Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513260 | XP_013469106.1 | 98.540 | 137 | 2 | 0 | 1 | 137 | 1 | 137 | 2.69e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513260 | A0A072VMA2 | 98.540 | 137 | 2 | 0 | 1 | 137 | 1 | 137 | 1.29e-90 | 268 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004540 | Msa0513260 | 0.812200 | 4.777833e-51 | -8.615850e-47 |
| Msa0010770 | Msa0513260 | 0.816524 | 5.291378e-52 | -8.615850e-47 |
| Msa0017390 | Msa0513260 | 0.803337 | 3.657896e-49 | -8.615850e-47 |
| Msa0026150 | Msa0513260 | 0.802619 | 5.149024e-49 | -8.615850e-47 |
| Msa0028930 | Msa0513260 | 0.812026 | 5.213646e-51 | -8.615850e-47 |
| Msa0030300 | Msa0513260 | 0.816834 | 4.508288e-52 | -8.615850e-47 |
| Msa0033880 | Msa0513260 | 0.843857 | 1.082764e-58 | -8.615850e-47 |
| Msa0037160 | Msa0513260 | 0.805164 | 1.523602e-49 | -8.615850e-47 |
| Msa0047160 | Msa0513260 | 0.810197 | 1.299520e-50 | -8.615850e-47 |
| Msa0057710 | Msa0513260 | 0.803417 | 3.521125e-49 | -8.615850e-47 |
| Msa0065550 | Msa0513260 | 0.807924 | 3.984792e-50 | -8.615850e-47 |
| Msa0070430 | Msa0513260 | 0.802423 | 5.649881e-49 | -8.615850e-47 |
| Msa0077900 | Msa0513260 | 0.824500 | 7.803388e-54 | -8.615850e-47 |
| Msa0080830 | Msa0513260 | 0.802964 | 4.370093e-49 | -8.615850e-47 |
| Msa0081210 | Msa0513260 | 0.927042 | 2.037609e-91 | -8.615850e-47 |
| Msa0087800 | Msa0513260 | 0.800611 | 1.328812e-48 | -8.615850e-47 |
| Msa0096580 | Msa0513260 | 0.810923 | 9.054904e-51 | -8.615850e-47 |
| Msa0097950 | Msa0513260 | 0.823908 | 1.074804e-53 | -8.615850e-47 |
| Msa0101180 | Msa0513260 | 0.801821 | 7.514621e-49 | -8.615850e-47 |
| Msa0105520 | Msa0513260 | 0.813263 | 2.796196e-51 | -8.615850e-47 |
| Msa0108870 | Msa0513260 | 0.805347 | 1.394525e-49 | -8.615850e-47 |
| Msa0124450 | Msa0513260 | 0.812783 | 3.564189e-51 | -8.615850e-47 |
| Msa0126770 | Msa0513260 | 0.814780 | 1.293841e-51 | -8.615850e-47 |
| Msa0127040 | Msa0513260 | 0.817424 | 3.322008e-52 | -8.615850e-47 |
| Msa0127100 | Msa0513260 | 0.810043 | 1.402584e-50 | -8.615850e-47 |
| Msa0127850 | Msa0513260 | 0.838997 | 2.061841e-57 | -8.615850e-47 |
| Msa0136120 | Msa0513260 | 0.800123 | 1.670646e-48 | -8.615850e-47 |
| Msa0146770 | Msa0513260 | 0.800802 | 1.214776e-48 | -8.615850e-47 |
| Msa0147980 | Msa0513260 | 0.801372 | 9.289806e-49 | -8.615850e-47 |
| Msa0167480 | Msa0513260 | 0.803231 | 3.847970e-49 | -8.615850e-47 |
| Msa0171850 | Msa0513260 | 0.807330 | 5.328995e-50 | -8.615850e-47 |
| Msa0174000 | Msa0513260 | 0.843133 | 1.689774e-58 | -8.615850e-47 |
| Msa0177210 | Msa0513260 | 0.811918 | 5.504507e-51 | -8.615850e-47 |
| Msa0181230 | Msa0513260 | 0.801017 | 1.097939e-48 | -8.615850e-47 |
| Msa0202110 | Msa0513260 | 0.801786 | 7.638587e-49 | -8.615850e-47 |
| Msa0202410 | Msa0513260 | 0.801151 | 1.030626e-48 | -8.615850e-47 |
| Msa0231100 | Msa0513260 | 0.819355 | 1.212964e-52 | -8.615850e-47 |
| Msa0231660 | Msa0513260 | 0.801747 | 7.782864e-49 | -8.615850e-47 |
| Msa0365860 | Msa0513260 | 0.808749 | 2.657443e-50 | -8.615850e-47 |
| Msa0372810 | Msa0513260 | 0.810606 | 1.060514e-50 | -8.615850e-47 |
| Msa0378970 | Msa0513260 | 0.829063 | 6.346102e-55 | -8.615850e-47 |
| Msa0384670 | Msa0513260 | 0.837541 | 4.890003e-57 | -8.615850e-47 |
| Msa0410300 | Msa0513260 | 0.802343 | 5.869059e-49 | -8.615850e-47 |
| Msa0413730 | Msa0513260 | 0.802091 | 6.612017e-49 | -8.615850e-47 |
| Msa0419720 | Msa0513260 | 0.830505 | 2.827475e-55 | -8.615850e-47 |
| Msa0434570 | Msa0513260 | 0.815523 | 8.850771e-52 | -8.615850e-47 |
| Msa0434770 | Msa0513260 | 0.816570 | 5.166567e-52 | -8.615850e-47 |
| Msa0436200 | Msa0513260 | 0.828899 | 6.955003e-55 | -8.615850e-47 |
| Msa0461590 | Msa0513260 | 0.827472 | 1.535375e-54 | -8.615850e-47 |
| Msa0474700 | Msa0513260 | 0.812146 | 4.908970e-51 | -8.615850e-47 |
| Msa0478580 | Msa0513260 | 0.812755 | 3.614441e-51 | -8.615850e-47 |
| Msa0480780 | Msa0513260 | 0.807289 | 5.436878e-50 | -8.615850e-47 |
| Msa0241830 | Msa0513260 | 0.814462 | 1.521615e-51 | -8.615850e-47 |
| Msa0262480 | Msa0513260 | 0.813842 | 2.085931e-51 | -8.615850e-47 |
| Msa0275360 | Msa0513260 | 0.805402 | 1.358537e-49 | -8.615850e-47 |
| Msa0300350 | Msa0513260 | 0.804763 | 1.848166e-49 | -8.615850e-47 |
| Msa0322900 | Msa0513260 | 0.815107 | 1.095065e-51 | -8.615850e-47 |
