AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693570 MtrunA17_Chr4g0043941 96.657 329 11 0 13 341 4 332 0.0 655
Msa0693570 MtrunA17_Chr6g0448821 27.184 309 189 4 57 331 54 360 1.87e-35 132
Msa0693570 MtrunA17_Chr5g0428941 24.333 300 223 4 30 328 187 483 1.20e-31 124
Msa0693570 MtrunA17_Chr5g0428941 22.727 220 161 3 52 271 141 351 1.39e-13 71.6
Msa0693570 MtrunA17_Chr4g0034981 25.850 294 213 5 37 328 296 586 4.34e-31 123
Msa0693570 MtrunA17_Chr2g0294671 26.374 273 195 4 56 328 217 483 8.59e-27 110
Msa0693570 MtrunA17_Chr2g0294671 29.605 152 105 2 118 269 207 356 2.87e-14 73.6
Msa0693570 MtrunA17_Chr2g0294671 23.451 226 162 3 10 232 278 495 1.00e-12 68.9
Msa0693570 MtrunA17_Chr1g0212691 22.115 312 199 5 56 328 145 451 7.03e-25 105
Msa0693570 MtrunA17_Chr1g0212691 24.675 231 148 3 54 259 82 311 1.46e-16 80.5
Msa0693570 MtrunA17_Chr5g0445491 27.820 266 178 6 51 307 188 448 2.13e-23 100
Msa0693570 MtrunA17_Chr5g0445491 27.948 229 161 3 50 277 226 451 4.33e-19 88.2
Msa0693570 MtrunA17_Chr2g0304101 23.600 250 181 4 78 327 65 304 9.12e-18 82.8
Msa0693570 MtrunA17_Chr5g0417641 26.754 228 152 3 106 327 74 292 1.07e-16 79.7
Msa0693570 MtrunA17_Chr7g0250261 29.032 217 134 5 125 331 77 283 1.15e-16 79.0
Msa0693570 MtrunA17_Chr0c29g0494001 29.032 217 134 5 125 331 77 283 1.15e-16 79.0
Msa0693570 MtrunA17_Chr2g0311181 27.528 178 120 2 154 328 129 300 2.69e-16 78.6
Msa0693570 MtrunA17_Chr2g0296191 22.892 332 235 9 9 333 177 494 1.22e-12 68.9
Msa0693570 MtrunA17_Chr8g0339041 21.269 268 199 5 26 293 63 318 6.95e-12 65.9
Msa0693570 MtrunA17_Chr8g0391881 20.243 247 193 4 55 300 127 370 8.35e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693570 AT4G38160.4 66.154 325 108 2 13 335 4 328 2.48e-161 454
Msa0693570 AT4G38160.1 66.154 325 108 2 13 335 4 328 2.48e-161 454
Msa0693570 AT4G38160.2 66.358 324 107 2 14 335 5 328 1.10e-160 454
Msa0693570 AT4G38160.3 66.154 325 108 2 13 335 4 328 3.43e-160 453
Msa0693570 AT2G21710.1 25.776 322 199 8 46 330 277 595 7.09e-33 129
Msa0693570 AT1G78930.1 29.368 269 184 4 73 338 323 588 2.55e-31 124
Msa0693570 AT4G02990.2 21.935 310 204 3 55 328 184 491 3.90e-28 115
Msa0693570 AT4G02990.2 21.147 279 189 4 23 274 92 366 7.41e-16 79.0
Msa0693570 AT4G02990.1 21.935 310 204 3 55 328 184 491 3.90e-28 115
Msa0693570 AT4G02990.1 21.147 279 189 4 23 274 92 366 7.41e-16 79.0
Msa0693570 AT4G14605.2 27.757 263 184 4 66 328 212 468 1.35e-27 113
Msa0693570 AT4G14605.2 23.786 206 149 2 13 218 266 463 9.31e-14 72.4
Msa0693570 AT4G14605.1 27.757 263 184 4 66 328 212 468 1.35e-27 113
Msa0693570 AT4G14605.1 23.786 206 149 2 13 218 266 463 9.31e-14 72.4
Msa0693570 AT2G44020.1 24.679 312 191 5 56 328 150 456 5.49e-27 111
Msa0693570 AT2G44020.1 24.038 208 153 2 52 259 114 316 4.89e-16 79.3
Msa0693570 AT2G21710.2 25.442 283 171 8 46 291 277 556 5.94e-24 103
Msa0693570 AT2G21710.3 25.623 281 169 8 46 289 277 554 9.87e-24 102
Msa0693570 AT2G03050.1 27.004 237 166 4 93 328 39 269 3.57e-23 97.8
Msa0693570 AT2G03050.2 27.004 237 166 4 93 328 40 270 3.75e-23 97.8
Msa0693570 AT5G55580.2 25.475 263 176 6 55 307 83 335 1.06e-21 95.5
Msa0693570 AT5G55580.2 25.217 230 166 4 50 277 113 338 1.18e-18 86.7
Msa0693570 AT5G55580.1 25.475 263 176 6 55 307 189 441 3.27e-21 94.7
Msa0693570 AT5G55580.1 25.217 230 166 4 50 277 219 444 3.88e-18 85.5
Msa0693570 AT2G36000.2 26.562 192 134 2 137 327 122 307 2.38e-19 87.8
