Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451310 | sp|Q5NA18|MTP5_ORYSJ | 83.663 | 202 | 33 | 0 | 1 | 202 | 98 | 299 | 1.62e-113 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451310 | I3SR27 | 99.010 | 202 | 2 | 0 | 1 | 202 | 31 | 232 | 2.04e-143 | 411 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005500 | Msa1451310 | 0.827085 | 1.900339e-54 | -8.615850e-47 |
| Msa0011410 | Msa1451310 | 0.803185 | 3.933582e-49 | -8.615850e-47 |
| Msa0016830 | Msa1451310 | 0.807127 | 5.883449e-50 | -8.615850e-47 |
| Msa0030710 | Msa1451310 | 0.810276 | 1.249400e-50 | -8.615850e-47 |
| Msa0034800 | Msa1451310 | 0.804283 | 2.326738e-49 | -8.615850e-47 |
| Msa0049670 | Msa1451310 | 0.826572 | 2.521064e-54 | -8.615850e-47 |
| Msa0054110 | Msa1451310 | 0.848640 | 5.387379e-60 | -8.615850e-47 |
| Msa0056220 | Msa1451310 | 0.828245 | 1.000668e-54 | -8.615850e-47 |
| Msa0083200 | Msa1451310 | 0.835267 | 1.853696e-56 | -8.615850e-47 |
| Msa1355020 | Msa1451310 | 0.808830 | 2.553769e-50 | -8.615850e-47 |
| Msa1374210 | Msa1451310 | 0.829174 | 5.967510e-55 | -8.615850e-47 |
| Msa1389990 | Msa1451310 | 0.824390 | 8.284990e-54 | -8.615850e-47 |
| Msa1393600 | Msa1451310 | 0.834561 | 2.790724e-56 | -8.615850e-47 |
| Msa1394090 | Msa1451310 | 0.810601 | 1.063096e-50 | -8.615850e-47 |
| Msa1394280 | Msa1451310 | 0.818332 | 2.071859e-52 | -8.615850e-47 |
| Msa1409360 | Msa1451310 | 0.813743 | 2.193474e-51 | -8.615850e-47 |
| Msa1421490 | Msa1451310 | 0.800954 | 1.130863e-48 | -8.615850e-47 |
| Msa1422820 | Msa1451310 | 0.828368 | 9.345529e-55 | -8.615850e-47 |
| Msa1425630 | Msa1451310 | 0.822454 | 2.348168e-53 | -8.615850e-47 |
| Msa1434850 | Msa1451310 | 0.800505 | 1.396912e-48 | -8.615850e-47 |
| Msa1448410 | Msa1451310 | 0.804424 | 2.174758e-49 | -8.615850e-47 |
| Msa1451310 | Msa1454940 | 0.823744 | 1.174386e-53 | -8.615850e-47 |
| Msa0608280 | Msa1451310 | 0.803198 | 3.908358e-49 | -8.615850e-47 |
| Msa0614060 | Msa1451310 | 0.807051 | 6.104652e-50 | -8.615850e-47 |
| Msa0617010 | Msa1451310 | 0.810894 | 9.187219e-51 | -8.615850e-47 |
| Msa0619480 | Msa1451310 | 0.829640 | 4.597519e-55 | -8.615850e-47 |
| Msa0622930 | Msa1451310 | 0.820504 | 6.625069e-53 | -8.615850e-47 |
| Msa0625550 | Msa1451310 | 0.825709 | 4.043612e-54 | -8.615850e-47 |
| Msa0635070 | Msa1451310 | 0.804504 | 2.092561e-49 | -8.615850e-47 |
| Msa0638550 | Msa1451310 | 0.805632 | 1.215313e-49 | -8.615850e-47 |
| Msa0654400 | Msa1451310 | 0.829307 | 5.537801e-55 | -8.615850e-47 |
| Msa0654500 | Msa1451310 | 0.818987 | 1.471139e-52 | -8.615850e-47 |
| Msa0656570 | Msa1451310 | 0.803357 | 3.622780e-49 | -8.615850e-47 |
| Msa0659640 | Msa1451310 | 0.809285 | 2.041152e-50 | -8.615850e-47 |
| Msa0691350 | Msa1451310 | 0.801070 | 1.070667e-48 | -8.615850e-47 |
| Msa0697230 | Msa1451310 | 0.806857 | 6.710637e-50 | -8.615850e-47 |
| Msa0700430 | Msa1451310 | 0.808441 | 3.092565e-50 | -8.615850e-47 |
| Msa0700870 | Msa1451310 | 0.821869 | 3.210530e-53 | -8.615850e-47 |
| Msa0700930 | Msa1451310 | 0.817399 | 3.364152e-52 | -8.615850e-47 |
| Msa0707870 | Msa1451310 | 0.850774 | 1.366249e-60 | -8.615850e-47 |
| Msa0736330 | Msa1451310 | 0.800229 | 1.589770e-48 | -8.615850e-47 |
| Msa0741600 | Msa1451310 | 0.806168 | 9.375360e-50 | -8.615850e-47 |
| Msa0742690 | Msa1451310 | 0.813212 | 2.868860e-51 | -8.615850e-47 |
| Msa0755500 | Msa1451310 | 0.813974 | 1.950136e-51 | -8.615850e-47 |
| Msa0756570 | Msa1451310 | -0.809203 | 2.124926e-50 | -8.615850e-47 |
| Msa0762390 | Msa1451310 | 0.833350 | 5.610300e-56 | -8.615850e-47 |
| Msa0762470 | Msa1451310 | 0.831480 | 1.630090e-55 | -8.615850e-47 |
| Msa0779830 | Msa1451310 | 0.810953 | 8.919508e-51 | -8.615850e-47 |
| Msa0822680 | Msa1451310 | 0.808340 | 3.249697e-50 | -8.615850e-47 |
| Msa0827560 | Msa1451310 | 0.817476 | 3.233700e-52 | -8.615850e-47 |
| Msa0834830 | Msa1451310 | 0.819318 | 1.236692e-52 | -8.615850e-47 |
| Msa0138380 | Msa1451310 | 0.834472 | 2.939397e-56 | -8.615850e-47 |
| Msa0146490 | Msa1451310 | 0.801715 | 7.900095e-49 | -8.615850e-47 |
| Msa0180540 | Msa1451310 | 0.821658 | 3.591623e-53 | -8.615850e-47 |
| Msa0183960 | Msa1451310 | 0.813168 | 2.933488e-51 | -8.615850e-47 |
| Msa0198140 | Msa1451310 | 0.814684 | 1.358924e-51 | -8.615850e-47 |
| Msa0198220 | Msa1451310 | 0.818282 | 2.125763e-52 | -8.615850e-47 |
| Msa0219720 | Msa1451310 | 0.815102 | 1.097757e-51 | -8.615850e-47 |
| Msa0228360 | Msa1451310 | 0.826501 | 2.620600e-54 | -8.615850e-47 |
| Msa1251890 | Msa1451310 | 0.804584 | 2.013442e-49 | -8.615850e-47 |
| Msa1251960 | Msa1451310 | 0.832456 | 9.357908e-56 | -8.615850e-47 |
| Msa1252040 | Msa1451310 | 0.802621 | 5.142285e-49 | -8.615850e-47 |
| Msa1264230 | Msa1451310 | 0.808021 | 3.799529e-50 | -8.615850e-47 |
| Msa1267800 | Msa1451310 | 0.803191 | 3.921533e-49 | -8.615850e-47 |
| Msa1279240 | Msa1451310 | 0.815613 | 8.449494e-52 | -8.615850e-47 |
| Msa1305970 | Msa1451310 | 0.810522 | 1.105384e-50 | -8.615850e-47 |
| Msa0372380 | Msa1451310 | 0.832327 | 1.007350e-55 | -8.615850e-47 |
| Msa0375930 | Msa1451310 | 0.838344 | 3.040538e-57 | -8.615850e-47 |
| Msa0377690 | Msa1451310 | 0.824191 | 9.226737e-54 | -8.615850e-47 |
| Msa0381370 | Msa1451310 | 0.836379 | 9.686212e-57 | -8.615850e-47 |
| Msa0422520 | Msa1451310 | 0.831825 | 1.340014e-55 | -8.615850e-47 |
| Msa0424570 | Msa1451310 | 0.840069 | 1.085806e-57 | -8.615850e-47 |
| Msa0426680 | Msa1451310 | 0.839036 | 2.014771e-57 | -8.615850e-47 |
| Msa0426990 | Msa1451310 | 0.814162 | 1.772796e-51 | -8.615850e-47 |
| Msa0443250 | Msa1451310 | 0.827146 | 1.838074e-54 | -8.615850e-47 |
| Msa0463820 | Msa1451310 | 0.804322 | 2.283848e-49 | -8.615850e-47 |