| Msa0341690 | Msa0513260 | 0.802222 | 6.213910e-49 | -8.615850e-47 |
| Msa0343190 | Msa0513260 | 0.831501 | 1.610990e-55 | -8.615850e-47 |
| Msa0511770 | Msa0513260 | 0.837726 | 4.385769e-57 | -8.615850e-47 |
| Msa0513260 | Msa0517640 | 0.821331 | 4.272870e-53 | -8.615850e-47 |
| Msa0513260 | Msa0518030 | 0.823986 | 1.030709e-53 | -8.615850e-47 |
| Msa0513260 | Msa0521670 | 0.802636 | 5.107547e-49 | -8.615850e-47 |
| Msa0513260 | Msa0524590 | 0.817979 | 2.489525e-52 | -8.615850e-47 |
| Msa0513260 | Msa0531250 | 0.815836 | 7.538164e-52 | -8.615850e-47 |
| Msa0513260 | Msa0547990 | 0.852257 | 5.199553e-61 | -8.615850e-47 |
| Msa0513260 | Msa0550540 | 0.808186 | 3.505575e-50 | -8.615850e-47 |
| Msa0513260 | Msa0550570 | 0.815951 | 7.105793e-52 | -8.615850e-47 |
| Msa0513260 | Msa0554290 | 0.800550 | 1.367132e-48 | -8.615850e-47 |
| Msa0513260 | Msa0556010 | 0.806765 | 7.018578e-50 | -8.615850e-47 |
| Msa0513260 | Msa0581280 | 0.802431 | 5.628576e-49 | -8.615850e-47 |
| Msa0513260 | Msa0583500 | 0.809064 | 2.275464e-50 | -8.615850e-47 |
| Msa0513260 | Msa0586850 | 0.800926 | 1.146243e-48 | -8.615850e-47 |
| Msa0513260 | Msa0588090 | 0.806503 | 7.972080e-50 | -8.615850e-47 |
| Msa0513260 | Msa0593700 | 0.804885 | 1.742914e-49 | -8.615850e-47 |
| Msa0513260 | Msa0603670 | 0.800425 | 1.450022e-48 | -8.615850e-47 |
| Msa0513260 | Msa0618930 | 0.805603 | 1.232896e-49 | -8.615850e-47 |
| Msa0513260 | Msa0618950 | 0.811285 | 7.556555e-51 | -8.615850e-47 |
| Msa0513260 | Msa0628420 | 0.813345 | 2.682777e-51 | -8.615850e-47 |
| Msa0513260 | Msa0644030 | 0.838154 | 3.404459e-57 | -8.615850e-47 |
| Msa0513260 | Msa0662630 | 0.801477 | 8.839003e-49 | -8.615850e-47 |
| Msa0513260 | Msa0666230 | 0.808143 | 3.579193e-50 | -8.615850e-47 |
| Msa0513260 | Msa0673270 | 0.803478 | 3.420696e-49 | -8.615850e-47 |
| Msa0513260 | Msa0694990 | 0.817759 | 2.790760e-52 | -8.615850e-47 |
| Msa0513260 | Msa0695130 | 0.823679 | 1.216446e-53 | -8.615850e-47 |
| Msa0513260 | Msa0705390 | 0.822075 | 2.875157e-53 | -8.615850e-47 |
| Msa0513260 | Msa0712560 | 0.826065 | 3.327182e-54 | -8.615850e-47 |
| Msa0513260 | Msa0744090 | 0.801932 | 7.130936e-49 | -8.615850e-47 |
| Msa0513260 | Msa0744100 | 0.812353 | 4.424787e-51 | -8.615850e-47 |
| Msa0513260 | Msa0748920 | 0.801633 | 8.213680e-49 | -8.615850e-47 |
| Msa0513260 | Msa0751010 | 0.802649 | 5.076014e-49 | -8.615850e-47 |
| Msa0513260 | Msa0756930 | 0.837070 | 6.455804e-57 | -8.615850e-47 |
| Msa0513260 | Msa0765510 | 0.812426 | 4.266216e-51 | -8.615850e-47 |
| Msa0513260 | Msa0794050 | 0.803666 | 3.126947e-49 | -8.615850e-47 |
| Msa0513260 | Msa0818770 | 0.802183 | 6.332092e-49 | -8.615850e-47 |
| Msa0513260 | Msa0825270 | 0.813518 | 2.458193e-51 | -8.615850e-47 |
| Msa0513260 | Msa0825280 | 0.804060 | 2.589345e-49 | -8.615850e-47 |
| Msa0513260 | Msa0826150 | 0.800108 | 1.682415e-48 | -8.615850e-47 |
| Msa0513260 | Msa0826500 | 0.821334 | 4.267387e-53 | -8.615850e-47 |
| Msa0513260 | Msa0830390 | 0.803239 | 3.833761e-49 | -8.615850e-47 |
| Msa0513260 | Msa0833190 | -0.806445 | 8.197298e-50 | -8.615850e-47 |
| Msa0513260 | Msa0836500 | 0.833317 | 5.715276e-56 | -8.615850e-47 |
| Msa0513260 | Msa0849440 | 0.803694 | 3.084779e-49 | -8.615850e-47 |
| Msa0513260 | Msa0850150 | 0.806931 | 6.470952e-50 | -8.615850e-47 |
| Msa0513260 | Msa0851470 | 0.801704 | 7.940667e-49 | -8.615850e-47 |
| Msa0513260 | Msa0869010 | 0.808589 | 2.874929e-50 | -8.615850e-47 |
| Msa0513260 | Msa0879850 | 0.810031 | 1.410770e-50 | -8.615850e-47 |
| Msa0513260 | Msa0888940 | 0.815133 | 1.080562e-51 | -8.615850e-47 |
| Msa0513260 | Msa0892640 | 0.819342 | 1.221291e-52 | -8.615850e-47 |
| Msa0513260 | Msa0901110 | 0.801242 | 9.875040e-49 | -8.615850e-47 |
| Msa0513260 | Msa0903780 | 0.803704 | 3.070110e-49 | -8.615850e-47 |
| Msa0513260 | Msa0905990 | 0.819833 | 9.436335e-53 | -8.615850e-47 |
| Msa0513260 | Msa0944200 | 0.810678 | 1.023092e-50 | -8.615850e-47 |
| Msa0513260 | Msa0944660 | 0.804958 | 1.682734e-49 | -8.615850e-47 |
| Msa0513260 | Msa0945240 | 0.806814 | 6.850574e-50 | -8.615850e-47 |
| Msa0513260 | Msa0947530 | -0.814509 | 1.485672e-51 | -8.615850e-47 |
| Msa0513260 | Msa0980940 | 0.809446 | 1.885012e-50 | -8.615850e-47 |
| Msa0513260 | Msa0981430 | 0.812509 | 4.089889e-51 | -8.615850e-47 |