Msa0693570 AT2G36000.1 26.562 192 134 2 137 327 122 307 2.87e-19 87.8
Msa0693570 AT2G34620.1 23.529 204 154 1 125 328 90 291 6.95e-19 86.3
Msa0693570 AT2G34620.1 29.333 150 102 3 56 204 93 239 3.36e-12 66.6
Msa0693570 AT3G18870.1 29.851 201 135 5 133 331 76 272 4.09e-18 83.6
Msa0693570 AT5G54180.1 27.481 262 179 9 70 327 234 488 8.22e-18 84.7
Msa0693570 AT5G55580.3 24.859 177 130 3 50 224 219 394 3.63e-14 73.2
Msa0693570 AT5G55580.3 25.116 215 141 6 55 259 189 393 8.07e-13 69.3
Msa0693570 AT5G64950.1 29.448 163 108 5 99 259 52 209 4.56e-11 63.9
Msa0693570 AT1G21150.2 19.392 263 199 5 11 270 148 400 6.25e-11 63.5
Msa0693570 AT1G21150.1 19.392 263 199 5 11 270 84 336 6.55e-11 63.5
Msa0693570 AT1G21150.3 19.392 263 199 5 11 270 48 300 7.70e-11 63.2

Find 65 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGACCAAGTACAAGAATTT+TGG 0.151290 4_4:+62527453 None:intergenic
GATTAAGGACCCGTATATTA+TGG 0.175262 4_4:-62527137 Msa0693570:CDS
GCGAACGAGCAAATGAAAAT+TGG 0.246447 4_4:-62527537 Msa0693570:CDS
GATTAATTTGTAGAGTAAAA+TGG 0.249320 4_4:-62527677 Msa0693570:intron
AGAGAAGCTTTGTCCTCTTT+TGG 0.259572 4_4:-62527320 Msa0693570:CDS
CAAGAGTGTTCGGAATTCTT+TGG 0.260167 4_4:-62526897 Msa0693570:CDS
ATAAGTTATCCTTTGGATCT+AGG 0.275546 4_4:-62526472 Msa0693570:three_prime_UTR
ACACTATAACCCATAATATA+CGG 0.287612 4_4:+62527127 None:intergenic
CGAACACTCTTGATCAAAAT+AGG 0.322211 4_4:+62526908 None:intergenic
TTTGACTGAGCAGGATCTTC+AGG 0.331599 4_4:-62527059 Msa0693570:CDS
TTAAAGAACTGTGGATTTCA+TGG 0.334993 4_4:-62526965 Msa0693570:CDS
AAGAAGTTCCACTTGAAGTT+TGG 0.341154 4_4:-62526704 Msa0693570:CDS
TTGAAGTTTGGCTTGTTAGA+AGG 0.350213 4_4:-62526692 Msa0693570:CDS
TGGGAGTATTTGAAAACAAT+TGG 0.351216 4_4:-62527517 Msa0693570:CDS
TAGAGATGTGGATAAGGTTT+TGG 0.354515 4_4:-62527005 Msa0693570:CDS
TGGGTTATAGTGTTGATAAA+AGG 0.361012 4_4:-62527117 Msa0693570:CDS
TACGATGATAAGTTATCCTT+TGG 0.367913 4_4:-62526479 Msa0693570:three_prime_UTR
TGGCCGGCAGATAGTTGATT+TGG 0.380260 4_4:-62526945 Msa0693570:CDS
TGCCCCAAAATTCTTGTACT+TGG 0.381501 4_4:-62527457 Msa0693570:CDS
ATTAAGGACCCGTATATTAT+GGG 0.382034 4_4:-62527136 Msa0693570:CDS
CTTGATAAAGACGGAATGAT+TGG 0.389340 4_4:-62527169 Msa0693570:CDS
GCTGCTGTTATTGCCGCTAC+TGG 0.445431 4_4:+62527651 None:intergenic
CGAACGAGCAAATGAAAATT+GGG 0.448262 4_4:-62527536 Msa0693570:CDS
TTTGAGTAGAGATGTGGATA+AGG 0.454342 4_4:-62527011 Msa0693570:CDS
AAATTCTATTGTTAAACCCT+AGG 0.457090 4_4:-62527255 Msa0693570:CDS
CAGATAGTTGATTTGGTGGT+TGG 0.459004 4_4:-62526938 Msa0693570:CDS
GTGAAATTTCTTGCTAGTGT+TGG 0.461499 4_4:-62527193 Msa0693570:CDS
ATGCTATAACTAATAAGCCT+AGG 0.489054 4_4:+62527238 None:intergenic
CAATGAAAAGATTGTTCCAA+TGG 0.489343 4_4:-62527431 Msa0693570:CDS
TTGCAGCTTGAGTGAAATGC+TGG 0.494640 4_4:-62526738 Msa0693570:CDS
TATCCATGCTTCTTTCGTCA+TGG 0.501505 4_4:-62526815 Msa0693570:CDS
GTCGATAGGTTTGACTGAGC+AGG 0.509092 4_4:-62527068 Msa0693570:CDS
CCGGCAGATAGTTGATTTGG+TGG 0.512541 4_4:-62526942 Msa0693570:CDS
ACACTACAAGAGAGTATTTG+AGG 0.513102 4_4:+62527346 None:intergenic
AGAACTGTGGATTTCATGGC+CGG 0.517285 4_4:-62526961 Msa0693570:CDS
TGAGGCGTGTTTGCATGGCA+TGG 0.521794 4_4:-62526447 Msa0693570:three_prime_UTR
ATGATGGCAGAGGAACCCTT+TGG 0.528089 4_4:+62526421 None:intergenic
CACTATAACCCATAATATAC+GGG 0.530664 4_4:+62527128 None:intergenic
ATCCTTTGGATCTAGGATTG+AGG 0.531154 4_4:-62526465 Msa0693570:three_prime_UTR
