AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1375890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375890 MtrunA17_Chr3g0130251 96.632 475 16 0 1 475 1 475 0.0 947
Msa1375890 MtrunA17_Chr7g0270821 54.271 398 179 2 69 466 38 432 3.17e-159 459
Msa1375890 MtrunA17_Chr3g0095221 47.742 465 211 6 8 466 1 439 3.23e-153 443
Msa1375890 MtrunA17_Chr1g0193961 52.736 402 186 3 66 467 35 432 4.97e-151 438
Msa1375890 MtrunA17_Chr8g0387391 49.392 411 202 3 65 470 31 440 1.99e-145 424
Msa1375890 MtrunA17_Chr7g0255311 49.515 412 203 2 60 466 47 458 1.28e-141 415
Msa1375890 MtrunA17_Chr2g0295241 49.875 399 199 1 71 468 32 430 1.54e-138 406
Msa1375890 MtrunA17_Chr5g0442221 52.152 395 183 3 77 466 45 438 5.25e-138 404
Msa1375890 MtrunA17_Chr1g0202651 50.000 398 197 1 72 467 51 448 8.14e-138 405
Msa1375890 MtrunA17_Chr4g0070281 50.372 403 187 6 72 466 71 468 8.37e-137 403
Msa1375890 MtrunA17_Chr4g0067811 48.515 404 207 1 64 466 28 431 1.07e-136 401
Msa1375890 MtrunA17_Chr2g0301091 49.750 400 188 6 72 463 52 446 8.11e-134 395
Msa1375890 MtrunA17_Chr7g0248451 45.161 434 234 2 40 470 19 451 3.61e-133 393
Msa1375890 MtrunA17_Chr8g0348491 48.232 396 203 1 77 470 56 451 2.74e-131 388
Msa1375890 MtrunA17_Chr1g0202641 48.241 398 204 1 72 467 51 448 5.50e-129 397
Msa1375890 MtrunA17_Chr1g0202641 47.607 397 206 1 72 466 551 947 8.42e-125 387
Msa1375890 MtrunA17_Chr1g0202621 46.650 403 207 2 66 466 38 434 2.81e-126 375
Msa1375890 MtrunA17_Chr2g0319881 51.748 143 67 1 68 210 37 177 2.42e-42 148
Msa1375890 MtrunA17_Chr5g0418411 26.702 382 222 14 39 408 2 337 5.03e-24 103
Msa1375890 MtrunA17_Chr8g0365901 25.783 415 259 13 73 473 62 441 9.64e-23 100
Msa1375890 MtrunA17_Chr6g0449961 26.266 316 184 10 78 382 47 324 1.89e-22 99.4
Msa1375890 MtrunA17_Chr3g0121891 25.130 386 222 12 39 408 2 336 4.17e-22 98.2
Msa1375890 MtrunA17_Chr3g0121881 27.893 337 191 12 56 378 13 311 6.15e-21 94.7
Msa1375890 MtrunA17_Chr1g0173451 27.753 227 137 4 189 408 172 378 2.14e-20 93.6
Msa1375890 MtrunA17_Chr7g0258111 25.467 428 243 16 67 466 39 418 6.87e-20 92.0
Msa1375890 MtrunA17_Chr6g0468871 54.545 77 35 0 269 345 22 98 8.80e-20 84.3
Msa1375890 MtrunA17_Chr3g0089021 26.061 330 203 10 147 463 135 436 5.30e-19 89.4
Msa1375890 MtrunA17_Chr2g0319871 57.812 64 27 0 218 281 1 64 5.87e-19 80.9
Msa1375890 MtrunA17_Chr7g0257701 29.767 215 123 5 179 386 188 381 8.57e-19 88.2
Msa1375890 MtrunA17_Chr4g0043661 25.980 408 218 15 39 435 2 336 1.42e-18 87.4
Msa1375890 MtrunA17_Chr2g0332801 26.909 275 173 7 174 437 143 400 3.78e-18 86.7
Msa1375890 MtrunA17_Chr5g0413411 23.099 342 187 10 77 378 122 427 6.24e-18 86.7
Msa1375890 MtrunA17_Chr8g0365891 26.100 341 179 11 77 378 108 414 7.60e-18 86.3
Msa1375890 MtrunA17_Chr4g0020771 26.557 305 186 10 177 463 157 441 1.06e-17 85.1
Msa1375890 MtrunA17_Chr3g0100091 29.245 212 121 6 179 382 77 267 1.15e-17 84.3
Msa1375890 MtrunA17_Chr5g0413141 25.157 318 195 10 78 382 61 348 1.25e-17 85.1
Msa1375890 MtrunA17_Chr2g0303941 33.333 198 108 5 189 378 122 303 3.47e-17 83.2
Msa1375890 MtrunA17_Chr7g0270361 26.425 386 230 14 75 442 66 415 3.58e-17 84.0
Msa1375890 MtrunA17_Chr7g0230891 25.187 401 247 13 77 463 38 399 5.12e-17 82.8
Msa1375890 MtrunA17_Chr6g0461181 24.503 453 264 17 59 466 17 436 6.22e-17 82.8
Msa1375890 MtrunA17_Chr4g0052621 26.582 316 187 9 74 374 63 348 6.41e-17 83.2
Msa1375890 MtrunA17_Chr4g0043431 24.750 400 252 13 77 463 36 399 1.10e-16 82.0
Msa1375890 MtrunA17_Chr1g0194231 28.797 316 176 13 81 378 86 370 1.60e-16 82.0
Msa1375890 MtrunA17_Chr8g0337571 26.198 313 184 11 75 378 30 304 4.48e-16 80.1
Msa1375890 MtrunA17_Chr2g0332971 26.498 317 185 12 77 378 29 312 1.77e-15 78.2
Msa1375890 MtrunA17_Chr8g0336481 28.634 227 126 7 189 408 51 248 3.89e-15 75.5
Msa1375890 MtrunA17_Chr8g0337581 25.872 344 207 11 56 390 13 317 7.13e-15 76.3
Msa1375890 MtrunA17_Chr4g0067631 23.729 413 259 14 71 464 47 422 8.43e-14 73.2
Msa1375890 MtrunA17_Chr2g0293681 28.986 207 121 6 189 382 165 358 9.31e-14 73.2
Msa1375890 MtrunA17_Chr7g0228411 26.330 376 205 17 37 378 5 342 4.41e-12 67.8
Msa1375890 MtrunA17_Chr1g0150291 24.841 314 197 10 77 382 46 328 5.86e-12 67.4
Msa1375890 MtrunA17_Chr1g0195221 24.451 319 190 11 75 378 34 316 5.95e-12 67.4
Msa1375890 MtrunA17_Chr2g0291841 27.237 257 159 8 218 463 122 361 6.37e-12 67.0
Msa1375890 MtrunA17_Chr7g0257721 24.595 309 150 11 75 353 75 330 1.09e-11 66.2
Msa1375890 MtrunA17_Chr8g0337601 30.636 173 97 4 225 390 12 168 1.16e-11 64.7