| Msa0513260 | Msa1027250 | 0.824189 | 9.234075e-54 | -8.615850e-47 |
| Msa0513260 | Msa1027300 | 0.809661 | 1.694783e-50 | -8.615850e-47 |
| Msa0513260 | Msa1070390 | 0.822230 | 2.647495e-53 | -8.615850e-47 |
| Msa0513260 | Msa1089320 | 0.805431 | 1.339487e-49 | -8.615850e-47 |
| Msa0513260 | Msa1127590 | 0.829263 | 5.675118e-55 | -8.615850e-47 |
| Msa0513260 | Msa1129690 | 0.800894 | 1.163618e-48 | -8.615850e-47 |
| Msa0513260 | Msa1145240 | 0.801438 | 9.002997e-49 | -8.615850e-47 |
| Msa0513260 | Msa1158230 | 0.833512 | 5.112036e-56 | -8.615850e-47 |
| Msa0513260 | Msa1165780 | 0.811811 | 5.809492e-51 | -8.615850e-47 |
| Msa0513260 | Msa1173900 | 0.832399 | 9.664330e-56 | -8.615850e-47 |
| Msa0513260 | Msa1178060 | 0.806495 | 7.999894e-50 | -8.615850e-47 |
| Msa0513260 | Msa1179980 | 0.800627 | 1.319133e-48 | -8.615850e-47 |
| Msa0513260 | Msa1201830 | 0.804840 | 1.781017e-49 | -8.615850e-47 |
| Msa0513260 | Msa1202580 | 0.817787 | 2.751171e-52 | -8.615850e-47 |
| Msa0513260 | Msa1206160 | 0.806245 | 9.033342e-50 | -8.615850e-47 |
| Msa0513260 | Msa1206310 | 0.813881 | 2.044555e-51 | -8.615850e-47 |
| Msa0513260 | Msa1206650 | 0.816445 | 5.509135e-52 | -8.615850e-47 |
| Msa0513260 | Msa1211830 | 0.805701 | 1.175387e-49 | -8.615850e-47 |
| Msa0513260 | Msa1223330 | 0.810908 | 9.119875e-51 | -8.615850e-47 |
| Msa0513260 | Msa1226610 | 0.816141 | 6.442452e-52 | -8.615850e-47 |
| Msa0513260 | Msa1265590 | 0.801460 | 8.912092e-49 | -8.615850e-47 |
| Msa0513260 | Msa1265630 | 0.813416 | 2.588043e-51 | -8.615850e-47 |
| Msa0513260 | Msa1270620 | 0.809002 | 2.346007e-50 | -8.615850e-47 |
| Msa0513260 | Msa1270690 | 0.803816 | 2.910686e-49 | -8.615850e-47 |
| Msa0513260 | Msa1278900 | 0.804349 | 2.254651e-49 | -8.615850e-47 |
| Msa0513260 | Msa1294960 | 0.833435 | 5.342176e-56 | -8.615850e-47 |
| Msa0513260 | Msa1304860 | 0.802374 | 5.784002e-49 | -8.615850e-47 |
| Msa0513260 | Msa1320820 | 0.801397 | 9.179093e-49 | -8.615850e-47 |
| Msa0513260 | Msa1329450 | 0.815069 | 1.116856e-51 | -8.615850e-47 |
| Msa0513260 | Msa1333970 | 0.813861 | 2.065336e-51 | -8.615850e-47 |
| Msa0513260 | Msa1348650 | -0.827814 | 1.270514e-54 | -8.615850e-47 |
| Msa0513260 | Msa1351540 | 0.829279 | 5.626950e-55 | -8.615850e-47 |
| Msa0513260 | Msa1355700 | 0.809237 | 2.089699e-50 | -8.615850e-47 |
| Msa0513260 | Msa1359560 | 0.804889 | 1.739637e-49 | -8.615850e-47 |
| Msa0513260 | Msa1364210 | 0.805383 | 1.371038e-49 | -8.615850e-47 |
| Msa0513260 | Msa1373820 | 0.811228 | 7.776230e-51 | -8.615850e-47 |
| Msa0513260 | Msa1381480 | 0.830846 | 2.333819e-55 | -8.615850e-47 |
| Msa0513260 | Msa1383530 | 0.816095 | 6.597011e-52 | -8.615850e-47 |
| Msa0513260 | Msa1395730 | 0.807165 | 5.773642e-50 | -8.615850e-47 |
| Msa0513260 | Msa1411950 | 0.826817 | 2.202813e-54 | -8.615850e-47 |
| Msa0513260 | Msa1412660 | 0.919462 | 4.370120e-87 | -8.615850e-47 |
| Msa0513260 | Msa1416370 | 0.878834 | 2.036693e-69 | -8.615850e-47 |
| Msa0513260 | Msa1432480 | 0.803926 | 2.760402e-49 | -8.615850e-47 |
| Msa0513260 | Msa1437270 | 0.801408 | 9.131243e-49 | -8.615850e-47 |
| Msa0513260 | Msa1450720 | 0.803665 | 3.127921e-49 | -8.615850e-47 |
| Msa0513260 | Msa1454680 | 0.804681 | 1.921999e-49 | -8.615850e-47 |
| Msa0513260 | Msa1458810 | 0.800686 | 1.282845e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513260 | MtrunA17_Chr1g0193561 | 98.540 | 137 | 2 | 0 | 1 | 137 | 1 | 137 | 2.48e-94 | 268 |
| Msa0513260 | MtrunA17_Chr4g0066341 | 97.810 | 137 | 2 | 1 | 1 | 137 | 1 | 136 | 1.35e-91 | 261 |
| Msa0513260 | MtrunA17_Chr1g0193621 | 91.489 | 141 | 7 | 2 | 1 | 137 | 1 | 140 | 1.32e-86 | 248 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0513260 | AT5G03050.2 | 58.730 | 126 | 47 | 2 | 10 | 132 | 11 | 134 | 1.49e-42 | 137 |
| Msa0513260 | AT5G03050.1 | 58.730 | 126 | 47 | 2 | 10 | 132 | 11 | 134 | 1.49e-42 | 137 |
Find 42 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAATACTTGGGCTGTTT+TGG | 0.199624 | 3_4:-63531411 | Msa0513260:three_prime_UTR |
| AATATCCAATTCATTTCTAT+TGG | 0.230794 | 3_4:-63531382 | Msa0513260:three_prime_UTR |
| ATCAGGGAAAACAATGTTTA+AGG | 0.261813 | 3_4:-63531756 | Msa0513260:CDS |
| ATTCAAAATTCATTCAGATT+TGG | 0.295741 | 3_4:-63533236 | Msa0513260:five_prime_UTR |
| TGCATAACTCTTGGAATACT+TGG | 0.322190 | 3_4:-63531421 | Msa0513260:three_prime_UTR |
