chr3.1:20333174-20333193	None:intergenic	40.0%
TTCTGCTGAGTCTTTCTTGT+TGG	+	chr3.1:20332794-20332813	None:intergenic	40.0%
AAACGTTCCTTCCAACCTTC+TGG	+	chr3.1:20332832-20332851	None:intergenic	45.0%
CTAACTGACGAAACCCAGAA+AGG	+	chr3.1:20332942-20332961	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	20332514	20333242	20332514	ID=MS.gene79058
chr3.1	mRNA	20332514	20333242	20332514	ID=MS.gene79058.t1;Parent=MS.gene79058
chr3.1	exon	20332514	20333242	20332514	ID=MS.gene79058.t1.exon1;Parent=MS.gene79058.t1
chr3.1	CDS	20332514	20333242	20332514	ID=cds.MS.gene79058.t1;Parent=MS.gene79058.t1

Gene Sequence

>MS.gene79058

ATGGCCACAATTTTCTCATCATCACCACCACCCATTTTCTCCTCCTCCTCCACCAGCACCACCACAACAACCACCACAACCACCACCATATCAAAACCTCTTATCTCATTCAAACACAAACAACCTCTAATAACCACCACCTTAACAGCAGCAGCAGCAGCTATAGCCACCATTCTCACAACATCACCACCTTCCATAGCAGCAGAATCATCTCCCTACAATCTCTACTACGGCACAGCAGCAAGTGCAGCAAACTACGGCGGCTACGGCGGAAACTCCAACAAGAAAGACTCAGCAGAATACATCTACGACGTTCCAGAAGGTTGGAAGGAACGTTTAATATCAAAAGTAGAAAAAGGTACAAATGGAACAGACAGTGAGTTCTACAATCCAAAGAAAAGAACAGAGAAAGAATATCTAACTTTCCTTTCTGGGTTTCGTCAGTTAGCACCAAAAGACGCTGTCTTGAACAACTTAGCACTTTCTGATGTGAATTTGCAAGATATTATTAGTGGTGCTGATAATGTGAGTTCTGAAGAAGTGAAAGATGATAAAGGTCAAGTTTATTATGTTTATGAGATTGATGGTGTTGCTTATCATAGCTTGATTTCTGTTACTTGTGCTAATAATAAGCTTTATGCTCATTTTGTTAATGCTCCTACTCCTGAGTGGAATAAAGATAAGGATCTTCTCACTCATGTTCATAAGTCTTTTAAGACTATTGTATAA

Protein sequence

>MS.gene79058.t1

MATIFSSSPPPIFSSSSTSTTTTTTTTTTISKPLISFKHKQPLITTTLTAAAAAIATILTTSPPSIAAESSPYNLYYGTAASAANYGGYGGNSNKKDSAEYIYDVPEGWKERLISKVEKGTNGTDSEFYNPKKRTEKEYLTFLSGFRQLAPKDAVLNNLALSDVNLQDIISGADNVSSEEVKDDKGQVYYVYEIDGVAYHSLISVTCANNKLYAHFVNAPTPEWNKDKDLLTHVHKSFKTIV