Msa1375890 MtrunA17_Chr4g0018151 29.167 192 108 5 202 386 187 357 8.53e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375890 AT4G33440.1 67.086 477 150 3 1 475 1 472 0.0 661
Msa1375890 AT4G23820.1 52.500 440 199 6 40 475 7 440 1.93e-155 449
Msa1375890 AT3G62110.1 54.453 393 176 2 77 466 44 436 9.68e-152 441
Msa1375890 AT3G62110.2 54.453 393 176 2 77 466 44 436 9.68e-152 441
Msa1375890 AT5G41870.1 51.522 427 202 4 41 466 13 435 8.01e-151 437
Msa1375890 AT3G61490.5 44.170 446 246 2 23 466 8 452 4.30e-136 401
Msa1375890 AT3G61490.2 47.704 392 203 1 77 466 46 437 5.13e-136 400
Msa1375890 AT3G61490.3 47.704 392 203 1 77 466 46 437 5.13e-136 400
Msa1375890 AT3G61490.1 47.704 392 203 1 77 466 46 437 5.13e-136 400
Msa1375890 AT3G61490.4 47.704 392 203 1 77 466 159 550 2.22e-135 403
Msa1375890 AT4G23500.1 48.387 403 206 1 66 466 58 460 2.55e-133 394
Msa1375890 AT3G48950.1 46.782 404 212 2 66 466 35 438 3.31e-132 390
Msa1375890 AT3G42950.1 45.865 399 211 5 72 466 62 459 2.20e-125 374
Msa1375890 AT2G23900.1 44.472 407 223 2 72 475 52 458 2.25e-124 371
Msa1375890 AT1G19170.1 47.631 401 196 7 72 463 83 478 2.43e-123 369
Msa1375890 AT3G16850.1 46.212 396 212 1 71 466 35 429 8.37e-123 366
Msa1375890 AT3G06770.5 45.316 395 215 1 77 470 45 439 1.80e-120 360
Msa1375890 AT3G06770.2 45.316 395 215 1 77 470 44 438 2.09e-120 360
Msa1375890 AT5G49215.1 45.153 392 212 1 78 466 45 436 2.30e-118 355
Msa1375890 AT5G49215.2 45.153 392 212 1 78 466 43 434 2.33e-118 354
Msa1375890 AT3G06770.1 43.869 367 205 1 105 470 3 369 2.05e-106 322
Msa1375890 AT3G06770.3 43.869 367 205 1 105 470 3 369 2.05e-106 322
Msa1375890 AT3G06770.4 41.088 331 194 1 141 470 21 351 6.25e-87 271
Msa1375890 AT3G57790.2 27.013 385 218 11 68 437 27 363 1.69e-24 106
Msa1375890 AT3G57790.1 27.013 385 218 11 68 437 27 363 1.69e-24 106
Msa1375890 AT3G15720.3 28.280 343 185 12 65 390 12 310 3.50e-24 105
Msa1375890 AT3G15720.1 28.280 343 185 12 65 390 13 311 3.70e-24 105
Msa1375890 AT2G41850.1 27.441 379 218 14 77 442 69 403 3.89e-24 104
Msa1375890 AT3G15720.2 27.224 371 204 14 65 418 12 333 1.84e-23 103
Msa1375890 AT1G56710.1 27.126 435 257 17 24 442 7 397 5.01e-23 101
Msa1375890 AT3G57510.1 25.067 375 236 11 77 439 69 410 6.11e-23 101
Msa1375890 AT1G70500.1 25.275 455 284 15 25 458 9 428 5.14e-22 99.0
Msa1375890 AT3G26610.1 27.711 332 187 11 59 378 60 350 4.41e-21 96.3
Msa1375890 AT3G15720.4 32.287 223 117 8 179 390 48 247 7.87e-21 94.7
Msa1375890 AT5G17200.1 25.460 326 212 6 77 402 40 334 6.82e-20 92.0
Msa1375890 AT1G02460.1 27.726 321 188 10 75 378 88 381 1.64e-19 91.7
Msa1375890 AT5G14650.1 27.184 309 184 8 78 378 53 328 1.87e-19 90.9
Msa1375890 AT1G10640.1 24.716 352 187 12 77 387 120 434 1.93e-19 91.7
Msa1375890 AT1G60590.1 23.513 353 193 10 77 387 124 441 2.69e-19 91.3
Msa1375890 AT5G27530.1 27.134 328 172 11 75 386 52 328 3.84e-19 90.1
Msa1375890 AT1G80170.1 25.000 412 256 13 70 463 47 423 3.11e-18 87.4
Msa1375890 AT4G35670.2 31.401 207 115 6 179 378 8 194 7.46e-18 84.3
Msa1375890 AT4G35670.1 31.401 207 115 6 179 378 115 301 9.69e-18 85.5
Msa1375890 AT1G80140.1 29.412 306 164 12 179 463 61 335 1.49e-17 84.3
Msa1375890 AT4G01890.1 27.692 325 189 11 72 378 61 357 1.55e-17 85.5
Msa1375890 AT1G23460.2 25.342 292 190 7 179 459 131 405 2.75e-17 84.3
Msa1375890 AT1G23460.1 25.342 292 190 7 179 459 155 429 2.99e-17 84.3
Msa1375890 AT2G43870.1 27.778 288 184 8 184 463 112 383 8.64e-17 82.4
Msa1375890 AT2G43860.1 29.139 302 172 11 179 463 121 397 5.14e-16 80.1
Msa1375890 AT4G32380.1 30.093 216 123 6 179 387 118 312 7.48e-16 80.1
Msa1375890 AT1G65570.1 27.090 299 186 10 177 463 118 396 1.53e-15 79.0
Msa1375890 AT5G14650.2 26.056 284 169 8 78 353 53 303 2.73e-15 77.0
Msa1375890 AT1G48100.1 25.552 317 181 10 78 374 82 363 4.65e-15 77.8
Msa1375890 AT3G07970.1 25.092 271 173 6 179 442 158 405 6.03e-15 77.4
Msa1375890 AT2G26620.1 26.024 415 223 19 82 463 37 400 9.23e-15 76.3
Msa1375890 AT3G59850.1 27.437 277 178 7 189 457 119 380 1.76e-14 75.5
Msa1375890 AT3G59850.2 27.437 277 178 7 189 457 163 424 1.88e-14 75.5
Msa1375890 AT4G32375.1 29.808 208 116 7 179 378 19 204 1.91e-14 75.5
Msa1375890 AT2G43880.1 27.465 284 182 8 189 463 125 393 5.42e-14 73.9
Msa1375890 AT2G43890.1 25.307 407 239 16 77 463 30 391 7.35e-14 73.6
Msa1375890 AT5G44840.1 26.300 327 190 14 65 378 13 301 1.28e-13 72.8
Msa1375890 AT1G78400.1 25.490 408 248 13 72 462 32 400 2.26e-13 72.0
Msa1375890 AT1G05650.1 25.316 316 187 9 74 378 26 303 2.87e-13 71.6