| CCACGTTTGGTTAATCTTGT+TGG | 0.333278 | 3_4:-63531298 | Msa0513260:three_prime_UTR |
| GTATCTGAGCTCTTGGAATC+AGG | 0.345471 | 3_4:-63531773 | Msa0513260:CDS |
| ATATCCAATTCATTTCTATT+GGG | 0.345862 | 3_4:-63531381 | Msa0513260:three_prime_UTR |
| CCAAGTTGGGTCTGAAGAAA+TGG | 0.369614 | 3_4:-63531946 | Msa0513260:CDS |
| ACAGCCCAATAGAAATGAAT+TGG | 0.384691 | 3_4:+63531377 | None:intergenic |
| AGCATTAGCTTCCTCATTTG+AGG | 0.397998 | 3_4:+63531526 | None:intergenic |
| TAACCAATGTCAGCTCAAAA+AGG | 0.399910 | 3_4:-63532187 | Msa0513260:exon |
| GGTTAATCTTGTTGGAGGTA+TGG | 0.415303 | 3_4:-63531290 | Msa0513260:three_prime_UTR |
| TATTCATGAGTCACCACGTT+TGG | 0.429549 | 3_4:-63531311 | Msa0513260:three_prime_UTR |
| CTTGTAGGTATCTGAGCTCT+TGG | 0.437315 | 3_4:-63531780 | Msa0513260:intron |
| CCATTTCTTCAGACCCAACT+TGG | 0.441813 | 3_4:+63531946 | None:intergenic |
| CTAGGTATATGCATAACTCT+TGG | 0.455507 | 3_4:-63531430 | Msa0513260:three_prime_UTR |
| CTGATTGTTGGAGTCAGAGA+AGG | 0.467815 | 3_4:+63533174 | None:intergenic |
| AAGCAGGATTCACAAGGAAC+AGG | 0.472958 | 3_4:-63531594 | Msa0513260:intron |
| CAACAATCAGAAAACCTAAC+CGG | 0.491910 | 3_4:-63533161 | Msa0513260:intron |
| GGTTTGAGACTAACCAAGTT+GGG | 0.494830 | 3_4:-63531959 | Msa0513260:CDS |
| TATCTGAGCTCTTGGAATCA+GGG | 0.503680 | 3_4:-63531772 | Msa0513260:CDS |
| GCATGGACAGTGGAGCTTCA+AGG | 0.522029 | 3_4:-63532162 | Msa0513260:CDS |
| CGTTTGGTTAATCTTGTTGG+AGG | 0.523553 | 3_4:-63531295 | Msa0513260:three_prime_UTR |
| TCAAGGAAACGTATGAAACC+TGG | 0.524964 | 3_4:-63532145 | Msa0513260:CDS |
| ATCGCAGATTGTCCTTGTAC+AGG | 0.525946 | 3_4:-63531988 | Msa0513260:CDS |
| CAAACCCTTCCTCCTGTACA+AGG | 0.529759 | 3_4:+63531976 | None:intergenic |
| ATTGTCCTTGTACAGGAGGA+AGG | 0.538219 | 3_4:-63531981 | Msa0513260:CDS |
| TTGTCCTTGTACAGGAGGAA+GGG | 0.558464 | 3_4:-63531980 | Msa0513260:CDS |
| TTAAAGAATTCAATAAACAT+TGG | 0.560206 | 3_4:+63531204 | None:intergenic |
| CAAGGAAACGTATGAAACCT+GGG | 0.567520 | 3_4:-63532144 | Msa0513260:CDS |
| AGTTGCCTCATGTCATGTCT+AGG | 0.572968 | 3_4:-63531448 | Msa0513260:three_prime_UTR |
| TGATTGTTGGAGTCAGAGAA+GGG | 0.577575 | 3_4:+63533175 | None:intergenic |
| GCATAACTCTTGGAATACTT+GGG | 0.586646 | 3_4:-63531420 | Msa0513260:three_prime_UTR |
| TCAAATAAGCAGGATTCACA+AGG | 0.592512 | 3_4:-63531600 | Msa0513260:intron |
| GGGCTGGCATTTCAGAAACA+AGG | 0.596580 | 3_4:-63531227 | Msa0513260:three_prime_UTR |
| GGGTTTGAGACTAACCAAGT+TGG | 0.597415 | 3_4:-63531960 | Msa0513260:CDS |
| TGCACTTGATGCCTCAAATG+AGG | 0.607261 | 3_4:-63531537 | Msa0513260:CDS |
| GCAGATTGTCCTTGTACAGG+AGG | 0.643938 | 3_4:-63531985 | Msa0513260:CDS |
| CCAACAAGATTAACCAAACG+TGG | 0.656398 | 3_4:+63531298 | None:intergenic |
| AAGGAAACGTATGAAACCTG+GGG | 0.689052 | 3_4:-63532143 | Msa0513260:intron |
| ATATACCTAGACATGACATG+AGG | 0.734630 | 3_4:+63531443 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAATATCTGATTAATTTA+TGG | - | chr3_4:63531433-63531452 | Msa0513260:three_prime_UTR | 15.0% |
| !! | ATTCATCAATTAAACAAAAA+CGG | + | chr3_4:63531739-63531758 | None:intergenic | 15.0% |
| !!! | TTTTAGATTTTGAGTATTTT+TGG | - | chr3_4:63531793-63531812 | Msa0513260:intron | 15.0% |
| !! | AAGTTTGAATTATAATTTCT+AGG | + | chr3_4:63532287-63532306 | None:intergenic | 15.0% |
| !! | TTAAAGAATTCAATAAACAT+TGG | + | chr3_4:63533311-63533330 | None:intergenic | 15.0% |
| !! | TTCAATATCTGATTAATTTA+TGG | - | chr3_4:63531433-63531452 | Msa0513260:three_prime_UTR | 15.0% |
| !! | ATTCATCAATTAAACAAAAA+CGG | + | chr3_4:63531739-63531758 | None:intergenic | 15.0% |
| !!! | TTTTAGATTTTGAGTATTTT+TGG | - | chr3_4:63531793-63531812 | Msa0513260:intron | 15.0% |
| !! | AAGTTTGAATTATAATTTCT+AGG | + | chr3_4:63532287-63532306 | None:intergenic | 15.0% |
| !! | TTAAAGAATTCAATAAACAT+TGG | + | chr3_4:63533311-63533330 | None:intergenic | 15.0% |
| !! | ATTCAAAATTCATTCAGATT+TGG | - | chr3_4:63531276-63531295 | Msa0513260:three_prime_UTR | 20.0% |
| !! | TTCATCAATTAAACAAAAAC+GGG | + | chr3_4:63531738-63531757 | None:intergenic | 20.0% |
| !! | CAAATAAGTCAATATAAACA+GGG | + | chr3_4:63531914-63531933 | None:intergenic | 20.0% |
| !! | TCAAATAAGTCAATATAAAC+AGG | + | chr3_4:63531915-63531934 | None:intergenic | 20.0% |
| !!! | ATGTTTGAAATGTTTAATTG+TGG | - | chr3_4:63532705-63532724 | Msa0513260:intron | 20.0% |
