AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0283680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0283680 MtrunA17_Chr2g0299071 73.894 226 58 1 1 225 246 471 5.01e-106 316
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 141 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCAACAAGACTTTGTAAT+TGG 0.123402 2_3:-21143973 None:intergenic
TTTGAAACAGTTACAGTTTC+AGG 0.156880 2_3:+21145374 Msa0283680:CDS
ATGTACTATTGTTTGTTTAA+TGG 0.179014 2_3:+21144292 Msa0283680:five_prime_UTR
ATCTGGCAGGAGTACATTTA+AGG 0.225316 2_3:+21142736 Msa0283680:intron
TTTATTAACAAAGATATTAA+TGG 0.243875 2_3:-21145548 None:intergenic
ATAAAGATTGAAACTTAATT+TGG 0.258274 2_3:-21141986 None:intergenic
AGTTGATGTTCAATGTAAAA+TGG 0.267685 2_3:+21147006 Msa0283680:three_prime_UTR
ATGTTTAATAGTTATGAATT+TGG 0.277635 2_3:+21143850 Msa0283680:intron
GCCCTGACGCATCGGATTAA+AGG 0.278575 2_3:+21144106 Msa0283680:five_prime_UTR
AGAACATTGCAGATCAATAT+AGG 0.285969 2_3:+21144331 Msa0283680:five_prime_UTR
CCAGGAACAATCCTGGTTTC+AGG 0.291918 2_3:+21142030 Msa0283680:five_prime_UTR
CTCAAGCCATCAAAGAAGTT+TGG 0.303084 2_3:+21145457 Msa0283680:CDS
CACACAATAGCTGGTTTCAT+TGG 0.304882 2_3:+21141822 Msa0283680:five_prime_UTR
TCAGTTCCAGTTTCAGTATA+TGG 0.306914 2_3:-21145604 None:intergenic
CCCTGGTTGAACCTTCTTCT+CGG 0.314639 2_3:-21144568 None:intergenic
GATAACAGAGATGAAAATTC+TGG 0.321341 2_3:+21145688 Msa0283680:three_prime_UTR
AGGAATATTACTTGGCCATT+TGG 0.321528 2_3:+21147063 Msa0283680:three_prime_UTR
TATTACAGTACTGGAATTCA+TGG 0.323839 2_3:+21142137 Msa0283680:intron
TGTCACTTTCTGCACCTCTT+TGG 0.325692 2_3:-21143700 None:intergenic
GGACAATAGCATACCCCTTA+TGG 0.326839 2_3:-21142184 None:intergenic
CGGACACAACACTAACATTT+AGG 0.330636 2_3:-21144212 None:intergenic
AATGTACCATATACTGAAAC+TGG 0.331288 2_3:+21145598 Msa0283680:three_prime_UTR
TTCTTCTGAGAGTCAACATT+TGG 0.331749 2_3:+21145064 Msa0283680:CDS
ATCAGCCATAAAAGATTGAT+TGG 0.335537 2_3:-21141775 None:intergenic
GGAAATCCAAACTTCTTTGA+TGG 0.341594 2_3:-21145463 None:intergenic
TCAAATGGTAACTCATTTGC+AGG 0.342582 2_3:-21144423 None:intergenic
AGCTTTGTTGAAGGGACTTT+GGG 0.346118 2_3:+21146966 Msa0283680:three_prime_UTR
TTAGTAAATTCATTCAATTA+AGG 0.348522 2_3:+21147212 Msa0283680:three_prime_UTR
CAGGAGGCTTCTTACAAGAT+AGG 0.348900 2_3:+21145114 Msa0283680:CDS
ATGGATGTTGATGAAGAAAA+TGG 0.359964 2_3:-21142165 None:intergenic
GAACATTGCAGATCAATATA+GGG 0.363626 2_3:+21144332 Msa0283680:five_prime_UTR
TTCTTCATCAACATCCATAA+GGG 0.368786 2_3:+21142170 Msa0283680:five_prime_UTR
CAGCTTTGTTGAAGGGACTT+TGG 0.372458 2_3:+21146965 Msa0283680:three_prime_UTR
AAACAACCTCAGACAGTTAC+TGG 0.375585 2_3:+21144447 Msa0283680:five_prime_UTR
CAGTCATTGAACACAGAATC+AGG 0.378372 2_3:+21145095 Msa0283680:CDS
GATATTACAGAAAGGTGTTT+GGG 0.386096 2_3:+21142761 Msa0283680:five_prime_UTR
TGTCTGTGTTTGTGCTTCAT+AGG 0.386652 2_3:+21144236 Msa0283680:five_prime_UTR
TGATATTACAGAAAGGTGTT+TGG 0.387833 2_3:+21142760 Msa0283680:five_prime_UTR
AATTAAGGACACCGTGCAAT+TGG 0.388794 2_3:+21145205 Msa0283680:CDS
ACACTGTTCTTTATTGCATC+AGG 0.391678 2_3:+21147043 Msa0283680:intron
TCGTCACGAAGGCTAGTAAT+GGG 0.396666 2_3:-21142570 None:intergenic
AGAAAGTAAAGCGAAAATTA+AGG 0.399900 2_3:+21145190 Msa0283680:CDS
TGCCTTTAATCCGATGCGTC+AGG 0.401100 2_3:-21144108 None:intergenic
GGCGATGATTCTTGAGAAGA+TGG 0.405494 2_3:-21143920 None:intergenic
TTCAGAAGATGAAGAATTTG+AGG 0.405608 2_3:-21146797 None:intergenic
CCTGAAACCAGGATTGTTCC+TGG 0.408939 2_3:-21142030 None:intergenic
GGGATAGGGAAGAATGGATA+TGG 0.411145 2_3:-21141852 None:intergenic
GTCTGAGGTTGTTTCTCAAA+TGG 0.416355 2_3:-21144438 None:intergenic
TTTCTTCATCAACATCCATA+AGG 0.416458 2_3:+21142169 Msa0283680:five_prime_UTR
TTACTTTCTTCAATATGTAC+TGG 0.418098 2_3:-21145176 None:intergenic
AGTTTCAGGAAACATGCCTT+TGG 0.433052 2_3:+21145388 Msa0283680:CDS
TCCCAATTACAAAGTCTTGT+TGG 0.439010 2_3:+21143971 Msa0283680:five_prime_UTR
GTATAACTATGTGTTGTATA+TGG 0.440201 2_3:+21145509 Msa0283680:exon
GGACTTACTTGATACTTTGT+TGG 0.440260 2_3:-21145026 None:intergenic
GACCTCATCACTCGTGCTTA+AGG 0.441730 2_3:-21143753 None:intergenic
GGAGAACTCCTAGCAATGTT+AGG 0.443960 2_3:+21144589 Msa0283680:CDS
TTCTGGAGGACCATTTGATC+AGG 0.446366 2_3:+21145705 Msa0283680:three_prime_UTR
CGTGGAACTTTCTTTGTCAT+CGG 0.452774 2_3:-21143999 None:intergenic
CTTGGTAAGAAACTTGCAAC+AGG 0.456620 2_3:+21145151 Msa0283680:CDS
TAGGGTGAAAAGTGCTTCCT+TGG 0.458095 2_3:+21145133 Msa0283680:CDS
GAAAATAGAAAATGTGGATA+AGG 0.459000 2_3:+21145487 Msa0283680:CDS
GTTATCATCAGTAGAAGTAC+TGG 0.459966 2_3:-21145671 None:intergenic
TCATGTTGAAGATGTTGCTT+TGG 0.460915 2_3:-21143941 None:intergenic
ACTTGATACTTTGTTGGAGG+TGG 0.461871 2_3:-21145020 None:intergenic
GATGGAGCACTTAAAACATC+AGG 0.463793 2_3:-21143902 None:intergenic
TCTTGTAATTAAAACTCAAA+AGG 0.466424 2_3:-21147113 None:intergenic