Msa1375890 AT2G15470.1 25.404 433 243 20 65 463 16 402 3.27e-13 71.6
Msa1375890 AT2G15450.1 24.884 430 249 19 65 463 16 402 3.32e-13 71.6
Msa1375890 AT2G15460.1 24.651 430 244 19 65 460 16 399 9.75e-13 70.1
Msa1375890 AT1G02790.1 25.000 360 200 12 75 415 51 359 1.11e-12 70.1
Msa1375890 AT1G80170.2 25.914 301 168 12 70 353 47 309 1.23e-12 69.3
Msa1375890 AT4G32380.2 31.319 182 97 6 179 353 118 278 1.40e-12 69.7
Msa1375890 AT1G43090.1 24.190 401 257 12 72 457 27 395 3.04e-12 68.9
Msa1375890 AT1G43100.1 24.697 413 240 16 72 457 27 395 3.38e-12 68.6
Msa1375890 AT4G32370.1 26.481 287 186 7 99 378 48 316 4.13e-12 67.8
Msa1375890 AT4G13760.1 24.819 415 230 17 82 463 37 402 4.67e-12 68.2
Msa1375890 AT2G43880.2 30.769 195 117 4 189 378 125 306 5.61e-12 67.4
Msa1375890 AT1G43080.1 24.623 398 251 13 72 453 27 391 6.73e-12 67.8
Msa1375890 AT5G44830.1 28.283 198 104 7 189 378 75 242 1.89e-11 65.9
Msa1375890 AT5G39910.1 24.759 311 183 10 75 377 35 302 2.46e-11 65.9
Msa1375890 AT1G05660.1 25.175 286 187 9 189 463 122 391 2.82e-11 65.5

Find 92 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAATGGAACTTGGCTTAC+TGG 0.203693 tig0019771:-2071 Msa1375890:CDS
GGGTCTATGCCATCAGTATT+TGG 0.237146 tig0019771:+787 Msa1375890:intergenic
GATGGTAATGGTTCAATAAT+AGG 0.258711 tig0019771:+1514 Msa1375890:intergenic
GGTCTATGCCATCAGTATTT+GGG 0.263899 tig0019771:+788 Msa1375890:intergenic
ATTGAACCATTACCATCTTA+TGG 0.274641 tig0019771:-1508 Msa1375890:CDS
GGACCCCATTTGCATGTATA+AGG 0.299795 tig0019771:+1449 Msa1375890:intergenic
TCTGAAACGATTGGGTGTTC+AGG 0.308425 tig0019771:+2150 Msa1375890:intergenic
GTCCGTAATGTTGTCATTAC+AGG 0.343278 tig0019771:-1430 Msa1375890:intron
ATCAAGTCGATCGTTGATTT+CGG 0.368167 tig0019771:-2194 Msa1375890:CDS
CTGAAACGATTGGGTGTTCA+GGG 0.380129 tig0019771:+2151 Msa1375890:intergenic
TGGAAAGAGGGAAGAGAGAG+CGG 0.398751 tig0019771:+2303 Msa1375890:intergenic
ATTAGCCTTATACATGCAAA+TGG 0.403281 tig0019771:-1454 Msa1375890:CDS
AGGGTTGTGGTTGTTGAGAG+AGG 0.430628 tig0019771:+2276 Msa1375890:intergenic
TGAATGAAATTTAATATTGA+AGG 0.432974 tig0019771:+2465 Msa1375890:intergenic
TCAGTATTTGGGGCATTAAG+AGG 0.435613 tig0019771:+799 Msa1375890:intergenic
ACAGGATGGATAGTCCAAAA+AGG 0.436766 tig0019771:+1023 Msa1375890:intergenic
AGGACAAACCTGCAGTAAAC+AGG 0.436828 tig0019771:+1005 Msa1375890:intergenic
TACCTGTAATGACAACATTA+CGG 0.437132 tig0019771:+1428 Msa1375890:intergenic
TTCCATTGGGAATATTAAGC+TGG 0.439113 tig0019771:+2084 Msa1375890:intergenic
CTATCCATCCTGTTTACTGC+AGG 0.445563 tig0019771:-1013 Msa1375890:intron
GGAGGATGTGGTGGGAACTT+TGG 0.446844 tig0019771:-1139 Msa1375890:CDS
ATCGTTGATTTCGGCGGAGT+TGG 0.448014 tig0019771:-2185 Msa1375890:CDS
GAGAGAGGAGGATGGAAAGA+GGG 0.454413 tig0019771:+2291 Msa1375890:intergenic
TTAATATTCCCAATGGAACT+TGG 0.457528 tig0019771:-2079 Msa1375890:CDS
ACCAGTAAGCCAAGTTCCAT+TGG 0.460343 tig0019771:+2070 Msa1375890:intergenic
CCCCTTCCATAAGATGGTAA+TGG 0.461775 tig0019771:+1502 Msa1375890:intergenic
TGAGAGAGGAGGATGGAAAG+AGG 0.463917 tig0019771:+2290 Msa1375890:intergenic
TTTAATATTGAAGGTGGTGG+TGG 0.464251 tig0019771:+2474 Msa1375890:intergenic
AAAACAACGCTTATGATCCT+TGG 0.465905 tig0019771:-2404 Msa1375890:CDS
GTCGATCCCTCCACCTGCTC+CGG 0.466094 tig0019771:-2248 Msa1375890:CDS
GAAGAAACCGGAGCAGGTGG+AGG 0.468362 tig0019771:+2241 Msa1375890:intergenic
TTTCTGAGTTCATGAGTTCA+AGG 0.470137 tig0019771:+1081 Msa1375890:intergenic
AGGGGAAGAGAGAGGTTAGG+AGG 0.472332 tig0019771:-1484 Msa1375890:CDS
GGAAAGAGGGAAGAGAGAGC+GGG 0.477002 tig0019771:+2304 Msa1375890:intergenic
GAGAGCGGGTGGAAAATTGA+AGG 0.478091 tig0019771:+2318 Msa1375890:intergenic
TTAGCCTTATACATGCAAAT+GGG 0.479452 tig0019771:-1453 Msa1375890:CDS
ATGGTCAAGGGAGGATGTGG+TGG 0.481966 tig0019771:-1148 Msa1375890:CDS
GGAAGGGGAAGAGAGAGGTT+AGG 0.486356 tig0019771:-1487 Msa1375890:CDS
AGGAACGTGGTGGAAGAAAC+CGG 0.488190 tig0019771:+2229 Msa1375890:intergenic
ATTGAAGGTGGTGGTGGCGA+AGG 0.489129 tig0019771:+2480 Msa1375890:intergenic
GATCAAAGGGATGACAATCT+TGG 0.490016 tig0019771:-824 Msa1375890:CDS
AAGGGAAAGGACGGTGAGGA+AGG 0.492412 tig0019771:+2337 Msa1375890:intergenic
TGGATGGTCAAGGGAGGATG+TGG 0.505301 tig0019771:-1151 Msa1375890:CDS
TCTCTTCCCCTTCCATAAGA+TGG 0.508650 tig0019771:+1496 Msa1375890:intergenic
TTCAGTAATGTCGTGATCAA+AGG 0.510450 tig0019771:-838 Msa1375890:intron
AATCGCTCTCTGAAACGATT+GGG 0.513492 tig0019771:+2142 Msa1375890:intergenic
TCAGTAATGTCGTGATCAAA+GGG 0.515240 tig0019771:-837 Msa1375890:intron