| Msa0469650 | Msa1451310 | 0.806012 | 1.011279e-49 | -8.615850e-47 |
| Msa0472870 | Msa1451310 | 0.807401 | 5.146472e-50 | -8.615850e-47 |
| Msa0481580 | Msa1451310 | 0.814087 | 1.842205e-51 | -8.615850e-47 |
| Msa0998940 | Msa1451310 | 0.810946 | 8.952232e-51 | -8.615850e-47 |
| Msa1011140 | Msa1451310 | 0.818707 | 1.702835e-52 | -8.615850e-47 |
| Msa1016450 | Msa1451310 | 0.808231 | 3.428279e-50 | -8.615850e-47 |
| Msa1020490 | Msa1451310 | 0.806793 | 6.922132e-50 | -8.615850e-47 |
| Msa1020500 | Msa1451310 | 0.825805 | 3.836121e-54 | -8.615850e-47 |
| Msa1057940 | Msa1451310 | 0.800902 | 1.159168e-48 | -8.615850e-47 |
| Msa1083660 | Msa1451310 | 0.801768 | 7.705602e-49 | -8.615850e-47 |
| Msa1086330 | Msa1451310 | 0.802328 | 5.910507e-49 | -8.615850e-47 |
| Msa1086630 | Msa1451310 | 0.800980 | 1.117347e-48 | -8.615850e-47 |
| Msa1086830 | Msa1451310 | 0.813139 | 2.977199e-51 | -8.615850e-47 |
| Msa1090020 | Msa1451310 | 0.805582 | 1.244981e-49 | -8.615850e-47 |
| Msa0240460 | Msa1451310 | 0.835300 | 1.818619e-56 | -8.615850e-47 |
| Msa0253510 | Msa1451310 | 0.823934 | 1.059964e-53 | -8.615850e-47 |
| Msa0273780 | Msa1451310 | 0.800184 | 1.623417e-48 | -8.615850e-47 |
| Msa0278340 | Msa1451310 | 0.815910 | 7.258074e-52 | -8.615850e-47 |
| Msa0298590 | Msa1451310 | 0.807334 | 5.318419e-50 | -8.615850e-47 |
| Msa0310260 | Msa1451310 | 0.801319 | 9.521858e-49 | -8.615850e-47 |
| Msa1140700 | Msa1451310 | 0.928004 | 5.319850e-92 | -8.615850e-47 |
| Msa1190320 | Msa1451310 | 0.816198 | 6.256300e-52 | -8.615850e-47 |
| Msa1197210 | Msa1451310 | 0.808937 | 2.422358e-50 | -8.615850e-47 |
| Msa1198280 | Msa1451310 | 0.801547 | 8.551041e-49 | -8.615850e-47 |
| Msa1199690 | Msa1451310 | 0.810576 | 1.076355e-50 | -8.615850e-47 |
| Msa1203090 | Msa1451310 | 0.823116 | 1.647338e-53 | -8.615850e-47 |
| Msa1215660 | Msa1451310 | 0.815959 | 7.074788e-52 | -8.615850e-47 |
| Msa1219530 | Msa1451310 | 0.813216 | 2.863386e-51 | -8.615850e-47 |
| Msa0483410 | Msa1451310 | 0.811336 | 7.367669e-51 | -8.615850e-47 |
| Msa0512770 | Msa1451310 | 0.813638 | 2.313458e-51 | -8.615850e-47 |
| Msa0516000 | Msa1451310 | 0.839771 | 1.297887e-57 | -8.615850e-47 |
| Msa0516340 | Msa1451310 | 0.814561 | 1.446806e-51 | -8.615850e-47 |
| Msa0558800 | Msa1451310 | 0.814240 | 1.703650e-51 | -8.615850e-47 |
| Msa0559440 | Msa1451310 | 0.824485 | 7.870304e-54 | -8.615850e-47 |
| Msa0559640 | Msa1451310 | 0.808217 | 3.451254e-50 | -8.615850e-47 |
| Msa0560010 | Msa1451310 | 0.805742 | 1.152412e-49 | -8.615850e-47 |
| Msa0564000 | Msa1451310 | 0.823144 | 1.622775e-53 | -8.615850e-47 |
| Msa0571220 | Msa1451310 | 0.817320 | 3.506287e-52 | -8.615850e-47 |
| Msa0574230 | Msa1451310 | 0.841981 | 3.416929e-58 | -8.615850e-47 |
| Msa0576510 | Msa1451310 | 0.846719 | 1.820689e-59 | -8.615850e-47 |
| Msa0577290 | Msa1451310 | 0.815123 | 1.086094e-51 | -8.615850e-47 |
| Msa0577920 | Msa1451310 | 0.806673 | 7.336929e-50 | -8.615850e-47 |
| Msa0577960 | Msa1451310 | 0.824608 | 7.360939e-54 | -8.615850e-47 |
| Msa0848780 | Msa1451310 | 0.804363 | 2.239171e-49 | -8.615850e-47 |
| Msa0862750 | Msa1451310 | 0.817755 | 2.796796e-52 | -8.615850e-47 |
| Msa0872800 | Msa1451310 | 0.834432 | 3.008232e-56 | -8.615850e-47 |
| Msa0878090 | Msa1451310 | 0.805935 | 1.049776e-49 | -8.615850e-47 |
| Msa0883880 | Msa1451310 | 0.822717 | 2.040652e-53 | -8.615850e-47 |
| Msa0894580 | Msa1451310 | 0.806337 | 8.638817e-50 | -8.615850e-47 |
| Msa0924820 | Msa1451310 | 0.806652 | 7.412451e-50 | -8.615850e-47 |
| Msa0933050 | Msa1451310 | 0.803801 | 2.930455e-49 | -8.615850e-47 |
| Msa0941320 | Msa1451310 | 0.805964 | 1.034953e-49 | -8.615850e-47 |
| Msa0946570 | Msa1451310 | 0.809914 | 1.495004e-50 | -8.615850e-47 |
| Msa0967260 | Msa1451310 | 0.803399 | 3.551804e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451310 | MtrunA17_Chr7g0222641 | 99.505 | 202 | 1 | 0 | 1 | 202 | 84 | 285 | 3.53e-146 | 413 |
| Msa1451310 | MtrunA17_Chr8g0357061 | 62.439 | 205 | 75 | 2 | 1 | 204 | 79 | 282 | 3.28e-79 | 242 |
| Msa1451310 | MtrunA17_Chr2g0310301 | 62.439 | 205 | 75 | 2 | 1 | 204 | 78 | 281 | 1.56e-77 | 238 |
| Msa1451310 | MtrunA17_Chr3g0119281 | 60.976 | 205 | 78 | 2 | 1 | 204 | 84 | 287 | 1.85e-73 | 228 |
| Msa1451310 | MtrunA17_Chr3g0108381 | 52.475 | 202 | 92 | 1 | 1 | 202 | 87 | 284 | 5.94e-68 | 214 |
| Msa1451310 | MtrunA17_Chr5g0432881 | 52.910 | 189 | 88 | 1 | 16 | 204 | 92 | 279 | 6.95e-65 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451310 | AT2G39450.1 | 85.149 | 202 | 30 | 0 | 1 | 202 | 78 | 279 | 4.44e-109 | 319 |
| Msa1451310 | AT1G79520.3 | 64.532 | 203 | 70 | 2 | 1 | 202 | 34 | 235 | 9.61e-83 | 250 |
| Msa1451310 | AT1G79520.4 | 64.532 | 203 | 70 | 2 | 1 | 202 | 34 | 235 | 9.61e-83 | 250 |
| Msa1451310 | AT1G79520.1 | 64.532 | 203 | 70 | 2 | 1 | 202 | 87 | 288 | 1.28e-81 | 249 |
| Msa1451310 | AT1G79520.2 | 64.532 | 203 | 70 | 2 | 1 | 202 | 99 | 300 | 1.83e-81 | 249 |
| Msa1451310 | AT1G16310.2 | 62.069 | 203 | 75 | 2 | 1 | 202 | 1 | 202 | 7.27e-81 | 244 |
| Msa1451310 | AT1G16310.1 | 61.463 | 205 | 77 | 2 | 1 | 204 | 114 | 317 | 8.62e-79 | 243 |
| Msa1451310 | AT3G58060.2 | 56.180 | 178 | 78 | 0 | 25 | 202 | 113 | 290 | 4.33e-66 | 209 |
| Msa1451310 | AT3G58060.1 | 56.180 | 178 | 78 | 0 | 25 | 202 | 113 | 290 | 4.33e-66 | 209 |
Find 69 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTCTGGACCTCCTTTC+TGG | 0.043075 | tig0033388:+771 | Msa1451310:CDS |
| TCCTTTCTGGATTTATCTTA+TGG | 0.146709 | tig0033388:+784 | Msa1451310:CDS |
| CCTAGGGCTGCAAATAATTT+TGG | 0.179599 | tig0033388:+1033 | Msa1451310:CDS |
| CATCCAATCATCAAAATAAT+TGG | 0.258777 | tig0033388:-1393 | Msa1451310:intergenic |