TTTAAAATTCAGGATTCTGA+AGG 0.468257 2_3:+21142600 Msa0283680:five_prime_UTR
TCGGATTAAAGGCATGTGTC+TGG 0.469915 2_3:+21144117 Msa0283680:five_prime_UTR
ACATCAGGAGAAAGCCTTTG+AGG 0.470123 2_3:-21143887 None:intergenic
CTTACTTGATACTTTGTTGG+AGG 0.474632 2_3:-21145023 None:intergenic
ACCAACAAGACTTTGTAATT+GGG 0.474970 2_3:-21143972 None:intergenic
TGGGAAGACATGTTTCCACT+TGG 0.475277 2_3:+21142780 Msa0283680:five_prime_UTR
TTGATGATAACCTGATCAAA+TGG 0.477480 2_3:-21145715 None:intergenic
GGTTTGTTGAACTGATTCTC+AGG 0.477643 2_3:-21146776 None:intergenic
ATTGCATCAGGAATATTACT+TGG 0.481361 2_3:+21147055 Msa0283680:intron
TAGAAGGACCACACAATAGC+TGG 0.485320 2_3:+21141813 Msa0283680:five_prime_UTR
TTGGATGGGATAGGGAAGAA+TGG 0.487417 2_3:-21141858 None:intergenic
AGCACGAGTGATGAGGTCTC+AGG 0.492649 2_3:+21143758 Msa0283680:five_prime_UTR
TGCAATGCCAGGAACAATCC+TGG 0.492768 2_3:+21142023 Msa0283680:five_prime_UTR
TTAATATTCAGCTTTGTTGA+AGG 0.497841 2_3:+21146957 Msa0283680:three_prime_UTR
GGGAAGACATGTTTCCACTT+GGG 0.502659 2_3:+21142781 Msa0283680:five_prime_UTR
TCTGATACAAAACAAAATAG+AGG 0.507430 2_3:+21144527 Msa0283680:CDS
TCTTCAATATTCCGAGAAGA+AGG 0.510014 2_3:+21144557 Msa0283680:CDS
TGAGAGTCAACATTTGGAGC+AGG 0.514270 2_3:+21145070 Msa0283680:CDS
AGCATATAGTAGAGATCAAG+AGG 0.520557 2_3:+21145313 Msa0283680:CDS
TAATATTCAGCTTTGTTGAA+GGG 0.523410 2_3:+21146958 Msa0283680:three_prime_UTR
ATATTTACTGCTTGTGACAC+AGG 0.523930 2_3:-21144372 None:intergenic
GGAAGACATGTTTCCACTTG+GGG 0.525712 2_3:+21142782 Msa0283680:five_prime_UTR
AGGAGGCTTCTTACAAGATA+GGG 0.528120 2_3:+21145115 Msa0283680:CDS
ATCGTCACGAAGGCTAGTAA+TGG 0.537072 2_3:-21142571 None:intergenic
TCATACCAACAAGAAGACAT+TGG 0.541594 2_3:+21144266 Msa0283680:five_prime_UTR
AGCCTTTGAGGAAATGTATG+TGG 0.545335 2_3:-21143875 None:intergenic
ATAAATGAATGCAGCTTCCA+TGG 0.550018 2_3:+21142264 Msa0283680:intron
TTTCCCGAAAATAGAAAATG+TGG 0.551322 2_3:+21145481 Msa0283680:CDS
GCCTTTAATCCGATGCGTCA+GGG 0.554911 2_3:-21144107 None:intergenic
TTTATGTAGCCCTGACGCAT+CGG 0.555679 2_3:+21144098 Msa0283680:five_prime_UTR
GAATTCTTACACAGGATATG+AGG 0.555986 2_3:+21144985 Msa0283680:intron
CACTAACATTTAGGCATCAG+TGG 0.557521 2_3:-21144203 None:intergenic
TTAAAATTCAGGATTCTGAA+GGG 0.560085 2_3:+21142601 Msa0283680:five_prime_UTR
CAATTATCTCAGCAATGACA+TGG 0.560823 2_3:-21146906 None:intergenic
TGAGGTGAGCAAGTATGAAA+AGG 0.564247 2_3:+21145624 Msa0283680:three_prime_UTR
TTTGTTGAAGGGACTTTGGG+AGG 0.565754 2_3:+21146969 Msa0283680:three_prime_UTR
AAGAAATAAAGATCAAGAAG+AGG 0.565984 2_3:+21145274 Msa0283680:CDS
AAATACTAACCATCTAAGCC+AGG 0.568110 2_3:+21145424 Msa0283680:CDS
CAAAACAAAATAGAGGATGA+TGG 0.570291 2_3:+21144534 Msa0283680:CDS
TCCCACATACATTTCCTCAA+AGG 0.572259 2_3:+21143873 Msa0283680:five_prime_UTR
GGGAATGAAATATCGCGTGC+AGG 0.574929 2_3:+21142621 Msa0283680:five_prime_UTR
ATCATTCAATTTGCACGTGG+AGG 0.577439 2_3:+21144393 Msa0283680:five_prime_UTR
GAGCAAGTATGAAAAGGTGC+AGG 0.579255 2_3:+21145630 Msa0283680:three_prime_UTR
TCTGAACCAGTAACTGTCTG+AGG 0.579483 2_3:-21144453 None:intergenic
TTAAGGTTGATATTACAGAA+AGG 0.580085 2_3:+21142753 Msa0283680:five_prime_UTR
GAGCTTCTTAACAGCCAAAG+AGG 0.591164 2_3:+21143686 Msa0283680:five_prime_UTR
CTAAATGTTAGTGTTGTGTC+CGG 0.592799 2_3:+21144213 Msa0283680:five_prime_UTR
TTCCACGACAAATGTTGTTG+AGG 0.594635 2_3:+21144015 Msa0283680:five_prime_UTR
ACATTGCTAGGAGTTCTCCC+TGG 0.599976 2_3:-21144585 None:intergenic
TCTTCATCAACATCCATAAG+GGG 0.601384 2_3:+21142171 Msa0283680:five_prime_UTR
TTTCTATCAGAGAGCTCCAA+AGG 0.602700 2_3:-21145404 None:intergenic
GCGTGACAGAATTCGTATGA+TGG 0.603215 2_3:+21142851 Msa0283680:five_prime_UTR
TCCGAGAAGAAGGTTCAACC+AGG 0.604600 2_3:+21144567 Msa0283680:CDS
ATATACTGAAACTGGAACTG+AGG 0.605588 2_3:+21145606 Msa0283680:three_prime_UTR
TAAATGAATGCAGCTTCCAT+GGG 0.606059 2_3:+21142265 Msa0283680:intron
GCCTTTGAGGAAATGTATGT+GGG 0.608477 2_3:-21143874 None:intergenic
AGCCTCAACAACATTTGTCG+TGG 0.613598 2_3:-21144017 None:intergenic
AAAATTCAGTACCTGAAACC+AGG 0.621327 2_3:-21142041 None:intergenic
CTGTTGCAAGTTTCTTACCA+AGG 0.628286 2_3:-21145150 None:intergenic
AGCCTTAAGCACGAGTGATG+AGG 0.632470 2_3:+21143751 Msa0283680:five_prime_UTR
CACACATTCAACTCTAGCAT+AGG 0.632494 2_3:-21141923 None:intergenic
GAAGACATGTTTCCACTTGG+GGG 0.635876 2_3:+21142783 Msa0283680:five_prime_UTR
GAGTATGAAATCAATGACAA+AGG 0.637828 2_3:+21142295 Msa0283680:five_prime_UTR
TGAAGCACAAACACAGACAC+CGG 0.638479 2_3:-21144232 None:intergenic
TTATGAATATACCAGAAGGA+AGG 0.640543 2_3:+21146744 Msa0283680:intron
AGGCCTAACTATACCTTAGG+GGG 0.643124 2_3:-21144639 None:intergenic
AACAGAGATGAAAATTCTGG+AGG 0.647018 2_3:+21145691 Msa0283680:three_prime_UTR
AGGGCTCAACTCCAATTGCA+CGG 0.653427 2_3:-21145216 None:intergenic
CAATGAAACCAGCTATTGTG+TGG 0.663486 2_3:-21141821 None:intergenic
CAGGCCTAACTATACCTTAG+GGG 0.667223 2_3:-21144640 None:intergenic