GGATCGACGAGGGAGGGTTG+TGG 0.515588 tig0019771:+2263 Msa1375890:intergenic
GAATCGCTCTCTGAAACGAT+TGG 0.524375 tig0019771:+2141 Msa1375890:intergenic
CCAGTAAGCCAAGTTCCATT+GGG 0.525762 tig0019771:+2071 Msa1375890:intergenic
AACCATTACCATCTTATGGA+AGG 0.530877 tig0019771:-1504 Msa1375890:CDS
AAGAGGGAAGAGAGAGCGGG+TGG 0.540722 tig0019771:+2307 Msa1375890:intergenic
GGAGAAAATGGGACAGTGGA+TGG 0.540856 tig0019771:-1167 Msa1375890:CDS
GATTTCGGCGGAGTTGGCGA+TGG 0.541242 tig0019771:-2179 Msa1375890:CDS
GGATGTGGTGGGAACTTTGG+TGG 0.543291 tig0019771:-1136 Msa1375890:CDS
AAGGAGAATTTCTAAAAGTG+AGG 0.545139 tig0019771:+1042 Msa1375890:intergenic
AGAAACAAGATTGAGCATGA+TGG 0.549697 tig0019771:+2368 Msa1375890:intergenic
ACCATTACCATCTTATGGAA+GGG 0.550468 tig0019771:-1503 Msa1375890:CDS
GGAAAATTGAAGGGAAAGGA+CGG 0.553406 tig0019771:+2328 Msa1375890:intergenic
GTCTATGCCATCAGTATTTG+GGG 0.556587 tig0019771:+789 Msa1375890:intergenic
CCATTACCATCTTATGGAAG+GGG 0.557249 tig0019771:-1502 Msa1375890:CDS
AGAGCGGGTGGAAAATTGAA+GGG 0.561840 tig0019771:+2319 Msa1375890:intergenic
TCCATTGGGAATATTAAGCT+GGG 0.563379 tig0019771:+2085 Msa1375890:intergenic
GTGGAAGAAACCGGAGCAGG+TGG 0.570754 tig0019771:+2238 Msa1375890:intergenic
ATGGGACAGTGGATGGTCAA+GGG 0.572603 tig0019771:-1160 Msa1375890:CDS
GGTGGAGGGATCGACGAGGG+AGG 0.572777 tig0019771:+2256 Msa1375890:intergenic
AAATTTAATATTGAAGGTGG+TGG 0.574367 tig0019771:+2471 Msa1375890:intergenic
TCCCAGCTTAATATTCCCAA+TGG 0.579499 tig0019771:-2086 Msa1375890:CDS
CTTAATGCCCCAAATACTGA+TGG 0.580516 tig0019771:-796 Msa1375890:CDS
AATGGGACAGTGGATGGTCA+AGG 0.582086 tig0019771:-1161 Msa1375890:CDS
GGTGGCGAAGGAGAAGAAGA+TGG 0.583178 tig0019771:+2492 Msa1375890:intergenic
GTTGTGGTTGTTGAGAGAGG+AGG 0.589931 tig0019771:+2279 Msa1375890:intergenic
TGGTTGTTGAGAGAGGAGGA+TGG 0.593097 tig0019771:+2283 Msa1375890:intergenic
GTGGAGGGATCGACGAGGGA+GGG 0.593640 tig0019771:+2257 Msa1375890:intergenic
ATGAAATTTAATATTGAAGG+TGG 0.597526 tig0019771:+2468 Msa1375890:intergenic
TGTAGGAGAAAATGGGACAG+TGG 0.599461 tig0019771:-1171 Msa1375890:intron
TTGATGTAACAGAATAACAA+TGG 0.606343 tig0019771:-2435 Msa1375890:exon
GCAGGTGGAGGGATCGACGA+GGG 0.614217 tig0019771:+2253 Msa1375890:intergenic
TGGTCAAGGGAGGATGTGGT+GGG 0.615400 tig0019771:-1147 Msa1375890:CDS
GGGTGGAAAATTGAAGGGAA+AGG 0.619651 tig0019771:+2324 Msa1375890:intergenic
ACTTTGGTGGAATAGAACAT+TGG 0.620201 tig0019771:-1123 Msa1375890:CDS
AGAACATTGGTGCACACAAG+AGG 0.623050 tig0019771:-1110 Msa1375890:CDS
AAGAAACCGGAGCAGGTGGA+GGG 0.624750 tig0019771:+2242 Msa1375890:intergenic
GTGGTGGAAGAAACCGGAGC+AGG 0.627718 tig0019771:+2235 Msa1375890:intergenic
CAAACCTGCAGTAAACAGGA+TGG 0.630227 tig0019771:+1009 Msa1375890:intergenic
AATACTGATGGCATAGACCC+AGG 0.631728 tig0019771:-784 Msa1375890:intron
AGCAGGTGGAGGGATCGACG+AGG 0.641247 tig0019771:+2252 Msa1375890:intergenic
TAGCCTTATACATGCAAATG+GGG 0.642878 tig0019771:-1452 Msa1375890:CDS
AAGTCGATCGTTGATTTCGG+CGG 0.647417 tig0019771:-2191 Msa1375890:CDS
GGACAGTGGATGGTCAAGGG+AGG 0.650223 tig0019771:-1157 Msa1375890:CDS
ATTGAAGGGAAAGGACGGTG+AGG 0.666255 tig0019771:+2333 Msa1375890:intergenic
CTTATGGAAGGGGAAGAGAG+AGG 0.704274 tig0019771:-1492 Msa1375890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATATCTTTAAATCT+AGG + tig0019771:2283-2302 Msa1375890:intergenic 10.0%
!! TGAATGAAATTTAATATTGA+AGG + tig0019771:53-72 Msa0001640:intergenic 15.0%
!! ATAGAAATAAAATAAAATGG+TGG + tig0019771:540-559 Msa1375890:intergenic 15.0%
!!! ACAACAAATTTAATTTAATG+AGG + tig0019771:765-784 Msa1375890:intergenic 15.0%
!! AACAAAAAAAACTAAATAAG+TGG + tig0019771:1228-1247 Msa1375890:intergenic 15.0%
!! ATGAAATTTAATATTGAAGG+TGG + tig0019771:50-69 Msa0001640:intergenic 20.0%
!! TGTATCTTTATTAAGAAAAG+TGG - tig0019771:791-810 Msa1375890:CDS 20.0%
!! AAAGTTAAACAAACATGATT+TGG + tig0019771:884-903 Msa1375890:intergenic 20.0%
!!! TGTTTGTTTAACTTTGTTTT+TGG - tig0019771:889-908 Msa1375890:intron 20.0%
!!! TTATTAATTCCACATTTTAC+AGG - tig0019771:964-983 Msa1375890:intron 20.0%
!! AAAAAAACTAAATAAGTGGT+TGG + tig0019771:1224-1243 Msa1375890:intergenic 20.0%
!!! TTTTATTTTGTAGGAGAAAA+TGG - tig0019771:1336-1355 Msa1375890:intron 20.0%
!!! TTTATTTTGTAGGAGAAAAT+GGG - tig0019771:1337-1356 Msa1375890:intron 20.0%
!! TTATTAAACCTCAAAGTTTA+TGG + tig0019771:1642-1661 Msa1375890:intergenic 20.0%
! AAATTTAATATTGAAGGTGG+TGG + tig0019771:47-66 Msa0001640:intergenic 25.0%
! TTGATGTAACAGAATAACAA+TGG - tig0019771:80-99 Msa1375890:CDS 25.0%