AGGATTGAGGCGTGTTTGCA+TGG 0.534779 4_4:-62526452 Msa0693570:three_prime_UTR
CACTACAAGAGAGTATTTGA+GGG 0.546905 4_4:+62527347 None:intergenic
TGCTATAACTAATAAGCCTA+GGG 0.547400 4_4:+62527239 None:intergenic
TGCATGGCATGGGTACCAAA+GGG 0.550606 4_4:-62526436 Msa0693570:three_prime_UTR
TTGCATGGCATGGGTACCAA+AGG 0.553662 4_4:-62526437 Msa0693570:three_prime_UTR
TAAAAGGCTTCGTCCTACTT+CGG 0.555828 4_4:-62527101 Msa0693570:CDS
CTAACAAGCCAAACTTCAAG+TGG 0.558319 4_4:+62526696 None:intergenic
GTGTTGAGACATTCAACCAT+TGG 0.559854 4_4:+62527415 None:intergenic
GAGGCGTGTTTGCATGGCAT+GGG 0.564299 4_4:-62526446 Msa0693570:three_prime_UTR
CGCCTCAATCCTAGATCCAA+AGG 0.566885 4_4:+62526463 None:intergenic
TTCGGAATTCTTTGGAACCG+AGG 0.584467 4_4:-62526889 Msa0693570:CDS
ATACGGAAGGTGCTCAACAT+CGG 0.595526 4_4:+62526571 None:intergenic
TCAAATACTCTCTTGTAGTG+TGG 0.603146 4_4:-62527344 Msa0693570:CDS
ATAGCAGATGCAACTTCATG+AGG 0.606629 4_4:+62527379 None:intergenic
AGGACATACTTTGAGTAACT+AGG 0.611172 4_4:-62526672 Msa0693570:exon
CGGAAGGTGCTCAACATCGG+CGG 0.611725 4_4:+62526574 None:intergenic
CTAGTGTCTTATGATGGCAG+AGG 0.620381 4_4:+62526411 None:intergenic
AGGCCATGACGAAAGAAGCA+TGG 0.620961 4_4:+62526812 None:intergenic
ACACTCTTGATCAAAATAGG+AGG 0.622517 4_4:+62526911 None:intergenic
CCACCAAATCAACTATCTGC+CGG 0.624823 4_4:+62526942 None:intergenic
TAGCATTGAGACGAAGATGA+CGG 0.632455 4_4:-62527221 Msa0693570:CDS
GGCACAAGCTCTTAAAGCAG+AGG 0.635201 4_4:-62526769 Msa0693570:CDS
AGTGTTGGTCTTGATAAAGA+CGG 0.642183 4_4:-62527178 Msa0693570:CDS
AGTAAAATGGAAACCAGTAG+CGG 0.644038 4_4:-62527664 Msa0693570:CDS
ACATCTCTACTCAAAATCGA+CGG 0.644998 4_4:+62527019 None:intergenic
ATAACAGCAGCAACATGATG+TGG 0.646285 4_4:-62527639 Msa0693570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATCACAACAATTTTAATA+CGG + chr4_4:62527825-62527844 None:intergenic 15.0%
!!! AAATCACAACAATTTTAATA+CGG + chr4_4:62527825-62527844 None:intergenic 15.0%
!! TTTACTCTACAAATTAATCA+TGG + chr4_4:62526698-62526717 None:intergenic 20.0%
!!! GATTAATTTGTAGAGTAAAA+TGG - chr4_4:62526699-62526718 Msa0693570:CDS 20.0%
!!! AATTTTCCCAATTTGTTTTT+CGG + chr4_4:62527106-62527125 None:intergenic 20.0%
!! GATTGGAAAAATTATGATTA+AGG - chr4_4:62527224-62527243 Msa0693570:CDS 20.0%
!!! TATGATTTTTTAAAGAACTG+TGG - chr4_4:62527402-62527421 Msa0693570:CDS 20.0%
!! TTTACTCTACAAATTAATCA+TGG + chr4_4:62526698-62526717 None:intergenic 20.0%
!!! GATTAATTTGTAGAGTAAAA+TGG - chr4_4:62526699-62526718 Msa0693570:CDS 20.0%
!!! AATTTTCCCAATTTGTTTTT+CGG + chr4_4:62527106-62527125 None:intergenic 20.0%
!! GATTGGAAAAATTATGATTA+AGG - chr4_4:62527224-62527243 Msa0693570:CDS 20.0%
!!! TATGATTTTTTAAAGAACTG+TGG - chr4_4:62527402-62527421 Msa0693570:CDS 20.0%
! CAGAATATACATGAAGAAAT+TGG + chr4_4:62526592-62526611 None:intergenic 25.0%
!!! TGTGAACATTTTTTGTATGA+TGG + chr4_4:62526791-62526810 None:intergenic 25.0%
!!! TTGGCATTTTTTCAAACATT+AGG - chr4_4:62527075-62527094 Msa0693570:CDS 25.0%
!!! ATTTTCCCAATTTGTTTTTC+GGG + chr4_4:62527105-62527124 None:intergenic 25.0%
! AAATTCTATTGTTAAACCCT+AGG - chr4_4:62527121-62527140 Msa0693570:CDS 25.0%
! ACACTATAACCCATAATATA+CGG + chr4_4:62527252-62527271 None:intergenic 25.0%
!!! AAGTTTTTGGTAGATGTAAT+GGG - chr4_4:62527513-62527532 Msa0693570:CDS 25.0%
! CAGAATATACATGAAGAAAT+TGG + chr4_4:62526592-62526611 None:intergenic 25.0%