GATTGATGTTCGTGTCATGT+CGG 0.682812 2_3:-21144160 None:intergenic
CGTCACGAAGGCTAGTAATG+GGG 0.684087 2_3:-21142569 None:intergenic
CCGAGAAGAAGGTTCAACCA+GGG 0.684770 2_3:+21144568 Msa0283680:CDS
AATATCATTCAATTTGCACG+TGG 0.702829 2_3:+21144390 Msa0283680:five_prime_UTR
TCATTGAACACAGAATCAGG+AGG 0.760114 2_3:+21145098 Msa0283680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAATTTTGTGTATAT+TGG + chr2_3:21142340-21142359 Msa0283680:intron 10.0%
!!! ATTAAAAGTAATTTTTGATT+TGG + chr2_3:21143630-21143649 Msa0283680:intron 10.0%
!!! AATAAGTTTAAAATAGATTA+TGG - chr2_3:21144753-21144772 None:intergenic 10.0%
!! TTTATTAACAAAGATATTAA+TGG - chr2_3:21145551-21145570 None:intergenic 10.0%
!!! TTTTTTAACTTTTGTTTAAG+TGG - chr2_3:21141900-21141919 None:intergenic 15.0%
!! ATAAAGATTGAAACTTAATT+TGG - chr2_3:21141989-21142008 None:intergenic 15.0%
!! ATCTTCAAATTATCTATTAA+TGG - chr2_3:21142988-21143007 None:intergenic 15.0%
!! ATAGATAATTTGAAGATTAT+AGG + chr2_3:21142991-21143010 Msa0283680:intron 15.0%
!! TAGATAATTTGAAGATTATA+GGG + chr2_3:21142992-21143011 Msa0283680:intron 15.0%
!! TGTTATAATTGTGTTTAATA+CGG - chr2_3:21143431-21143450 None:intergenic 15.0%
!! ATGTTTAATAGTTATGAATT+TGG + chr2_3:21143850-21143869 Msa0283680:intron 15.0%
!!! GTTTTTTTGGTATATTTATA+GGG - chr2_3:21145238-21145257 None:intergenic 15.0%
!!! GATTTACAATGTTTTTTTAA+AGG - chr2_3:21146422-21146441 None:intergenic 15.0%
!!! ATTTTCCAATCAATCTTTTA+TGG + chr2_3:21141770-21141789 Msa0283680:five_prime_UTR 20.0%
!! TAAAAAAGAAAATCAACATG+TGG - chr2_3:21142099-21142118 None:intergenic 20.0%
!!! ATTGATTTTTATTACAGTAC+TGG + chr2_3:21142128-21142147 Msa0283680:intron 20.0%
!! ATTAAAATTAGAGACTTACA+AGG - chr2_3:21142329-21142348 None:intergenic 20.0%
!!! TTGTTATTAAACGTAACAAT+TGG + chr2_3:21142434-21142453 Msa0283680:intron 20.0%
!! TGTTATTAAACGTAACAATT+GGG + chr2_3:21142435-21142454 Msa0283680:intron 20.0%
!!! CGATTTGATTTTTAAAATTC+AGG + chr2_3:21142590-21142609 Msa0283680:five_prime_UTR 20.0%
!!! TTGAACCATTTTATCAAATA+GGG - chr2_3:21142662-21142681 None:intergenic 20.0%
!!! ATTGAACCATTTTATCAAAT+AGG - chr2_3:21142663-21142682 None:intergenic 20.0%
!! CATTTGTTTGTATTAACTTA+TGG - chr2_3:21143287-21143306 None:intergenic 20.0%
!! ATACAAACAAATGTAATTGT+TGG + chr2_3:21143294-21143313 Msa0283680:intron 20.0%
!! TACAAACAAATGTAATTGTT+GGG + chr2_3:21143295-21143314 Msa0283680:intron 20.0%
!! TTAGAAGTAATCTTGTAAAA+TGG + chr2_3:21143404-21143423 Msa0283680:intron 20.0%
!!! TATTTATGTTACTTTTGAAC+CGG + chr2_3:21143570-21143589 Msa0283680:intron 20.0%
!! TTCTAACAGTAATTAACTTA+TGG + chr2_3:21143600-21143619 Msa0283680:intron 20.0%
!! ATGTACTATTGTTTGTTTAA+TGG + chr2_3:21144292-21144311 Msa0283680:five_prime_UTR 20.0%
!!! CGTTTTTTTGGTATATTTAT+AGG - chr2_3:21145239-21145258 None:intergenic 20.0%
!!! TTATCCACATTTTCTATTTT+CGG - chr2_3:21145488-21145507 None:intergenic 20.0%
!!! GTTATCATCAACTTTTAATT+CGG + chr2_3:21145727-21145746 Msa0283680:intron 20.0%
!! TTGTTGAACTTTATAATGTA+AGG + chr2_3:21145759-21145778 Msa0283680:intron 20.0%
!! ATTTGAAGAAAAAATAGAAG+TGG + chr2_3:21145979-21145998 Msa0283680:intron 20.0%
!! GTTTATATAATTACAAGTGT+CGG + chr2_3:21146001-21146020 Msa0283680:intron 20.0%
!!! GAACAATTTTTTTTTAGTGA+AGG + chr2_3:21146327-21146346 Msa0283680:intron 20.0%
!!! TTACAATGTTTTTTTAAAGG+AGG - chr2_3:21146419-21146438 None:intergenic 20.0%
!!! TACAATGTTTTTCTTAAAGT+AGG - chr2_3:21146455-21146474 None:intergenic 20.0%
!! TAAACACTTATAGCATAATA+TGG - chr2_3:21146639-21146658 None:intergenic 20.0%
!! TCTTGTAATTAAAACTCAAA+AGG - chr2_3:21147116-21147135 None:intergenic 20.0%
!! TAAATGTTTTGCTAGTTAGA+AGG + chr2_3:21141797-21141816 Msa0283680:five_prime_UTR 25.0%
!! GAAAAATGGAAATTTTGGAT+GGG - chr2_3:21141875-21141894 None:intergenic 25.0%
!! TGAAAAATGGAAATTTTGGA+TGG - chr2_3:21141876-21141895 None:intergenic 25.0%
!! TGGTTGAAAAATGGAAATTT+TGG - chr2_3:21141880-21141899 None:intergenic 25.0%
! TTGTTTAAGTGGTTGAAAAA+TGG - chr2_3:21141889-21141908 None:intergenic 25.0%
! TAAGGAAAAATTTAGAAGCA+AGG - chr2_3:21142208-21142227 None:intergenic 25.0%
!! TTTAAAATTCAGGATTCTGA+AGG + chr2_3:21142600-21142619 Msa0283680:five_prime_UTR 25.0%
! TTAAAATTCAGGATTCTGAA+GGG + chr2_3:21142601-21142620 Msa0283680:five_prime_UTR 25.0%
! TAACACCCTATTTGATAAAA+TGG + chr2_3:21142654-21142673 Msa0283680:intron 25.0%
!!! TTAAGGTTGATATTACAGAA+AGG + chr2_3:21142753-21142772 Msa0283680:five_prime_UTR 25.0%
! TCTTAAACAATGCATACTAA+AGG + chr2_3:21142936-21142955 Msa0283680:intron 25.0%
! AGTATAATACAAACTTACCA+AGG - chr2_3:21142962-21142981 None:intergenic 25.0%
! TAGGATTACCAAACTATTAT+TGG + chr2_3:21143024-21143043 Msa0283680:intron 25.0%
! GAACATACAATATTTGTTCA+CGG - chr2_3:21143531-21143550 None:intergenic 25.0%
! TCTGATACAAAACAAAATAG+AGG + chr2_3:21144527-21144546 Msa0283680:CDS 25.0%
! TCAAATAAATCAATCCAAAC+AGG - chr2_3:21144662-21144681 None:intergenic 25.0%
