AlfalfaGEDB | Msa0372120

M. sativa cultivar zhongmu-4 / Msa0372120

KEGG: -
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0016020 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372120	XP_003601478.2	67.016	191	17	3	79	224	635	824	1.94e-67	235
Msa0372120	XP_003601478.2	70.866	127	30	3	1	125	1	122	3.89e-38	153

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372120	sp\|Q6JN46\|EIX2_SOLLC	41.317	167	81	5	92	245	823	985	2.38e-21	96.7
Msa0372120	sp\|Q6JN46\|EIX2_SOLLC	36.774	155	86	6	15	162	16	165	5.47e-13	72.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372120	G7J832	67.016	191	17	3	79	224	635	824	9.26e-68	235
Msa0372120	G7J832	70.866	127	30	3	1	125	1	122	1.86e-38	153

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012780	Msa0372120	-0.809067	2.272892e-50	-8.615850e-47
Msa0014790	Msa0372120	0.814217	1.723782e-51	-8.615850e-47
Msa0030400	Msa0372120	0.807804	4.226710e-50	-8.615850e-47
Msa0054760	Msa0372120	0.829974	3.812564e-55	-8.615850e-47
Msa0062750	Msa0372120	0.808500	3.003548e-50	-8.615850e-47
Msa0072710	Msa0372120	0.813332	2.700967e-51	-8.615850e-47
Msa0072910	Msa0372120	0.802562	5.290356e-49	-8.615850e-47
Msa0094990	Msa0372120	0.801454	8.935287e-49	-8.615850e-47
Msa0101650	Msa0372120	0.806020	1.007339e-49	-8.615850e-47
Msa0106110	Msa0372120	-0.802137	6.469938e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372120	MtrunA17_Chr3g0120451	67.016	191	17	3	79	224	635	824	1.78e-71	235
Msa0372120	MtrunA17_Chr3g0120451	70.866	127	30	3	1	125	1	122	3.58e-42	153
Msa0372120	MtrunA17_Chr3g0097721	39.791	191	67	3	79	224	202	389	5.55e-36	133
Msa0372120	MtrunA17_Chr3g0097721	35.260	173	89	6	1	157	2	167	2.75e-16	78.2
Msa0372120	MtrunA17_Chr3g0097311	40.314	191	69	3	79	224	535	725	1.74e-35	134
Msa0372120	MtrunA17_Chr3g0097311	40.909	132	69	5	21	146	19	147	5.05e-14	71.6
Msa0372120	MtrunA17_Chr3g0097561	49.254	134	55	3	101	224	53	183	1.12e-34	124
Msa0372120	MtrunA17_Chr3g0097331	39.062	192	71	4	79	224	463	654	5.29e-34	130
Msa0372120	MtrunA17_Chr3g0097691	50.000	132	53	2	103	224	112	240	5.56e-34	124
Msa0372120	MtrunA17_Chr4g0003781	47.482	139	54	3	101	224	412	546	7.08e-34	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372120	AT2G01950.1	42.308	104	50	1	103	196	626	729	3.38e-18	84.7
Msa0372120	AT5G23400.1	37.671	146	75	4	65	194	439	584	1.39e-17	82.8
Msa0372120	AT3G05660.1	43.103	116	54	2	99	202	698	813	2.00e-17	82.4
Msa0372120	AT1G74190.1	32.558	172	99	5	95	255	786	951	2.96e-17	82.0
Msa0372120	AT1G31420.2	28.395	243	128	8	41	253	33	259	4.94e-17	80.9
Msa0372120	AT1G31420.1	28.395	243	128	8	41	253	33	259	5.86e-17	80.9
Msa0372120	AT1G31420.3	28.395	243	128	8	41	253	33	259	5.86e-17	80.9
Msa0372120	AT4G13920.1	44.444	99	45	1	103	191	728	826	2.70e-16	79.0
Msa0372120	AT2G34930.1	34.194	155	59	4	79	192	745	897	7.60e-16	77.8
Msa0372120	AT3G24982.1	46.465	99	43	1	103	191	748	846	1.17e-15	77.0