| !! | TTTAAACATTGAATGTTCAA+TGG | + | chr3_4:63532832-63532851 | None:intergenic | 20.0% |
| !!! | TGTTAGTTTTTGACTTTTTA+TGG | - | chr3_4:63532872-63532891 | Msa0513260:intron | 20.0% |
| !! | AATATCCAATTCATTTCTAT+TGG | - | chr3_4:63533130-63533149 | Msa0513260:intron | 20.0% |
| !! | ATATCCAATTCATTTCTATT+GGG | - | chr3_4:63533131-63533150 | Msa0513260:intron | 20.0% |
| !! | ATTCAAAATTCATTCAGATT+TGG | - | chr3_4:63531276-63531295 | Msa0513260:three_prime_UTR | 20.0% |
| !! | TTCATCAATTAAACAAAAAC+GGG | + | chr3_4:63531738-63531757 | None:intergenic | 20.0% |
| !! | CAAATAAGTCAATATAAACA+GGG | + | chr3_4:63531914-63531933 | None:intergenic | 20.0% |
| !! | TCAAATAAGTCAATATAAAC+AGG | + | chr3_4:63531915-63531934 | None:intergenic | 20.0% |
| !!! | ATGTTTGAAATGTTTAATTG+TGG | - | chr3_4:63532705-63532724 | Msa0513260:intron | 20.0% |
| !! | TTTAAACATTGAATGTTCAA+TGG | + | chr3_4:63532832-63532851 | None:intergenic | 20.0% |
| !!! | TGTTAGTTTTTGACTTTTTA+TGG | - | chr3_4:63532872-63532891 | Msa0513260:intron | 20.0% |
| !! | AATATCCAATTCATTTCTAT+TGG | - | chr3_4:63533130-63533149 | Msa0513260:intron | 20.0% |
| !! | ATATCCAATTCATTTCTATT+GGG | - | chr3_4:63533131-63533150 | Msa0513260:intron | 20.0% |
| ! | TATGATATAAGCATTCTGTT+TGG | - | chr3_4:63531530-63531549 | Msa0513260:CDS | 25.0% |
| !! | GATGAATTTTCTACATGTTT+TGG | - | chr3_4:63531752-63531771 | Msa0513260:CDS | 25.0% |
| ! | AATTCACTTCAAACTTATAC+TGG | + | chr3_4:63531877-63531896 | None:intergenic | 25.0% |
| ! | AAGTTATTATGAAAGTAAGC+TGG | + | chr3_4:63532019-63532038 | None:intergenic | 25.0% |
| ! | CAAATAAGCAATTCCAAATA+GGG | + | chr3_4:63532081-63532100 | None:intergenic | 25.0% |
| ! | TCAAATAAGCAATTCCAAAT+AGG | + | chr3_4:63532082-63532101 | None:intergenic | 25.0% |
| !! | CTTTTCTTTTCACAATAAAC+AGG | - | chr3_4:63532470-63532489 | Msa0513260:intron | 25.0% |
| ! | TTTAATTGTGGATTTCTTGT+AGG | - | chr3_4:63532717-63532736 | Msa0513260:intron | 25.0% |
| !!! | CTTTTAACTTTCAAATAAGC+AGG | - | chr3_4:63532902-63532921 | Msa0513260:intron | 25.0% |
| ! | TATGATATAAGCATTCTGTT+TGG | - | chr3_4:63531530-63531549 | Msa0513260:CDS | 25.0% |
| !! | GATGAATTTTCTACATGTTT+TGG | - | chr3_4:63531752-63531771 | Msa0513260:CDS | 25.0% |
| ! | AATTCACTTCAAACTTATAC+TGG | + | chr3_4:63531877-63531896 | None:intergenic | 25.0% |
| ! | AAGTTATTATGAAAGTAAGC+TGG | + | chr3_4:63532019-63532038 | None:intergenic | 25.0% |
| ! | CAAATAAGCAATTCCAAATA+GGG | + | chr3_4:63532081-63532100 | None:intergenic | 25.0% |
| ! | TCAAATAAGCAATTCCAAAT+AGG | + | chr3_4:63532082-63532101 | None:intergenic | 25.0% |
| !! | CTTTTCTTTTCACAATAAAC+AGG | - | chr3_4:63532470-63532489 | Msa0513260:intron | 25.0% |
| ! | TTTAATTGTGGATTTCTTGT+AGG | - | chr3_4:63532717-63532736 | Msa0513260:intron | 25.0% |
| !!! | CTTTTAACTTTCAAATAAGC+AGG | - | chr3_4:63532902-63532921 | Msa0513260:intron | 25.0% |
| !!! | GCGCATTTCAAATTTTGATT+GGG | - | chr3_4:63531238-63531257 | Msa0513260:three_prime_UTR | 30.0% |
| !!! | TTTCGATTTGGTTTTTGCAT+TGG | - | chr3_4:63531553-63531572 | Msa0513260:CDS | 30.0% |
| ! | GATTCGAATCTTCAGATTTT+TGG | - | chr3_4:63531702-63531721 | Msa0513260:intron | 30.0% |
| ! | CTAACATAACTTTTGTGAGA+CGG | - | chr3_4:63531944-63531963 | Msa0513260:CDS | 30.0% |
| CTATAAGCTGCAAATTTAAG+TGG | - | chr3_4:63532247-63532266 | Msa0513260:intron | 30.0% | |
| !!! | CAAACTTGTTTTATACCTGT+AGG | - | chr3_4:63532300-63532319 | Msa0513260:intron | 30.0% |
| ATGACGAGAAAAATGTTGAA+AGG | + | chr3_4:63532410-63532429 | None:intergenic | 30.0% | |
| ! | AGATTGAGAATTTTACTCAG+AGG | - | chr3_4:63532616-63532635 | Msa0513260:intron | 30.0% |
| ! | GATTGAGAATTTTACTCAGA+GGG | - | chr3_4:63532617-63532636 | Msa0513260:intron | 30.0% |
| ATCAGGGAAAACAATGTTTA+AGG | - | chr3_4:63532756-63532775 | Msa0513260:intron | 30.0% | |
| !!! | ATCTGTAGCATTTTAGTTTG+AGG | - | chr3_4:63533264-63533283 | Msa0513260:five_prime_UTR | 30.0% |
| !!! | TCTGTAGCATTTTAGTTTGA+GGG | - | chr3_4:63533265-63533284 | Msa0513260:five_prime_UTR | 30.0% |
| !!! | GCGCATTTCAAATTTTGATT+GGG | - | chr3_4:63531238-63531257 | Msa0513260:three_prime_UTR | 30.0% |
| !!! | TTTCGATTTGGTTTTTGCAT+TGG | - | chr3_4:63531553-63531572 | Msa0513260:CDS | 30.0% |
| ! | GATTCGAATCTTCAGATTTT+TGG | - | chr3_4:63531702-63531721 | Msa0513260:intron | 30.0% |