! TTGACTTCTTTAATTATGCA+TGG - tig0019771:827-846 Msa1375890:CDS 25.0%
!!! TTAAACAAACATGATTTGGT+TGG + tig0019771:880-899 Msa1375890:intergenic 25.0%
!! GTTGCTAATTACTATACTTT+TGG - tig0019771:911-930 Msa1375890:intron 25.0%
!! TTTTACAGGACATTAAAGAA+TGG - tig0019771:978-997 Msa1375890:intron 25.0%
! AAATGCATATGAGCAATATT+TGG + tig0019771:1311-1330 Msa1375890:intergenic 25.0%
!!! CTTTTAGAAATTCTCCTTTT+TGG - tig0019771:1478-1497 Msa1375890:CDS 25.0%
! TTGTAATTCCATAAACTTTG+AGG - tig0019771:1631-1650 Msa1375890:intron 25.0%
! AACAAACGCAATAAATAAAG+AGG + tig0019771:1778-1797 Msa1375890:intergenic 25.0%
! AAGATAACTACATAGAAAGT+GGG - tig0019771:1915-1934 Msa1375890:intron 25.0%
!!! ATAAAATCTGATAATGGTAG+AGG - tig0019771:2139-2158 Msa1375890:CDS 25.0%
! GAGTATAAGCAATATAAGAA+TGG - tig0019771:2180-2199 Msa1375890:CDS 25.0%
!!! AGATATTTTAATCAGCAATG+TGG - tig0019771:2291-2310 Msa1375890:CDS 25.0%
! TTCAAGAATATTACTCTTCT+TGG - tig0019771:2382-2401 Msa1375890:CDS 25.0%
!!! ATCGACTTGATAACTTTTCT+GGG + tig0019771:312-331 Msa1375890:intergenic 30.0%
TTAATATTCCCAATGGAACT+TGG - tig0019771:436-455 Msa1375890:CDS 30.0%
TTGATCATTACTGTCTTTAG+TGG - tig0019771:680-699 Msa1375890:intron 30.0%
CTTTAATGTCCTGTAAAATG+TGG + tig0019771:976-995 Msa1375890:intergenic 30.0%
!! GATGGTAATGGTTCAATAAT+AGG + tig0019771:1004-1023 Msa1375890:intergenic 30.0%
ATTGAACCATTACCATCTTA+TGG - tig0019771:1007-1026 Msa1375890:intron 30.0%
!! ATTAGCCTTATACATGCAAA+TGG - tig0019771:1061-1080 Msa1375890:CDS 30.0%
!! TTAGCCTTATACATGCAAAT+GGG - tig0019771:1062-1081 Msa1375890:CDS 30.0%
TACCTGTAATGACAACATTA+CGG + tig0019771:1090-1109 Msa1375890:intergenic 30.0%
CTAATGGAATTGCAATTAAG+TGG + tig0019771:1135-1154 Msa1375890:intergenic 30.0%
TTGTCTAATTGCAGTACTAA+TGG + tig0019771:1151-1170 Msa1375890:intergenic 30.0%
!! TAGTGAATGACTACTTTTCA+AGG - tig0019771:1192-1211 Msa1375890:intron 30.0%
!! AGTGAATGACTACTTTTCAA+GGG - tig0019771:1193-1212 Msa1375890:intron 30.0%
ATTTGGACTATATACTGTAC+AGG + tig0019771:1294-1313 Msa1375890:intergenic 30.0%
! AAGGAGAATTTCTAAAAGTG+AGG + tig0019771:1476-1495 Msa1375890:intergenic 30.0%
TATCAAGAATGTGCAGTAAA+AGG + tig0019771:1533-1552 Msa1375890:intergenic 30.0%
GTTATCTTCAATACACACAT+TGG + tig0019771:1903-1922 Msa1375890:intergenic 30.0%
GAAGATAACTACATAGAAAG+TGG - tig0019771:1914-1933 Msa1375890:intron 30.0%
AGATAACTACATAGAAAGTG+GGG - tig0019771:1916-1935 Msa1375890:intron 30.0%
CTTACTATGATATTTGTGCT+AGG + tig0019771:1998-2017 Msa1375890:intergenic 30.0%
CTAGCACAAATATCATAGTA+AGG - tig0019771:1996-2015 Msa1375890:intron 30.0%
GTTCGCATAAAATCTGATAA+TGG - tig0019771:2133-2152 Msa1375890:CDS 30.0%
ATACCAATTAGGTTTAGTAG+AGG - tig0019771:2214-2233 Msa1375890:CDS 30.0%
! TTAAATCTAGGAACAGCTTT+TGG + tig0019771:2271-2290 Msa1375890:intergenic 30.0%
! TTTAATATTGAAGGTGGTGG+TGG + tig0019771:44-63 Msa0001640:intergenic 35.0%
AAAACAACGCTTATGATCCT+TGG - tig0019771:111-130 Msa1375890:CDS 35.0%
!!! ATGGTTTTGTGTATGATCCA+AGG + tig0019771:131-150 Msa1375890:intergenic 35.0%
AGAAACAAGATTGAGCATGA+TGG + tig0019771:150-169 Msa1375890:intergenic 35.0%
!!! GATCGACTTGATAACTTTTC+TGG + tig0019771:313-332 Msa1375890:intergenic 35.0%
!! ATCAAGTCGATCGTTGATTT+CGG - tig0019771:321-340 Msa1375890:CDS 35.0%
TCCATTGGGAATATTAAGCT+GGG + tig0019771:433-452 Msa1375890:intergenic 35.0%
TTCCATTGGGAATATTAAGC+TGG + tig0019771:434-453 Msa1375890:intergenic 35.0%
! AAGAAAAAGCGTGAAATCAC+TGG + tig0019771:484-503 Msa1375890:intergenic 35.0%
!!! TTCACGCTTTTTCTTCATCA+TGG - tig0019771:489-508 Msa1375890:CDS 35.0%
!! CAAACATGATTTGGTTGGTT+TGG + tig0019771:875-894 Msa1375890:intergenic 35.0%
AACCATTACCATCTTATGGA+AGG - tig0019771:1011-1030 Msa1375890:intron 35.0%
ACCATTACCATCTTATGGAA+GGG - tig0019771:1012-1031 Msa1375890:intron 35.0%
!! TAGCCTTATACATGCAAATG+GGG - tig0019771:1063-1082 Msa1375890:CDS 35.0%
ACTTTGGTGGAATAGAACAT+TGG - tig0019771:1392-1411 Msa1375890:intron 35.0%
TTTCTGAGTTCATGAGTTCA+AGG + tig0019771:1437-1456 Msa1375890:intergenic 35.0%
CCTCGATAAATTCAACTTGA+AGG + tig0019771:1563-1582 Msa1375890:intergenic 35.0%
!! CCTTCAAGTTGAATTTATCG+AGG - tig0019771:1560-1579 Msa1375890:intron 35.0%
TTCAGTAATGTCGTGATCAA+AGG - tig0019771:1677-1696 Msa1375890:intron 35.0%
TCAGTAATGTCGTGATCAAA+GGG - tig0019771:1678-1697 Msa1375890:intron 35.0%
TAAGTGCAAAGTACAAACCT+GGG + tig0019771:1751-1770 Msa1375890:intergenic 35.0%
ATAAGTGCAAAGTACAAACC+TGG + tig0019771:1752-1771 Msa1375890:intergenic 35.0%
AAAAGTGGTTGGGATCAATA+TGG - tig0019771:1956-1975 Msa1375890:intron 35.0%