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Find 74 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATAGAAGAAAGTTTAA+TGG	0.365612	3_1:-70438904	Msa0372120:exon
AAACCACAAACACGTGATTA+AGG	0.358004	3_1:+70439230	None:intergenic
AAATGCATAAGTAACATCAC+TGG	0.596936	3_1:-70439859	Msa0372120:CDS
AACTAGATTGAAAACTTGTG+CGG	0.594695	3_1:+70439699	None:intergenic
AATAGTAGCAATACGCAGCT+TGG	0.562229	3_1:-70441710	Msa0372120:CDS
AATAGTAGTAGCCAAACAAT+GGG	0.525178	3_1:+70441764	None:intergenic
ACAGTCACTCTACTTTGGGT+TGG	0.444875	3_1:-70439335	Msa0372120:CDS
ACTAGATTGAAAACTTGTGC+GGG	0.529296	3_1:+70439700	None:intergenic
AGAGGAGCTCCACAAAGTCC+AGG	0.572409	3_1:+70439433	None:intergenic
AGTGATGTTACTTATGCATT+TGG	0.365907	3_1:+70439861	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGTAGTAGCCAAACAAT+GGG	+	chr3_1:70438759-70438778	None:intergenic	30.0%
TAATAGTAGTAGCCAAACAA+TGG	+	chr3_1:70438760-70438779	None:intergenic	30.0%
ATTCAAGCTTAAGTCTAAGT+AGG	+	chr3_1:70439066-70439085	None:intergenic	30.0%
TACTTAGACTTAAGCTTGAA+TGG	-	chr3_1:70439065-70439084	Msa0372120:intron	30.0%
CATCATTAAAGGATAAGTCT+AGG	+	chr3_1:70439166-70439185	None:intergenic	30.0%
CAAGTGAAGATCATCATTAA+AGG	+	chr3_1:70439177-70439196	None:intergenic	30.0%
CTTTAATGATGATCTTCACT+TGG	-	chr3_1:70439175-70439194	Msa0372120:intron	30.0%
TTCACTTGGATAATCTTCAT+TGG	-	chr3_1:70439189-70439208	Msa0372120:intron	30.0%
TGATGCATGTAACATATCTA+TGG	+	chr3_1:70439291-70439310	None:intergenic	30.0%
AGTAAAACTCACATGCTTAA+CGG	+	chr3_1:70439363-70439382	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	70438720	70441822	70438720	ID=Msa0372120;Name=Msa0372120
chr3_1	mRNA	70438720	70441822	70438720	ID=Msa0372120-mRNA-1;Parent=Msa0372120;Name=Msa0372120-mRNA-1;_AED=0.32;_eAED=0.32;_QI=12\|0.4\|0.33\|1\|0\|0\|6\|199\|269
chr3_1	exon	70438720	70438948	70438720	ID=Msa0372120-mRNA-1:exon:15343;Parent=Msa0372120-mRNA-1
chr3_1	exon	70439212	70439319	70439212	ID=Msa0372120-mRNA-1:exon:15342;Parent=Msa0372120-mRNA-1
chr3_1	exon	70439333	70439517	70439333	ID=Msa0372120-mRNA-1:exon:15341;Parent=Msa0372120-mRNA-1
chr3_1	exon	70439548	70439730	70439548	ID=Msa0372120-mRNA-1:exon:15340;Parent=Msa0372120-mRNA-1
chr3_1	exon	70439836	70439892	70439836	ID=Msa0372120-mRNA-1:exon:15339;Parent=Msa0372120-mRNA-1
chr3_1	exon	70441564	70441822	70441564	ID=Msa0372120-mRNA-1:exon:15338;Parent=Msa0372120-mRNA-1
chr3_1	five_prime_UTR	70441811	70441822	70441811	ID=Msa0372120-mRNA-1:five_prime_utr;Parent=Msa0372120-mRNA-1
chr3_1	CDS	70441564	70441810	70441564	ID=Msa0372120-mRNA-1:cds;Parent=Msa0372120-mRNA-1
chr3_1	CDS	70439836	70439892	70439836	ID=Msa0372120-mRNA-1:cds;Parent=Msa0372120-mRNA-1
chr3_1	CDS	70439548	70439730	70439548	ID=Msa0372120-mRNA-1:cds;Parent=Msa0372120-mRNA-1
chr3_1	CDS	70439333	70439517	70439333	ID=Msa0372120-mRNA-1:cds;Parent=Msa0372120-mRNA-1
chr3_1	CDS	70439212	70439319	70439212	ID=Msa0372120-mRNA-1:cds;Parent=Msa0372120-mRNA-1
chr3_1	CDS	70438919	70438948	70438919	ID=Msa0372120-mRNA-1:cds;Parent=Msa0372120-mRNA-1
chr3_1	three_prime_UTR	70438720	70438918	70438720	ID=Msa0372120-mRNA-1:three_prime_utr;Parent=Msa0372120-mRNA-1

Gene Sequence

>Msa0372120

ATGTTAGGCTTCACTTCACAAATTCCCATTGTTTGGCTACTACTATTATTGATGTCTACAACAATATTTGAAAGGTGCAATAGTAGCAATACGCAGCTTGGTAGTAACTGCAATGAGAAGGATCGTTCTGCATTGCTTCTCTTCAAACTTGGTGTGGAGAATCATTCCTCCAGCATGCTTTCCTCTTGGTCCATTAATGAAAAAAATTGTTGTTCATGGAAAGGAGTTCAATGTGACAACATCACAGGGTCTATTCCCAAATGCATAAGTAACATCACTGGCATGGGAGAAGCAAAGAAAACGAGTGAAATCCCCGCACAAGTTTTCAATCTAGTTCAACTCCAGTCATTGAACTTGACTCGAAATCATTTCACAGGAAAGATATCAAGAGACATCGGAGACATGAAAAACTTGGAATCTCTTGATCTATCCGACAATAAACTTGTTGGAGAAATTCCTGTTACCACGTCAACTTTGTCCTTCTTGATTGGACAAATCCCGGTTGGGACTCAACTTCAAAGTTTTGATGCTTCCTGCTATGTTGGGAATCCTGGACTTTGTGGAGCTCCTCTACCAATATGTGATCATGAGTCATACCTAGATGGAGGAGGACGCAATGATATTGATGATGATGAGAATTCTTTTTCACAGTCACTCTACTTTGGGTTGGGTTGGGTTTCTGGTGTATTTGTGGTTCTCTATTCCTCAACAGGGCTTGGAGGCACACTTATTCTCGGTTCCTTAATCACGTGTTTGTGGTTTTGGGATTTTCCAATTGACGTCCAAGACAGAATGCAGCTGGAAACATAG

Protein sequence

>Msa0372120

MLGFTSQIPIVWLLLLLMSTTIFERCNSSNTQLGSNCNEKDRSALLLFKLGVENHSSSMLSSWSINEKNCCSWKGVQCDNITGSIPKCISNITGMGEAKKTSEIPAQVFNLVQLQSLNLTRNHFTGKISRDIGDMKNLESLDLSDNKLVGEIPVTTSTLSFLIGQIPVGTQLQSFDASCYVGNPGLCGAPLPICDHESYLDGGGRNDIDDDENSFSQSLYFGLGWVSGVFVVLYSSTGLGGTLILGSLITCLWFWDFPIDVQDRMQLET*