! ATGTATAAGCTATTTGTGTA+AGG - chr2_3:21144836-21144855 None:intergenic 25.0%
!! GAAGAATCTTTCTTTTCATT+TGG - chr2_3:21145050-21145069 None:intergenic 25.0%
! TTACTTTCTTCAATATGTAC+TGG - chr2_3:21145179-21145198 None:intergenic 25.0%
! AGAAAGTAAAGCGAAAATTA+AGG + chr2_3:21145190-21145209 Msa0283680:CDS 25.0%
!!! TTTGAATCTGTTCGTTTTTT+TGG - chr2_3:21145251-21145270 None:intergenic 25.0%
! AAGAAATAAAGATCAAGAAG+AGG + chr2_3:21145274-21145293 Msa0283680:CDS 25.0%
!! TATCCACATTTTCTATTTTC+GGG - chr2_3:21145487-21145506 None:intergenic 25.0%
! GAAAATAGAAAATGTGGATA+AGG + chr2_3:21145487-21145506 Msa0283680:CDS 25.0%
! GTATAACTATGTGTTGTATA+TGG + chr2_3:21145509-21145528 Msa0283680:exon 25.0%
! TATAATGTAAGGTTAGATGT+TGG + chr2_3:21145770-21145789 Msa0283680:intron 25.0%
! TGTAGCACAAAAACTTTATA+TGG - chr2_3:21146069-21146088 None:intergenic 25.0%
! ATAAAAGTTGCAATCGTTAT+AGG + chr2_3:21146166-21146185 Msa0283680:intron 25.0%
! TAAAAGTTGCAATCGTTATA+GGG + chr2_3:21146167-21146186 Msa0283680:intron 25.0%
! TTACAAGACAAAGAAAAAAG+AGG + chr2_3:21146209-21146228 Msa0283680:three_prime_UTR 25.0%
! ATGATGCAAATCTTGTATAA+TGG + chr2_3:21146376-21146395 Msa0283680:intron 25.0%
! CTTATAGCATAATATGGATA+AGG - chr2_3:21146633-21146652 None:intergenic 25.0%
! AACTTTATGAATATACCAGA+AGG + chr2_3:21146740-21146759 Msa0283680:intron 25.0%
!!! TTTGTGTTTCTTGTTTTTGA+AGG - chr2_3:21146935-21146954 None:intergenic 25.0%
!!! TTAATATTCAGCTTTGTTGA+AGG + chr2_3:21146957-21146976 Msa0283680:three_prime_UTR 25.0%
!!! TAATATTCAGCTTTGTTGAA+GGG + chr2_3:21146958-21146977 Msa0283680:three_prime_UTR 25.0%
!! AGTTGATGTTCAATGTAAAA+TGG + chr2_3:21147006-21147025 Msa0283680:three_prime_UTR 25.0%
ATCAGCCATAAAAGATTGAT+TGG - chr2_3:21141778-21141797 None:intergenic 30.0%
! TATTACAGTACTGGAATTCA+TGG + chr2_3:21142137-21142156 Msa0283680:intron 30.0%
! ATGGATGTTGATGAAGAAAA+TGG - chr2_3:21142168-21142187 None:intergenic 30.0%
TTTCTTCATCAACATCCATA+AGG + chr2_3:21142169-21142188 Msa0283680:five_prime_UTR 30.0%
TTCTTCATCAACATCCATAA+GGG + chr2_3:21142170-21142189 Msa0283680:five_prime_UTR 30.0%
AGTTGACAATAGGAAGAATA+AGG - chr2_3:21142226-21142245 None:intergenic 30.0%
CCATTTAAGAAGTTGACAAT+AGG - chr2_3:21142236-21142255 None:intergenic 30.0%
CCTATTGTCAACTTCTTAAA+TGG + chr2_3:21142233-21142252 Msa0283680:intron 30.0%
GAGTATGAAATCAATGACAA+AGG + chr2_3:21142295-21142314 Msa0283680:five_prime_UTR 30.0%
TGACACTGACACATAAATAT+TGG + chr2_3:21142395-21142414 Msa0283680:intron 30.0%
!! ATGTTTTCTATCAGAAGTGT+CGG + chr2_3:21142481-21142500 Msa0283680:intron 30.0%
AGAATTTGGTATGACTTATC+TGG - chr2_3:21142509-21142528 None:intergenic 30.0%
TAAAAATCAAATCGTCACGA+AGG - chr2_3:21142584-21142603 None:intergenic 30.0%
AACATGATGCAGTAAATATC+TGG + chr2_3:21142719-21142738 Msa0283680:intron 30.0%
!! TGATATTACAGAAAGGTGTT+TGG + chr2_3:21142760-21142779 Msa0283680:five_prime_UTR 30.0%
!! GATATTACAGAAAGGTGTTT+GGG + chr2_3:21142761-21142780 Msa0283680:five_prime_UTR 30.0%
! GATTATAGGGTATCTTGTAT+AGG + chr2_3:21143005-21143024 Msa0283680:intron 30.0%
AGAGCTAACCAATAATAGTT+TGG - chr2_3:21143035-21143054 None:intergenic 30.0%
!! CTATTATTGGTTAGCTCTAT+AGG + chr2_3:21143037-21143056 Msa0283680:intron 30.0%
AGCTCTATAGGATAATAAGT+AGG + chr2_3:21143049-21143068 Msa0283680:intron 30.0%
!! TTAGCTCCTCATTTTTCAAT+GGG - chr2_3:21143151-21143170 None:intergenic 30.0%
!! TTTAGCTCCTCATTTTTCAA+TGG - chr2_3:21143152-21143171 None:intergenic 30.0%
ATTGAAAAATGAGGAGCTAA+AGG + chr2_3:21143151-21143170 Msa0283680:intron 30.0%
TTGAAAAATGAGGAGCTAAA+GGG + chr2_3:21143152-21143171 Msa0283680:intron 30.0%
ACAAATGTAATTGTTGGGTT+TGG + chr2_3:21143300-21143319 Msa0283680:intron 30.0%
TTCATAGATTACCGATATGT+GGG + chr2_3:21143323-21143342 Msa0283680:intron 30.0%
TACTTCTAAATCATACTGCA+GGG - chr2_3:21143393-21143412 None:intergenic 30.0%
TTACTTCTAAATCATACTGC+AGG - chr2_3:21143394-21143413 None:intergenic 30.0%
CTTTCTATTGATCAAGCTTA+GGG - chr2_3:21143459-21143478 None:intergenic 30.0%
TACTAAAACTGCTCTATAGT+CGG + chr2_3:21143480-21143499 Msa0283680:intron 30.0%
ACCAACAAGACTTTGTAATT+GGG - chr2_3:21143975-21143994 None:intergenic 30.0%
AACCAACAAGACTTTGTAAT+TGG - chr2_3:21143976-21143995 None:intergenic 30.0%
! ATTTTCCAATGTCTTCTTGT+TGG - chr2_3:21144274-21144293 None:intergenic 30.0%
AGAACATTGCAGATCAATAT+AGG + chr2_3:21144331-21144350 Msa0283680:five_prime_UTR 30.0%
GAACATTGCAGATCAATATA+GGG + chr2_3:21144332-21144351 Msa0283680:five_prime_UTR 30.0%
AATATCATTCAATTTGCACG+TGG + chr2_3:21144390-21144409 Msa0283680:five_prime_UTR 30.0%
CAAAACAAAATAGAGGATGA+TGG + chr2_3:21144534-21144553 Msa0283680:CDS 30.0%
! ATCATTTTCCTAACATTGCT+AGG - chr2_3:21144600-21144619 None:intergenic 30.0%
! GAATTCACTTGTTGAAAAAC+TGG - chr2_3:21144971-21144990 None:intergenic 30.0%
! TTTGAAACAGTTACAGTTTC+AGG + chr2_3:21145374-21145393 Msa0283680:CDS 30.0%