ATCATAGTAAGGAGAGTTTC+AGG - tig0019771:2007-2026 Msa1375890:CDS 35.0%
!! AAATCTGATAATGGTAGAGG+CGG - tig0019771:2142-2161 Msa1375890:CDS 35.0%
AGAGAGTGAAGATACCAATT+AGG - tig0019771:2203-2222 Msa1375890:CDS 35.0%
GAACCTCTACTAAACCTAAT+TGG + tig0019771:2220-2239 Msa1375890:intergenic 35.0%
! TTCAACAAAAGCTCCAGTTT+TGG - tig0019771:2324-2343 Msa1375890:CDS 35.0%
GGAAAATTGAAGGGAAAGGA+CGG + tig0019771:190-209 Msa1375890:intergenic 40.0%
!! GACTTGATAACTTTTCTGGG+AGG + tig0019771:309-328 Msa1375890:intergenic 40.0%
!! AATCGCTCTCTGAAACGATT+GGG + tig0019771:376-395 Msa1375890:intergenic 40.0%
! CGTTACATGCAACGTTTTCA+AGG - tig0019771:396-415 Msa1375890:CDS 40.0%
!! ATGCAACGTTTTCAAGGCAA+AGG - tig0019771:402-421 Msa1375890:CDS 40.0%
!! AACGTTTTCAAGGCAAAGGT+GGG - tig0019771:406-425 Msa1375890:CDS 40.0%
TCCCAGCTTAATATTCCCAA+TGG - tig0019771:429-448 Msa1375890:CDS 40.0%
!!! CATCATGGTGCTGTTCTTTT+AGG - tig0019771:504-523 Msa1375890:CDS 40.0%
!!! TGCTGTTCTTTTAGGTTCTC+AGG - tig0019771:512-531 Msa1375890:CDS 40.0%
!! CATGATTTGGTTGGTTTGGT+GGG + tig0019771:871-890 Msa1375890:intergenic 40.0%
!! ACATGATTTGGTTGGTTTGG+TGG + tig0019771:872-891 Msa1375890:intergenic 40.0%
CCATTACCATCTTATGGAAG+GGG - tig0019771:1013-1032 Msa1375890:intron 40.0%
GTCCGTAATGTTGTCATTAC+AGG - tig0019771:1085-1104 Msa1375890:CDS 40.0%
ACAGGATGGATAGTCCAAAA+AGG + tig0019771:1495-1514 Msa1375890:intergenic 40.0%
GATCAAAGGGATGACAATCT+TGG - tig0019771:1691-1710 Msa1375890:intron 40.0%
! TCAGTATTTGGGGCATTAAG+AGG + tig0019771:1719-1738 Msa1375890:intergenic 40.0%
CTTAATGCCCCAAATACTGA+TGG - tig0019771:1719-1738 Msa1375890:intron 40.0%
GTCTATGCCATCAGTATTTG+GGG + tig0019771:1729-1748 Msa1375890:intergenic 40.0%
GGTCTATGCCATCAGTATTT+GGG + tig0019771:1730-1749 Msa1375890:intergenic 40.0%
TCGAGTCTGAATCATGAGAA+AGG + tig0019771:1877-1896 Msa1375890:intergenic 40.0%
GATCTTGTAGCCATCAAAAG+TGG - tig0019771:1941-1960 Msa1375890:intron 40.0%
TTGTAGCCATCAAAAGTGGT+TGG - tig0019771:1945-1964 Msa1375890:intron 40.0%
TGTAGCCATCAAAAGTGGTT+GGG - tig0019771:1946-1965 Msa1375890:intron 40.0%
!! TTGATCCCAACCACTTTTGA+TGG + tig0019771:1954-1973 Msa1375890:intergenic 40.0%
CAATTGAGAATTTGCACGTG+TGG - tig0019771:2095-2114 Msa1375890:CDS 40.0%
!! AATCTGATAATGGTAGAGGC+GGG - tig0019771:2143-2162 Msa1375890:CDS 40.0%
TCAAACGATCATCCTGATGA+TGG - tig0019771:2238-2257 Msa1375890:CDS 40.0%
CAAACGATCATCCTGATGAT+GGG - tig0019771:2239-2258 Msa1375890:CDS 40.0%
!!! ACAAAAGCTCCAGTTTTGGA+AGG - tig0019771:2328-2347 Msa1375890:CDS 40.0%
!!! TCCAGTTTTGGAAGGTGTAA+AGG - tig0019771:2336-2355 Msa1375890:CDS 40.0%
!!! CCAGTTTTGGAAGGTGTAAA+GGG - tig0019771:2337-2356 Msa1375890:CDS 40.0%
GTAAAGGGTTCATCATTCGA+AGG - tig0019771:2352-2371 Msa1375890:CDS 40.0%
ACAATGCCATGTTGCAGATA+AGG + tig0019771:2413-2432 Msa1375890:intergenic 40.0%
TGGCATTGTGAATATGTTGC+TGG - tig0019771:2424-2443 Msa1375890:exon 40.0%
!! TATGTTGCTGGTTTCACCAA+TGG - tig0019771:2436-2455 Msa1375890:exon 40.0%
!! ATGTTGCTGGTTTCACCAAT+GGG - tig0019771:2437-2456 Msa1375890:exon 40.0%
GGGTGGAAAATTGAAGGGAA+AGG + tig0019771:194-213 Msa1375890:intergenic 45.0%
AGAGCGGGTGGAAAATTGAA+GGG + tig0019771:199-218 Msa1375890:intergenic 45.0%
!! TAACTTTTCTGGGAGGAACG+TGG + tig0019771:302-321 Msa1375890:intergenic 45.0%
!! AAGTCGATCGTTGATTTCGG+CGG - tig0019771:324-343 Msa1375890:CDS 45.0%
CTGAAACGATTGGGTGTTCA+GGG + tig0019771:367-386 Msa1375890:intergenic 45.0%
! TCTGAAACGATTGGGTGTTC+AGG + tig0019771:368-387 Msa1375890:intergenic 45.0%
!! GAATCGCTCTCTGAAACGAT+TGG + tig0019771:377-396 Msa1375890:intergenic 45.0%
!! CAACGTTTTCAAGGCAAAGG+TGG - tig0019771:405-424 Msa1375890:CDS 45.0%
CCAGTAAGCCAAGTTCCATT+GGG + tig0019771:447-466 Msa1375890:intergenic 45.0%
ACCAGTAAGCCAAGTTCCAT+TGG + tig0019771:448-467 Msa1375890:intergenic 45.0%
ACATGCAAAACCCAGATTGC+AGG + tig0019771:656-675 Msa1375890:intergenic 45.0%
TGCATGGTTGTGCAATCACA+TGG - tig0019771:843-862 Msa1375890:intron 45.0%
CCCCTTCCATAAGATGGTAA+TGG + tig0019771:1016-1035 Msa1375890:intergenic 45.0%
TCTCTTCCCCTTCCATAAGA+TGG + tig0019771:1022-1041 Msa1375890:intergenic 45.0%
GGACCCCATTTGCATGTATA+AGG + tig0019771:1069-1088 Msa1375890:intergenic 45.0%
TGTAGGAGAAAATGGGACAG+TGG - tig0019771:1344-1363 Msa1375890:intron 45.0%
AGAACATTGGTGCACACAAG+AGG - tig0019771:1405-1424 Msa1375890:intron 45.0%
CTATCCATCCTGTTTACTGC+AGG - tig0019771:1502-1521 Msa1375890:CDS 45.0%
CAAACCTGCAGTAAACAGGA+TGG + tig0019771:1509-1528 Msa1375890:intergenic 45.0%