| ! | CTAACATAACTTTTGTGAGA+CGG | - | chr3_4:63531944-63531963 | Msa0513260:CDS | 30.0% |
| CTATAAGCTGCAAATTTAAG+TGG | - | chr3_4:63532247-63532266 | Msa0513260:intron | 30.0% | |
| !!! | CAAACTTGTTTTATACCTGT+AGG | - | chr3_4:63532300-63532319 | Msa0513260:intron | 30.0% |
| ATGACGAGAAAAATGTTGAA+AGG | + | chr3_4:63532410-63532429 | None:intergenic | 30.0% | |
| ! | AGATTGAGAATTTTACTCAG+AGG | - | chr3_4:63532616-63532635 | Msa0513260:intron | 30.0% |
| ! | GATTGAGAATTTTACTCAGA+GGG | - | chr3_4:63532617-63532636 | Msa0513260:intron | 30.0% |
| ATCAGGGAAAACAATGTTTA+AGG | - | chr3_4:63532756-63532775 | Msa0513260:intron | 30.0% | |
| !!! | ATCTGTAGCATTTTAGTTTG+AGG | - | chr3_4:63533264-63533283 | Msa0513260:five_prime_UTR | 30.0% |
| !!! | TCTGTAGCATTTTAGTTTGA+GGG | - | chr3_4:63533265-63533284 | Msa0513260:five_prime_UTR | 30.0% |
| !! | CGCGCATTTCAAATTTTGAT+TGG | - | chr3_4:63531237-63531256 | Msa0513260:three_prime_UTR | 35.0% |
| CAACAATCAGAAAACCTAAC+CGG | - | chr3_4:63531351-63531370 | Msa0513260:three_prime_UTR | 35.0% | |
| !! | TTGAGATGATTTTACCGGTT+AGG | + | chr3_4:63531368-63531387 | None:intergenic | 35.0% |
| ! | AACGGTTGAGATGATTTTAC+CGG | + | chr3_4:63531373-63531392 | None:intergenic | 35.0% |
| AGAGCGAAGAAGATGAAAAA+CGG | + | chr3_4:63531391-63531410 | None:intergenic | 35.0% | |
| ! | CATTCTGTTTGGTTTCGATT+TGG | - | chr3_4:63531541-63531560 | Msa0513260:CDS | 35.0% |
| ! | ATAACTTTTGTGAGACGGTT+TGG | - | chr3_4:63531949-63531968 | Msa0513260:CDS | 35.0% |
| ! | TAACTTTTGTGAGACGGTTT+GGG | - | chr3_4:63531950-63531969 | Msa0513260:CDS | 35.0% |
| AAAACAGCTTAGTCCCTATT+TGG | - | chr3_4:63532065-63532084 | Msa0513260:intron | 35.0% | |
| ! | GTTTTGTGAGACTATTTGAG+AGG | - | chr3_4:63532120-63532139 | Msa0513260:intron | 35.0% |
| TAACCAATGTCAGCTCAAAA+AGG | - | chr3_4:63532325-63532344 | Msa0513260:intron | 35.0% | |
| TCAAATAAGCAGGATTCACA+AGG | - | chr3_4:63532912-63532931 | Msa0513260:intron | 35.0% | |
| ! | ACAAGGAACAGGTTGAAAAA+TGG | - | chr3_4:63532929-63532948 | Msa0513260:intron | 35.0% |
| ATATACCTAGACATGACATG+AGG | + | chr3_4:63533072-63533091 | None:intergenic | 35.0% | |
| CTAGGTATATGCATAACTCT+TGG | - | chr3_4:63533082-63533101 | Msa0513260:intron | 35.0% | |
| TGCATAACTCTTGGAATACT+TGG | - | chr3_4:63533091-63533110 | Msa0513260:intron | 35.0% | |
| GCATAACTCTTGGAATACTT+GGG | - | chr3_4:63533092-63533111 | Msa0513260:intron | 35.0% | |
| ACAGCCCAATAGAAATGAAT+TGG | + | chr3_4:63533138-63533157 | None:intergenic | 35.0% | |
| !! | CGCGCATTTCAAATTTTGAT+TGG | - | chr3_4:63531237-63531256 | Msa0513260:three_prime_UTR | 35.0% |
| CAACAATCAGAAAACCTAAC+CGG | - | chr3_4:63531351-63531370 | Msa0513260:three_prime_UTR | 35.0% | |
| !! | TTGAGATGATTTTACCGGTT+AGG | + | chr3_4:63531368-63531387 | None:intergenic | 35.0% |
| ! | AACGGTTGAGATGATTTTAC+CGG | + | chr3_4:63531373-63531392 | None:intergenic | 35.0% |
| AGAGCGAAGAAGATGAAAAA+CGG | + | chr3_4:63531391-63531410 | None:intergenic | 35.0% | |
| ! | CATTCTGTTTGGTTTCGATT+TGG | - | chr3_4:63531541-63531560 | Msa0513260:CDS | 35.0% |
| ! | ATAACTTTTGTGAGACGGTT+TGG | - | chr3_4:63531949-63531968 | Msa0513260:CDS | 35.0% |
| ! | TAACTTTTGTGAGACGGTTT+GGG | - | chr3_4:63531950-63531969 | Msa0513260:CDS | 35.0% |
| AAAACAGCTTAGTCCCTATT+TGG | - | chr3_4:63532065-63532084 | Msa0513260:intron | 35.0% | |
| ! | GTTTTGTGAGACTATTTGAG+AGG | - | chr3_4:63532120-63532139 | Msa0513260:intron | 35.0% |
| TAACCAATGTCAGCTCAAAA+AGG | - | chr3_4:63532325-63532344 | Msa0513260:intron | 35.0% | |
| TCAAATAAGCAGGATTCACA+AGG | - | chr3_4:63532912-63532931 | Msa0513260:intron | 35.0% | |
| ! | ACAAGGAACAGGTTGAAAAA+TGG | - | chr3_4:63532929-63532948 | Msa0513260:intron | 35.0% |
| ATATACCTAGACATGACATG+AGG | + | chr3_4:63533072-63533091 | None:intergenic | 35.0% | |
| CTAGGTATATGCATAACTCT+TGG | - | chr3_4:63533082-63533101 | Msa0513260:intron | 35.0% | |
| TGCATAACTCTTGGAATACT+TGG | - | chr3_4:63533091-63533110 | Msa0513260:intron | 35.0% | |
| GCATAACTCTTGGAATACTT+GGG | - | chr3_4:63533092-63533111 | Msa0513260:intron | 35.0% | |
| ACAGCCCAATAGAAATGAAT+TGG | + | chr3_4:63533138-63533157 | None:intergenic | 35.0% | |
| TGATTGTTGGAGTCAGAGAA+GGG | + | chr3_4:63531340-63531359 | None:intergenic | 40.0% | |
| ! | CGGTTAGGTTTTCTGATTGT+TGG | + | chr3_4:63531353-63531372 | None:intergenic | 40.0% |