| TGGTCTAATTGCTGCACTTT+TGG | 0.273816 | tig0033388:+1370 | Msa1451310:CDS |
| TAATTGTGTGCAGGGAATTC+TGG | 0.280150 | tig0033388:+988 | Msa1451310:intron |
| GCAGAGCGTGGTTTCCTTCC+CGG | 0.286014 | tig0033388:+222 | Msa1451310:CDS |
| ATATGCTTTCTAAGTTTGTT+TGG | 0.304776 | tig0033388:+51 | None:intergenic |
| AATAGAAACCTTTGACATTC+CGG | 0.314411 | tig0033388:-241 | Msa1451310:intergenic |
| CTCTGCTAAGGCATCCATTT+CGG | 0.359363 | tig0033388:-205 | Msa1451310:intergenic |
| AATCCGTATCAGTACCCTAT+TGG | 0.365036 | tig0033388:+834 | Msa1451310:CDS |
| ATAGAAACCTTTGACATTCC+GGG | 0.389148 | tig0033388:-240 | Msa1451310:intergenic |
| GGAACAAGAGCGCTGGGTTG+TGG | 0.397367 | tig0033388:+1226 | Msa1451310:CDS |
| GTTTGGACTCTGCTATTTAA+CGG | 0.399110 | tig0033388:+68 | Msa1451310:five_prime_UTR |
| GCTTGAAGGCTTTACCGAAA+TGG | 0.410063 | tig0033388:+191 | Msa1451310:exon |
| GCCTCTGTCATGGCGACCCT+AGG | 0.414807 | tig0033388:+1016 | Msa1451310:CDS |
| TGCATCCGCTTCTTTCCAAT+AGG | 0.419106 | tig0033388:-849 | Msa1451310:intergenic |
| ATAGGGTACTGATACGGATT+TGG | 0.428517 | tig0033388:-831 | Msa1451310:intergenic |
| GCATCCGCTTCTTTCCAATA+GGG | 0.430128 | tig0033388:-848 | Msa1451310:intergenic |
| CAGCAGGTTGAAGTGCTTGA+AGG | 0.440105 | tig0033388:+177 | Msa1451310:five_prime_UTR |
| GATGTGATCACTAATGTGAT+TGG | 0.442921 | tig0033388:+1350 | Msa1451310:CDS |
| ATCCACTTTAGACTCTCTTC+TGG | 0.448253 | tig0033388:+758 | Msa1451310:CDS |
| TATTATGCTTTCAGTGACTT+TGG | 0.454551 | tig0033388:+1250 | Msa1451310:CDS |
| GATGGCAAACGTCTCGCTCC+TGG | 0.461933 | tig0033388:-652 | Msa1451310:intergenic |
| GAACAAGAGCGCTGGGTTGT+GGG | 0.470812 | tig0033388:+1227 | Msa1451310:CDS |
| CCAAAATTATTTGCAGCCCT+AGG | 0.489435 | tig0033388:-1033 | Msa1451310:intergenic |
| TCTGACTGATGCATAAACTT+TGG | 0.494540 | tig0033388:-712 | Msa1451310:intergenic |
| TTTGGTAGTGTGGTGGAGGT+AGG | 0.498955 | tig0033388:+2051 | Msa1451310:intron |
| GACTAGGGAACAAGAGCGCT+GGG | 0.500550 | tig0033388:+1220 | Msa1451310:CDS |
| GTCTAAAGTGGATGCAATGA+TGG | 0.501643 | tig0033388:-748 | Msa1451310:intergenic |
| AGGAGCGAGATAAGTTAGCC+AGG | 0.501817 | tig0033388:+634 | Msa1451310:CDS |
| CAAAATTATTTGCAGCCCTA+GGG | 0.512102 | tig0033388:-1032 | Msa1451310:intergenic |
| CTTACAATGATAGCACCAAC+AGG | 0.517600 | tig0033388:-1419 | Msa1451310:intergenic |
| AAGTGGATGCAATGATGGCT+AGG | 0.517651 | tig0033388:-743 | Msa1451310:intergenic |
| ATAATACCTTCAGCTTGACT+AGG | 0.518093 | tig0033388:+1204 | Msa1451310:CDS |
| TGCACTCGTGGCGAGGGTAA+AGG | 0.520141 | tig0033388:+2085 | Msa1451310:CDS |
| AAGGAAACCACGCTCTGCTA+AGG | 0.531828 | tig0033388:-217 | Msa1451310:intergenic |
| TTTCCAATAGGGTACTGATA+CGG | 0.535905 | tig0033388:-837 | Msa1451310:intergenic |
| TTTCCTTCCCGGAATGTCAA+AGG | 0.540211 | tig0033388:+233 | Msa1451310:CDS |
| TGGTTCCTTTGGTAGTGTGG+TGG | 0.540371 | tig0033388:+2044 | Msa1451310:intron |
| TTCCTTTGGTAGTGTGGTGG+AGG | 0.542583 | tig0033388:+2047 | Msa1451310:intron |
| AGCTATGTTCGATATTCTGA+TGG | 0.545423 | tig0033388:-670 | Msa1451310:intergenic |
| TACAGTGTATATTAGTGTGC+GGG | 0.552886 | tig0033388:-1062 | Msa1451310:intergenic |
| CCTCTGTCATGGCGACCCTA+GGG | 0.553847 | tig0033388:+1017 | Msa1451310:CDS |
| GACTCTGCTATTTAACGGAA+AGG | 0.560239 | tig0033388:+73 | Msa1451310:five_prime_UTR |
| TGCTGAGTACTATCAGCAGC+AGG | 0.563087 | tig0033388:+161 | Msa1451310:five_prime_UTR |
| GATTGTGAAGGCCTATGCTC+AGG | 0.566596 | tig0033388:+1316 | Msa1451310:CDS |
| TAGTGTGGTGGAGGTAGGAG+AGG | 0.570358 | tig0033388:+2056 | Msa1451310:intron |
| ATACGGATTTGGTGTTTGCA+TGG | 0.571306 | tig0033388:-820 | Msa1451310:intergenic |
| AGTGGATGCAATGATGGCTA+GGG | 0.572444 | tig0033388:-742 | Msa1451310:intergenic |
| GACATGGTGCACTCGTGGCG+AGG | 0.576676 | tig0033388:+2078 | Msa1451310:CDS |
| AAAGAAGCGGATGCAACCAT+TGG | 0.577177 | tig0033388:+857 | Msa1451310:CDS |
| ACCATAAGATAAATCCAGAA+AGG | 0.578791 | tig0033388:-785 | Msa1451310:intergenic |
| TAATACCTTCAGCTTGACTA+GGG | 0.583412 | tig0033388:+1205 | Msa1451310:CDS |
| GATGATTGGATGGATCCTGT+TGG | 0.588009 | tig0033388:+1404 | Msa1451310:CDS |
| GTCCAGAAGAGAGTCTAAAG+TGG | 0.592680 | tig0033388:-760 | Msa1451310:intergenic |
| CCCTAGGGTCGCCATGACAG+AGG | 0.598487 | tig0033388:-1017 | Msa1451310:intergenic |
| GAGAGGACATGGTGCACTCG+TGG | 0.608533 | tig0033388:+2073 | Msa1451310:CDS |
| GTTTATGCATCAGTCAGAAG+TGG | 0.609513 | tig0033388:+717 | Msa1451310:CDS |
| ACATGGTGCACTCGTGGCGA+GGG | 0.617409 | tig0033388:+2079 | Msa1451310:CDS |
| GGTGGAGGTAGGAGAGGACA+TGG | 0.632359 | tig0033388:+2062 | Msa1451310:CDS |
| AATATCGAACATAGCTAACA+TGG | 0.635618 | tig0033388:+677 | Msa1451310:CDS |
| ATAAGATAAATCCAGAAAGG+AGG | 0.638365 | tig0033388:-782 | Msa1451310:intergenic |
| TTGTTCCCTAGTCAAGCTGA+AGG | 0.646037 | tig0033388:-1210 | Msa1451310:intergenic |
| ATGGATGCCTTAGCAGAGCG+TGG | 0.649962 | tig0033388:+210 | Msa1451310:CDS |
| AAACCTTTGACATTCCGGGA+AGG | 0.650213 | tig0033388:-236 | Msa1451310:intergenic |
| TTACAGTGTATATTAGTGTG+CGG | 0.655284 | tig0033388:-1063 | Msa1451310:intergenic |
| CAATCTCATTAGTAAAAGAG+CGG | 0.658060 | tig0033388:-1298 | Msa1451310:intergenic |
| AGTACCCTATTGGAAAGAAG+CGG | 0.658390 | tig0033388:+844 | Msa1451310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATTTGAATGATCTT+TGG | + | tig0033388:1804-1823 | Msa1451310:intron | 15.0% |
| !! | CCATTAAAAAAAAAATTGAA+TGG | - | tig0033388:1844-1863 | Msa1451310:intergenic | 15.0% |
| !!! | CCATTCAATTTTTTTTTTAA+TGG | + | tig0033388:1841-1860 | Msa1451310:intron | 15.0% |
| !! | ATAGGATTAATTTACTAAAT+TGG | + | tig0033388:1963-1982 | Msa1451310:intron | 15.0% |
| !! | ATTTAAATTTGAATGATCTT+TGG | + | tig0033388:1804-1823 | Msa1451310:intron | 15.0% |