!!! TGTGAACATTTTTTGTATGA+TGG + chr4_4:62526791-62526810 None:intergenic 25.0%
!!! TTGGCATTTTTTCAAACATT+AGG - chr4_4:62527075-62527094 Msa0693570:CDS 25.0%
!!! ATTTTCCCAATTTGTTTTTC+GGG + chr4_4:62527105-62527124 None:intergenic 25.0%
! AAATTCTATTGTTAAACCCT+AGG - chr4_4:62527121-62527140 Msa0693570:CDS 25.0%
! ACACTATAACCCATAATATA+CGG + chr4_4:62527252-62527271 None:intergenic 25.0%
!!! AAGTTTTTGGTAGATGTAAT+GGG - chr4_4:62527513-62527532 Msa0693570:CDS 25.0%
!! TGGGAGTATTTGAAAACAAT+TGG - chr4_4:62526859-62526878 Msa0693570:CDS 30.0%
! AGACCAAGTACAAGAATTTT+GGG + chr4_4:62526925-62526944 None:intergenic 30.0%
CAATGAAAAGATTGTTCCAA+TGG - chr4_4:62526945-62526964 Msa0693570:CDS 30.0%
GTTTGAAAAAATGCCAAAAG+AGG + chr4_4:62527072-62527091 None:intergenic 30.0%
TGCTATAACTAATAAGCCTA+GGG + chr4_4:62527140-62527159 None:intergenic 30.0%
ATGCTATAACTAATAAGCCT+AGG + chr4_4:62527141-62527160 None:intergenic 30.0%
ATTAAGGACCCGTATATTAT+GGG - chr4_4:62527240-62527259 Msa0693570:CDS 30.0%
CACTATAACCCATAATATAC+GGG + chr4_4:62527251-62527270 None:intergenic 30.0%
!! TGGGTTATAGTGTTGATAAA+AGG - chr4_4:62527259-62527278 Msa0693570:CDS 30.0%
TTAAAGAACTGTGGATTTCA+TGG - chr4_4:62527411-62527430 Msa0693570:CDS 30.0%
!!! CTATTTTGATCAAGAGTGTT+CGG - chr4_4:62527469-62527488 Msa0693570:CDS 30.0%
!!! CAAGTTTTTGGTAGATGTAA+TGG - chr4_4:62527512-62527531 Msa0693570:CDS 30.0%
TGAAGAAAAAATTAGTGTCG+CGG - chr4_4:62527586-62527605 Msa0693570:CDS 30.0%
!! CACAACAATTTTAATACGGA+AGG + chr4_4:62527821-62527840 None:intergenic 30.0%
TACGATGATAAGTTATCCTT+TGG - chr4_4:62527897-62527916 Msa0693570:intron 30.0%
ATAAGTTATCCTTTGGATCT+AGG - chr4_4:62527904-62527923 Msa0693570:intron 30.0%
!! TGGGAGTATTTGAAAACAAT+TGG - chr4_4:62526859-62526878 Msa0693570:CDS 30.0%
! AGACCAAGTACAAGAATTTT+GGG + chr4_4:62526925-62526944 None:intergenic 30.0%
CAATGAAAAGATTGTTCCAA+TGG - chr4_4:62526945-62526964 Msa0693570:CDS 30.0%
GTTTGAAAAAATGCCAAAAG+AGG + chr4_4:62527072-62527091 None:intergenic 30.0%
TGCTATAACTAATAAGCCTA+GGG + chr4_4:62527140-62527159 None:intergenic 30.0%
ATGCTATAACTAATAAGCCT+AGG + chr4_4:62527141-62527160 None:intergenic 30.0%
ATTAAGGACCCGTATATTAT+GGG - chr4_4:62527240-62527259 Msa0693570:CDS 30.0%
CACTATAACCCATAATATAC+GGG + chr4_4:62527251-62527270 None:intergenic 30.0%
!! TGGGTTATAGTGTTGATAAA+AGG - chr4_4:62527259-62527278 Msa0693570:CDS 30.0%
TTAAAGAACTGTGGATTTCA+TGG - chr4_4:62527411-62527430 Msa0693570:CDS 30.0%
!!! CTATTTTGATCAAGAGTGTT+CGG - chr4_4:62527469-62527488 Msa0693570:CDS 30.0%
!!! CAAGTTTTTGGTAGATGTAA+TGG - chr4_4:62527512-62527531 Msa0693570:CDS 30.0%
TGAAGAAAAAATTAGTGTCG+CGG - chr4_4:62527586-62527605 Msa0693570:CDS 30.0%
!! CACAACAATTTTAATACGGA+AGG + chr4_4:62527821-62527840 None:intergenic 30.0%
TACGATGATAAGTTATCCTT+TGG - chr4_4:62527897-62527916 Msa0693570:intron 30.0%
ATAAGTTATCCTTTGGATCT+AGG - chr4_4:62527904-62527923 Msa0693570:intron 30.0%
ACATGAAGAAATTGGCGTAA+GGG + chr4_4:62526584-62526603 None:intergenic 35.0%
TACATGAAGAAATTGGCGTA+AGG + chr4_4:62526585-62526604 None:intergenic 35.0%
AGTAAAATGGAAACCAGTAG+CGG - chr4_4:62526712-62526731 Msa0693570:CDS 35.0%
! CAACATGATGTGGTTTTTCA+AGG - chr4_4:62526747-62526766 Msa0693570:CDS 35.0%
CGAACGAGCAAATGAAAATT+GGG - chr4_4:62526840-62526859 Msa0693570:CDS 35.0%
!!! GGGCATTTTGAAACAATTGA+AGG + chr4_4:62526904-62526923 None:intergenic 35.0%
! GACCAAGTACAAGAATTTTG+GGG + chr4_4:62526924-62526943 None:intergenic 35.0%