| ! | TTGCTTGCTAATGCTTTGCT+AGG | - | chr3_4:63531679-63531698 | Msa0513260:intron | 40.0% |
| ! | TGCTTGCTAATGCTTTGCTA+GGG | - | chr3_4:63531680-63531699 | Msa0513260:intron | 40.0% |
| !! | CTTCCTTTTTGAGCTGACAT+TGG | + | chr3_4:63532331-63532350 | None:intergenic | 40.0% |
| TCAAGGAAACGTATGAAACC+TGG | - | chr3_4:63532367-63532386 | Msa0513260:intron | 40.0% | |
| CAAGGAAACGTATGAAACCT+GGG | - | chr3_4:63532368-63532387 | Msa0513260:intron | 40.0% | |
| AAGGAAACGTATGAAACCTG+GGG | - | chr3_4:63532369-63532388 | Msa0513260:intron | 40.0% | |
| GCGAAAATAACAATTACCCC+AGG | + | chr3_4:63532388-63532407 | None:intergenic | 40.0% | |
| ! | GGTTTGAGACTAACCAAGTT+GGG | - | chr3_4:63532553-63532572 | Msa0513260:intron | 40.0% |
| TATCTGAGCTCTTGGAATCA+GGG | - | chr3_4:63532740-63532759 | Msa0513260:intron | 40.0% | |
| ! | AGCATTAGCTTCCTCATTTG+AGG | + | chr3_4:63532989-63533008 | None:intergenic | 40.0% |
| ! | TTGGAATACTTGGGCTGTTT+TGG | - | chr3_4:63533101-63533120 | Msa0513260:intron | 40.0% |
| TATTCATGAGTCACCACGTT+TGG | - | chr3_4:63533201-63533220 | Msa0513260:five_prime_UTR | 40.0% | |
| CCAACAAGATTAACCAAACG+TGG | + | chr3_4:63533217-63533236 | None:intergenic | 40.0% | |
| CCACGTTTGGTTAATCTTGT+TGG | - | chr3_4:63533214-63533233 | Msa0513260:five_prime_UTR | 40.0% | |
| CGTTTGGTTAATCTTGTTGG+AGG | - | chr3_4:63533217-63533236 | Msa0513260:five_prime_UTR | 40.0% | |
| GGTTAATCTTGTTGGAGGTA+TGG | - | chr3_4:63533222-63533241 | Msa0513260:five_prime_UTR | 40.0% | |
| !!! | TAGCATTTTAGTTTGAGGGC+TGG | - | chr3_4:63533269-63533288 | Msa0513260:five_prime_UTR | 40.0% |
| TGATTGTTGGAGTCAGAGAA+GGG | + | chr3_4:63531340-63531359 | None:intergenic | 40.0% | |
| ! | CGGTTAGGTTTTCTGATTGT+TGG | + | chr3_4:63531353-63531372 | None:intergenic | 40.0% |
| ! | TTGCTTGCTAATGCTTTGCT+AGG | - | chr3_4:63531679-63531698 | Msa0513260:intron | 40.0% |
| ! | TGCTTGCTAATGCTTTGCTA+GGG | - | chr3_4:63531680-63531699 | Msa0513260:intron | 40.0% |
| !! | CTTCCTTTTTGAGCTGACAT+TGG | + | chr3_4:63532331-63532350 | None:intergenic | 40.0% |
| TCAAGGAAACGTATGAAACC+TGG | - | chr3_4:63532367-63532386 | Msa0513260:intron | 40.0% | |
| CAAGGAAACGTATGAAACCT+GGG | - | chr3_4:63532368-63532387 | Msa0513260:intron | 40.0% | |
| AAGGAAACGTATGAAACCTG+GGG | - | chr3_4:63532369-63532388 | Msa0513260:intron | 40.0% | |
| GCGAAAATAACAATTACCCC+AGG | + | chr3_4:63532388-63532407 | None:intergenic | 40.0% | |
| ! | GGTTTGAGACTAACCAAGTT+GGG | - | chr3_4:63532553-63532572 | Msa0513260:intron | 40.0% |
| TATCTGAGCTCTTGGAATCA+GGG | - | chr3_4:63532740-63532759 | Msa0513260:intron | 40.0% | |
| ! | AGCATTAGCTTCCTCATTTG+AGG | + | chr3_4:63532989-63533008 | None:intergenic | 40.0% |
| ! | TTGGAATACTTGGGCTGTTT+TGG | - | chr3_4:63533101-63533120 | Msa0513260:intron | 40.0% |
| TATTCATGAGTCACCACGTT+TGG | - | chr3_4:63533201-63533220 | Msa0513260:five_prime_UTR | 40.0% | |
| CCAACAAGATTAACCAAACG+TGG | + | chr3_4:63533217-63533236 | None:intergenic | 40.0% | |
| CCACGTTTGGTTAATCTTGT+TGG | - | chr3_4:63533214-63533233 | Msa0513260:five_prime_UTR | 40.0% | |
| CGTTTGGTTAATCTTGTTGG+AGG | - | chr3_4:63533217-63533236 | Msa0513260:five_prime_UTR | 40.0% | |
| GGTTAATCTTGTTGGAGGTA+TGG | - | chr3_4:63533222-63533241 | Msa0513260:five_prime_UTR | 40.0% | |
| !!! | TAGCATTTTAGTTTGAGGGC+TGG | - | chr3_4:63533269-63533288 | Msa0513260:five_prime_UTR | 40.0% |
| CTGATTGTTGGAGTCAGAGA+AGG | + | chr3_4:63531341-63531360 | None:intergenic | 45.0% | |
| ! | CTGACATTGGTTAAGCCTAC+AGG | + | chr3_4:63532318-63532337 | None:intergenic | 45.0% |
| GTCAGCTCAAAAAGGAAGCA+TGG | - | chr3_4:63532333-63532352 | Msa0513260:intron | 45.0% | |
| ! | CAAAAAGGAAGCATGGACAG+TGG | - | chr3_4:63532340-63532359 | Msa0513260:intron | 45.0% |
| ATCGCAGATTGTCCTTGTAC+AGG | - | chr3_4:63532524-63532543 | Msa0513260:intron | 45.0% | |
| ATTGTCCTTGTACAGGAGGA+AGG | - | chr3_4:63532531-63532550 | Msa0513260:intron | 45.0% | |
| TTGTCCTTGTACAGGAGGAA+GGG | - | chr3_4:63532532-63532551 | Msa0513260:intron | 45.0% | |
| ! | GGGTTTGAGACTAACCAAGT+TGG | - | chr3_4:63532552-63532571 | Msa0513260:intron | 45.0% |
| CCATTTCTTCAGACCCAACT+TGG | + | chr3_4:63532569-63532588 | None:intergenic | 45.0% | |
| ! | CCAAGTTGGGTCTGAAGAAA+TGG | - | chr3_4:63532566-63532585 | Msa0513260:intron | 45.0% |
| CTTGTAGGTATCTGAGCTCT+TGG | - | chr3_4:63532732-63532751 | Msa0513260:intron | 45.0% | |