| !! | CCATTAAAAAAAAAATTGAA+TGG | - | tig0033388:1844-1863 | Msa1451310:intergenic | 15.0% |
| !!! | CCATTCAATTTTTTTTTTAA+TGG | + | tig0033388:1841-1860 | Msa1451310:intron | 15.0% |
| !! | ATAGGATTAATTTACTAAAT+TGG | + | tig0033388:1963-1982 | Msa1451310:intron | 15.0% |
| !! | CAATTACCTATAAATTAATG+GGG | - | tig0033388:1151-1170 | Msa1451310:intergenic | 20.0% |
| !! | CCAATTACCTATAAATTAAT+GGG | - | tig0033388:1152-1171 | Msa1451310:intergenic | 20.0% |
| !! | ACCAATTACCTATAAATTAA+TGG | - | tig0033388:1153-1172 | Msa1451310:intergenic | 20.0% |
| !! | GATTTATAGCCTAATTAAAT+AGG | + | tig0033388:1487-1506 | Msa1451310:intron | 20.0% |
| !! | ATTGACATTCCTATTTAATT+AGG | - | tig0033388:1499-1518 | Msa1451310:intergenic | 20.0% |
| !! | TTCCTTTCTTATACTATATA+TGG | + | tig0033388:1544-1563 | Msa1451310:intron | 20.0% |
| !! | TCCTTTCTTATACTATATAT+GGG | + | tig0033388:1545-1564 | Msa1451310:intron | 20.0% |
| !! | AACTAAAATGTGTAGATATT+AGG | - | tig0033388:1674-1693 | Msa1451310:intergenic | 20.0% |
| !! | GTAAATAAATGCAATGAATA+AGG | - | tig0033388:1730-1749 | Msa1451310:intergenic | 20.0% |
| !! | ATTATTAAAGAAACAAGAAG+GGG | - | tig0033388:1934-1953 | Msa1451310:intergenic | 20.0% |
| !! | CATTATTAAAGAAACAAGAA+GGG | - | tig0033388:1935-1954 | Msa1451310:intergenic | 20.0% |
| !!! | CTTCTTGTTTCTTTAATAAT+GGG | + | tig0033388:1934-1953 | Msa1451310:intron | 20.0% |
| !! | CAATTACCTATAAATTAATG+GGG | - | tig0033388:1151-1170 | Msa1451310:intergenic | 20.0% |
| !! | CCAATTACCTATAAATTAAT+GGG | - | tig0033388:1152-1171 | Msa1451310:intergenic | 20.0% |
| !! | ACCAATTACCTATAAATTAA+TGG | - | tig0033388:1153-1172 | Msa1451310:intergenic | 20.0% |
| !! | GATTTATAGCCTAATTAAAT+AGG | + | tig0033388:1487-1506 | Msa1451310:intron | 20.0% |
| !! | ATTGACATTCCTATTTAATT+AGG | - | tig0033388:1499-1518 | Msa1451310:intergenic | 20.0% |
| !! | TTCCTTTCTTATACTATATA+TGG | + | tig0033388:1544-1563 | Msa1451310:intron | 20.0% |
| !! | TCCTTTCTTATACTATATAT+GGG | + | tig0033388:1545-1564 | Msa1451310:intron | 20.0% |
| !! | AACTAAAATGTGTAGATATT+AGG | - | tig0033388:1674-1693 | Msa1451310:intergenic | 20.0% |
| !! | GTAAATAAATGCAATGAATA+AGG | - | tig0033388:1730-1749 | Msa1451310:intergenic | 20.0% |
| !! | ATTATTAAAGAAACAAGAAG+GGG | - | tig0033388:1934-1953 | Msa1451310:intergenic | 20.0% |
| !! | CATTATTAAAGAAACAAGAA+GGG | - | tig0033388:1935-1954 | Msa1451310:intergenic | 20.0% |
| !!! | CTTCTTGTTTCTTTAATAAT+GGG | + | tig0033388:1934-1953 | Msa1451310:intron | 20.0% |
| !!! | GTTTTCTTTTCTGTTTTGTT+AGG | + | tig0033388:123-142 | Msa1451310:five_prime_UTR | 25.0% |
| ! | TTTAGATCTAGAGAAGATAA+AGG | - | tig0033388:276-295 | Msa1451310:intergenic | 25.0% |
| !! | ATTAAGTTGTTTAGCTAAAG+AGG | - | tig0033388:309-328 | Msa1451310:intergenic | 25.0% |
| !! | GATGTTTTCTTATGAAATCA+TGG | + | tig0033388:433-452 | Msa1451310:intron | 25.0% |
| ! | ATGTAATAAGATGTTTCCAT+AGG | + | tig0033388:498-517 | Msa1451310:intron | 25.0% |
| ! | CAAAACAGGATATTAATATG+AGG | - | tig0033388:888-907 | Msa1451310:intergenic | 25.0% |
| ! | TAGTAGTTATGAATGTATCT+TGG | + | tig0033388:937-956 | Msa1451310:intron | 25.0% |
| !!! | ATATACACTGTAAGTTGATT+TGG | + | tig0033388:1073-1092 | Msa1451310:intron | 25.0% |
| !! | AACAGTTAATAGTAGTTTGT+TGG | + | tig0033388:1124-1143 | Msa1451310:intron | 25.0% |
| ! | CCCATTAATTTATAGGTAAT+TGG | + | tig0033388:1149-1168 | Msa1451310:intron | 25.0% |
| ! | TTTGTCTAAATGAAATTTCC+AGG | + | tig0033388:1181-1200 | Msa1451310:intron | 25.0% |
| !! | TTTTACTAATGAGATTGTGA+AGG | + | tig0033388:1304-1323 | Msa1451310:CDS | 25.0% |
| ! | CATCCAATCATCAAAATAAT+TGG | - | tig0033388:1396-1415 | Msa1451310:intergenic | 25.0% |
| !!! | CAATTATTTTGATGATTGGA+TGG | + | tig0033388:1394-1413 | Msa1451310:CDS | 25.0% |
| ! | GTATTATAGAGATTCACATA+AGG | - | tig0033388:1455-1474 | Msa1451310:intergenic | 25.0% |
| ! | ATAGTATAAGAAAGGAATCA+TGG | - | tig0033388:1541-1560 | Msa1451310:intergenic | 25.0% |
| ! | ACCCATATATAGTATAAGAA+AGG | - | tig0033388:1549-1568 | Msa1451310:intergenic | 25.0% |
| !! | TTGTACTTTTCCTGAATATT+TGG | + | tig0033388:1884-1903 | Msa1451310:intron | 25.0% |
| ! | CTATATTGAACCAAATATTC+AGG | - | tig0033388:1897-1916 | Msa1451310:intergenic | 25.0% |
| !! | CTGAATATTTGGTTCAATAT+AGG | + | tig0033388:1895-1914 | Msa1451310:intron | 25.0% |
| ! | CCATTATTAAAGAAACAAGA+AGG | - | tig0033388:1936-1955 | Msa1451310:intergenic | 25.0% |
| !! | CCTTCTTGTTTCTTTAATAA+TGG | + | tig0033388:1933-1952 | Msa1451310:intron | 25.0% |
| !! | TTGTTTCTTTAATAATGGGA+GGG | + | tig0033388:1938-1957 | Msa1451310:intron | 25.0% |
| ! | GGATTAATTTACTAAATTGG+TGG | + | tig0033388:1966-1985 | Msa1451310:intron | 25.0% |
| !!! | GTTTTCTTTTCTGTTTTGTT+AGG | + | tig0033388:123-142 | Msa1451310:five_prime_UTR | 25.0% |
| ! | TTTAGATCTAGAGAAGATAA+AGG | - | tig0033388:276-295 | Msa1451310:intergenic | 25.0% |
| !! | ATTAAGTTGTTTAGCTAAAG+AGG | - | tig0033388:309-328 | Msa1451310:intergenic | 25.0% |
| !! | GATGTTTTCTTATGAAATCA+TGG | + | tig0033388:433-452 | Msa1451310:intron | 25.0% |
| ! | ATGTAATAAGATGTTTCCAT+AGG | + | tig0033388:498-517 | Msa1451310:intron | 25.0% |
| ! | CAAAACAGGATATTAATATG+AGG | - | tig0033388:888-907 | Msa1451310:intergenic | 25.0% |
| ! | TAGTAGTTATGAATGTATCT+TGG | + | tig0033388:937-956 | Msa1451310:intron | 25.0% |
| !!! | ATATACACTGTAAGTTGATT+TGG | + | tig0033388:1073-1092 | Msa1451310:intron | 25.0% |
| !! | AACAGTTAATAGTAGTTTGT+TGG | + | tig0033388:1124-1143 | Msa1451310:intron | 25.0% |
| ! | CCCATTAATTTATAGGTAAT+TGG | + | tig0033388:1149-1168 | Msa1451310:intron | 25.0% |
| ! | TTTGTCTAAATGAAATTTCC+AGG | + | tig0033388:1181-1200 | Msa1451310:intron | 25.0% |
| !! | TTTTACTAATGAGATTGTGA+AGG | + | tig0033388:1304-1323 | Msa1451310:CDS | 25.0% |