TTTCCCGAAAATAGAAAATG+TGG + chr2_3:21145481-21145500 Msa0283680:CDS 30.0%
AATGTACCATATACTGAAAC+TGG + chr2_3:21145598-21145617 Msa0283680:three_prime_UTR 30.0%
GATAACAGAGATGAAAATTC+TGG + chr2_3:21145688-21145707 Msa0283680:three_prime_UTR 30.0%
! TTGATGATAACCTGATCAAA+TGG - chr2_3:21145718-21145737 None:intergenic 30.0%
!!! GATGTTGGTAGTGATAATTT+TGG + chr2_3:21145785-21145804 Msa0283680:intron 30.0%
! CTGTTTTCATATTGTAACAC+TGG + chr2_3:21145819-21145838 Msa0283680:intron 30.0%
CAATGTTGCATTTAAGTATC+CGG + chr2_3:21145871-21145890 Msa0283680:intron 30.0%
CAATGTGTTAGTATTGTATC+TGG - chr2_3:21145947-21145966 None:intergenic 30.0%
CAGATACAATACTAACACAT+TGG + chr2_3:21145945-21145964 Msa0283680:intron 30.0%
GCACAAAAACTTTATATGGA+AGG - chr2_3:21146065-21146084 None:intergenic 30.0%
! TTTTATAACCTGAAAGGTGA+AGG - chr2_3:21146152-21146171 None:intergenic 30.0%
! TGCAACTTTTATAACCTGAA+AGG - chr2_3:21146158-21146177 None:intergenic 30.0%
CATGACGCAATATAGTTAAA+AGG - chr2_3:21146279-21146298 None:intergenic 30.0%
ATGCATTAACAATCTTGTGA+AGG + chr2_3:21146296-21146315 Msa0283680:intron 30.0%
ATTAAGATGTATATCCAGAG+AGG + chr2_3:21146659-21146678 Msa0283680:intron 30.0%
TTAAGATGTATATCCAGAGA+GGG + chr2_3:21146660-21146679 Msa0283680:intron 30.0%
!! TTAGAGACACTAGTTCTATA+AGG - chr2_3:21146686-21146705 None:intergenic 30.0%
TTATGAATATACCAGAAGGA+AGG + chr2_3:21146744-21146763 Msa0283680:intron 30.0%
TTCAGAAGATGAAGAATTTG+AGG - chr2_3:21146800-21146819 None:intergenic 30.0%
ATTGCATCAGGAATATTACT+TGG + chr2_3:21147055-21147074 Msa0283680:intron 30.0%
! TGGAAATTTTGGATGGGATA+GGG - chr2_3:21141869-21141888 None:intergenic 35.0%
! ATGGAAATTTTGGATGGGAT+AGG - chr2_3:21141870-21141889 None:intergenic 35.0%
AAAATTCAGTACCTGAAACC+AGG - chr2_3:21142044-21142063 None:intergenic 35.0%
TCTTCATCAACATCCATAAG+GGG + chr2_3:21142171-21142190 Msa0283680:five_prime_UTR 35.0%
ATAAATGAATGCAGCTTCCA+TGG + chr2_3:21142264-21142283 Msa0283680:intron 35.0%
TAAATGAATGCAGCTTCCAT+GGG + chr2_3:21142265-21142284 Msa0283680:intron 35.0%
!! TTCATACTCCATTTTTCCCA+TGG - chr2_3:21142284-21142303 None:intergenic 35.0%
ACAGGTCACAACATAGAATT+TGG - chr2_3:21142523-21142542 None:intergenic 35.0%
TATGTTGTGACCTGTTTGTT+CGG + chr2_3:21142528-21142547 Msa0283680:intron 35.0%
!! TAGCTCCTCATTTTTCAATG+GGG - chr2_3:21143150-21143169 None:intergenic 35.0%
GATTTCGTATTTGCACTAGA+AGG - chr2_3:21143214-21143233 None:intergenic 35.0%
GTTCATAGATTACCGATATG+TGG + chr2_3:21143322-21143341 Msa0283680:intron 35.0%
CCTTTCTATTGATCAAGCTT+AGG - chr2_3:21143460-21143479 None:intergenic 35.0%
CCTAAGCTTGATCAATAGAA+AGG + chr2_3:21143457-21143476 Msa0283680:intron 35.0%
CAATATTTGTTCACGGAGTT+CGG - chr2_3:21143524-21143543 None:intergenic 35.0%
TTACTGTTAGAACAGAAAGC+CGG - chr2_3:21143592-21143611 None:intergenic 35.0%
! TCATGTTGAAGATGTTGCTT+TGG - chr2_3:21143944-21143963 None:intergenic 35.0%
! TCCCAATTACAAAGTCTTGT+TGG + chr2_3:21143971-21143990 Msa0283680:five_prime_UTR 35.0%
CTAAATGTTAGTGTTGTGTC+CGG + chr2_3:21144213-21144232 Msa0283680:five_prime_UTR 35.0%
TCATACCAACAAGAAGACAT+TGG + chr2_3:21144266-21144285 Msa0283680:five_prime_UTR 35.0%
ATATTTACTGCTTGTGACAC+AGG - chr2_3:21144375-21144394 None:intergenic 35.0%
TCAAATGGTAACTCATTTGC+AGG - chr2_3:21144426-21144445 None:intergenic 35.0%
TCTTCAATATTCCGAGAAGA+AGG + chr2_3:21144557-21144576 Msa0283680:CDS 35.0%
TACTGACATAAGCACAAGTA+AGG + chr2_3:21144689-21144708 Msa0283680:intron 35.0%
TAAGCACAAGTAAGGATGTT+TGG + chr2_3:21144697-21144716 Msa0283680:intron 35.0%
TTCACATAAGCTAGCTATCA+TGG - chr2_3:21144788-21144807 None:intergenic 35.0%
CAACAAGTGAATTCTTACAC+AGG + chr2_3:21144977-21144996 Msa0283680:intron 35.0%
GAATTCTTACACAGGATATG+AGG + chr2_3:21144985-21145004 Msa0283680:intron 35.0%
CTTACTTGATACTTTGTTGG+AGG - chr2_3:21145026-21145045 None:intergenic 35.0%
GGACTTACTTGATACTTTGT+TGG - chr2_3:21145029-21145048 None:intergenic 35.0%
! TTCTTCTGAGAGTCAACATT+TGG + chr2_3:21145064-21145083 Msa0283680:CDS 35.0%
AGCATATAGTAGAGATCAAG+AGG + chr2_3:21145313-21145332 Msa0283680:CDS 35.0%
AAATACTAACCATCTAAGCC+AGG + chr2_3:21145424-21145443 Msa0283680:CDS 35.0%
! ACATTTTATCCTGGCTTAGA+TGG - chr2_3:21145436-21145455 None:intergenic 35.0%
GGAAATCCAAACTTCTTTGA+TGG - chr2_3:21145466-21145485 None:intergenic 35.0%
TCAGTTCCAGTTTCAGTATA+TGG - chr2_3:21145607-21145626 None:intergenic 35.0%
ATATACTGAAACTGGAACTG+AGG + chr2_3:21145606-21145625 Msa0283680:three_prime_UTR 35.0%
! GTTATCATCAGTAGAAGTAC+TGG - chr2_3:21145674-21145693 None:intergenic 35.0%
AACAGAGATGAAAATTCTGG+AGG + chr2_3:21145691-21145710 Msa0283680:three_prime_UTR 35.0%
CTTCTACAATAGCTGATAGT+AGG - chr2_3:21146105-21146124 None:intergenic 35.0%
CTACTATCAGCTATTGTAGA+AGG + chr2_3:21146103-21146122 Msa0283680:intron 35.0%
AAGCTATTCTATAGAGCTTG+TGG - chr2_3:21146546-21146565 None:intergenic 35.0%