! GAGACCAAGTACAAGAATTT+TGG + chr4_4:62526926-62526945 None:intergenic 35.0%
!! CACTACAAGAGAGTATTTGA+GGG + chr4_4:62527032-62527051 None:intergenic 35.0%
!! ACACTACAAGAGAGTATTTG+AGG + chr4_4:62527033-62527052 None:intergenic 35.0%
TCAAATACTCTCTTGTAGTG+TGG - chr4_4:62527032-62527051 Msa0693570:CDS 35.0%
GTGAAATTTCTTGCTAGTGT+TGG - chr4_4:62527183-62527202 Msa0693570:CDS 35.0%
!! AGTGTTGGTCTTGATAAAGA+CGG - chr4_4:62527198-62527217 Msa0693570:CDS 35.0%
CTTGATAAAGACGGAATGAT+TGG - chr4_4:62527207-62527226 Msa0693570:CDS 35.0%
GATTAAGGACCCGTATATTA+TGG - chr4_4:62527239-62527258 Msa0693570:CDS 35.0%
ACATCTCTACTCAAAATCGA+CGG + chr4_4:62527360-62527379 None:intergenic 35.0%
TTTGAGTAGAGATGTGGATA+AGG - chr4_4:62527365-62527384 Msa0693570:CDS 35.0%
! TAGAGATGTGGATAAGGTTT+TGG - chr4_4:62527371-62527390 Msa0693570:CDS 35.0%
ACACTCTTGATCAAAATAGG+AGG + chr4_4:62527468-62527487 None:intergenic 35.0%
CGAACACTCTTGATCAAAAT+AGG + chr4_4:62527471-62527490 None:intergenic 35.0%
TCTACCAAAAACTTGATCCT+CGG + chr4_4:62527507-62527526 None:intergenic 35.0%
!!! GCGACACTAATTTTTTCTTC+AGG + chr4_4:62527587-62527606 None:intergenic 35.0%
AAGAAGTTCCACTTGAAGTT+TGG - chr4_4:62527672-62527691 Msa0693570:intron 35.0%
!! TTGAAGTTTGGCTTGTTAGA+AGG - chr4_4:62527684-62527703 Msa0693570:intron 35.0%
AGGACATACTTTGAGTAACT+AGG - chr4_4:62527704-62527723 Msa0693570:intron 35.0%
ACATGAAGAAATTGGCGTAA+GGG + chr4_4:62526584-62526603 None:intergenic 35.0%
TACATGAAGAAATTGGCGTA+AGG + chr4_4:62526585-62526604 None:intergenic 35.0%
AGTAAAATGGAAACCAGTAG+CGG - chr4_4:62526712-62526731 Msa0693570:CDS 35.0%
! CAACATGATGTGGTTTTTCA+AGG - chr4_4:62526747-62526766 Msa0693570:CDS 35.0%
CGAACGAGCAAATGAAAATT+GGG - chr4_4:62526840-62526859 Msa0693570:CDS 35.0%
!!! GGGCATTTTGAAACAATTGA+AGG + chr4_4:62526904-62526923 None:intergenic 35.0%
! GACCAAGTACAAGAATTTTG+GGG + chr4_4:62526924-62526943 None:intergenic 35.0%
! GAGACCAAGTACAAGAATTT+TGG + chr4_4:62526926-62526945 None:intergenic 35.0%
!! CACTACAAGAGAGTATTTGA+GGG + chr4_4:62527032-62527051 None:intergenic 35.0%
!! ACACTACAAGAGAGTATTTG+AGG + chr4_4:62527033-62527052 None:intergenic 35.0%
TCAAATACTCTCTTGTAGTG+TGG - chr4_4:62527032-62527051 Msa0693570:CDS 35.0%
GTGAAATTTCTTGCTAGTGT+TGG - chr4_4:62527183-62527202 Msa0693570:CDS 35.0%
!! AGTGTTGGTCTTGATAAAGA+CGG - chr4_4:62527198-62527217 Msa0693570:CDS 35.0%
CTTGATAAAGACGGAATGAT+TGG - chr4_4:62527207-62527226 Msa0693570:CDS 35.0%
GATTAAGGACCCGTATATTA+TGG - chr4_4:62527239-62527258 Msa0693570:CDS 35.0%
ACATCTCTACTCAAAATCGA+CGG + chr4_4:62527360-62527379 None:intergenic 35.0%
TTTGAGTAGAGATGTGGATA+AGG - chr4_4:62527365-62527384 Msa0693570:CDS 35.0%
! TAGAGATGTGGATAAGGTTT+TGG - chr4_4:62527371-62527390 Msa0693570:CDS 35.0%
ACACTCTTGATCAAAATAGG+AGG + chr4_4:62527468-62527487 None:intergenic 35.0%
CGAACACTCTTGATCAAAAT+AGG + chr4_4:62527471-62527490 None:intergenic 35.0%
TCTACCAAAAACTTGATCCT+CGG + chr4_4:62527507-62527526 None:intergenic 35.0%
!!! GCGACACTAATTTTTTCTTC+AGG + chr4_4:62527587-62527606 None:intergenic 35.0%
AAGAAGTTCCACTTGAAGTT+TGG - chr4_4:62527672-62527691 Msa0693570:intron 35.0%
!! TTGAAGTTTGGCTTGTTAGA+AGG - chr4_4:62527684-62527703 Msa0693570:intron 35.0%
AGGACATACTTTGAGTAACT+AGG - chr4_4:62527704-62527723 Msa0693570:intron 35.0%
TGAAGAAGAAGAAGACAGCA+TGG + chr4_4:62526468-62526487 None:intergenic 40.0%