| ! | CATCCAATCATCAAAATAAT+TGG | - | tig0033388:1396-1415 | Msa1451310:intergenic | 25.0% |
| !!! | CAATTATTTTGATGATTGGA+TGG | + | tig0033388:1394-1413 | Msa1451310:CDS | 25.0% |
| ! | GTATTATAGAGATTCACATA+AGG | - | tig0033388:1455-1474 | Msa1451310:intergenic | 25.0% |
| ! | ATAGTATAAGAAAGGAATCA+TGG | - | tig0033388:1541-1560 | Msa1451310:intergenic | 25.0% |
| ! | ACCCATATATAGTATAAGAA+AGG | - | tig0033388:1549-1568 | Msa1451310:intergenic | 25.0% |
| !! | TTGTACTTTTCCTGAATATT+TGG | + | tig0033388:1884-1903 | Msa1451310:intron | 25.0% |
| ! | CTATATTGAACCAAATATTC+AGG | - | tig0033388:1897-1916 | Msa1451310:intergenic | 25.0% |
| !! | CTGAATATTTGGTTCAATAT+AGG | + | tig0033388:1895-1914 | Msa1451310:intron | 25.0% |
| ! | CCATTATTAAAGAAACAAGA+AGG | - | tig0033388:1936-1955 | Msa1451310:intergenic | 25.0% |
| !! | CCTTCTTGTTTCTTTAATAA+TGG | + | tig0033388:1933-1952 | Msa1451310:intron | 25.0% |
| !! | TTGTTTCTTTAATAATGGGA+GGG | + | tig0033388:1938-1957 | Msa1451310:intron | 25.0% |
| ! | GGATTAATTTACTAAATTGG+TGG | + | tig0033388:1966-1985 | Msa1451310:intron | 25.0% |
| AATAGAAACCTTTGACATTC+CGG | - | tig0033388:244-263 | Msa1451310:intergenic | 30.0% | |
| GTTTAGCTAAAGAGGATTAT+TGG | - | tig0033388:301-320 | Msa1451310:intergenic | 30.0% | |
| GCTTATTTGAACTTATGATC+TGG | - | tig0033388:554-573 | Msa1451310:intergenic | 30.0% | |
| AATATCGAACATAGCTAACA+TGG | + | tig0033388:677-696 | Msa1451310:CDS | 30.0% | |
| ATAAGATAAATCCAGAAAGG+AGG | - | tig0033388:785-804 | Msa1451310:intergenic | 30.0% | |
| TCCTTTCTGGATTTATCTTA+TGG | + | tig0033388:784-803 | Msa1451310:CDS | 30.0% | |
| ACCATAAGATAAATCCAGAA+AGG | - | tig0033388:788-807 | Msa1451310:intergenic | 30.0% | |
| AAAATTGTGTAATTGTGTGC+AGG | + | tig0033388:979-998 | Msa1451310:intron | 30.0% | |
| AAATTGTGTAATTGTGTGCA+GGG | + | tig0033388:980-999 | Msa1451310:intron | 30.0% | |
| TTACAGTGTATATTAGTGTG+CGG | - | tig0033388:1066-1085 | Msa1451310:intergenic | 30.0% | |
| TATTATGCTTTCAGTGACTT+TGG | + | tig0033388:1250-1269 | Msa1451310:CDS | 30.0% | |
| CAATCTCATTAGTAAAAGAG+CGG | - | tig0033388:1301-1320 | Msa1451310:intergenic | 30.0% | |
| !!! | TGGCCAATTATTTTGATGAT+TGG | + | tig0033388:1390-1409 | Msa1451310:CDS | 30.0% |
| TAGTAACTCACTAAAATGTG+TGG | + | tig0033388:1588-1607 | Msa1451310:intron | 30.0% | |
| AGTAACTCACTAAAATGTGT+GGG | + | tig0033388:1589-1608 | Msa1451310:intron | 30.0% | |
| CATTCAAATACAGCAGAAAA+AGG | - | tig0033388:1752-1771 | Msa1451310:intergenic | 30.0% | |
| ! | TTTTCTGCTGTATTTGAATG+TGG | + | tig0033388:1752-1771 | Msa1451310:intron | 30.0% |
| ! | CTTGTTTCTTTAATAATGGG+AGG | + | tig0033388:1937-1956 | Msa1451310:intron | 30.0% |
| ! | TTTAATAATGGGAGGGAAAT+AGG | + | tig0033388:1945-1964 | Msa1451310:intron | 30.0% |
| TTTACTAAATTGGTGGAAAG+TGG | + | tig0033388:1973-1992 | Msa1451310:intron | 30.0% | |
| AATAGAAACCTTTGACATTC+CGG | - | tig0033388:244-263 | Msa1451310:intergenic | 30.0% | |
| GTTTAGCTAAAGAGGATTAT+TGG | - | tig0033388:301-320 | Msa1451310:intergenic | 30.0% | |
| GCTTATTTGAACTTATGATC+TGG | - | tig0033388:554-573 | Msa1451310:intergenic | 30.0% | |
| AATATCGAACATAGCTAACA+TGG | + | tig0033388:677-696 | Msa1451310:CDS | 30.0% | |
| ATAAGATAAATCCAGAAAGG+AGG | - | tig0033388:785-804 | Msa1451310:intergenic | 30.0% | |
| TCCTTTCTGGATTTATCTTA+TGG | + | tig0033388:784-803 | Msa1451310:CDS | 30.0% | |
| ACCATAAGATAAATCCAGAA+AGG | - | tig0033388:788-807 | Msa1451310:intergenic | 30.0% | |
| AAAATTGTGTAATTGTGTGC+AGG | + | tig0033388:979-998 | Msa1451310:intron | 30.0% | |
| AAATTGTGTAATTGTGTGCA+GGG | + | tig0033388:980-999 | Msa1451310:intron | 30.0% | |
| TTACAGTGTATATTAGTGTG+CGG | - | tig0033388:1066-1085 | Msa1451310:intergenic | 30.0% | |
| TATTATGCTTTCAGTGACTT+TGG | + | tig0033388:1250-1269 | Msa1451310:CDS | 30.0% | |
| CAATCTCATTAGTAAAAGAG+CGG | - | tig0033388:1301-1320 | Msa1451310:intergenic | 30.0% | |
| !!! | TGGCCAATTATTTTGATGAT+TGG | + | tig0033388:1390-1409 | Msa1451310:CDS | 30.0% |
| TAGTAACTCACTAAAATGTG+TGG | + | tig0033388:1588-1607 | Msa1451310:intron | 30.0% | |
| AGTAACTCACTAAAATGTGT+GGG | + | tig0033388:1589-1608 | Msa1451310:intron | 30.0% | |
| CATTCAAATACAGCAGAAAA+AGG | - | tig0033388:1752-1771 | Msa1451310:intergenic | 30.0% | |
| ! | TTTTCTGCTGTATTTGAATG+TGG | + | tig0033388:1752-1771 | Msa1451310:intron | 30.0% |
| ! | CTTGTTTCTTTAATAATGGG+AGG | + | tig0033388:1937-1956 | Msa1451310:intron | 30.0% |
| ! | TTTAATAATGGGAGGGAAAT+AGG | + | tig0033388:1945-1964 | Msa1451310:intron | 30.0% |
| TTTACTAAATTGGTGGAAAG+TGG | + | tig0033388:1973-1992 | Msa1451310:intron | 30.0% | |
| ! | GTTTGGACTCTGCTATTTAA+CGG | + | tig0033388:68-87 | Msa1451310:five_prime_UTR | 35.0% |
| ATAGAAACCTTTGACATTCC+GGG | - | tig0033388:243-262 | Msa1451310:intergenic | 35.0% | |
| TTTGACTCTATAGTCTCGTT+TGG | - | tig0033388:581-600 | Msa1451310:intergenic | 35.0% | |
| AGCTATGTTCGATATTCTGA+TGG | - | tig0033388:673-692 | Msa1451310:intergenic | 35.0% | |
| TCTGACTGATGCATAAACTT+TGG | - | tig0033388:715-734 | Msa1451310:intergenic | 35.0% | |
| !! | TTTCCAATAGGGTACTGATA+CGG | - | tig0033388:840-859 | Msa1451310:intergenic | 35.0% |
| TTAATATGAGGACTGACCAA+TGG | - | tig0033388:876-895 | Msa1451310:intergenic | 35.0% | |
| GATTCAGAAAACGTCAAAAC+AGG | - | tig0033388:902-921 | Msa1451310:intergenic | 35.0% | |
| CAAAATTATTTGCAGCCCTA+GGG | - | tig0033388:1035-1054 | Msa1451310:intergenic | 35.0% | |
| TACAGTGTATATTAGTGTGC+GGG | - | tig0033388:1065-1084 | Msa1451310:intergenic | 35.0% | |
| ! | TGATTTGGCTATATATCCTG+AGG | + | tig0033388:1088-1107 | Msa1451310:intron | 35.0% |
| GTTGGACCCCATTAATTTAT+AGG | + | tig0033388:1142-1161 | Msa1451310:intron | 35.0% | |