! TAGCTTACGAAAACAGCTTT+TGG + chr2_3:21146560-21146579 Msa0283680:intron 35.0%
!!! TCTTTTCGAGTTTCATATGC+TGG + chr2_3:21146844-21146863 Msa0283680:three_prime_UTR 35.0%
CAATTATCTCAGCAATGACA+TGG - chr2_3:21146909-21146928 None:intergenic 35.0%
ACACTGTTCTTTATTGCATC+AGG + chr2_3:21147043-21147062 Msa0283680:intron 35.0%
AGGAATATTACTTGGCCATT+TGG + chr2_3:21147063-21147082 Msa0283680:three_prime_UTR 35.0%
TTGGCCATTTGGTCAAAAAA+GGG + chr2_3:21147074-21147093 Msa0283680:three_prime_UTR 35.0%
!!! AAGACCCTTTTTTGACCAAA+TGG - chr2_3:21147081-21147100 None:intergenic 35.0%
CAATGAAACCAGCTATTGTG+TGG - chr2_3:21141824-21141843 None:intergenic 40.0%
! CACACAATAGCTGGTTTCAT+TGG + chr2_3:21141822-21141841 Msa0283680:five_prime_UTR 40.0%
CACACATTCAACTCTAGCAT+AGG - chr2_3:21141926-21141945 None:intergenic 40.0%
!! AACCTATGTAGCATTGACAC+TGG + chr2_3:21142369-21142388 Msa0283680:intron 40.0%
AGACAACAAACCGAACAAAC+AGG - chr2_3:21142541-21142560 None:intergenic 40.0%
TGATGCAGTAAATATCTGGC+AGG + chr2_3:21142723-21142742 Msa0283680:intron 40.0%
! ATCTGGCAGGAGTACATTTA+AGG + chr2_3:21142736-21142755 Msa0283680:intron 40.0%
ACAATGCATACTAAAGGCCT+TGG + chr2_3:21142942-21142961 Msa0283680:intron 40.0%
CCAACAATACCTCAGAAAAG+CGG - chr2_3:21143111-21143130 None:intergenic 40.0%
CGTATTTGCACTAGAAGGAA+AGG - chr2_3:21143209-21143228 None:intergenic 40.0%
TCCCACATACATTTCCTCAA+AGG + chr2_3:21143873-21143892 Msa0283680:five_prime_UTR 40.0%
! GCCTTTGAGGAAATGTATGT+GGG - chr2_3:21143877-21143896 None:intergenic 40.0%
! AGCCTTTGAGGAAATGTATG+TGG - chr2_3:21143878-21143897 None:intergenic 40.0%
! GATGGAGCACTTAAAACATC+AGG - chr2_3:21143905-21143924 None:intergenic 40.0%
CGTGGAACTTTCTTTGTCAT+CGG - chr2_3:21144002-21144021 None:intergenic 40.0%
TTCCACGACAAATGTTGTTG+AGG + chr2_3:21144015-21144034 Msa0283680:five_prime_UTR 40.0%
GATTGATGTTCGTGTCATGT+CGG - chr2_3:21144163-21144182 None:intergenic 40.0%
CACTAACATTTAGGCATCAG+TGG - chr2_3:21144206-21144225 None:intergenic 40.0%
CGGACACAACACTAACATTT+AGG - chr2_3:21144215-21144234 None:intergenic 40.0%
TGTCTGTGTTTGTGCTTCAT+AGG + chr2_3:21144236-21144255 Msa0283680:five_prime_UTR 40.0%
!!! TGACACAGGTTTTGTTGATG+AGG - chr2_3:21144361-21144380 None:intergenic 40.0%
ATCATTCAATTTGCACGTGG+AGG + chr2_3:21144393-21144412 Msa0283680:five_prime_UTR 40.0%
!! GTCTGAGGTTGTTTCTCAAA+TGG - chr2_3:21144441-21144460 None:intergenic 40.0%
AAACAACCTCAGACAGTTAC+TGG + chr2_3:21144447-21144466 Msa0283680:five_prime_UTR 40.0%
!!! TTTTGAAAGTGTTCCCCCTA+AGG + chr2_3:21144626-21144645 Msa0283680:CDS 40.0%
ACAGGCCTAACTATACCTTA+GGG - chr2_3:21144644-21144663 None:intergenic 40.0%
AACAGGCCTAACTATACCTT+AGG - chr2_3:21144645-21144664 None:intergenic 40.0%
AAGGTATAGTTAGGCCTGTT+TGG + chr2_3:21144645-21144664 Msa0283680:intron 40.0%
TAGCTATCATGGAGAGCTTA+TGG - chr2_3:21144777-21144796 None:intergenic 40.0%
! CACAACACTTGAGCATTGTT+TGG - chr2_3:21144912-21144931 None:intergenic 40.0%
ACTTGATACTTTGTTGGAGG+TGG - chr2_3:21145023-21145042 None:intergenic 40.0%
CAGTCATTGAACACAGAATC+AGG + chr2_3:21145095-21145114 Msa0283680:CDS 40.0%
TCATTGAACACAGAATCAGG+AGG + chr2_3:21145098-21145117 Msa0283680:CDS 40.0%
AGGAGGCTTCTTACAAGATA+GGG + chr2_3:21145115-21145134 Msa0283680:CDS 40.0%
CTGTTGCAAGTTTCTTACCA+AGG - chr2_3:21145153-21145172 None:intergenic 40.0%
CTTGGTAAGAAACTTGCAAC+AGG + chr2_3:21145151-21145170 Msa0283680:CDS 40.0%
AATTAAGGACACCGTGCAAT+TGG + chr2_3:21145205-21145224 Msa0283680:CDS 40.0%
AGTTTCAGGAAACATGCCTT+TGG + chr2_3:21145388-21145407 Msa0283680:CDS 40.0%
TTTCTATCAGAGAGCTCCAA+AGG - chr2_3:21145407-21145426 None:intergenic 40.0%
! GGCTTGAGTACATTTTATCC+TGG - chr2_3:21145445-21145464 None:intergenic 40.0%
CTCAAGCCATCAAAGAAGTT+TGG + chr2_3:21145457-21145476 Msa0283680:CDS 40.0%
TGAGGTGAGCAAGTATGAAA+AGG + chr2_3:21145624-21145643 Msa0283680:three_prime_UTR 40.0%
GTTGCAATCGTTATAGGGTT+TGG + chr2_3:21146172-21146191 Msa0283680:intron 40.0%
!! GGTTTGTTGAACTGATTCTC+AGG - chr2_3:21146779-21146798 None:intergenic 40.0%
!! AGCTTTGTTGAAGGGACTTT+GGG + chr2_3:21146966-21146985 Msa0283680:three_prime_UTR 40.0%
CTTGGCCATTTGGTCAAAAA+AGG + chr2_3:21147073-21147092 Msa0283680:three_prime_UTR 40.0%
TAGAAGGACCACACAATAGC+TGG + chr2_3:21141813-21141832 Msa0283680:five_prime_UTR 45.0%
GGGATAGGGAAGAATGGATA+TGG - chr2_3:21141855-21141874 None:intergenic 45.0%
TTGGATGGGATAGGGAAGAA+TGG - chr2_3:21141861-21141880 None:intergenic 45.0%
! ATTTTGCACTCTGCAATGCC+AGG + chr2_3:21142012-21142031 Msa0283680:five_prime_UTR 45.0%
GGACAATAGCATACCCCTTA+TGG - chr2_3:21142187-21142206 None:intergenic 45.0%
TGCAGCTTCCATGGGAAAAA+TGG + chr2_3:21142273-21142292 Msa0283680:intron 45.0%
GTCCAGTGTCAATGCTACAT+AGG - chr2_3:21142374-21142393 None:intergenic 45.0%
CGTAACAATTGGGCCAATGT+CGG + chr2_3:21142445-21142464 Msa0283680:intron 45.0%
GTCTTACATCGATCCGACAT+TGG - chr2_3:21142461-21142480 None:intergenic 45.0%