AGGACAAACCTGCAGTAAAC+AGG + tig0019771:1513-1532 Msa1375890:intergenic 45.0%
GGGTCTATGCCATCAGTATT+TGG + tig0019771:1731-1750 Msa1375890:intergenic 45.0%
AATACTGATGGCATAGACCC+AGG - tig0019771:1731-1750 Msa1375890:intron 45.0%
ATTTGTGCTAGGCTTAGCCA+CGG + tig0019771:1987-2006 Msa1375890:intergenic 45.0%
TTCCTACTCCAGAGCAAGTT+GGG + tig0019771:2039-2058 Msa1375890:intergenic 45.0%
ATTCCTACTCCAGAGCAAGT+TGG + tig0019771:2040-2059 Msa1375890:intergenic 45.0%
!! ACTTGCTCTGGAGTAGGAAT+AGG - tig0019771:2040-2059 Msa1375890:CDS 45.0%
CCCTTTACACCTTCCAAAAC+TGG + tig0019771:2340-2359 Msa1375890:intergenic 45.0%
!! GTGTAGCCTTATCTGCAACA+TGG - tig0019771:2404-2423 Msa1375890:CDS 45.0%
!! TGTTGCTGGTTTCACCAATG+GGG - tig0019771:2438-2457 Msa1375890:exon 45.0%
TTGTTGTGCAACTCAGGACA+CGG + tig0019771:2475-2494 Msa1375890:intergenic 45.0%
TGTCCTGAGTTGCACAACAA+TGG - tig0019771:2475-2494 Msa1375890:five_prime_UTR 45.0%
ACAACAATGGCACTACATCC+TGG - tig0019771:2488-2507 Msa1375890:five_prime_UTR 45.0%
AAATCAGCAAGGTCAACACC+AGG + tig0019771:2509-2528 Msa1375890:intergenic 45.0%
!! AAAATAGAAATAAAATAAAA+TGG + tig0019771:543-562 Msa1375890:intergenic 5.0%
!! TAATATAATTAAAATTCAAA+AGG + tig0019771:568-587 Msa1375890:intergenic 5.0%
!! ATATAATTAATTAACTTATT+TGG - tig0019771:1252-1271 Msa1375890:intron 5.0%
!!! ATTTTATTATTTTATTTTGT+AGG - tig0019771:1327-1346 Msa1375890:intron 5.0%
ATTGAAGGGAAAGGACGGTG+AGG + tig0019771:185-204 Msa1375890:intergenic 50.0%
GAGAGCGGGTGGAAAATTGA+AGG + tig0019771:200-219 Msa1375890:intergenic 50.0%
TGGAAAGAGGGAAGAGAGAG+CGG + tig0019771:215-234 Msa1375890:intergenic 50.0%
GAGAGAGGAGGATGGAAAGA+GGG + tig0019771:227-246 Msa1375890:intergenic 50.0%
TGAGAGAGGAGGATGGAAAG+AGG + tig0019771:228-247 Msa1375890:intergenic 50.0%
TGGTTGTTGAGAGAGGAGGA+TGG + tig0019771:235-254 Msa1375890:intergenic 50.0%
GTTGTGGTTGTTGAGAGAGG+AGG + tig0019771:239-258 Msa1375890:intergenic 50.0%
AGGGTTGTGGTTGTTGAGAG+AGG + tig0019771:242-261 Msa1375890:intergenic 50.0%
! AGGAACGTGGTGGAAGAAAC+CGG + tig0019771:289-308 Msa1375890:intergenic 50.0%
!! ATCGTTGATTTCGGCGGAGT+TGG - tig0019771:330-349 Msa1375890:CDS 50.0%
CCCAATGGAACTTGGCTTAC+TGG - tig0019771:444-463 Msa1375890:CDS 50.0%
TAGACTTTCCGCCTGCAATC+TGG - tig0019771:642-661 Msa1375890:intron 50.0%
AGACTTTCCGCCTGCAATCT+GGG - tig0019771:643-662 Msa1375890:intron 50.0%
TGCAAAACCCAGATTGCAGG+CGG + tig0019771:653-672 Msa1375890:intergenic 50.0%
CTTATGGAAGGGGAAGAGAG+AGG - tig0019771:1023-1042 Msa1375890:CDS 50.0%
GGAGAAAATGGGACAGTGGA+TGG - tig0019771:1348-1367 Msa1375890:intron 50.0%
AATGGGACAGTGGATGGTCA+AGG - tig0019771:1354-1373 Msa1375890:intron 50.0%
ATGGGACAGTGGATGGTCAA+GGG - tig0019771:1355-1374 Msa1375890:intron 50.0%
GGATCAATATGGAATCGCCG+TGG - tig0019771:1967-1986 Msa1375890:intron 50.0%
TCCTACTCCAGAGCAAGTTG+GGG + tig0019771:2038-2057 Msa1375890:intergenic 50.0%
GGAATAGGCAGTGAGATGTC+TGG - tig0019771:2055-2074 Msa1375890:CDS 50.0%
ATAGGCAGTGAGATGTCTGG+TGG - tig0019771:2058-2077 Msa1375890:CDS 50.0%
!! ACGATCATCCTGATGATGGG+TGG - tig0019771:2242-2261 Msa1375890:CDS 50.0%
!! CGATCATCCTGATGATGGGT+GGG - tig0019771:2243-2262 Msa1375890:CDS 50.0%
TTTGGATCCCACCCATCATC+AGG + tig0019771:2253-2272 Msa1375890:intergenic 50.0%
! GTGCCATTGTTGTGCAACTC+AGG + tig0019771:2481-2500 Msa1375890:intergenic 50.0%
GGTGGCGAAGGAGAAGAAGA+TGG + tig0019771:26-45 Msa0001640:intergenic 55.0%
!! ATTGAAGGTGGTGGTGGCGA+AGG + tig0019771:38-57 Msa0001640:intergenic 55.0%
AAGGGAAAGGACGGTGAGGA+AGG + tig0019771:181-200 Msa1375890:intergenic 55.0%
GGAAAGAGGGAAGAGAGAGC+GGG + tig0019771:214-233 Msa1375890:intergenic 55.0%
AAGAAACCGGAGCAGGTGGA+GGG + tig0019771:276-295 Msa1375890:intergenic 55.0%
!! CTTTTCTGGGAGGAACGTGG+TGG + tig0019771:299-318 Msa1375890:intergenic 55.0%
GGAAGGGGAAGAGAGAGGTT+AGG - tig0019771:1028-1047 Msa1375890:CDS 55.0%
AGGGGAAGAGAGAGGTTAGG+AGG - tig0019771:1031-1050 Msa1375890:CDS 55.0%
TGGATGGTCAAGGGAGGATG+TGG - tig0019771:1364-1383 Msa1375890:intron 55.0%
ATGGTCAAGGGAGGATGTGG+TGG - tig0019771:1367-1386 Msa1375890:intron 55.0%
TGGTCAAGGGAGGATGTGGT+GGG - tig0019771:1368-1387 Msa1375890:intron 55.0%
! GGAGGATGTGGTGGGAACTT+TGG - tig0019771:1376-1395 Msa1375890:intron 55.0%
! GGATGTGGTGGGAACTTTGG+TGG - tig0019771:1379-1398 Msa1375890:intron 55.0%
! GGAACTACCCCAACTTGCTC+TGG - tig0019771:2028-2047 Msa1375890:CDS 55.0%
!! ACCCCAACTTGCTCTGGAGT+AGG - tig0019771:2034-2053 Msa1375890:CDS 55.0%
CACGTGTGGAATTCTGCAGC+AGG - tig0019771:2109-2128 Msa1375890:CDS 55.0%