| ATAATACCTTCAGCTTGACT+AGG | + | tig0033388:1204-1223 | Msa1451310:CDS | 35.0% | |
| TAATACCTTCAGCTTGACTA+GGG | + | tig0033388:1205-1224 | Msa1451310:CDS | 35.0% | |
| AAAAAAGTGATCCTGAGCAT+AGG | - | tig0033388:1330-1349 | Msa1451310:intergenic | 35.0% | |
| GATGTGATCACTAATGTGAT+TGG | + | tig0033388:1350-1369 | Msa1451310:CDS | 35.0% | |
| ATATGGGTAGAATTGAGTAC+AGG | + | tig0033388:1561-1580 | Msa1451310:intron | 35.0% | |
| TCACTAAAATGTGTGGGTAT+GGG | + | tig0033388:1595-1614 | Msa1451310:intron | 35.0% | |
| AATATAGTGTGTCCAGAATG+TGG | - | tig0033388:1640-1659 | Msa1451310:intergenic | 35.0% | |
| ! | GTTTGGACTCTGCTATTTAA+CGG | + | tig0033388:68-87 | Msa1451310:five_prime_UTR | 35.0% |
| ATAGAAACCTTTGACATTCC+GGG | - | tig0033388:243-262 | Msa1451310:intergenic | 35.0% | |
| TTTGACTCTATAGTCTCGTT+TGG | - | tig0033388:581-600 | Msa1451310:intergenic | 35.0% | |
| AGCTATGTTCGATATTCTGA+TGG | - | tig0033388:673-692 | Msa1451310:intergenic | 35.0% | |
| TCTGACTGATGCATAAACTT+TGG | - | tig0033388:715-734 | Msa1451310:intergenic | 35.0% | |
| !! | TTTCCAATAGGGTACTGATA+CGG | - | tig0033388:840-859 | Msa1451310:intergenic | 35.0% |
| TTAATATGAGGACTGACCAA+TGG | - | tig0033388:876-895 | Msa1451310:intergenic | 35.0% | |
| GATTCAGAAAACGTCAAAAC+AGG | - | tig0033388:902-921 | Msa1451310:intergenic | 35.0% | |
| CAAAATTATTTGCAGCCCTA+GGG | - | tig0033388:1035-1054 | Msa1451310:intergenic | 35.0% | |
| TACAGTGTATATTAGTGTGC+GGG | - | tig0033388:1065-1084 | Msa1451310:intergenic | 35.0% | |
| ! | TGATTTGGCTATATATCCTG+AGG | + | tig0033388:1088-1107 | Msa1451310:intron | 35.0% |
| GTTGGACCCCATTAATTTAT+AGG | + | tig0033388:1142-1161 | Msa1451310:intron | 35.0% | |
| ATAATACCTTCAGCTTGACT+AGG | + | tig0033388:1204-1223 | Msa1451310:CDS | 35.0% | |
| TAATACCTTCAGCTTGACTA+GGG | + | tig0033388:1205-1224 | Msa1451310:CDS | 35.0% | |
| AAAAAAGTGATCCTGAGCAT+AGG | - | tig0033388:1330-1349 | Msa1451310:intergenic | 35.0% | |
| GATGTGATCACTAATGTGAT+TGG | + | tig0033388:1350-1369 | Msa1451310:CDS | 35.0% | |
| ATATGGGTAGAATTGAGTAC+AGG | + | tig0033388:1561-1580 | Msa1451310:intron | 35.0% | |
| TCACTAAAATGTGTGGGTAT+GGG | + | tig0033388:1595-1614 | Msa1451310:intron | 35.0% | |
| AATATAGTGTGTCCAGAATG+TGG | - | tig0033388:1640-1659 | Msa1451310:intergenic | 35.0% | |
| ! | GACTCTGCTATTTAACGGAA+AGG | + | tig0033388:73-92 | Msa1451310:five_prime_UTR | 40.0% |
| CTCTATAGTCTCGTTTGGAT+TGG | - | tig0033388:576-595 | Msa1451310:intergenic | 40.0% | |
| GACTATAGAGTCAAATGCCT+TGG | + | tig0033388:586-605 | Msa1451310:intron | 40.0% | |
| GAGTATCCACAATTGTATGC+AGG | + | tig0033388:611-630 | Msa1451310:intron | 40.0% | |
| TATCCACAATTGTATGCAGG+AGG | + | tig0033388:614-633 | Msa1451310:intron | 40.0% | |
| GTTTATGCATCAGTCAGAAG+TGG | + | tig0033388:717-736 | Msa1451310:CDS | 40.0% | |
| ! | GTCTAAAGTGGATGCAATGA+TGG | - | tig0033388:751-770 | Msa1451310:intergenic | 40.0% |
| ATCCACTTTAGACTCTCTTC+TGG | + | tig0033388:758-777 | Msa1451310:CDS | 40.0% | |
| !! | ATACGGATTTGGTGTTTGCA+TGG | - | tig0033388:823-842 | Msa1451310:intergenic | 40.0% |
| !! | ATAGGGTACTGATACGGATT+TGG | - | tig0033388:834-853 | Msa1451310:intergenic | 40.0% |
| AATCCGTATCAGTACCCTAT+TGG | + | tig0033388:834-853 | Msa1451310:CDS | 40.0% | |
| AGTACCCTATTGGAAAGAAG+CGG | + | tig0033388:844-863 | Msa1451310:CDS | 40.0% | |
| TAATTGTGTGCAGGGAATTC+TGG | + | tig0033388:988-1007 | Msa1451310:intron | 40.0% | |
| CCAAAATTATTTGCAGCCCT+AGG | - | tig0033388:1036-1055 | Msa1451310:intergenic | 40.0% | |
| ! | CCTAGGGCTGCAAATAATTT+TGG | + | tig0033388:1033-1052 | Msa1451310:CDS | 40.0% |
| GTTTGTATCAACTTTGCCTC+AGG | - | tig0033388:1107-1126 | Msa1451310:intergenic | 40.0% | |
| !! | TCAAGCTGAAGGTATTATCC+TGG | - | tig0033388:1202-1221 | Msa1451310:intergenic | 40.0% |
| ! | TGGTCTAATTGCTGCACTTT+TGG | + | tig0033388:1370-1389 | Msa1451310:CDS | 40.0% |
| CTTACAATGATAGCACCAAC+AGG | - | tig0033388:1422-1441 | Msa1451310:intergenic | 40.0% | |
| CTCACTAAAATGTGTGGGTA+TGG | + | tig0033388:1594-1613 | Msa1451310:intron | 40.0% | |
| CTAAATTGGTGGAAAGTGGT+TGG | + | tig0033388:1977-1996 | Msa1451310:intron | 40.0% | |
| ! | GACTCTGCTATTTAACGGAA+AGG | + | tig0033388:73-92 | Msa1451310:five_prime_UTR | 40.0% |
| CTCTATAGTCTCGTTTGGAT+TGG | - | tig0033388:576-595 | Msa1451310:intergenic | 40.0% | |
| GACTATAGAGTCAAATGCCT+TGG | + | tig0033388:586-605 | Msa1451310:intron | 40.0% | |
| GAGTATCCACAATTGTATGC+AGG | + | tig0033388:611-630 | Msa1451310:intron | 40.0% | |
| TATCCACAATTGTATGCAGG+AGG | + | tig0033388:614-633 | Msa1451310:intron | 40.0% | |
| GTTTATGCATCAGTCAGAAG+TGG | + | tig0033388:717-736 | Msa1451310:CDS | 40.0% | |
| ! | GTCTAAAGTGGATGCAATGA+TGG | - | tig0033388:751-770 | Msa1451310:intergenic | 40.0% |
| ATCCACTTTAGACTCTCTTC+TGG | + | tig0033388:758-777 | Msa1451310:CDS | 40.0% | |
| !! | ATACGGATTTGGTGTTTGCA+TGG | - | tig0033388:823-842 | Msa1451310:intergenic | 40.0% |
| !! | ATAGGGTACTGATACGGATT+TGG | - | tig0033388:834-853 | Msa1451310:intergenic | 40.0% |
| AATCCGTATCAGTACCCTAT+TGG | + | tig0033388:834-853 | Msa1451310:CDS | 40.0% | |
| AGTACCCTATTGGAAAGAAG+CGG | + | tig0033388:844-863 | Msa1451310:CDS | 40.0% | |
| TAATTGTGTGCAGGGAATTC+TGG | + | tig0033388:988-1007 | Msa1451310:intron | 40.0% | |
| CCAAAATTATTTGCAGCCCT+AGG | - | tig0033388:1036-1055 | Msa1451310:intergenic | 40.0% | |
| ! | CCTAGGGCTGCAAATAATTT+TGG | + | tig0033388:1033-1052 | Msa1451310:CDS | 40.0% |
| GTTTGTATCAACTTTGCCTC+AGG | - | tig0033388:1107-1126 | Msa1451310:intergenic | 40.0% | |
| !! | TCAAGCTGAAGGTATTATCC+TGG | - | tig0033388:1202-1221 | Msa1451310:intergenic | 40.0% |
| ! | TGGTCTAATTGCTGCACTTT+TGG | + | tig0033388:1370-1389 | Msa1451310:CDS | 40.0% |