TCGTCACGAAGGCTAGTAAT+GGG - chr2_3:21142573-21142592 None:intergenic 45.0%
ATCGTCACGAAGGCTAGTAA+TGG - chr2_3:21142574-21142593 None:intergenic 45.0%
TGGGAAGACATGTTTCCACT+TGG + chr2_3:21142780-21142799 Msa0283680:five_prime_UTR 45.0%
GGGAAGACATGTTTCCACTT+GGG + chr2_3:21142781-21142800 Msa0283680:five_prime_UTR 45.0%
GGAAGACATGTTTCCACTTG+GGG + chr2_3:21142782-21142801 Msa0283680:five_prime_UTR 45.0%
GAAGACATGTTTCCACTTGG+GGG + chr2_3:21142783-21142802 Msa0283680:five_prime_UTR 45.0%
GCGTGACAGAATTCGTATGA+TGG + chr2_3:21142851-21142870 Msa0283680:five_prime_UTR 45.0%
GGTGCAACGTACTTGAGATT+TGG - chr2_3:21143090-21143109 None:intergenic 45.0%
!!! CCGCTTTTCTGAGGTATTGT+TGG + chr2_3:21143108-21143127 Msa0283680:intron 45.0%
GTGAGCCCCATTGAAAAATG+AGG + chr2_3:21143142-21143161 Msa0283680:intron 45.0%
TCAACTCTCGTGTATGGCTT+AGG + chr2_3:21143179-21143198 Msa0283680:intron 45.0%
AAACTGCTCTATAGTCGGAG+AGG + chr2_3:21143485-21143504 Msa0283680:intron 45.0%
GAGCTTCTTAACAGCCAAAG+AGG + chr2_3:21143686-21143705 Msa0283680:five_prime_UTR 45.0%
!! TGTCACTTTCTGCACCTCTT+TGG - chr2_3:21143703-21143722 None:intergenic 45.0%
ACATCAGGAGAAAGCCTTTG+AGG - chr2_3:21143890-21143909 None:intergenic 45.0%
GGCGATGATTCTTGAGAAGA+TGG - chr2_3:21143923-21143942 None:intergenic 45.0%
AGCCTCAACAACATTTGTCG+TGG - chr2_3:21144020-21144039 None:intergenic 45.0%
TTTATGTAGCCCTGACGCAT+CGG + chr2_3:21144098-21144117 Msa0283680:five_prime_UTR 45.0%
! TCGGATTAAAGGCATGTGTC+TGG + chr2_3:21144117-21144136 Msa0283680:five_prime_UTR 45.0%
TGAAGCACAAACACAGACAC+CGG - chr2_3:21144235-21144254 None:intergenic 45.0%
TCTGAACCAGTAACTGTCTG+AGG - chr2_3:21144456-21144475 None:intergenic 45.0%
GGAGAACTCCTAGCAATGTT+AGG + chr2_3:21144589-21144608 Msa0283680:CDS 45.0%
GTTCCCCCTAAGGTATAGTT+AGG + chr2_3:21144636-21144655 Msa0283680:intron 45.0%
AGGCCTAACTATACCTTAGG+GGG - chr2_3:21144642-21144661 None:intergenic 45.0%
CAGGCCTAACTATACCTTAG+GGG - chr2_3:21144643-21144662 None:intergenic 45.0%
! AGGATGTTTGGAACAGCTCA+TGG + chr2_3:21144709-21144728 Msa0283680:intron 45.0%
! TGAGAGTCAACATTTGGAGC+AGG + chr2_3:21145070-21145089 Msa0283680:CDS 45.0%
CAGGAGGCTTCTTACAAGAT+AGG + chr2_3:21145114-21145133 Msa0283680:CDS 45.0%
!! TAGGGTGAAAAGTGCTTCCT+TGG + chr2_3:21145133-21145152 Msa0283680:CDS 45.0%
! GAGCAAGTATGAAAAGGTGC+AGG + chr2_3:21145630-21145649 Msa0283680:three_prime_UTR 45.0%
! TTCTGGAGGACCATTTGATC+AGG + chr2_3:21145705-21145724 Msa0283680:three_prime_UTR 45.0%
AAGTATCCGGTTTCTCGTTC+AGG + chr2_3:21145884-21145903 Msa0283680:intron 45.0%
GTAAAGCCTGAACGAGAAAC+CGG - chr2_3:21145893-21145912 None:intergenic 45.0%
TGTCAGTGACAGTGCTTCAT+AGG - chr2_3:21145924-21145943 None:intergenic 45.0%
CGTTGATACGTGTTAGACAC+TGG + chr2_3:21146029-21146048 Msa0283680:intron 45.0%
TTCTCACACCTTCACCTTTC+AGG + chr2_3:21146141-21146160 Msa0283680:intron 45.0%
! TAGTTCTATAAGGCCCTCTC+TGG - chr2_3:21146676-21146695 None:intergenic 45.0%
!! CAGCTTTGTTGAAGGGACTT+TGG + chr2_3:21146965-21146984 Msa0283680:three_prime_UTR 45.0%
TTTGTTGAAGGGACTTTGGG+AGG + chr2_3:21146969-21146988 Msa0283680:three_prime_UTR 45.0%
!! AAAATTAAATAAATATAACA+AGG - chr2_3:21146254-21146273 None:intergenic 5.0%
TGCAATGCCAGGAACAATCC+TGG + chr2_3:21142023-21142042 Msa0283680:five_prime_UTR 50.0%
CCTGAAACCAGGATTGTTCC+TGG - chr2_3:21142033-21142052 None:intergenic 50.0%
CCAGGAACAATCCTGGTTTC+AGG + chr2_3:21142030-21142049 Msa0283680:five_prime_UTR 50.0%
CGTCACGAAGGCTAGTAATG+GGG - chr2_3:21142572-21142591 None:intergenic 50.0%
GGGAATGAAATATCGCGTGC+AGG + chr2_3:21142621-21142640 Msa0283680:five_prime_UTR 50.0%
!! TACGTTGCACCGCTTTTCTG+AGG + chr2_3:21143099-21143118 Msa0283680:intron 50.0%
GGCTTGTCAACTCTCGTGTA+TGG + chr2_3:21143173-21143192 Msa0283680:intron 50.0%
TGCTCTATAGTCGGAGAGGT+AGG + chr2_3:21143489-21143508 Msa0283680:intron 50.0%
AGCCTTAAGCACGAGTGATG+AGG + chr2_3:21143751-21143770 Msa0283680:five_prime_UTR 50.0%
GACCTCATCACTCGTGCTTA+AGG - chr2_3:21143756-21143775 None:intergenic 50.0%
GCCTTTAATCCGATGCGTCA+GGG - chr2_3:21144110-21144129 None:intergenic 50.0%
TGCCTTTAATCCGATGCGTC+AGG - chr2_3:21144111-21144130 None:intergenic 50.0%
TCCGAGAAGAAGGTTCAACC+AGG + chr2_3:21144567-21144586 Msa0283680:CDS 50.0%
CCCTGGTTGAACCTTCTTCT+CGG - chr2_3:21144571-21144590 None:intergenic 50.0%
CCGAGAAGAAGGTTCAACCA+GGG + chr2_3:21144568-21144587 Msa0283680:CDS 50.0%
ACATTGCTAGGAGTTCTCCC+TGG - chr2_3:21144588-21144607 None:intergenic 50.0%
AGGGCTCAACTCCAATTGCA+CGG - chr2_3:21145219-21145238 None:intergenic 50.0%
GGCACTATTCTCCTTCCTTC+TGG - chr2_3:21146758-21146777 None:intergenic 50.0%
GACATGTTTCCACTTGGGGG+AGG + chr2_3:21142786-21142805 Msa0283680:five_prime_UTR 55.0%
CGAGCAAGCTGCCCACATAT+CGG - chr2_3:21143337-21143356 None:intergenic 55.0%
GTCGGAGAGGTAGGCAGAAT+TGG + chr2_3:21143498-21143517 Msa0283680:intron 55.0%