TGCAACTCAGGACACGGAAC+GGG + tig0019771:2469-2488 Msa1375890:intergenic 55.0%
GTGCAACTCAGGACACGGAA+CGG + tig0019771:2470-2489 Msa1375890:intergenic 55.0%
AAGAGGGAAGAGAGAGCGGG+TGG + tig0019771:211-230 Msa1375890:intergenic 60.0%
GAAGAAACCGGAGCAGGTGG+AGG + tig0019771:277-296 Msa1375890:intergenic 60.0%
GTGGAAGAAACCGGAGCAGG+TGG + tig0019771:280-299 Msa1375890:intergenic 60.0%
! GTGGTGGAAGAAACCGGAGC+AGG + tig0019771:283-302 Msa1375890:intergenic 60.0%
GATTTCGGCGGAGTTGGCGA+TGG - tig0019771:336-355 Msa1375890:CDS 60.0%
GGACAGTGGATGGTCAAGGG+AGG - tig0019771:1358-1377 Msa1375890:intron 60.0%
GCAACTCAGGACACGGAACG+GGG + tig0019771:2468-2487 Msa1375890:intergenic 60.0%
GGATCGACGAGGGAGGGTTG+TGG + tig0019771:255-274 Msa1375890:intergenic 65.0%
GTGGAGGGATCGACGAGGGA+GGG + tig0019771:261-280 Msa1375890:intergenic 65.0%
GCAGGTGGAGGGATCGACGA+GGG + tig0019771:265-284 Msa1375890:intergenic 65.0%
AGCAGGTGGAGGGATCGACG+AGG + tig0019771:266-285 Msa1375890:intergenic 65.0%
GTCGATCCCTCCACCTGCTC+CGG - tig0019771:267-286 Msa1375890:CDS 65.0%
CGGAACGGGGAACACCCCAT+TGG + tig0019771:2455-2474 Msa1375890:intergenic 65.0%
GGTGGAGGGATCGACGAGGG+AGG + tig0019771:262-281 Msa1375890:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0019771 gene 1 2536 1 ID=Msa1375890;Name=Msa1375890
tig0019771 mRNA 1 2536 1 ID=Msa1375890-mRNA-1;Parent=Msa1375890;Name=Msa1375890-mRNA-1;_AED=0.14;_eAED=0.14;_QI=98|1|1|1|1|1|5|20|475
tig0019771 exon 1 646 1 ID=Msa1375890-mRNA-1:exon:4769;Parent=Msa1375890-mRNA-1
tig0019771 exon 785 855 785 ID=Msa1375890-mRNA-1:exon:4768;Parent=Msa1375890-mRNA-1
tig0019771 exon 1014 1188 1014 ID=Msa1375890-mRNA-1:exon:4767;Parent=Msa1375890-mRNA-1
tig0019771 exon 1431 1551 1431 ID=Msa1375890-mRNA-1:exon:4766;Parent=Msa1375890-mRNA-1
tig0019771 exon 2004 2536 2004 ID=Msa1375890-mRNA-1:exon:4765;Parent=Msa1375890-mRNA-1
tig0019771 five_prime_UTR 2439 2536 2439 ID=Msa1375890-mRNA-1:five_prime_utr;Parent=Msa1375890-mRNA-1
tig0019771 CDS 2004 2438 2004 ID=Msa1375890-mRNA-1:cds;Parent=Msa1375890-mRNA-1
tig0019771 CDS 1431 1551 1431 ID=Msa1375890-mRNA-1:cds;Parent=Msa1375890-mRNA-1
tig0019771 CDS 1014 1188 1014 ID=Msa1375890-mRNA-1:cds;Parent=Msa1375890-mRNA-1
tig0019771 CDS 785 855 785 ID=Msa1375890-mRNA-1:cds;Parent=Msa1375890-mRNA-1
tig0019771 CDS 21 646 21 ID=Msa1375890-mRNA-1:cds;Parent=Msa1375890-mRNA-1
tig0019771 three_prime_UTR 1 20 1 ID=Msa1375890-mRNA-1:three_prime_utr;Parent=Msa1375890-mRNA-1
Gene Sequence

>Msa1375890

ATGGAATCAGAGAAAACAACGCTTATGATCCTTGGATCATACACAAAACCATCATGCTCAATCTTGTTTCTCTTCTTCACCTTCCTCACCGTCCTTTCCCTTCAATTTTCCACCCGCTCTCTCTTCCCTCTTTCCATCCTCCTCTCTCAACAACCACAACCCTCCCTCGTCGATCCCTCCACCTGCTCCGGTTTCTTCCACCACGTTCCTCCCAGAAAAGTTATCAAGTCGATCGTTGATTTCGGCGGAGTTGGCGATGGCAAAACCCTGAACACCCAATCGTTTCAGAGAGCGATTCGTTACATGCAACGTTTTCAAGGCAAAGGTGGGTCCCAGCTTAATATTCCCAATGGAACTTGGCTTACTGGTAGTTTTAATCTCACCAGTGATTTCACGCTTTTTCTTCATCATGGTGCTGTTCTTTTAGGTTCTCAGGACATTAAAGAATGGCCTATTATTGAACCATTACCATCTTATGGAAGGGGAAGAGAGAGGTTAGGAGGAAGACATATTAGCCTTATACATGCAAATGGGGTCCGTAATGTTGTCATTACAGGAGAAAATGGGACAGTGGATGGTCAAGGGAGGATGTGGTGGGAACTTTGGTGGAATAGAACATTGGTGCACACAAGAGGACATCTCCTTGAACTCATGAACTCAGAAAATGTTCTTGTTTCAAACCTCACTTTTAGAAATTCTCCTTTTTGGACTATCCATCCTGTTTACTGCAGTAATGTCGTGATCAAAGGGATGACAATCTTGGCTCCTCTTAATGCCCCAAATACTGATGGCATAGACCCAGACTCGAGTACCAATGTGTGTATTGAAGATAACTACATAGAAAGTGGGGACGATCTTGTAGCCATCAAAAGTGGTTGGGATCAATATGGAATCGCCGTGGCTAAGCCTAGCACAAATATCATAGTAAGGAGAGTTTCAGGAACTACCCCAACTTGCTCTGGAGTAGGAATAGGCAGTGAGATGTCTGGTGGAATTTCAAATATTACAATTGAGAATTTGCACGTGTGGAATTCTGCAGCAGGTGTTCGCATAAAATCTGATAATGGTAGAGGCGGGTATGTAGCAAATGTGAGTATAAGCAATATAAGAATGGAGAGAGTGAAGATACCAATTAGGTTTAGTAGAGGTTCAAACGATCATCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTAGATTTAAAGATATTTTAATCAGCAATGTGGTCAGTGTAAATTCAACAAAAGCTCCAGTTTTGGAAGGTGTAAAGGGTTCATCATTCGAAGGCTTATGCTTCAAGAATATTACTCTTCTTGGTGTAGCCTTATCTGCAACATGGCATTGTGAATATGTTGCTGGTTTCACCAATGGGGTGTTCCCCGTTCCGTGTCCTGAGTTGCACAACAATGGCACTACATCCTGGTGTTGA

Protein sequence

>Msa1375890

MESEKTTLMILGSYTKPSCSILFLFFTFLTVLSLQFSTRSLFPLSILLSQQPQPSLVDPSTCSGFFHHVPPRKVIKSIVDFGGVGDGKTLNTQSFQRAIRYMQRFQGKGGSQLNIPNGTWLTGSFNLTSDFTLFLHHGAVLLGSQDIKEWPIIEPLPSYGRGRERLGGRHISLIHANGVRNVVITGENGTVDGQGRMWWELWWNRTLVHTRGHLLELMNSENVLVSNLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGIAVAKPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNITIENLHVWNSAAGVRIKSDNGRGGYVANVSISNIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDILISNVVSVNSTKAPVLEGVKGSSFEGLCFKNITLLGVALSATWHCEYVAGFTNGVFPVPCPELHNNGTTSWC*