| CTTACAATGATAGCACCAAC+AGG | - | tig0033388:1422-1441 | Msa1451310:intergenic | 40.0% | |
| CTCACTAAAATGTGTGGGTA+TGG | + | tig0033388:1594-1613 | Msa1451310:intron | 40.0% | |
| CTAAATTGGTGGAAAGTGGT+TGG | + | tig0033388:1977-1996 | Msa1451310:intron | 40.0% | |
| GCTTGAAGGCTTTACCGAAA+TGG | + | tig0033388:191-210 | Msa1451310:exon | 45.0% | |
| ! | CTCTGCTAAGGCATCCATTT+CGG | - | tig0033388:208-227 | Msa1451310:intergenic | 45.0% |
| TTTCCTTCCCGGAATGTCAA+AGG | + | tig0033388:233-252 | Msa1451310:CDS | 45.0% | |
| AAACCTTTGACATTCCGGGA+AGG | - | tig0033388:239-258 | Msa1451310:intergenic | 45.0% | |
| TTTCCATAGGCTCCCTCAAA+CGG | + | tig0033388:511-530 | Msa1451310:intron | 45.0% | |
| GCACTTGTGAAACCGTTTGA+GGG | - | tig0033388:526-545 | Msa1451310:intergenic | 45.0% | |
| AGCACTTGTGAAACCGTTTG+AGG | - | tig0033388:527-546 | Msa1451310:intergenic | 45.0% | |
| CAATTGTGGATACTCAGCCA+AGG | - | tig0033388:606-625 | Msa1451310:intergenic | 45.0% | |
| AGTGGATGCAATGATGGCTA+GGG | - | tig0033388:745-764 | Msa1451310:intergenic | 45.0% | |
| AAGTGGATGCAATGATGGCT+AGG | - | tig0033388:746-765 | Msa1451310:intergenic | 45.0% | |
| GTCCAGAAGAGAGTCTAAAG+TGG | - | tig0033388:763-782 | Msa1451310:intergenic | 45.0% | |
| GCATCCGCTTCTTTCCAATA+GGG | - | tig0033388:851-870 | Msa1451310:intergenic | 45.0% | |
| TGCATCCGCTTCTTTCCAAT+AGG | - | tig0033388:852-871 | Msa1451310:intergenic | 45.0% | |
| AAAGAAGCGGATGCAACCAT+TGG | + | tig0033388:857-876 | Msa1451310:CDS | 45.0% | |
| !!! | TCTGGTTTTTGCCTCTGTCA+TGG | + | tig0033388:1006-1025 | Msa1451310:CDS | 45.0% |
| TTGTTCCCTAGTCAAGCTGA+AGG | - | tig0033388:1213-1232 | Msa1451310:intergenic | 45.0% | |
| GATGATTGGATGGATCCTGT+TGG | + | tig0033388:1404-1423 | Msa1451310:CDS | 45.0% | |
| !! | GTGATGATGGATGGTTCCTT+TGG | + | tig0033388:2033-2052 | Msa1451310:intron | 45.0% |
| GCTTGAAGGCTTTACCGAAA+TGG | + | tig0033388:191-210 | Msa1451310:exon | 45.0% | |
| ! | CTCTGCTAAGGCATCCATTT+CGG | - | tig0033388:208-227 | Msa1451310:intergenic | 45.0% |
| TTTCCTTCCCGGAATGTCAA+AGG | + | tig0033388:233-252 | Msa1451310:CDS | 45.0% | |
| AAACCTTTGACATTCCGGGA+AGG | - | tig0033388:239-258 | Msa1451310:intergenic | 45.0% | |
| TTTCCATAGGCTCCCTCAAA+CGG | + | tig0033388:511-530 | Msa1451310:intron | 45.0% | |
| GCACTTGTGAAACCGTTTGA+GGG | - | tig0033388:526-545 | Msa1451310:intergenic | 45.0% | |
| AGCACTTGTGAAACCGTTTG+AGG | - | tig0033388:527-546 | Msa1451310:intergenic | 45.0% | |
| CAATTGTGGATACTCAGCCA+AGG | - | tig0033388:606-625 | Msa1451310:intergenic | 45.0% | |
| AGTGGATGCAATGATGGCTA+GGG | - | tig0033388:745-764 | Msa1451310:intergenic | 45.0% | |
| AAGTGGATGCAATGATGGCT+AGG | - | tig0033388:746-765 | Msa1451310:intergenic | 45.0% | |
| GTCCAGAAGAGAGTCTAAAG+TGG | - | tig0033388:763-782 | Msa1451310:intergenic | 45.0% | |
| GCATCCGCTTCTTTCCAATA+GGG | - | tig0033388:851-870 | Msa1451310:intergenic | 45.0% | |
| TGCATCCGCTTCTTTCCAAT+AGG | - | tig0033388:852-871 | Msa1451310:intergenic | 45.0% | |
| AAAGAAGCGGATGCAACCAT+TGG | + | tig0033388:857-876 | Msa1451310:CDS | 45.0% | |
| !!! | TCTGGTTTTTGCCTCTGTCA+TGG | + | tig0033388:1006-1025 | Msa1451310:CDS | 45.0% |
| TTGTTCCCTAGTCAAGCTGA+AGG | - | tig0033388:1213-1232 | Msa1451310:intergenic | 45.0% | |
| GATGATTGGATGGATCCTGT+TGG | + | tig0033388:1404-1423 | Msa1451310:CDS | 45.0% | |
| !! | GTGATGATGGATGGTTCCTT+TGG | + | tig0033388:2033-2052 | Msa1451310:intron | 45.0% |
| TGCTGAGTACTATCAGCAGC+AGG | + | tig0033388:161-180 | Msa1451310:five_prime_UTR | 50.0% | |
| ! | CAGCAGGTTGAAGTGCTTGA+AGG | + | tig0033388:177-196 | Msa1451310:five_prime_UTR | 50.0% |
| AAGGAAACCACGCTCTGCTA+AGG | - | tig0033388:220-239 | Msa1451310:intergenic | 50.0% | |
| AAACCGTTTGAGGGAGCCTA+TGG | - | tig0033388:517-536 | Msa1451310:intergenic | 50.0% | |
| GCTCCTCCTGCATACAATTG+TGG | - | tig0033388:620-639 | Msa1451310:intergenic | 50.0% | |
| AGGAGCGAGATAAGTTAGCC+AGG | + | tig0033388:634-653 | Msa1451310:CDS | 50.0% | |
| TCTCTTCTGGACCTCCTTTC+TGG | + | tig0033388:771-790 | Msa1451310:CDS | 50.0% | |
| GATTGTGAAGGCCTATGCTC+AGG | + | tig0033388:1316-1335 | Msa1451310:CDS | 50.0% | |
| GTATCCACTGTGCCACATTC+TGG | + | tig0033388:1625-1644 | Msa1451310:intron | 50.0% | |
| ! | TGGTGGAAAGTGGTTGGTGT+TGG | + | tig0033388:1983-2002 | Msa1451310:intron | 50.0% |
| !! | GTTGGTGTTGGCAGTGTTGA+AGG | + | tig0033388:1995-2014 | Msa1451310:intron | 50.0% |
| !! | TGTGTGGTGGTGATGATGGA+TGG | + | tig0033388:2024-2043 | Msa1451310:intron | 50.0% |
| !! | GGATGGTTCCTTTGGTAGTG+TGG | + | tig0033388:2041-2060 | Msa1451310:intron | 50.0% |
| !! | TGGTTCCTTTGGTAGTGTGG+TGG | + | tig0033388:2044-2063 | Msa1451310:intron | 50.0% |
| !! | TTCCTTTGGTAGTGTGGTGG+AGG | + | tig0033388:2047-2066 | Msa1451310:intron | 50.0% |
| TACCTCCACCACACTACCAA+AGG | - | tig0033388:2052-2071 | Msa1451310:intergenic | 50.0% | |
| !! | TTTGGTAGTGTGGTGGAGGT+AGG | + | tig0033388:2051-2070 | Msa1451310:intron | 50.0% |
| TGCTGAGTACTATCAGCAGC+AGG | + | tig0033388:161-180 | Msa1451310:five_prime_UTR | 50.0% | |
| ! | CAGCAGGTTGAAGTGCTTGA+AGG | + | tig0033388:177-196 | Msa1451310:five_prime_UTR | 50.0% |
| AAGGAAACCACGCTCTGCTA+AGG | - | tig0033388:220-239 | Msa1451310:intergenic | 50.0% | |
| AAACCGTTTGAGGGAGCCTA+TGG | - | tig0033388:517-536 | Msa1451310:intergenic | 50.0% | |
| GCTCCTCCTGCATACAATTG+TGG | - | tig0033388:620-639 | Msa1451310:intergenic | 50.0% | |
| AGGAGCGAGATAAGTTAGCC+AGG | + | tig0033388:634-653 | Msa1451310:CDS | 50.0% | |
| TCTCTTCTGGACCTCCTTTC+TGG | + | tig0033388:771-790 | Msa1451310:CDS | 50.0% | |
| GATTGTGAAGGCCTATGCTC+AGG | + | tig0033388:1316-1335 | Msa1451310:CDS | 50.0% | |
| GTATCCACTGTGCCACATTC+TGG | + | tig0033388:1625-1644 | Msa1451310:intron | 50.0% | |