AAGCAGATAAGGCAGTGAAA+TGG + chr4_4:62526528-62526547 None:intergenic 40.0%
ATAACAGCAGCAACATGATG+TGG - chr4_4:62526737-62526756 Msa0693570:CDS 40.0%
!!! ATGTGGTTTTTCAAGGACAG+AGG - chr4_4:62526754-62526773 Msa0693570:CDS 40.0%
GCGAACGAGCAAATGAAAAT+TGG - chr4_4:62526839-62526858 Msa0693570:CDS 40.0%
TGCCCCAAAATTCTTGTACT+TGG - chr4_4:62526919-62526938 Msa0693570:CDS 40.0%
GTGTTGAGACATTCAACCAT+TGG + chr4_4:62526964-62526983 None:intergenic 40.0%
ATAGCAGATGCAACTTCATG+AGG + chr4_4:62527000-62527019 None:intergenic 40.0%
!! AGAGAAGCTTTGTCCTCTTT+TGG - chr4_4:62527056-62527075 Msa0693570:CDS 40.0%
! TAGCATTGAGACGAAGATGA+CGG - chr4_4:62527155-62527174 Msa0693570:CDS 40.0%
TAAAAGGCTTCGTCCTACTT+CGG - chr4_4:62527275-62527294 Msa0693570:CDS 40.0%
GACTTCAAAAACTCCGAAGT+AGG + chr4_4:62527291-62527310 None:intergenic 40.0%
!!! TCGGAGTTTTTGAAGTCGAT+AGG - chr4_4:62527294-62527313 Msa0693570:CDS 40.0%
!! GTCGATTTTGAGTAGAGATG+TGG - chr4_4:62527359-62527378 Msa0693570:CDS 40.0%
!! CAGATAGTTGATTTGGTGGT+TGG - chr4_4:62527438-62527457 Msa0693570:CDS 40.0%
!! CAAGAGTGTTCGGAATTCTT+TGG - chr4_4:62527479-62527498 Msa0693570:CDS 40.0%
TATCCATGCTTCTTTCGTCA+TGG - chr4_4:62527561-62527580 Msa0693570:CDS 40.0%
CTAACAAGCCAAACTTCAAG+TGG + chr4_4:62527683-62527702 None:intergenic 40.0%
! ATCCTTTGGATCTAGGATTG+AGG - chr4_4:62527911-62527930 Msa0693570:intron 40.0%
TATAGATTCTTACCGACCCA+TGG + chr4_4:62526427-62526446 None:intergenic 40.0%
TGAAGAAGAAGAAGACAGCA+TGG + chr4_4:62526468-62526487 None:intergenic 40.0%
AAGCAGATAAGGCAGTGAAA+TGG + chr4_4:62526528-62526547 None:intergenic 40.0%
ATAACAGCAGCAACATGATG+TGG - chr4_4:62526737-62526756 Msa0693570:CDS 40.0%
!!! ATGTGGTTTTTCAAGGACAG+AGG - chr4_4:62526754-62526773 Msa0693570:CDS 40.0%
GCGAACGAGCAAATGAAAAT+TGG - chr4_4:62526839-62526858 Msa0693570:CDS 40.0%
TGCCCCAAAATTCTTGTACT+TGG - chr4_4:62526919-62526938 Msa0693570:CDS 40.0%
GTGTTGAGACATTCAACCAT+TGG + chr4_4:62526964-62526983 None:intergenic 40.0%
ATAGCAGATGCAACTTCATG+AGG + chr4_4:62527000-62527019 None:intergenic 40.0%
!! AGAGAAGCTTTGTCCTCTTT+TGG - chr4_4:62527056-62527075 Msa0693570:CDS 40.0%
! TAGCATTGAGACGAAGATGA+CGG - chr4_4:62527155-62527174 Msa0693570:CDS 40.0%
TAAAAGGCTTCGTCCTACTT+CGG - chr4_4:62527275-62527294 Msa0693570:CDS 40.0%
GACTTCAAAAACTCCGAAGT+AGG + chr4_4:62527291-62527310 None:intergenic 40.0%
!!! TCGGAGTTTTTGAAGTCGAT+AGG - chr4_4:62527294-62527313 Msa0693570:CDS 40.0%
!! GTCGATTTTGAGTAGAGATG+TGG - chr4_4:62527359-62527378 Msa0693570:CDS 40.0%
!! CAGATAGTTGATTTGGTGGT+TGG - chr4_4:62527438-62527457 Msa0693570:CDS 40.0%
!! CAAGAGTGTTCGGAATTCTT+TGG - chr4_4:62527479-62527498 Msa0693570:CDS 40.0%
TATCCATGCTTCTTTCGTCA+TGG - chr4_4:62527561-62527580 Msa0693570:CDS 40.0%
CTAACAAGCCAAACTTCAAG+TGG + chr4_4:62527683-62527702 None:intergenic 40.0%
! ATCCTTTGGATCTAGGATTG+AGG - chr4_4:62527911-62527930 Msa0693570:intron 40.0%
GAAGAAGAAGACAGCATGGA+TGG + chr4_4:62526464-62526483 None:intergenic 45.0%
AGTGAAATGGCGAAGGAAAG+AGG + chr4_4:62526515-62526534 None:intergenic 45.0%
ATAAGGCAGTGAAATGGCGA+AGG + chr4_4:62526522-62526541 None:intergenic 45.0%
!! GAAATTGGCGTAAGGGTGTT+AGG + chr4_4:62526577-62526596 None:intergenic 45.0%
GCGTGCCCGAAAAACAAATT+GGG - chr4_4:62527097-62527116 Msa0693570:CDS 45.0%
TTTGACTGAGCAGGATCTTC+AGG - chr4_4:62527317-62527336 Msa0693570:CDS 45.0%
AGAACTGTGGATTTCATGGC+CGG - chr4_4:62527415-62527434 Msa0693570:CDS 45.0%