AGCACGAGTGATGAGGTCTC+AGG + chr2_3:21143758-21143777 Msa0283680:five_prime_UTR 55.0%
GCCCTGACGCATCGGATTAA+AGG + chr2_3:21144106-21144125 Msa0283680:five_prime_UTR 55.0%
TGCAACTGTCCTCCCCCAAG+TGG - chr2_3:21142798-21142817 None:intergenic 60.0%
! ATGTGGGCAGCTTGCTCGAG+CGG + chr2_3:21143339-21143358 Msa0283680:intron 60.0%
! TGTGGGCAGCTTGCTCGAGC+GGG + chr2_3:21143340-21143359 Msa0283680:intron 65.0%
TGCTCGAGCGGGACTGTGAC+TGG + chr2_3:21143351-21143370 Msa0283680:intron 65.0%
GCTCGAGCGGGACTGTGACT+GGG + chr2_3:21143352-21143371 Msa0283680:intron 65.0%
CTCGAGCGGGACTGTGACTG+GGG + chr2_3:21143353-21143372 Msa0283680:intron 65.0%
AGCGGGACTGTGACTGGGGT+GGG + chr2_3:21143357-21143376 Msa0283680:intron 65.0%
GAGCGGGACTGTGACTGGGG+TGG + chr2_3:21143356-21143375 Msa0283680:intron 70.0%
GCGGGACTGTGACTGGGGTG+GGG + chr2_3:21143358-21143377 Msa0283680:intron 70.0%
CGGGACTGTGACTGGGGTGG+GGG + chr2_3:21143359-21143378 Msa0283680:intron 70.0%
GGGACTGTGACTGGGGTGGG+GGG + chr2_3:21143360-21143379 Msa0283680:intron 70.0%
GGACTGTGACTGGGGTGGGG+GGG + chr2_3:21143361-21143380 Msa0283680:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 21141760 21147234 21141760 ID=Msa0283680;Name=Msa0283680
chr2_3 mRNA 21141760 21147234 21141760 ID=Msa0283680-mRNA-1;Parent=Msa0283680;Name=Msa0283680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=1340|0.9|0.90|1|0.9|0.63|11|707|226
chr2_3 exon 21141760 21142051 21141760 ID=Msa0283680-mRNA-1:exon:8307;Parent=Msa0283680-mRNA-1
chr2_3 exon 21142145 21142192 21142145 ID=Msa0283680-mRNA-1:exon:8308;Parent=Msa0283680-mRNA-1
chr2_3 exon 21142278 21142329 21142278 ID=Msa0283680-mRNA-1:exon:8309;Parent=Msa0283680-mRNA-1
chr2_3 exon 21142569 21142642 21142569 ID=Msa0283680-mRNA-1:exon:8310;Parent=Msa0283680-mRNA-1
chr2_3 exon 21142745 21142872 21142745 ID=Msa0283680-mRNA-1:exon:8311;Parent=Msa0283680-mRNA-1
chr2_3 exon 21143656 21143779 21143656 ID=Msa0283680-mRNA-1:exon:8312;Parent=Msa0283680-mRNA-1
chr2_3 exon 21143861 21144647 21143861 ID=Msa0283680-mRNA-1:exon:8313;Parent=Msa0283680-mRNA-1
chr2_3 exon 21144999 21145726 21144999 ID=Msa0283680-mRNA-1:exon:8314;Parent=Msa0283680-mRNA-1
chr2_3 exon 21146188 21146230 21146188 ID=Msa0283680-mRNA-1:exon:8315;Parent=Msa0283680-mRNA-1
chr2_3 exon 21146759 21147032 21146759 ID=Msa0283680-mRNA-1:exon:8316;Parent=Msa0283680-mRNA-1
chr2_3 exon 21147057 21147234 21147057 ID=Msa0283680-mRNA-1:exon:8317;Parent=Msa0283680-mRNA-1
chr2_3 five_prime_UTR 21141760 21142051 21141760 ID=Msa0283680-mRNA-1:five_prime_utr;Parent=Msa0283680-mRNA-1
chr2_3 five_prime_UTR 21142145 21142192 21142145 ID=Msa0283680-mRNA-1:five_prime_utr;Parent=Msa0283680-mRNA-1
chr2_3 five_prime_UTR 21142278 21142329 21142278 ID=Msa0283680-mRNA-1:five_prime_utr;Parent=Msa0283680-mRNA-1
chr2_3 five_prime_UTR 21142569 21142642 21142569 ID=Msa0283680-mRNA-1:five_prime_utr;Parent=Msa0283680-mRNA-1
chr2_3 five_prime_UTR 21142745 21142872 21142745 ID=Msa0283680-mRNA-1:five_prime_utr;Parent=Msa0283680-mRNA-1
chr2_3 five_prime_UTR 21143656 21143779 21143656 ID=Msa0283680-mRNA-1:five_prime_utr;Parent=Msa0283680-mRNA-1
chr2_3 five_prime_UTR 21143861 21144482 21143861 ID=Msa0283680-mRNA-1:five_prime_utr;Parent=Msa0283680-mRNA-1
chr2_3 CDS 21144483 21144647 21144483 ID=Msa0283680-mRNA-1:cds;Parent=Msa0283680-mRNA-1
chr2_3 CDS 21144999 21145514 21144999 ID=Msa0283680-mRNA-1:cds;Parent=Msa0283680-mRNA-1
chr2_3 three_prime_UTR 21145515 21145726 21145515 ID=Msa0283680-mRNA-1:three_prime_utr;Parent=Msa0283680-mRNA-1
chr2_3 three_prime_UTR 21146188 21146230 21146188 ID=Msa0283680-mRNA-1:three_prime_utr;Parent=Msa0283680-mRNA-1
chr2_3 three_prime_UTR 21146759 21147032 21146759 ID=Msa0283680-mRNA-1:three_prime_utr;Parent=Msa0283680-mRNA-1
chr2_3 three_prime_UTR 21147057 21147234 21147057 ID=Msa0283680-mRNA-1:three_prime_utr;Parent=Msa0283680-mRNA-1
Gene Sequence

>Msa0283680

ATGAATTCTTTAAGATCAGAAAAAACTATTGTTGTTACAAATAATCTGATACAAAACAAAATAGAGGATGATGGTCTTCAATATTCCGAGAAGAAGGTTCAACCAGGGAGAACTCCTAGCAATGTTAGGAAAATGATAAGTGCTTTTGAAAGTGTTCCCCCTAAGGATATGAGGTCTCATATTAAACCACCTCCAACAAAGTATCAAGTAAGTCCAAATGAAAAGAAAGATTCTTCTGAGAGTCAACATTTGGAGCAGGATCAGTCATTGAACACAGAATCAGGAGGCTTCTTACAAGATAGGGTGAAAAGTGCTTCCTTGGTAAGAAACTTGCAACAGGTTCCAGTACATATTGAAGAAAGTAAAGCGAAAATTAAGGACACCGTGCAATTGGAGTTGAGCCCTATAAATATACCAAAAAAACGAACAGATTCAAATGCAAGAAATAAAGATCAAGAAGAGGAGTCAAATAGCAAAGTAGCATATAGTAGAGATCAAGAGGAAGAGAGAAATCACAGAAATTTGATGAGAACATCTACATTTGAAACAGTTACAGTTTCAGGAAACATGCCTTTGGAGCTCTCTGATAGAAATACTAACCATCTAAGCCAGGATAAAATGTACTCAAGCCATCAAAGAAGTTTGGATTTCCCGAAAATAGAAAATGTGGATAAGGTATAA

Protein sequence

>Msa0283680

MNSLRSEKTIVVTNNLIQNKIEDDGLQYSEKKVQPGRTPSNVRKMISAFESVPPKDMRSHIKPPPTKYQVSPNEKKDSSESQHLEQDQSLNTESGGFLQDRVKSASLVRNLQQVPVHIEESKAKIKDTVQLELSPINIPKKRTDSNARNKDQEEESNSKVAYSRDQEEERNHRNLMRTSTFETVTVSGNMPLELSDRNTNHLSQDKMYSSHQRSLDFPKIENVDKV*