| GTATCTGAGCTCTTGGAATC+AGG | - | chr3_4:63532739-63532758 | Msa0513260:intron | 45.0% | |
| AAGCAGGATTCACAAGGAAC+AGG | - | chr3_4:63532918-63532937 | Msa0513260:intron | 45.0% | |
| ! | GGAACAGGTTGAAAAATGGC+AGG | - | chr3_4:63532933-63532952 | Msa0513260:intron | 45.0% |
| TGCACTTGATGCCTCAAATG+AGG | - | chr3_4:63532975-63532994 | Msa0513260:intron | 45.0% | |
| AGTTGCCTCATGTCATGTCT+AGG | - | chr3_4:63533064-63533083 | Msa0513260:intron | 45.0% | |
| CTGATTGTTGGAGTCAGAGA+AGG | + | chr3_4:63531341-63531360 | None:intergenic | 45.0% | |
| ! | CTGACATTGGTTAAGCCTAC+AGG | + | chr3_4:63532318-63532337 | None:intergenic | 45.0% |
| GTCAGCTCAAAAAGGAAGCA+TGG | - | chr3_4:63532333-63532352 | Msa0513260:intron | 45.0% | |
| ! | CAAAAAGGAAGCATGGACAG+TGG | - | chr3_4:63532340-63532359 | Msa0513260:intron | 45.0% |
| ATCGCAGATTGTCCTTGTAC+AGG | - | chr3_4:63532524-63532543 | Msa0513260:intron | 45.0% | |
| ATTGTCCTTGTACAGGAGGA+AGG | - | chr3_4:63532531-63532550 | Msa0513260:intron | 45.0% | |
| TTGTCCTTGTACAGGAGGAA+GGG | - | chr3_4:63532532-63532551 | Msa0513260:intron | 45.0% | |
| ! | GGGTTTGAGACTAACCAAGT+TGG | - | chr3_4:63532552-63532571 | Msa0513260:intron | 45.0% |
| CCATTTCTTCAGACCCAACT+TGG | + | chr3_4:63532569-63532588 | None:intergenic | 45.0% | |
| ! | CCAAGTTGGGTCTGAAGAAA+TGG | - | chr3_4:63532566-63532585 | Msa0513260:intron | 45.0% |
| CTTGTAGGTATCTGAGCTCT+TGG | - | chr3_4:63532732-63532751 | Msa0513260:intron | 45.0% | |
| GTATCTGAGCTCTTGGAATC+AGG | - | chr3_4:63532739-63532758 | Msa0513260:intron | 45.0% | |
| AAGCAGGATTCACAAGGAAC+AGG | - | chr3_4:63532918-63532937 | Msa0513260:intron | 45.0% | |
| ! | GGAACAGGTTGAAAAATGGC+AGG | - | chr3_4:63532933-63532952 | Msa0513260:intron | 45.0% |
| TGCACTTGATGCCTCAAATG+AGG | - | chr3_4:63532975-63532994 | Msa0513260:intron | 45.0% | |
| AGTTGCCTCATGTCATGTCT+AGG | - | chr3_4:63533064-63533083 | Msa0513260:intron | 45.0% | |
| GCAGATTGTCCTTGTACAGG+AGG | - | chr3_4:63532527-63532546 | Msa0513260:intron | 50.0% | |
| CAAACCCTTCCTCCTGTACA+AGG | + | chr3_4:63532539-63532558 | None:intergenic | 50.0% | |
| ! | GGGCTGGCATTTCAGAAACA+AGG | - | chr3_4:63533285-63533304 | Msa0513260:five_prime_UTR | 50.0% |
| GCAGATTGTCCTTGTACAGG+AGG | - | chr3_4:63532527-63532546 | Msa0513260:intron | 50.0% | |
| CAAACCCTTCCTCCTGTACA+AGG | + | chr3_4:63532539-63532558 | None:intergenic | 50.0% | |
| ! | GGGCTGGCATTTCAGAAACA+AGG | - | chr3_4:63533285-63533304 | Msa0513260:five_prime_UTR | 50.0% |
| GCATGGACAGTGGAGCTTCA+AGG | - | chr3_4:63532350-63532369 | Msa0513260:intron | 55.0% | |
| GCATGGACAGTGGAGCTTCA+AGG | - | chr3_4:63532350-63532369 | Msa0513260:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 63531201 | 63533333 | 63531201 | ID=Msa0513260;Name=Msa0513260 |
| chr3_4 | mRNA | 63531201 | 63533333 | 63531201 | ID=Msa0513260-mRNA-1;Parent=Msa0513260;Name=Msa0513260-mRNA-1;_AED=0.06;_eAED=0.06;_QI=181|1|1|1|0.75|0.6|5|277|137 |
| chr3_4 | exon | 63531201 | 63531610 | 63531201 | ID=Msa0513260-mRNA-1:exon:15887;Parent=Msa0513260-mRNA-1 |
| chr3_4 | exon | 63531722 | 63531795 | 63531722 | ID=Msa0513260-mRNA-1:exon:15886;Parent=Msa0513260-mRNA-1 |
| chr3_4 | exon | 63531896 | 63532042 | 63531896 | ID=Msa0513260-mRNA-1:exon:15885;Parent=Msa0513260-mRNA-1 |
| chr3_4 | exon | 63532144 | 63532212 | 63532144 | ID=Msa0513260-mRNA-1:exon:15884;Parent=Msa0513260-mRNA-1 |
| chr3_4 | exon | 63533162 | 63533333 | 63533162 | ID=Msa0513260-mRNA-1:exon:15883;Parent=Msa0513260-mRNA-1 |
| chr3_4 | five_prime_UTR | 63533162 | 63533333 | 63533162 | ID=Msa0513260-mRNA-1:five_prime_utr;Parent=Msa0513260-mRNA-1 |
| chr3_4 | five_prime_UTR | 63532204 | 63532212 | 63532204 | ID=Msa0513260-mRNA-1:five_prime_utr;Parent=Msa0513260-mRNA-1 |
| chr3_4 | CDS | 63532144 | 63532203 | 63532144 | ID=Msa0513260-mRNA-1:cds;Parent=Msa0513260-mRNA-1 |
| chr3_4 | CDS | 63531896 | 63532042 | 63531896 | ID=Msa0513260-mRNA-1:cds;Parent=Msa0513260-mRNA-1 |
| chr3_4 | CDS | 63531722 | 63531795 | 63531722 | ID=Msa0513260-mRNA-1:cds;Parent=Msa0513260-mRNA-1 |
| chr3_4 | CDS | 63531478 | 63531610 | 63531478 | ID=Msa0513260-mRNA-1:cds;Parent=Msa0513260-mRNA-1 |
| chr3_4 | three_prime_UTR | 63531201 | 63531477 | 63531201 | ID=Msa0513260-mRNA-1:three_prime_utr;Parent=Msa0513260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