CCACCAAATCAACTATCTGC+CGG + chr4_4:62527437-62527456 None:intergenic 45.0%
!! TTCGGAATTCTTTGGAACCG+AGG - chr4_4:62527487-62527506 Msa0693570:CDS 45.0%
! GGAACCGAGGATCAAGTTTT+TGG - chr4_4:62527500-62527519 Msa0693570:CDS 45.0%
TTGCAGCTTGAGTGAAATGC+TGG - chr4_4:62527638-62527657 Msa0693570:CDS 45.0%
!! ATACGGAAGGTGCTCAACAT+CGG + chr4_4:62527808-62527827 None:intergenic 45.0%
GAAGAAGAAGACAGCATGGA+TGG + chr4_4:62526464-62526483 None:intergenic 45.0%
AGTGAAATGGCGAAGGAAAG+AGG + chr4_4:62526515-62526534 None:intergenic 45.0%
ATAAGGCAGTGAAATGGCGA+AGG + chr4_4:62526522-62526541 None:intergenic 45.0%
!! GAAATTGGCGTAAGGGTGTT+AGG + chr4_4:62526577-62526596 None:intergenic 45.0%
GCGTGCCCGAAAAACAAATT+GGG - chr4_4:62527097-62527116 Msa0693570:CDS 45.0%
TTTGACTGAGCAGGATCTTC+AGG - chr4_4:62527317-62527336 Msa0693570:CDS 45.0%
AGAACTGTGGATTTCATGGC+CGG - chr4_4:62527415-62527434 Msa0693570:CDS 45.0%
CCACCAAATCAACTATCTGC+CGG + chr4_4:62527437-62527456 None:intergenic 45.0%
!! TTCGGAATTCTTTGGAACCG+AGG - chr4_4:62527487-62527506 Msa0693570:CDS 45.0%
! GGAACCGAGGATCAAGTTTT+TGG - chr4_4:62527500-62527519 Msa0693570:CDS 45.0%
TTGCAGCTTGAGTGAAATGC+TGG - chr4_4:62527638-62527657 Msa0693570:CDS 45.0%
!! ATACGGAAGGTGCTCAACAT+CGG + chr4_4:62527808-62527827 None:intergenic 45.0%
AGACAGCATGGATGGACAAG+AGG + chr4_4:62526456-62526475 None:intergenic 50.0%
GGCGTGCCCGAAAAACAAAT+TGG - chr4_4:62527096-62527115 Msa0693570:CDS 50.0%
GTCGATAGGTTTGACTGAGC+AGG - chr4_4:62527308-62527327 Msa0693570:CDS 50.0%
TGGCCGGCAGATAGTTGATT+TGG - chr4_4:62527431-62527450 Msa0693570:CDS 50.0%
!! CCGGCAGATAGTTGATTTGG+TGG - chr4_4:62527434-62527453 Msa0693570:CDS 50.0%
AGGCCATGACGAAAGAAGCA+TGG + chr4_4:62527567-62527586 None:intergenic 50.0%
GGCACAAGCTCTTAAAGCAG+AGG - chr4_4:62527607-62527626 Msa0693570:CDS 50.0%
CGCCTCAATCCTAGATCCAA+AGG + chr4_4:62527916-62527935 None:intergenic 50.0%
AGGATTGAGGCGTGTTTGCA+TGG - chr4_4:62527924-62527943 Msa0693570:intron 50.0%
TTGCATGGCATGGGTACCAA+AGG - chr4_4:62527939-62527958 Msa0693570:intron 50.0%
TGCATGGCATGGGTACCAAA+GGG - chr4_4:62527940-62527959 Msa0693570:intron 50.0%
AGACAGCATGGATGGACAAG+AGG + chr4_4:62526456-62526475 None:intergenic 50.0%
GGCGTGCCCGAAAAACAAAT+TGG - chr4_4:62527096-62527115 Msa0693570:CDS 50.0%
GTCGATAGGTTTGACTGAGC+AGG - chr4_4:62527308-62527327 Msa0693570:CDS 50.0%
TGGCCGGCAGATAGTTGATT+TGG - chr4_4:62527431-62527450 Msa0693570:CDS 50.0%
!! CCGGCAGATAGTTGATTTGG+TGG - chr4_4:62527434-62527453 Msa0693570:CDS 50.0%
AGGCCATGACGAAAGAAGCA+TGG + chr4_4:62527567-62527586 None:intergenic 50.0%
GGCACAAGCTCTTAAAGCAG+AGG - chr4_4:62527607-62527626 Msa0693570:CDS 50.0%
CGCCTCAATCCTAGATCCAA+AGG + chr4_4:62527916-62527935 None:intergenic 50.0%
AGGATTGAGGCGTGTTTGCA+TGG - chr4_4:62527924-62527943 Msa0693570:intron 50.0%
TTGCATGGCATGGGTACCAA+AGG - chr4_4:62527939-62527958 Msa0693570:intron 50.0%
TGCATGGCATGGGTACCAAA+GGG - chr4_4:62527940-62527959 Msa0693570:intron 50.0%
CACTGCCTTATCTGCTTCCG+CGG - chr4_4:62526531-62526550 Msa0693570:three_prime_UTR 55.0%
GTTGTCCGCGGAAGCAGATA+AGG + chr4_4:62526539-62526558 None:intergenic 55.0%
GGTACCTGAAGAGTTGTCCG+CGG + chr4_4:62526551-62526570 None:intergenic 55.0%
!! TGGCGTAAGGGTGTTAGGAC+AGG + chr4_4:62526572-62526591 None:intergenic 55.0%
GCTGCTGTTATTGCCGCTAC+TGG + chr4_4:62526728-62526747 None:intergenic 55.0%