| ! | TGGTGGAAAGTGGTTGGTGT+TGG | + | tig0033388:1983-2002 | Msa1451310:intron | 50.0% |
| !! | GTTGGTGTTGGCAGTGTTGA+AGG | + | tig0033388:1995-2014 | Msa1451310:intron | 50.0% |
| !! | TGTGTGGTGGTGATGATGGA+TGG | + | tig0033388:2024-2043 | Msa1451310:intron | 50.0% |
| !! | GGATGGTTCCTTTGGTAGTG+TGG | + | tig0033388:2041-2060 | Msa1451310:intron | 50.0% |
| !! | TGGTTCCTTTGGTAGTGTGG+TGG | + | tig0033388:2044-2063 | Msa1451310:intron | 50.0% |
| !! | TTCCTTTGGTAGTGTGGTGG+AGG | + | tig0033388:2047-2066 | Msa1451310:intron | 50.0% |
| TACCTCCACCACACTACCAA+AGG | - | tig0033388:2052-2071 | Msa1451310:intergenic | 50.0% | |
| !! | TTTGGTAGTGTGGTGGAGGT+AGG | + | tig0033388:2051-2070 | Msa1451310:intron | 50.0% |
| ATGGATGCCTTAGCAGAGCG+TGG | + | tig0033388:210-229 | Msa1451310:CDS | 55.0% | |
| ! | TGACTAGGGAACAAGAGCGC+TGG | + | tig0033388:1219-1238 | Msa1451310:CDS | 55.0% |
| !! | GACTAGGGAACAAGAGCGCT+GGG | + | tig0033388:1220-1239 | Msa1451310:CDS | 55.0% |
| !! | GAACAAGAGCGCTGGGTTGT+GGG | + | tig0033388:1227-1246 | Msa1451310:CDS | 55.0% |
| GTGTCCAGAATGTGGCACAG+TGG | - | tig0033388:1632-1651 | Msa1451310:intergenic | 55.0% | |
| ! | GTGTTGGCAGTGTTGAAGGC+TGG | + | tig0033388:1999-2018 | Msa1451310:intron | 55.0% |
| GTGTTGAAGGCTGGTGTGTG+TGG | + | tig0033388:2008-2027 | Msa1451310:intron | 55.0% | |
| TTGAAGGCTGGTGTGTGTGG+TGG | + | tig0033388:2011-2030 | Msa1451310:intron | 55.0% | |
| ! | GGTGTGTGTGGTGGTGATGA+TGG | + | tig0033388:2020-2039 | Msa1451310:intron | 55.0% |
| ! | TAGTGTGGTGGAGGTAGGAG+AGG | + | tig0033388:2056-2075 | Msa1451310:intron | 55.0% |
| ATGGATGCCTTAGCAGAGCG+TGG | + | tig0033388:210-229 | Msa1451310:CDS | 55.0% | |
| ! | TGACTAGGGAACAAGAGCGC+TGG | + | tig0033388:1219-1238 | Msa1451310:CDS | 55.0% |
| !! | GACTAGGGAACAAGAGCGCT+GGG | + | tig0033388:1220-1239 | Msa1451310:CDS | 55.0% |
| !! | GAACAAGAGCGCTGGGTTGT+GGG | + | tig0033388:1227-1246 | Msa1451310:CDS | 55.0% |
| GTGTCCAGAATGTGGCACAG+TGG | - | tig0033388:1632-1651 | Msa1451310:intergenic | 55.0% | |
| ! | GTGTTGGCAGTGTTGAAGGC+TGG | + | tig0033388:1999-2018 | Msa1451310:intron | 55.0% |
| GTGTTGAAGGCTGGTGTGTG+TGG | + | tig0033388:2008-2027 | Msa1451310:intron | 55.0% | |
| TTGAAGGCTGGTGTGTGTGG+TGG | + | tig0033388:2011-2030 | Msa1451310:intron | 55.0% | |
| ! | GGTGTGTGTGGTGGTGATGA+TGG | + | tig0033388:2020-2039 | Msa1451310:intron | 55.0% |
| ! | TAGTGTGGTGGAGGTAGGAG+AGG | + | tig0033388:2056-2075 | Msa1451310:intron | 55.0% |
| GCAGAGCGTGGTTTCCTTCC+CGG | + | tig0033388:222-241 | Msa1451310:CDS | 60.0% | |
| GATGGCAAACGTCTCGCTCC+TGG | - | tig0033388:655-674 | Msa1451310:intergenic | 60.0% | |
| CCTCTGTCATGGCGACCCTA+GGG | + | tig0033388:1017-1036 | Msa1451310:CDS | 60.0% | |
| !! | GGAACAAGAGCGCTGGGTTG+TGG | + | tig0033388:1226-1245 | Msa1451310:CDS | 60.0% |
| GGTGGAGGTAGGAGAGGACA+TGG | + | tig0033388:2062-2081 | Msa1451310:CDS | 60.0% | |
| GAGAGGACATGGTGCACTCG+TGG | + | tig0033388:2073-2092 | Msa1451310:CDS | 60.0% | |
| ACATGGTGCACTCGTGGCGA+GGG | + | tig0033388:2079-2098 | Msa1451310:CDS | 60.0% | |
| TGCACTCGTGGCGAGGGTAA+AGG | + | tig0033388:2085-2104 | Msa1451310:CDS | 60.0% | |
| GCAGAGCGTGGTTTCCTTCC+CGG | + | tig0033388:222-241 | Msa1451310:CDS | 60.0% | |
| GATGGCAAACGTCTCGCTCC+TGG | - | tig0033388:655-674 | Msa1451310:intergenic | 60.0% | |
| CCTCTGTCATGGCGACCCTA+GGG | + | tig0033388:1017-1036 | Msa1451310:CDS | 60.0% | |
| !! | GGAACAAGAGCGCTGGGTTG+TGG | + | tig0033388:1226-1245 | Msa1451310:CDS | 60.0% |
| GGTGGAGGTAGGAGAGGACA+TGG | + | tig0033388:2062-2081 | Msa1451310:CDS | 60.0% | |
| GAGAGGACATGGTGCACTCG+TGG | + | tig0033388:2073-2092 | Msa1451310:CDS | 60.0% | |
| ACATGGTGCACTCGTGGCGA+GGG | + | tig0033388:2079-2098 | Msa1451310:CDS | 60.0% | |
| TGCACTCGTGGCGAGGGTAA+AGG | + | tig0033388:2085-2104 | Msa1451310:CDS | 60.0% | |
| GCCTCTGTCATGGCGACCCT+AGG | + | tig0033388:1016-1035 | Msa1451310:CDS | 65.0% | |
| CCCTAGGGTCGCCATGACAG+AGG | - | tig0033388:1020-1039 | Msa1451310:intergenic | 65.0% | |
| GACATGGTGCACTCGTGGCG+AGG | + | tig0033388:2078-2097 | Msa1451310:CDS | 65.0% | |
| GCCTCTGTCATGGCGACCCT+AGG | + | tig0033388:1016-1035 | Msa1451310:CDS | 65.0% | |
| CCCTAGGGTCGCCATGACAG+AGG | - | tig0033388:1020-1039 | Msa1451310:intergenic | 65.0% | |
| GACATGGTGCACTCGTGGCG+AGG | + | tig0033388:2078-2097 | Msa1451310:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033388 | gene | 56 | 2124 | 56 | ID=Msa1451310;Name=Msa1451310 |
| tig0033388 | mRNA | 56 | 2124 | 56 | ID=Msa1451310-mRNA-1;Parent=Msa1451310;Name=Msa1451310-mRNA-1;_AED=0.11;_eAED=0.11;_QI=154|0.75|0.6|0.8|1|0.8|5|0|224 |
| tig0033388 | exon | 56 | 254 | 56 | ID=Msa1451310-mRNA-1:exon:17962;Parent=Msa1451310-mRNA-1 |
| tig0033388 | exon | 633 | 878 | 633 | ID=Msa1451310-mRNA-1:exon:17963;Parent=Msa1451310-mRNA-1 |
| tig0033388 | exon | 1001 | 1081 | 1001 | ID=Msa1451310-mRNA-1:exon:17964;Parent=Msa1451310-mRNA-1 |
| tig0033388 | exon | 1203 | 1436 | 1203 | ID=Msa1451310-mRNA-1:exon:17965;Parent=Msa1451310-mRNA-1 |
| tig0033388 | exon | 2059 | 2124 | 2059 | ID=Msa1451310-mRNA-1:exon:17966;Parent=Msa1451310-mRNA-1 |
| tig0033388 | five_prime_UTR | 56 | 209 | 56 | ID=Msa1451310-mRNA-1:five_prime_utr;Parent=Msa1451310-mRNA-1 |
| tig0033388 | CDS | 210 | 254 | 210 | ID=Msa1451310-mRNA-1:cds;Parent=Msa1451310-mRNA-1 |
| tig0033388 | CDS | 633 | 878 | 633 | ID=Msa1451310-mRNA-1:cds;Parent=Msa1451310-mRNA-1 |
| tig0033388 | CDS | 1001 | 1081 | 1001 | ID=Msa1451310-mRNA-1:cds;Parent=Msa1451310-mRNA-1 |
| tig0033388 | CDS | 1203 | 1436 | 1203 | ID=Msa1451310-mRNA-1:cds;Parent=Msa1451310-mRNA-1 |
| tig0033388 | CDS | 2059 | 2124 | 2059 | ID=Msa1451310-mRNA-1:cds;Parent=Msa1451310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