TGAGGCGTGTTTGCATGGCA+TGG - chr4_4:62527929-62527948 Msa0693570:intron 55.0%
GAGGCGTGTTTGCATGGCAT+GGG - chr4_4:62527930-62527949 Msa0693570:intron 55.0%
CACTGCCTTATCTGCTTCCG+CGG - chr4_4:62526531-62526550 Msa0693570:three_prime_UTR 55.0%
GTTGTCCGCGGAAGCAGATA+AGG + chr4_4:62526539-62526558 None:intergenic 55.0%
GGTACCTGAAGAGTTGTCCG+CGG + chr4_4:62526551-62526570 None:intergenic 55.0%
!! TGGCGTAAGGGTGTTAGGAC+AGG + chr4_4:62526572-62526591 None:intergenic 55.0%
GCTGCTGTTATTGCCGCTAC+TGG + chr4_4:62526728-62526747 None:intergenic 55.0%
TGAGGCGTGTTTGCATGGCA+TGG - chr4_4:62527929-62527948 Msa0693570:intron 55.0%
GAGGCGTGTTTGCATGGCAT+GGG - chr4_4:62527930-62527949 Msa0693570:intron 55.0%
GCTTCCGCGGACAACTCTTC+AGG - chr4_4:62526544-62526563 Msa0693570:three_prime_UTR 60.0%
!! CGGAAGGTGCTCAACATCGG+CGG + chr4_4:62527805-62527824 None:intergenic 60.0%
GCTTCCGCGGACAACTCTTC+AGG - chr4_4:62526544-62526563 Msa0693570:three_prime_UTR 60.0%
!! CGGAAGGTGCTCAACATCGG+CGG + chr4_4:62527805-62527824 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 62526426 62527972 62526426 ID=Msa0693570;Name=Msa0693570
chr4_4 mRNA 62526426 62527972 62526426 ID=Msa0693570-mRNA-1;Parent=Msa0693570;Name=Msa0693570-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0.33|0.66|0.5|0.33|3|247|341
chr4_4 exon 62526426 62527686 62526426 ID=Msa0693570-mRNA-1:exon:17568;Parent=Msa0693570-mRNA-1
chr4_4 exon 62527902 62527909 62527902 ID=Msa0693570-mRNA-1:exon:17567;Parent=Msa0693570-mRNA-1
chr4_4 exon 62527969 62527972 62527969 ID=Msa0693570-mRNA-1:exon:17566;Parent=Msa0693570-mRNA-1
chr4_4 CDS 62527969 62527972 62527969 ID=Msa0693570-mRNA-1:cds;Parent=Msa0693570-mRNA-1
chr4_4 CDS 62527902 62527909 62527902 ID=Msa0693570-mRNA-1:cds;Parent=Msa0693570-mRNA-1
chr4_4 CDS 62526673 62527686 62526673 ID=Msa0693570-mRNA-1:cds;Parent=Msa0693570-mRNA-1
chr4_4 three_prime_UTR 62526426 62526672 62526426 ID=Msa0693570-mRNA-1:three_prime_utr;Parent=Msa0693570-mRNA-1
Gene Sequence

>Msa0693570

ATGGTTGTGACTAGTAAAATGGAAACCAGTAGCGGCAATAACAGCAGCAACATGATGTGGTTTTTCAAGGACAGAGGCTTTGATGATACCATCATACAAAAAATGTTCACAAAATGCAAGCGTCTCGAGACAGCGCATCGCGAACGAGCAAATGAAAATTGGGAGTATTTGAAAACAATTGGTATTCAAGAAAGAAAACTTCCTTCAATTGTTTCAAAATGCCCCAAAATTCTTGTACTTGGTCTCAATGAAAAGATTGTTCCAATGGTTGAATGTCTCAACACACTTGCAACTAAGCCTCATGAAGTTGCATCTGCTATAGCTAAGTTCCCTCAAATACTCTCTTGTAGTGTGGAAGAGAAGCTTTGTCCTCTTTTGGCATTTTTTCAAACATTAGGCGTGCCCGAAAAACAAATTGGGAAAATTCTATTGTTAAACCCTAGGCTTATTAGTTATAGCATTGAGACGAAGATGACGGAAATTGTGAAATTTCTTGCTAGTGTTGGTCTTGATAAAGACGGAATGATTGGAAAAATTATGATTAAGGACCCGTATATTATGGGTTATAGTGTTGATAAAAGGCTTCGTCCTACTTCGGAGTTTTTGAAGTCGATAGGTTTGACTGAGCAGGATCTTCAGGTATTAGCGTTGAACTTTCCGTCGATTTTGAGTAGAGATGTGGATAAGGTTTTGGTACACAATTATGATTTTTTAAAGAACTGTGGATTTCATGGCCGGCAGATAGTTGATTTGGTGGTTGGTTATCCTCCTATTTTGATCAAGAGTGTTCGGAATTCTTTGGAACCGAGGATCAAGTTTTTGGTAGATGTAATGGGAAGAGAAGTTGATGAAATTATTGATTATCCATGCTTCTTTCGTCATGGCCTGAAGAAAAAATTAGTGTCGCGGCACAAGCTCTTAAAGCAGAGGAATTTAAATTGCAGCTTGAGTGAAATGCTGGACTGTAATGAGAAGAAGTTCCACTTGAAGTTTGGCTTGTTAGAAGGACATACTTTGAGTAACTAG

Protein sequence

>Msa0693570

MVVTSKMETSSGNNSSNMMWFFKDRGFDDTIIQKMFTKCKRLETAHRERANENWEYLKTIGIQERKLPSIVSKCPKILVLGLNEKIVPMVECLNTLATKPHEVASAIAKFPQILSCSVEEKLCPLLAFFQTLGVPEKQIGKILLLNPRLISYSIETKMTEIVKFLASVGLDKDGMIGKIMIKDPYIMGYSVDKRLRPTSEFLKSIGLTEQDLQVLALNFPSILSRDVDKVLVHNYDFLKNCGFHGRQIVDLVVGYPPILIKSVRNSLEPRIKFLVDVMGREVDEIIDYPCFFRHGLKKKLVSRHKLLKQRNLNCSLSEMLDCNEKKFHLKFGLLEGHTLSN*